BLASTX nr result
ID: Alisma22_contig00033161
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Alisma22_contig00033161
(246 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass... 79 1e-18
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 79 1e-18
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 77 2e-18
BAA22288.1 polyprotein [Oryza australiensis] 77 2e-18
ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass... 78 5e-18
ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass... 77 8e-18
CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] CAD4052... 74 1e-17
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 71 5e-17
ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass... 73 1e-16
AAP03364.1 putative polyprotein [Oryza sativa Japonica Group] 73 1e-16
JAV01726.1 Retrovirus-related Pol polyprotein from transposon TN... 71 1e-16
ABA97706.1 retrotransposon protein, putative, Ty1-copia subclass... 71 1e-16
CAD39797.2 OSJNBa0071G03.10 [Oryza sativa Japonica Group] 73 3e-16
AAX94812.1 retrotransposon protein, putative, Ty1-copia sub-clas... 77 6e-16
KNA22856.1 hypothetical protein SOVF_029260 [Spinacia oleracea] 74 5e-15
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 77 1e-14
ABF97002.1 retrotransposon protein, putative, Ty1-copia subclass... 74 1e-14
AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-clas... 76 1e-14
ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass... 77 2e-14
AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-clas... 75 2e-14
>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 78.6 bits (192), Expect(2) = 1e-18
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YGR+EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 1097 FLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDT 1147
Score = 42.0 bits (97), Expect(2) = 1e-18
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A KE +WIK F+++ G
Sbjct: 1146 DTVADSTTEAEYIAASEAAKEAVWIKKFVSQLG 1178
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 78.6 bits (192), Expect(2) = 1e-18
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YGR+EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 1010 FLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDT 1060
Score = 42.0 bits (97), Expect(2) = 1e-18
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A KE +WIK F+++ G
Sbjct: 1059 DTVADSTTEAEYIAASEAAKEAVWIKKFVSQLG 1091
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 76.6 bits (187), Expect(2) = 2e-18
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDDY+ Q GF+F LN AVSWKSS +++
Sbjct: 728 FLVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQET 778
Score = 43.1 bits (100), Expect(2) = 2e-18
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
E V D TTEAE+IA S A KE +WI+ FIT+ G
Sbjct: 777 ETVADSTTEAEYIAASEAAKEGVWIRNFITELG 809
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 77.4 bits (189), Expect(2) = 2e-18
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG EE+LVV YTDASFQTDKDDY+ Q GF+F LN AVSWKSS +D+
Sbjct: 1148 FLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDT 1198
Score = 42.0 bits (97), Expect(2) = 2e-18
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A KE +WIK F+++ G
Sbjct: 1197 DTVADSTTEAEYIAASEAAKEAVWIKKFVSELG 1229
>ABA97342.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 77.8 bits (190), Expect(2) = 5e-18
Identities = 36/51 (70%), Positives = 43/51 (84%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVVK YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 882 FLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDT 932
Score = 40.4 bits (93), Expect(2) = 5e-18
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V+D TEAE+IA S A KE +WIK F+++ G
Sbjct: 931 DTVVDSITEAEYIAASEAAKEAVWIKKFVSQLG 963
>ABG22008.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 77.0 bits (188), Expect(2) = 8e-18
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FLIYG +EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 772 FLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDT 822
Score = 40.4 bits (93), Expect(2) = 8e-18
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A KE WIK F+++ G
Sbjct: 821 DTVADSTTEAEYIAASEAAKEAAWIKKFVSQLG 853
>CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] CAD40526.2
OSJNBa0023J03.14 [Oryza sativa Japonica Group]
CAH66059.1 OSIGBa0125J07.8 [Oryza sativa Indica Group]
CAH66155.1 OSIGBa0113B06.1 [Oryza sativa Indica Group]
Length = 704
Score = 73.9 bits (180), Expect(2) = 1e-17
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSS 143
FL+YG +EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS
Sbjct: 535 FLVYGGQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSS 581
Score = 43.1 bits (100), Expect(2) = 1e-17
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +1
Query: 154 VLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
V D TTEAE+IA S A KEV+WIK F+++ G
Sbjct: 586 VADSTTEAEYIAASEAAKEVVWIKKFVSQLG 616
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 70.9 bits (172), Expect(2) = 5e-17
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSS 143
FL+YG EELVV YTDASFQTDKDD++ Q GF F LN AVSWKS+
Sbjct: 795 FLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKST 841
Score = 43.9 bits (102), Expect(2) = 5e-17
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 154 VLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
V D TTEAE+IA S A KEV+WI+ FIT+ G
Sbjct: 846 VADSTTEAEYIAASEAAKEVVWIRKFITELG 876
>ABF96491.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 72.8 bits (177), Expect(2) = 1e-16
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDD++ Q F+F LN AVSWKSS +D+
Sbjct: 622 FLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDT 672
Score = 40.4 bits (93), Expect(2) = 1e-16
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A K+ +WIK F+++ G
Sbjct: 671 DTVADSTTEAEYIAASEAAKKAVWIKKFVSQLG 703
>AAP03364.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 72.8 bits (177), Expect(2) = 1e-16
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDD++ Q F+F LN AVSWKSS +D+
Sbjct: 512 FLVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDT 562
Score = 40.4 bits (93), Expect(2) = 1e-16
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+ V D TTEAE+IA S A K+ +WIK F+++ G
Sbjct: 561 DTVADSTTEAEYIAASEAAKKAVWIKKFVSQLG 593
>JAV01726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 243
Score = 71.2 bits (173), Expect(2) = 1e-16
Identities = 33/47 (70%), Positives = 38/47 (80%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSS 143
FL+YG +ELV+ YTDASFQTDKDD++ Q GFIF LN AVSWKSS
Sbjct: 74 FLVYGGSDELVLSGYTDASFQTDKDDFRSQSGFIFCLNGGAVSWKSS 120
Score = 42.0 bits (97), Expect(2) = 1e-16
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 154 VLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
V D TTEAE+IA S A KE +WI+ F+T+ G
Sbjct: 125 VADSTTEAEYIAASEAAKEAVWIRKFVTELG 155
>ABA97706.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 206
Score = 70.9 bits (172), Expect(2) = 1e-16
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRD 152
FL+YG EELVV YTD SFQ DKDD++ Q GF+F LN AVSWKSS +D
Sbjct: 63 FLVYGGHEELVVNGYTDTSFQNDKDDFRSQSGFLFCLNGGAVSWKSSKQD 112
Score = 42.4 bits (98), Expect(2) = 1e-16
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFITKHG 246
+I D TTEAE+IA S A KE +WIK F+++ G
Sbjct: 112 DIAADSTTEAEYIAASEAAKEAVWIKKFVSQLG 144
>CAD39797.2 OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 72.8 bits (177), Expect(2) = 3e-16
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDD++ + GF+F LN VSWKSS +D+
Sbjct: 870 FLVYGGQEELVVNGYTDASFQTDKDDFRSRSGFVFCLNGGVVSWKSSKQDT 920
Score = 39.3 bits (90), Expect(2) = 3e-16
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVIWIKTFIT 237
+ V D TTEAE+IA S A K+ +WIK F++
Sbjct: 919 DTVADSTTEAEYIAASEAAKDAVWIKKFVS 948
>AAX94812.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA93175.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 155
Score = 76.6 bits (187), Expect = 6e-16
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 99 FLVYGGQEELVVNGYTDASFQTDKDDFRSQFGFVFCLNGGAVSWKSSKQDT 149
>KNA22856.1 hypothetical protein SOVF_029260 [Spinacia oleracea]
Length = 142
Score = 73.9 bits (180), Expect = 5e-15
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDSFRLYNRGRA 182
FL+YG ++EL+VK YTDASFQTDKDD++ Q GF F LN A SWKS+ + FR+ R+
Sbjct: 77 FLVYGGDDELIVKGYTDASFQTDKDDFRSQSGFAFCLNGGAASWKSANKAPFRILQLKRS 136
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 77.0 bits (188), Expect = 1e-14
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FLIYG +EELVV YTDASFQTDKDDY+ Q GF+F LN AVSWKSS +++
Sbjct: 1144 FLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQET 1194
>ABF97002.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 204
Score = 74.3 bits (181), Expect = 1e-14
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL YGR+EELVV YTDASFQTDKDD++LQ F+F LN AVSWKS +D+
Sbjct: 134 FLFYGRQEELVVNGYTDASFQTDKDDFRLQSRFVFCLNGGAVSWKSFKQDT 184
>AAX96622.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92972.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 75.9 bits (185), Expect = 1e-14
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQTDKDD++ Q GF+F LN AVSWKSS +D+
Sbjct: 131 FLVYGGQEELVVNDYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDT 181
>ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDSFRLYNRGRA 182
FL+YG +EELVV Y DASFQTDKDD++LQ GF+F LN RAVSWKS + + N
Sbjct: 1612 FLVYGGQEELVVNGYIDASFQTDKDDFRLQSGFVFCLNGRAVSWKSVMTSASSPMN---- 1667
Query: 183 YCYIECNKGGYMDQDVHHKT 242
+ C+ G + Q H++
Sbjct: 1668 ---LYCDNSGAIVQAKEHRS 1684
>AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] ABA93176.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 938
Score = 75.5 bits (184), Expect(2) = 2e-14
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +3
Query: 3 FLIYGREEELVVKRYTDASFQTDKDDYKLQLGFIFFLNNRAVSWKSSIRDS 155
FL+YG +EELVV YTDASFQ DKDD++ Q GF+F+LN AVSWKSS +D+
Sbjct: 867 FLVYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFYLNGGAVSWKSSKQDT 917
Score = 30.8 bits (68), Expect(2) = 2e-14
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 148 EIVLDCTTEAEHIATSNATKEVI 216
+ V D TTEAE+IA S A KEV+
Sbjct: 916 DTVADSTTEAEYIAASEAAKEVV 938