BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00031534
         (452 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN...    65   1e-09
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t...    59   4e-07
AAK29467.1 polyprotein-like [Solanum chilense]                         56   2e-06

>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1321

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
 Frame = -3

Query: 309 LGGLAW*KKYFIIYIDDELRKVRV-LAEDNDQFLYCF*KVHA*WNGRQ-KRLKSLC---- 148
           LGG     KYF+ +IDD  RK  V L +   Q   CF + HA       K+LK +     
Sbjct: 490 LGG----NKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFHAMVERETGKQLKCIRTDNG 545

Query: 147 -KYICKEFHEYSMPYVTLYERIEHGIQQQNGIARRIYNTIMEKARCMLR 4
            +YI KEF +Y   Y   +E+   G  Q NGIA R+  TI+EK RCMLR
Sbjct: 546 GEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIAERMNRTIVEKVRCMLR 594


>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease CAA32025.1 unnamed protein product
           [Nicotiana tabacum]
          Length = 1328

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
 Frame = -3

Query: 285 KYFIIYIDDELRKVRV-LAEDNDQFLYCF*KVHA*WN---GRQ-KRLKSLC--KYICKEF 127
           KYF+ +IDD  RK+ V + +  DQ    F K HA      GR+ KRL+S    +Y  +EF
Sbjct: 501 KYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREF 560

Query: 126 HEYSMPYVTLYERIEHGIQQQNGIARRIYNTIMEKARCMLR 4
            EY   +   +E+   G  Q NG+A R+  TI+EK R MLR
Sbjct: 561 EEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLR 601


>AAK29467.1 polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
 Frame = -3

Query: 285 KYFIIYIDDELRKVRV-LAEDNDQFLYCF*KVHA*----WNGRQKRLKSLC--KYICKEF 127
           KYF+ +IDD  RK+ V +    DQ    F K HA        ++KRL++    +Y  +EF
Sbjct: 502 KYFVTFIDDASRKLWVYIFRAKDQVFQVFQKFHALVERETGRKRKRLRTDNGGEYTSREF 561

Query: 126 HEYSMPYVTLYERIEHGIQQQNGIARRIYNTIMEKARCMLR 4
            EY   +   +E+   G  Q NG+A R+  TI+EK R MLR
Sbjct: 562 EEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLR 602