BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00028155
         (272 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_015895381.1 PREDICTED: LOW QUALITY PROTEIN: cleavage and poly...    57   1e-07
CAN61405.1 hypothetical protein VITISV_014259 [Vitis vinifera]         54   3e-06
XP_018829512.1 PREDICTED: cleavage and polyadenylation specifici...    53   5e-06
XP_011463169.1 PREDICTED: cleavage and polyadenylation specifici...    53   5e-06
XP_010651729.1 PREDICTED: cleavage and polyadenylation specifici...    53   5e-06
XP_018829511.1 PREDICTED: cleavage and polyadenylation specifici...    53   5e-06
JAT67557.1 Cleavage and polyadenylation specificity factor subun...    52   7e-06

>XP_015895381.1 PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
           specificity factor subunit 3-II [Ziziphus jujuba]
          Length = 665

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
 Frame = +3

Query: 3   YCCPVDTKFLETETSSDMIAPLNN----SG---WLHALRVKIENLGDIKGITEAPNELRL 161
           YCCPV    LE ET S  I P NN    +G   WL  L  ++ +      I +    L++
Sbjct: 542 YCCPVSIGSLE-ETKSTDITPTNNRLCVTGRCLWLRVLFARLSSEFSGGNIQDFGEYLQV 600

Query: 162 RSLLIECCSKRSCPYRTKPEACETGRHLVYFCCAWSV 272
            S  +  CSK +CP R           +VYFCC WS+
Sbjct: 601 ESFQVSICSKDNCPNRITETQKNNSEDVVYFCCTWSI 637


>CAN61405.1 hypothetical protein VITISV_014259 [Vitis vinifera]
          Length = 328

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = +3

Query: 3   YCCPVD------TKFLETETSSDMIAPLNNSGWLHALRVKIEN-LGDIKGITEAPNELRL 161
           YCCPV       TK ++   S ++++  +   WLH L  K+   LG    I +    L++
Sbjct: 215 YCCPVQIGNLERTKGMDFALSKNVVSTSDECSWLHQLFAKLSTKLGG--NIQDFGQHLQV 272

Query: 162 RSLLIECCSKRSCPYRTKPEACETGRHLVYFCCAWSV 272
            S+ I  C K  CPYRT     +     V+FCC WSV
Sbjct: 273 DSIHISVCLKDICPYRTTDGPQK--ESAVFFCCTWSV 307


>XP_018829512.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II isoform X2 [Juglans regia]
          Length = 626

 Score = 52.8 bits (125), Expect = 5e-06
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
 Frame = +3

Query: 3   YCCPV------DTKFLETETSSDMIAPLNNSGWLHALRVKIENLGDIKGITEAPNELRLR 164
           YC P+      DTK  +  +SS+ ++      WL  L +K+ +      I     ++++ 
Sbjct: 511 YCFPINTDNLEDTKSTDVSSSSNALSMSGRCSWLPMLYIKLSDELSGGNIQYFGEQIQVE 570

Query: 165 SLLIECCSKRSCPYR---TKPEACETGRHLVYFCCAWSV 272
           S  +  C K  CPYR   + P  CE     V+FCC WS+
Sbjct: 571 SFSVSLCLKDRCPYRIVDSPPNKCEA----VFFCCTWSI 605


>XP_011463169.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II [Fragaria vesca subsp. vesca]
          Length = 636

 Score = 52.8 bits (125), Expect = 5e-06
 Identities = 27/90 (30%), Positives = 39/90 (43%)
 Frame = +3

Query: 3   YCCPVDTKFLETETSSDMIAPLNNSGWLHALRVKIENLGDIKGITEAPNELRLRSLLIEC 182
           YCCP      +  TS  + +   N+  L     K+ N      I    + L+L S+ +  
Sbjct: 529 YCCPAHIGNSQENTSLPLSS--TNNDLLQLFSAKLANELSEGNIQHFGDHLQLESIHVSI 586

Query: 183 CSKRSCPYRTKPEACETGRHLVYFCCAWSV 272
           CS   CPYR      E  R  V+FCC+W +
Sbjct: 587 CSNNDCPYRLSDNGAEEQREPVFFCCSWEM 616


>XP_010651729.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II [Vitis vinifera]
          Length = 649

 Score = 52.8 bits (125), Expect = 5e-06
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = +3

Query: 3   YCCPVD------TKFLETETSSDMIAPLNNSGWLHALRVKIEN-LGDIKGITEAPNELRL 161
           YCCPV       TK ++   S ++++  +   WLH L  K+   LG    I +    L++
Sbjct: 536 YCCPVQIGNLERTKGMDFALSKNVVSTSDECSWLHLLFAKLATKLGG--NIQDFGQHLQV 593

Query: 162 RSLLIECCSKRSCPYRTKPEACETGRHLVYFCCAWSV 272
            S+ I  C K  CPYRT     +     V+FCC WSV
Sbjct: 594 DSIHISVCLKDICPYRTTDGPQK--EPAVFFCCTWSV 628


>XP_018829511.1 PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II isoform X1 [Juglans regia]
          Length = 667

 Score = 52.8 bits (125), Expect = 5e-06
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
 Frame = +3

Query: 3   YCCPV------DTKFLETETSSDMIAPLNNSGWLHALRVKIENLGDIKGITEAPNELRLR 164
           YC P+      DTK  +  +SS+ ++      WL  L +K+ +      I     ++++ 
Sbjct: 552 YCFPINTDNLEDTKSTDVSSSSNALSMSGRCSWLPMLYIKLSDELSGGNIQYFGEQIQVE 611

Query: 165 SLLIECCSKRSCPYR---TKPEACETGRHLVYFCCAWSV 272
           S  +  C K  CPYR   + P  CE     V+FCC WS+
Sbjct: 612 SFSVSLCLKDRCPYRIVDSPPNKCEA----VFFCCTWSI 646


>JAT67557.1 Cleavage and polyadenylation specificity factor subunit 3-II,
           partial [Anthurium amnicola]
          Length = 732

 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
 Frame = +3

Query: 3   YCCPVDTKFLE------------TETSSDMIA---------PLNNSGWLHALRVKIENLG 119
           YCCPV    LE            T   S ++A          L+   WL+ L +K+    
Sbjct: 606 YCCPVSISSLEKMALHQSSGMNSTSMVSSLLACSPASITGTSLSECHWLNLLLLKLRKEN 665

Query: 120 DIKGITEAPNELRLRSLLIECCSKRSCPYRTKPEACETGRHLVYFCCAWSV 272
           D   I  A + LRL S  ++ C K SC +R + E     +  V+FCC+WS+
Sbjct: 666 DCSHIEVASDHLRLGSFHVQFCPKDSCQHRIE-EVIHPEKLAVFFCCSWSL 715