BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00025323
         (454 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OMO75679.1 hypothetical protein CCACVL1_16102 [Corchorus capsula...   265   3e-85
JAT57709.1 DNA-directed RNA polymerase D subunit 2a [Anthurium a...   278   2e-84
XP_008452849.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   277   3e-84
XP_004145500.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   277   3e-84
BAS91259.1 Os04g0641000 [Oryza sativa Japonica Group]                 264   7e-84
XP_002283296.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   276   1e-83
CBI21137.3 unnamed protein product, partial [Vitis vinifera]          276   1e-83
OMO69360.1 hypothetical protein COLO4_29107 [Corchorus olitorius]     273   3e-83
XP_020112440.1 DNA-directed RNA polymerases IV and V subunit 2-l...   275   3e-83
XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   273   7e-83
XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   273   7e-83
GAU27043.1 hypothetical protein TSUD_314050, partial [Trifolium ...   262   9e-83
ONM13155.1 nuclear RNA polymerase D2/E2 [Zea mays]                    261   1e-82
AQK46536.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   261   1e-82
XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   273   1e-82
ABG29322.1 DNA-directed RNA polymerase II 135 kDa polypeptide, p...   253   3e-82
AAY68198.1 RNA polymerase IV second largest subunit, partial [Rh...   270   4e-82
XP_002324332.2 DNA-directed RNA polymerase family protein [Popul...   271   5e-82
XP_007011717.2 PREDICTED: DNA-directed RNA polymerases IV and V ...   271   5e-82
EOY29336.1 DNA-directed RNA polymerase isoform 1 [Theobroma cacao]    271   5e-82

>OMO75679.1 hypothetical protein CCACVL1_16102 [Corchorus capsularis]
          Length = 433

 Score =  265 bits (677), Expect = 3e-85
 Identities = 127/151 (84%), Positives = 140/151 (92%)
 Frame = +1

Query: 1   QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
           QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 176 QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEA 235

Query: 181 ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
           ALGKGIACGGS++YATPF+T S   I +QLHRAGFSR G ERV NGR+GEM+RS IFMGP
Sbjct: 236 ALGKGIACGGSLKYATPFSTVSVDAIIEQLHRAGFSRWGNERVCNGRSGEMVRSLIFMGP 295

Query: 361 TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           TFYQRL HMAEDK+K+RNTGPVHPLTRQPV+
Sbjct: 296 TFYQRLIHMAEDKVKYRNTGPVHPLTRQPVA 326


>JAT57709.1 DNA-directed RNA polymerase D subunit 2a [Anthurium amnicola]
          Length = 1216

 Score =  278 bits (711), Expect = 2e-84
 Identities = 131/151 (86%), Positives = 142/151 (94%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT+QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 959  QVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTLQGIVPDIVINPHAFPSRQTPGQLLEA 1018

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS++YATPFTTPS   I DQLHRAG+SR G ERV NGRTGEMMR  IFMGP
Sbjct: 1019 ALGKGIACGGSVKYATPFTTPSVDVITDQLHRAGYSRWGAERVSNGRTGEMMRCMIFMGP 1078

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL+HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1079 TFYQRLSHMAEDKVKFRNTGPVHPLTRQPVA 1109


>XP_008452849.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Cucumis melo]
          Length = 1197

 Score =  277 bits (709), Expect = 3e-84
 Identities = 133/151 (88%), Positives = 142/151 (94%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFTIQGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 940  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 999

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIA GGS++YATPF+TPS   I DQLHRAGFSR G ERVYNGRTGEMMRS IFMGP
Sbjct: 1000 ALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGP 1059

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1060 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1090


>XP_004145500.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Cucumis
            sativus] KGN55429.1 hypothetical protein Csa_4G651950
            [Cucumis sativus]
          Length = 1197

 Score =  277 bits (709), Expect = 3e-84
 Identities = 133/151 (88%), Positives = 142/151 (94%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFTIQGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 940  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 999

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIA GGS++YATPF+TPS   I DQLHRAGFSR G ERVYNGRTGEMMRS IFMGP
Sbjct: 1000 ALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGP 1059

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1060 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1090


>BAS91259.1 Os04g0641000 [Oryza sativa Japonica Group]
          Length = 515

 Score =  264 bits (674), Expect = 7e-84
 Identities = 128/151 (84%), Positives = 136/151 (90%)
 Frame = +1

Query: 1   QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
           QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 258 QVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEA 317

Query: 181 ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
           ALGKGIA GG++RYATPFTT S   I DQLH+AGFSR G E V NGRTGE M S IFMGP
Sbjct: 318 ALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGP 377

Query: 361 TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 378 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 408


>XP_002283296.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Vitis
            vinifera] XP_010648748.1 PREDICTED: DNA-directed RNA
            polymerases IV and V subunit 2 [Vitis vinifera]
          Length = 1198

 Score =  276 bits (705), Expect = 1e-83
 Identities = 133/151 (88%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVRTPC+GDKFSSMHGQKGV+GFLESQENFPFTIQGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 941  QVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1000

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGG +R+ATPF+T S   I DQLHRAGFSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 1001 ALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGP 1060

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPVS
Sbjct: 1061 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVS 1091


>CBI21137.3 unnamed protein product, partial [Vitis vinifera]
          Length = 1220

 Score =  276 bits (705), Expect = 1e-83
 Identities = 133/151 (88%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVRTPC+GDKFSSMHGQKGV+GFLESQENFPFTIQGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 963  QVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1022

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGG +R+ATPF+T S   I DQLHRAGFSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 1023 ALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGP 1082

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPVS
Sbjct: 1083 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVS 1113


>OMO69360.1 hypothetical protein COLO4_29107 [Corchorus olitorius]
          Length = 1034

 Score =  273 bits (698), Expect = 3e-83
 Identities = 131/151 (86%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 777  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPTRQTPGQLLEA 836

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS++YATPF+T S   I +QLHRAGFSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 837  ALGKGIACGGSLKYATPFSTLSVDAITEQLHRAGFSRWGHERVYNGRTGEMVRSLIFMGP 896

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 897  TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 927


>XP_020112440.1 DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
            XP_020112441.1 DNA-directed RNA polymerases IV and V
            subunit 2-like [Ananas comosus]
          Length = 1201

 Score =  275 bits (702), Expect = 3e-83
 Identities = 132/151 (87%), Positives = 140/151 (92%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 944  QVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEA 1003

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS RYATPFTTPS   I +QLHRAG+SR G E+V NGRTGEMMRS IFMGP
Sbjct: 1004 ALGKGIACGGSARYATPFTTPSVDVITEQLHRAGYSRWGSEKVLNGRTGEMMRSMIFMGP 1063

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1064 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1094


>XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Elaeis
            guineensis]
          Length = 1189

 Score =  273 bits (699), Expect = 7e-83
 Identities = 131/151 (86%), Positives = 140/151 (92%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 932  QVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 991

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS+RYATPFTT S   I +QLHRAGFSR G E+V NGRTGE+MRS IFMGP
Sbjct: 992  ALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRSMIFMGP 1051

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1052 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1082


>XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score =  273 bits (699), Expect = 7e-83
 Identities = 131/151 (86%), Positives = 140/151 (92%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 932  QVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEA 991

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS+RYATPFTT S   I +QLHRAGFSR G E+V NGRTGE+MRS IFMGP
Sbjct: 992  ALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRSMIFMGP 1051

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1052 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1082


>GAU27043.1 hypothetical protein TSUD_314050, partial [Trifolium subterraneum]
          Length = 551

 Score =  262 bits (669), Expect = 9e-83
 Identities = 127/151 (84%), Positives = 139/151 (92%)
 Frame = +1

Query: 1   QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
           QVR+P +GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 294 QVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEA 353

Query: 181 ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
           ALGKGIAC GS+R ATPF+T S   I DQLHRAGFSR G ERVYNGRTGE++RS IFMGP
Sbjct: 354 ALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEVVRSLIFMGP 413

Query: 361 TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           TFYQRL+HM+EDK+KFRNTGPVHPLTRQPV+
Sbjct: 414 TFYQRLHHMSEDKVKFRNTGPVHPLTRQPVA 444


>ONM13155.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 525

 Score =  261 bits (667), Expect = 1e-82
 Identities = 124/151 (82%), Positives = 137/151 (90%)
 Frame = +1

Query: 1   QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
           QVRTPC+GDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 268 QVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEA 327

Query: 181 ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
           ALGKGIAC G++RYATPFTT S   I +QLHRAG+SR G E V NGRTGE ++S +FMGP
Sbjct: 328 ALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGP 387

Query: 361 TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           TFYQRL HM+EDK+KFRNTGPVHPLTRQPV+
Sbjct: 388 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 418


>AQK46536.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 525

 Score =  261 bits (666), Expect = 1e-82
 Identities = 123/151 (81%), Positives = 136/151 (90%)
 Frame = +1

Query: 1   QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
           QVRTPC+GDKFSSMHGQKGV+GFLESQENFPFT  GIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 268 QVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEA 327

Query: 181 ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
           ALGKGIAC G++RYATPFTT S   I +QLH+AG+SR G E V NGRTGE M+S +FMGP
Sbjct: 328 ALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVFMGP 387

Query: 361 TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           TFYQRL HM+EDK+K+RNTGPVHPLTRQPV+
Sbjct: 388 TFYQRLIHMSEDKVKYRNTGPVHPLTRQPVA 418


>XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Nelumbo nucifera]
          Length = 1201

 Score =  273 bits (697), Expect = 1e-82
 Identities = 131/151 (86%), Positives = 140/151 (92%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+P +GDKFSSMHGQKGV+GFLESQENFPFT+QGIVPDIVINPHAFPTRQTPGQLLEA
Sbjct: 944  QVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTLQGIVPDIVINPHAFPTRQTPGQLLEA 1003

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS+RYATP+T  S   I DQLHRAG+SR G ER+YNGRTGEMMRS IFMGP
Sbjct: 1004 ALGKGIACGGSMRYATPYTAASIDVITDQLHRAGYSRWGSERIYNGRTGEMMRSLIFMGP 1063

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPVS
Sbjct: 1064 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVS 1094


>ABG29322.1 DNA-directed RNA polymerase II 135 kDa polypeptide, putative
           [Solanum bulbocastanum]
          Length = 304

 Score =  253 bits (646), Expect = 3e-82
 Identities = 122/150 (81%), Positives = 134/150 (89%)
 Frame = +1

Query: 4   VRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEAA 183
           VR+PC+GDKFSSMHGQKGV+G+LESQENFPFT+QGIVPDIVINPHAFP+RQTPGQLLEA+
Sbjct: 49  VRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAS 108

Query: 184 LGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGPT 363
           LGKGIA GG  +YATPF+T S   I  QLH  GFSR G ERVYNGRTGEM+ S IFMGPT
Sbjct: 109 LGKGIALGGGEKYATPFSTLSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFMGPT 168

Query: 364 FYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
           FYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 169 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 198


>AAY68198.1 RNA polymerase IV second largest subunit, partial [Rhododendron
            macrophyllum]
          Length = 1019

 Score =  270 bits (689), Expect = 4e-82
 Identities = 127/151 (84%), Positives = 139/151 (92%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVRTPC+GDKFSSMHGQKGV+GFLESQENFPFTIQGIVPDIV+NPHAFP+RQTPGQLLEA
Sbjct: 762  QVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEA 821

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGG  +YATPF+T S   + DQLHRAGFSR G ERVYNGRTGEM+ S +FMGP
Sbjct: 822  ALGKGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGP 881

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HM+EDK+KFRNTGPVHPLTRQPV+
Sbjct: 882  TFYQRLTHMSEDKVKFRNTGPVHPLTRQPVA 912


>XP_002324332.2 DNA-directed RNA polymerase family protein [Populus trichocarpa]
            EEF02897.2 DNA-directed RNA polymerase family protein
            [Populus trichocarpa]
          Length = 1181

 Score =  271 bits (693), Expect = 5e-82
 Identities = 131/151 (86%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFTIQG+VPDIVINPHAFP+RQTPGQLLEA
Sbjct: 924  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEA 983

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS RYATPF+T S  +I DQLHRA FSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 984  ALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGP 1043

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1044 TFYQRLVHMAEDKVKFRNTGPVHPLTRQPVA 1074


>XP_007011717.2 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Theobroma
            cacao]
          Length = 1184

 Score =  271 bits (693), Expect = 5e-82
 Identities = 130/151 (86%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 927  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEA 986

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS++YATPF+T S   I +QLHRAGFSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 987  ALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1046

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1047 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1077


>EOY29336.1 DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  271 bits (693), Expect = 5e-82
 Identities = 130/151 (86%), Positives = 141/151 (93%)
 Frame = +1

Query: 1    QVRTPCVGDKFSSMHGQKGVIGFLESQENFPFTIQGIVPDIVINPHAFPTRQTPGQLLEA 180
            QVR+PC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEA
Sbjct: 927  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEA 986

Query: 181  ALGKGIACGGSIRYATPFTTPSACEIGDQLHRAGFSRGGVERVYNGRTGEMMRSHIFMGP 360
            ALGKGIACGGS++YATPF+T S   I +QLHRAGFSR G ERVYNGRTGEM+RS IFMGP
Sbjct: 987  ALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1046

Query: 361  TFYQRLNHMAEDKMKFRNTGPVHPLTRQPVS 453
            TFYQRL HMAEDK+KFRNTGPVHPLTRQPV+
Sbjct: 1047 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVA 1077