BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00023772
         (1959 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JAT62598.1 Pre-mRNA cleavage complex 2 protein Pcf11 [Anthurium ...   159   3e-37
JAT57374.1 Pre-mRNA cleavage complex 2 protein Pcf11, partial [A...   159   3e-37
XP_010275999.1 PREDICTED: polyadenylation and cleavage factor ho...   144   4e-32
XP_010275998.1 PREDICTED: polyadenylation and cleavage factor ho...   144   5e-32
XP_016683610.1 PREDICTED: polyadenylation and cleavage factor ho...   141   2e-31
KJB67159.1 hypothetical protein B456_010G178200 [Gossypium raimo...   141   2e-31
XP_012450329.1 PREDICTED: polyadenylation and cleavage factor ho...   141   2e-31
XP_016683609.1 PREDICTED: polyadenylation and cleavage factor ho...   141   2e-31
XP_012450328.1 PREDICTED: polyadenylation and cleavage factor ho...   141   2e-31
XP_016683608.1 PREDICTED: polyadenylation and cleavage factor ho...   141   3e-31
KJB67158.1 hypothetical protein B456_010G178200 [Gossypium raimo...   141   3e-31
XP_017645983.1 PREDICTED: polyadenylation and cleavage factor ho...   136   1e-29
XP_017645981.1 PREDICTED: polyadenylation and cleavage factor ho...   136   1e-29
XP_010909642.1 PREDICTED: polyadenylation and cleavage factor ho...   135   2e-29
XP_007026008.2 PREDICTED: polyadenylation and cleavage factor ho...   134   6e-29
EOY28630.1 PCF11P-similar protein 4, putative isoform 1 [Theobro...   134   6e-29
XP_016753659.1 PREDICTED: polyadenylation and cleavage factor ho...   134   6e-29
XP_016753658.1 PREDICTED: polyadenylation and cleavage factor ho...   134   7e-29
XP_016753657.1 PREDICTED: polyadenylation and cleavage factor ho...   134   7e-29
XP_016753656.1 PREDICTED: polyadenylation and cleavage factor ho...   134   8e-29

>JAT62598.1 Pre-mRNA cleavage complex 2 protein Pcf11 [Anthurium amnicola]
          Length = 1039

 Score =  159 bits (403), Expect = 3e-37
 Identities = 175/668 (26%), Positives = 272/668 (40%), Gaps = 64/668 (9%)
 Frame = +3

Query: 147  DAQCSRKLLPRLNAFEEKPPKEYKDHGRGPDVLLS---AVSARSSP-----ISAVGEHSS 302
            D Q +R L   + A+E++   ++ D+   P   LS     + R SP      SAVG    
Sbjct: 260  DLQRARGLSSNVRAYEQRSCIQFGDYDFDPPEELSPHHGPARRGSPQIVHASSAVGTERP 319

Query: 303  AS----NANAGAVFSGK---NDLMMSSSPEIRMQRGSQNDFEL---------------EK 416
             S     + AG + S     +     SSP   ++R S ++  +               ++
Sbjct: 320  LSVSKRTSRAGLMRSASPPDDGFQRDSSPGRSVERASPSNLGVGLVAPARLSDRSGWWDR 379

Query: 417  NFCHHAVKRQREIQSIHEHPIDFSNNLPRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMR 596
            N  H     Q     +++    FS   PR LI AYG+ +  ++  E   K Q+L    + 
Sbjct: 380  NG-HAEFAPQLGGPDVYKIQNGFSKQRPRDLIDAYGNYRGKSTSDEKLPKIQRLDVDGIN 438

Query: 597  TDTTIRKWKNSEEEEYLWDNMSPTLTDPSIHMKPTKHDIPQGTYSAEACLRKSNASTPSS 776
             + T RKW+NSEEEEY W++MSPTL D S        D        +  L K N +   S
Sbjct: 439  REATTRKWQNSEEEEYDWEDMSPTLADRSQSSSRIMFDSVVERVGMKPGLSKPNIAVLES 498

Query: 777  WSMPTRHNTTERT----VMLDQREAVNGLGQRPGNGEYNVSAEKGQYLHSQSI-YRGRDS 941
                  HN  +       ++++R  V G G+   N +  V   +   LH QS+ +  ++ 
Sbjct: 499  DCKSNWHNRVQLPPVDDTIVEERIPVLGSGRGSMNKKSLVGKGRNDLLHHQSLSHYTQEP 558

Query: 942  WTADHM--QSS-------------KVPAQSSGLPAVCHRRPPSNYPTGSDALM--QRPVN 1070
            W   ++  QSS             ++P    GLP   HR P S Y    D  +   R   
Sbjct: 559  WNLHYVSPQSSHSSLSPRSRGRPIQMPLPLRGLPQTGHR-PASPYDNIPDFEVPPHRLSG 617

Query: 1071 SQADSVDTASLPSLPPASANNHVLRQTYIP-SSHSMHPFKAELPSQSSSIPLKPFQYAGH 1247
               DS++   L + P      H+ ++ + P   H M P    +P     + L+   +   
Sbjct: 618  FHLDSLNMDVLAATPSTLIEKHLAQRPHSPPGGHIMWP---SVPKPLPPVHLR-HGFKRR 673

Query: 1248 SNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP----LAPECHSS 1415
             +S  + ++++  G++ S  +    T  + ++ + + +   +    HP    L  + H  
Sbjct: 674  FDSTEASRTLVNEGSNASMVSPWQKT--DVADVKFVNSVPPQIPCQHPGLISLNQQRHEE 731

Query: 1416 VPQSHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDL--HPSSVI 1589
               +   P+E  GN  PPA      L        +QI              L    SSV 
Sbjct: 732  TTIAGLQPQEIHGNLIPPASAQMPSLSLVRPLNPLQIQGHSALSSVLPSTSLGISSSSVA 791

Query: 1590 MGRKSGNPDLQYGGALPSLPP-----RMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXX 1754
            +     +    +GG LP LPP       HT    QS     G++I+N+            
Sbjct: 792  VHSLVNSSAHIHGGGLPPLPPGPPPASSHTGPVSQSA----GSIISNAPSLPISGLISSL 847

Query: 1755 XXXXXXXXPSVAAPKDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHS 1934
                    P     KD V +EFN E LK R++S ++ LY ++PRQC TCGLRF+ QE HS
Sbjct: 848  VAQGLISLPPPTLSKDSVGIEFNVELLKVRHESAINALYIDLPRQCTTCGLRFKHQEDHS 907

Query: 1935 THMDWHVT 1958
             HMDWHVT
Sbjct: 908  NHMDWHVT 915


>JAT57374.1 Pre-mRNA cleavage complex 2 protein Pcf11, partial [Anthurium
            amnicola]
          Length = 1050

 Score =  159 bits (403), Expect = 3e-37
 Identities = 175/668 (26%), Positives = 272/668 (40%), Gaps = 64/668 (9%)
 Frame = +3

Query: 147  DAQCSRKLLPRLNAFEEKPPKEYKDHGRGPDVLLS---AVSARSSP-----ISAVGEHSS 302
            D Q +R L   + A+E++   ++ D+   P   LS     + R SP      SAVG    
Sbjct: 271  DLQRARGLSSNVRAYEQRSCIQFGDYDFDPPEELSPHHGPARRGSPQIVHASSAVGTERP 330

Query: 303  AS----NANAGAVFSGK---NDLMMSSSPEIRMQRGSQNDFEL---------------EK 416
             S     + AG + S     +     SSP   ++R S ++  +               ++
Sbjct: 331  LSVSKRTSRAGLMRSASPPDDGFQRDSSPGRSVERASPSNLGVGLVAPARLSDRSGWWDR 390

Query: 417  NFCHHAVKRQREIQSIHEHPIDFSNNLPRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMR 596
            N  H     Q     +++    FS   PR LI AYG+ +  ++  E   K Q+L    + 
Sbjct: 391  NG-HAEFAPQLGGPDVYKIQNGFSKQRPRDLIDAYGNYRGKSTSDEKLPKIQRLDVDGIN 449

Query: 597  TDTTIRKWKNSEEEEYLWDNMSPTLTDPSIHMKPTKHDIPQGTYSAEACLRKSNASTPSS 776
             + T RKW+NSEEEEY W++MSPTL D S        D        +  L K N +   S
Sbjct: 450  REATTRKWQNSEEEEYDWEDMSPTLADRSQSSSRIMFDSVVERVGMKPGLSKPNIAVLES 509

Query: 777  WSMPTRHNTTERT----VMLDQREAVNGLGQRPGNGEYNVSAEKGQYLHSQSI-YRGRDS 941
                  HN  +       ++++R  V G G+   N +  V   +   LH QS+ +  ++ 
Sbjct: 510  DCKSNWHNRVQLPPVDDTIVEERIPVLGSGRGSMNKKSLVGKGRNDLLHHQSLSHYTQEP 569

Query: 942  WTADHM--QSS-------------KVPAQSSGLPAVCHRRPPSNYPTGSDALM--QRPVN 1070
            W   ++  QSS             ++P    GLP   HR P S Y    D  +   R   
Sbjct: 570  WNLHYVSPQSSHSSLSPRSRGRPIQMPLPLRGLPQTGHR-PASPYDNIPDFEVPPHRLSG 628

Query: 1071 SQADSVDTASLPSLPPASANNHVLRQTYIP-SSHSMHPFKAELPSQSSSIPLKPFQYAGH 1247
               DS++   L + P      H+ ++ + P   H M P    +P     + L+   +   
Sbjct: 629  FHLDSLNMDVLAATPSTLIEKHLAQRPHSPPGGHIMWP---SVPKPLPPVHLR-HGFKRR 684

Query: 1248 SNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP----LAPECHSS 1415
             +S  + ++++  G++ S  +    T  + ++ + + +   +    HP    L  + H  
Sbjct: 685  FDSTEASRTLVNEGSNASMVSPWQKT--DVADVKFVNSVPPQIPCQHPGLISLNQQRHEE 742

Query: 1416 VPQSHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDL--HPSSVI 1589
               +   P+E  GN  PPA      L        +QI              L    SSV 
Sbjct: 743  TTIAGLQPQEIHGNLIPPASAQMPSLSLVRPLNPLQIQGHSALSSVLPSTSLGISSSSVA 802

Query: 1590 MGRKSGNPDLQYGGALPSLPP-----RMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXX 1754
            +     +    +GG LP LPP       HT    QS     G++I+N+            
Sbjct: 803  VHSLVNSSAHIHGGGLPPLPPGPPPASSHTGPVSQSA----GSIISNAPSLPISGLISSL 858

Query: 1755 XXXXXXXXPSVAAPKDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHS 1934
                    P     KD V +EFN E LK R++S ++ LY ++PRQC TCGLRF+ QE HS
Sbjct: 859  VAQGLISLPPPTLSKDSVGIEFNVELLKVRHESAINALYIDLPRQCTTCGLRFKHQEDHS 918

Query: 1935 THMDWHVT 1958
             HMDWHVT
Sbjct: 919  NHMDWHVT 926


>XP_010275999.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Nelumbo nucifera]
          Length = 895

 Score =  144 bits (362), Expect = 4e-32
 Identities = 164/629 (26%), Positives = 259/629 (41%), Gaps = 63/629 (10%)
 Frame = +3

Query: 261  ARSSPISAVGEHSSASNANAGAVFSGKNDLMMSSSPEIRMQR---GSQNDFELEKNFCHH 431
            ARSS  + +G  S     +  A+ +    ++  +SP         G   D + EK+    
Sbjct: 143  ARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSEYGPGKATDGDGEKSEWWF 202

Query: 432  AVKRQREIQSIHEHPIDFSNNLPRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTI 611
              + Q E    +          PRALI AYG+ +  N+    P K ++L    + +    
Sbjct: 203  KCQ-QMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKPLKVERLDINGINSKEVS 261

Query: 612  RKWKNSEEEEYLWDNMSPTLTDPSIHMKPTKHDIPQGTYSAEACL-RKSNASTPSSWSMP 788
            ++W+N+EEEEY+W++MSPTLTD S        + P G+ S    L R S A   S +   
Sbjct: 262  KRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRTGLERPSTAILESDFRRG 321

Query: 789  TRHNTTERTVMLDQR----EAVNGLGQ---RPGNGEYNVSAEKGQYLHSQSIYRGRDSWT 947
               N  + + M D      + V+ LG      GN        + +  H QS +  ++   
Sbjct: 322  NWPNQVQLSTMDDAAFISGDGVSILGSGHVTMGNNSLRCPQTQNESSHVQSSHHSQEPQN 381

Query: 948  ADHM--QSSK-------------VPAQSSGLPAVCHRRPPSNYPTGSDA---------LM 1055
              H   QSS+             +   ++G+     ++ PS      D          ++
Sbjct: 382  FPHQFPQSSQEHLDLKARGRAVQMSFPAAGVVPSAIKKMPSQVDNFLDTDAQFQRFSGVV 441

Query: 1056 QRPVNSQADSVDTASLPSL-PPASA-NNH----------VLRQTYIPSSH-----SMHPF 1184
             R  +S  D+++  +L ++ PPASA   H          V     +P SH     S+ P 
Sbjct: 442  SRMGSSNRDTMNVEALSTMMPPASALQKHRGQRPSLAPLVWPPVNVPKSHPPPPLSVLPQ 501

Query: 1185 KAELPSQS-----SSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPR 1349
            + ++ SQS     S IP K     G    V           +L+P+       ++     
Sbjct: 502  QNQIKSQSNIMDISRIPNKSLTLPGQHLGV-------IERNTLTPTKLLQFPNQQAGLIS 554

Query: 1350 VLMAASGECSVLHPLAPECHSSVPQSHFLP----RESCGNKEPPARTYDAVLPPGHLAEH 1517
            +   + G+ S  H  A    S   Q +F+P    + S    E P       +P GHL+  
Sbjct: 555  LNQRSQGQAS--HLPAQPLMSQNAQENFVPSAVAQMSTHKMEQPLN--HGHIPQGHLSVT 610

Query: 1518 VQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPSLPPRMH-TNAQMQSTAHN 1694
              I              L  SSV +   S  P    G ALP LPP     ++Q++  + N
Sbjct: 611  SSILPNPIPG-------LASSSVTIHGLSNTPFHLPGRALPPLPPGPPPVSSQIEPISQN 663

Query: 1695 TGTMITN-SAXXXXXXXXXXXXXXXXXXXPSVAAPKDFVSLEFNHEHLKARNQSVVDNLY 1871
             G + T+ S+                    + A+ +D + +EFN + LK R++S +  LY
Sbjct: 664  VGPIATHASSGSAFSGLISSLMAQGLISLTTPASVQDSIGVEFNLDLLKVRHESAIKALY 723

Query: 1872 DNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
             ++PRQC TCGLRF+CQE+HS+HMDWHVT
Sbjct: 724  ADLPRQCTTCGLRFKCQEEHSSHMDWHVT 752


>XP_010275998.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Nelumbo nucifera]
          Length = 1071

 Score =  144 bits (362), Expect = 5e-32
 Identities = 164/629 (26%), Positives = 259/629 (41%), Gaps = 63/629 (10%)
 Frame = +3

Query: 261  ARSSPISAVGEHSSASNANAGAVFSGKNDLMMSSSPEIRMQR---GSQNDFELEKNFCHH 431
            ARSS  + +G  S     +  A+ +    ++  +SP         G   D + EK+    
Sbjct: 319  ARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSEYGPGKATDGDGEKSEWWF 378

Query: 432  AVKRQREIQSIHEHPIDFSNNLPRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTI 611
              + Q E    +          PRALI AYG+ +  N+    P K ++L    + +    
Sbjct: 379  KCQ-QMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKPLKVERLDINGINSKEVS 437

Query: 612  RKWKNSEEEEYLWDNMSPTLTDPSIHMKPTKHDIPQGTYSAEACL-RKSNASTPSSWSMP 788
            ++W+N+EEEEY+W++MSPTLTD S        + P G+ S    L R S A   S +   
Sbjct: 438  KRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRTGLERPSTAILESDFRRG 497

Query: 789  TRHNTTERTVMLDQR----EAVNGLGQ---RPGNGEYNVSAEKGQYLHSQSIYRGRDSWT 947
               N  + + M D      + V+ LG      GN        + +  H QS +  ++   
Sbjct: 498  NWPNQVQLSTMDDAAFISGDGVSILGSGHVTMGNNSLRCPQTQNESSHVQSSHHSQEPQN 557

Query: 948  ADHM--QSSK-------------VPAQSSGLPAVCHRRPPSNYPTGSDA---------LM 1055
              H   QSS+             +   ++G+     ++ PS      D          ++
Sbjct: 558  FPHQFPQSSQEHLDLKARGRAVQMSFPAAGVVPSAIKKMPSQVDNFLDTDAQFQRFSGVV 617

Query: 1056 QRPVNSQADSVDTASLPSL-PPASA-NNH----------VLRQTYIPSSH-----SMHPF 1184
             R  +S  D+++  +L ++ PPASA   H          V     +P SH     S+ P 
Sbjct: 618  SRMGSSNRDTMNVEALSTMMPPASALQKHRGQRPSLAPLVWPPVNVPKSHPPPPLSVLPQ 677

Query: 1185 KAELPSQS-----SSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPR 1349
            + ++ SQS     S IP K     G    V           +L+P+       ++     
Sbjct: 678  QNQIKSQSNIMDISRIPNKSLTLPGQHLGV-------IERNTLTPTKLLQFPNQQAGLIS 730

Query: 1350 VLMAASGECSVLHPLAPECHSSVPQSHFLP----RESCGNKEPPARTYDAVLPPGHLAEH 1517
            +   + G+ S  H  A    S   Q +F+P    + S    E P       +P GHL+  
Sbjct: 731  LNQRSQGQAS--HLPAQPLMSQNAQENFVPSAVAQMSTHKMEQPLN--HGHIPQGHLSVT 786

Query: 1518 VQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPSLPPRMH-TNAQMQSTAHN 1694
              I              L  SSV +   S  P    G ALP LPP     ++Q++  + N
Sbjct: 787  SSILPNPIPG-------LASSSVTIHGLSNTPFHLPGRALPPLPPGPPPVSSQIEPISQN 839

Query: 1695 TGTMITN-SAXXXXXXXXXXXXXXXXXXXPSVAAPKDFVSLEFNHEHLKARNQSVVDNLY 1871
             G + T+ S+                    + A+ +D + +EFN + LK R++S +  LY
Sbjct: 840  VGPIATHASSGSAFSGLISSLMAQGLISLTTPASVQDSIGVEFNLDLLKVRHESAIKALY 899

Query: 1872 DNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
             ++PRQC TCGLRF+CQE+HS+HMDWHVT
Sbjct: 900  ADLPRQCTTCGLRFKCQEEHSSHMDWHVT 928


>XP_016683610.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X3 [Gossypium hirsutum]
          Length = 826

 Score =  141 bits (356), Expect = 2e-31
 Identities = 136/506 (26%), Positives = 210/506 (41%), Gaps = 20/506 (3%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 178  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 237

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 238  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 297

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W                +P +   
Sbjct: 298  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFWMPFAASGISSLGGDKNVPLIEKL 354

Query: 1014 RPPSNYPTGSDALMQRPVNSQADSVDTASLPSLPPASANNHV---LRQTYIPSSHSMHPF 1184
                +      AL+ R  +S  D+V   + P++ P +A       + ++  P++H+ +  
Sbjct: 355  PEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVHKSQPPNAHTNYSL 414

Query: 1185 KAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPRVLMAA 1364
            +    S   S+           N + +  +  ++     P  F N   +E S  + +   
Sbjct: 415  QQHGRSHFDSL-----------NPINAAMNQGQNKHPYMPEQFDNFESKEQSL-KTVPQL 462

Query: 1365 SGECSVLHPLAPECHSSVPQSHFLPRESCGNKEPPARTYDAVLPPGHLA---EHVQIXXX 1535
             G+   L       H S+ Q HF P E+   ++    +    LPP  LA    H      
Sbjct: 463  PGQRPALQQ-RNSLHGSL-QPHFPPHEA---RDSFLSSATGPLPPRLLAPSMNHGYSPQM 517

Query: 1536 XXXXXXXXXCDL----HPSSVIMGRKSGNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGT 1703
                      +L     P   I    +G+  LQ GGA+P LPP     +QM   A N G 
Sbjct: 518  HGASISMVPSNLVPVAQPPLSIPNMPTGSLHLQ-GGAMPPLPPGPRPASQMMPAAQNAGP 576

Query: 1704 MITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNI 1880
            ++ N                      +   P +D V LEF+ + LK R++S +  LY ++
Sbjct: 577  LLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADL 636

Query: 1881 PRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 637  PRQCTTCGLRFKFQEEHSTHMDWHVT 662


>KJB67159.1 hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 980

 Score =  141 bits (356), Expect = 2e-31
 Identities = 147/539 (27%), Positives = 215/539 (39%), Gaps = 53/539 (9%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 352  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 411

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 412  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 471

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W         +P  +SG+ ++   
Sbjct: 472  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFW---------IPFSASGISSLGGE 519

Query: 1014 RPP---SNYPTGSD------ALMQRPVNSQADSVDTASLPSL-----------------P 1115
            +        P G        AL+ R  +S  D+V   + P++                 P
Sbjct: 520  KNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVPKSQP 579

Query: 1116 PASANNHVLRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLR---- 1283
            P +  N+ L+Q       S++P  A +    +  P  P Q+    +   S K++ +    
Sbjct: 580  PNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQ 639

Query: 1284 ----------HGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQ 1424
                      HG SL P    ND     +    L +A+G    L P  LAP   H   PQ
Sbjct: 640  RPALQQRNSLHG-SLQPHFPPND-----ARDSFLSSATGP---LPPRLLAPSMNHGYSPQ 690

Query: 1425 SHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKS 1604
             H       G    P+       PP                             I    +
Sbjct: 691  MH-----GAGISMVPSNPIPVAQPP---------------------------LSIPNMPT 718

Query: 1605 GNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPS 1784
            G+  LQ GGA+P LPP     +QM   A N G ++ N                      +
Sbjct: 719  GSLHLQ-GGAMPPLPPGPRPTSQMMPAAQNAGPLLPNQPQGGPFTGLISSLMAQGLISLT 777

Query: 1785 VAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
               P +D V LEF+ + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 778  KPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 836


>XP_012450329.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Gossypium raimondii]
          Length = 1001

 Score =  141 bits (356), Expect = 2e-31
 Identities = 147/539 (27%), Positives = 215/539 (39%), Gaps = 53/539 (9%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 436  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 495

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W         +P  +SG+ ++   
Sbjct: 496  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFW---------IPFSASGISSLGGE 543

Query: 1014 RPP---SNYPTGSD------ALMQRPVNSQADSVDTASLPSL-----------------P 1115
            +        P G        AL+ R  +S  D+V   + P++                 P
Sbjct: 544  KNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVPKSQP 603

Query: 1116 PASANNHVLRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLR---- 1283
            P +  N+ L+Q       S++P  A +    +  P  P Q+    +   S K++ +    
Sbjct: 604  PNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQ 663

Query: 1284 ----------HGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQ 1424
                      HG SL P    ND     +    L +A+G    L P  LAP   H   PQ
Sbjct: 664  RPALQQRNSLHG-SLQPHFPPND-----ARDSFLSSATGP---LPPRLLAPSMNHGYSPQ 714

Query: 1425 SHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKS 1604
             H       G    P+       PP                             I    +
Sbjct: 715  MH-----GAGISMVPSNPIPVAQPP---------------------------LSIPNMPT 742

Query: 1605 GNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPS 1784
            G+  LQ GGA+P LPP     +QM   A N G ++ N                      +
Sbjct: 743  GSLHLQ-GGAMPPLPPGPRPTSQMMPAAQNAGPLLPNQPQGGPFTGLISSLMAQGLISLT 801

Query: 1785 VAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
               P +D V LEF+ + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 802  KPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_016683609.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X2 [Gossypium hirsutum]
          Length = 1004

 Score =  141 bits (356), Expect = 2e-31
 Identities = 136/506 (26%), Positives = 210/506 (41%), Gaps = 20/506 (3%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 436  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 495

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W                +P +   
Sbjct: 496  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFWMPFAASGISSLGGDKNVPLIEKL 552

Query: 1014 RPPSNYPTGSDALMQRPVNSQADSVDTASLPSLPPASANNHV---LRQTYIPSSHSMHPF 1184
                +      AL+ R  +S  D+V   + P++ P +A       + ++  P++H+ +  
Sbjct: 553  PEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVHKSQPPNAHTNYSL 612

Query: 1185 KAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPRVLMAA 1364
            +    S   S+           N + +  +  ++     P  F N   +E S  + +   
Sbjct: 613  QQHGRSHFDSL-----------NPINAAMNQGQNKHPYMPEQFDNFESKEQSL-KTVPQL 660

Query: 1365 SGECSVLHPLAPECHSSVPQSHFLPRESCGNKEPPARTYDAVLPPGHLA---EHVQIXXX 1535
             G+   L       H S+ Q HF P E+   ++    +    LPP  LA    H      
Sbjct: 661  PGQRPALQQ-RNSLHGSL-QPHFPPHEA---RDSFLSSATGPLPPRLLAPSMNHGYSPQM 715

Query: 1536 XXXXXXXXXCDL----HPSSVIMGRKSGNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGT 1703
                      +L     P   I    +G+  LQ GGA+P LPP     +QM   A N G 
Sbjct: 716  HGASISMVPSNLVPVAQPPLSIPNMPTGSLHLQ-GGAMPPLPPGPRPASQMMPAAQNAGP 774

Query: 1704 MITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNI 1880
            ++ N                      +   P +D V LEF+ + LK R++S +  LY ++
Sbjct: 775  LLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADL 834

Query: 1881 PRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 835  PRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_012450328.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Gossypium raimondii] KJB67156.1 hypothetical protein
            B456_010G178200 [Gossypium raimondii]
          Length = 1004

 Score =  141 bits (356), Expect = 2e-31
 Identities = 147/539 (27%), Positives = 215/539 (39%), Gaps = 53/539 (9%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 436  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 495

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W         +P  +SG+ ++   
Sbjct: 496  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFW---------IPFSASGISSLGGE 543

Query: 1014 RPP---SNYPTGSD------ALMQRPVNSQADSVDTASLPSL-----------------P 1115
            +        P G        AL+ R  +S  D+V   + P++                 P
Sbjct: 544  KNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVPKSQP 603

Query: 1116 PASANNHVLRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLR---- 1283
            P +  N+ L+Q       S++P  A +    +  P  P Q+    +   S K++ +    
Sbjct: 604  PNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQ 663

Query: 1284 ----------HGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQ 1424
                      HG SL P    ND     +    L +A+G    L P  LAP   H   PQ
Sbjct: 664  RPALQQRNSLHG-SLQPHFPPND-----ARDSFLSSATGP---LPPRLLAPSMNHGYSPQ 714

Query: 1425 SHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKS 1604
             H       G    P+       PP                             I    +
Sbjct: 715  MH-----GAGISMVPSNPIPVAQPP---------------------------LSIPNMPT 742

Query: 1605 GNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPS 1784
            G+  LQ GGA+P LPP     +QM   A N G ++ N                      +
Sbjct: 743  GSLHLQ-GGAMPPLPPGPRPTSQMMPAAQNAGPLLPNQPQGGPFTGLISSLMAQGLISLT 801

Query: 1785 VAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
               P +D V LEF+ + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 802  KPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_016683608.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X1 [Gossypium hirsutum]
          Length = 1024

 Score =  141 bits (356), Expect = 3e-31
 Identities = 136/506 (26%), Positives = 210/506 (41%), Gaps = 20/506 (3%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 436  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 495

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W                +P +   
Sbjct: 496  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFWMPFAASGISSLGGDKNVPLIEKL 552

Query: 1014 RPPSNYPTGSDALMQRPVNSQADSVDTASLPSLPPASANNHV---LRQTYIPSSHSMHPF 1184
                +      AL+ R  +S  D+V   + P++ P +A       + ++  P++H+ +  
Sbjct: 553  PEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVHKSQPPNAHTNYSL 612

Query: 1185 KAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPSTFSNDTYREPSEPRVLMAA 1364
            +    S   S+           N + +  +  ++     P  F N   +E S  + +   
Sbjct: 613  QQHGRSHFDSL-----------NPINAAMNQGQNKHPYMPEQFDNFESKEQSL-KTVPQL 660

Query: 1365 SGECSVLHPLAPECHSSVPQSHFLPRESCGNKEPPARTYDAVLPPGHLA---EHVQIXXX 1535
             G+   L       H S+ Q HF P E+   ++    +    LPP  LA    H      
Sbjct: 661  PGQRPALQQ-RNSLHGSL-QPHFPPHEA---RDSFLSSATGPLPPRLLAPSMNHGYSPQM 715

Query: 1536 XXXXXXXXXCDL----HPSSVIMGRKSGNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGT 1703
                      +L     P   I    +G+  LQ GGA+P LPP     +QM   A N G 
Sbjct: 716  HGASISMVPSNLVPVAQPPLSIPNMPTGSLHLQ-GGAMPPLPPGPRPASQMMPAAQNAGP 774

Query: 1704 MITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNI 1880
            ++ N                      +   P +D V LEF+ + LK R++S +  LY ++
Sbjct: 775  LLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADL 834

Query: 1881 PRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 835  PRQCTTCGLRFKFQEEHSTHMDWHVT 860


>KJB67158.1 hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 1024

 Score =  141 bits (356), Expect = 3e-31
 Identities = 147/539 (27%), Positives = 215/539 (39%), Gaps = 53/539 (9%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWS-MPTRHNTTERTVMLDQREAVNGLGQ 857
              +          G+  A     +SN S+ S+ + +    ++T     +    + +GL Q
Sbjct: 436  RSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDAVPSLSSGHGLNQ 495

Query: 858  --RPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCHR 1013
              RP    Y   A    Y  SQS +      RGRD W         +P  +SG+ ++   
Sbjct: 496  IQRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFW---------IPFSASGISSLGGE 543

Query: 1014 RPP---SNYPTGSD------ALMQRPVNSQADSVDTASLPSL-----------------P 1115
            +        P G        AL+ R  +S  D+V   + P++                 P
Sbjct: 544  KNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVPKSQP 603

Query: 1116 PASANNHVLRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLR---- 1283
            P +  N+ L+Q       S++P  A +    +  P  P Q+    +   S K++ +    
Sbjct: 604  PNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQLPGQ 663

Query: 1284 ----------HGTSLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQ 1424
                      HG SL P    ND     +    L +A+G    L P  LAP   H   PQ
Sbjct: 664  RPALQQRNSLHG-SLQPHFPPND-----ARDSFLSSATGP---LPPRLLAPSMNHGYSPQ 714

Query: 1425 SHFLPRESCGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKS 1604
             H       G    P+       PP                             I    +
Sbjct: 715  MH-----GAGISMVPSNPIPVAQPP---------------------------LSIPNMPT 742

Query: 1605 GNPDLQYGGALPSLPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPS 1784
            G+  LQ GGA+P LPP     +QM   A N G ++ N                      +
Sbjct: 743  GSLHLQ-GGAMPPLPPGPRPTSQMMPAAQNAGPLLPNQPQGGPFTGLISSLMAQGLISLT 801

Query: 1785 VAAP-KDFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
               P +D V LEF+ + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 802  KPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_017645983.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Gossypium arboreum]
          Length = 1001

 Score =  136 bits (343), Expect = 1e-29
 Identities = 147/526 (27%), Positives = 208/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDLNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 436  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 495

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 496  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 551

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 552  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 611

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 612  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 671

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 672  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 722

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 723  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 754

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LPP     +QM     N G ++ N                      +   P +D V LEF
Sbjct: 755  LPPGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 814

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 815  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_017645981.1 PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Gossypium arboreum] KHG24664.1 Pre-mRNA cleavage complex
            2 Pcf11 [Gossypium arboreum]
          Length = 1004

 Score =  136 bits (343), Expect = 1e-29
 Identities = 147/526 (27%), Positives = 208/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDLNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 436  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 495

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 496  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 551

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 552  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 611

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 612  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 671

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 672  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 722

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 723  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 754

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LPP     +QM     N G ++ N                      +   P +D V LEF
Sbjct: 755  LPPGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 814

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 815  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_010909642.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like [Elaeis
            guineensis]
          Length = 1053

 Score =  135 bits (341), Expect = 2e-29
 Identities = 143/533 (26%), Positives = 221/533 (41%), Gaps = 41/533 (7%)
 Frame = +3

Query: 483  FSNNLPRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMS 662
            ++    R LI AYG+    ++  E   K Q++    + ++   RKWKNSEEEEY+W++MS
Sbjct: 410  YAKQRSRELIDAYGNYTGKSASLEKLPKVQRVDVNSVASERAARKWKNSEEEEYVWEDMS 469

Query: 663  PTLTDPSIH--MKPTKHDIPQGTYSAEACLRKSNAST----------PSSWSMPTRHNTT 806
            PTL+D S    + P    +P    S  A L + +AS           P    +P      
Sbjct: 470  PTLSDRSRRNSLPPFGPSLPP--LSTRAGLTRPDASLLDHDSGRRSWPGQAQLPA---VG 524

Query: 807  ERTVMLDQREAVNGLGQRPGNGEYNVSAEKGQ-----YLHSQSIYRGRD-----SWTADH 956
            +    ++ R  V G      N +Y  S          Y  SQ +++ R        +A H
Sbjct: 525  DSAFTIEDRIPVFGSAHGSMNRKYLDSTVSQNDWLPHYQGSQHMHQPRKLPFMFPKSAQH 584

Query: 957  MQSSK-------VPAQSSGL-PAVCHRRP-PSNYPTGSDALMQRPVNSQAD--SVDTASL 1103
              S +       +P  +SG+ P V ++ P P  + T  +   QR  +S +D   VDT++L
Sbjct: 585  SLSPQSRGRAHQMPVAASGITPLVINKLPSPYEHTTDLEVPFQRLSSSHSDPFDVDTSTL 644

Query: 1104 PSLPPASANNHVLRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQ--YAGHSNSVGSGKSM 1277
                      H+ ++ + P    +         Q   +P+ P Q  +    + V + K +
Sbjct: 645  --------ERHLTQRPHSPPPAPIIWPPVHNTQQLPLLPIPPNQKQFKSSFDHVEANKPI 696

Query: 1278 L--RHGTSLSPSTFSNDTY-REPSEPRVLMAASGECSVLHPLAPECHSSVPQSHFLPRES 1448
            L  R  +  + S + NDT  R+ S    L+    +   L     +            ++S
Sbjct: 697  LNQRPESFFNLSQYQNDTADRKISNSNKLLQLPYQQPGLAHANQQSQEQGASMQIQSQKS 756

Query: 1449 CGNKEPPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLH--PSSVIMGRKSGNPDLQ 1622
             G+   PA    +         HVQ               L   PSSV +          
Sbjct: 757  NGSILSPAPAQLSSQIVAQPLNHVQTSGQGIAMGSVLHNQLSGLPSSVAVNSVPDTSLRV 816

Query: 1623 YGGALPSLPPRMH-TNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAPK 1799
                LP LPP     ++QM     NTG+MI++S                          +
Sbjct: 817  NASVLPPLPPGPPPASSQMGPVLQNTGSMISSSPAGAFSGLISTLMAQGLISLTPPDQSQ 876

Query: 1800 DFVSLEFNHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            D V +EFN E LK R++S ++ LY ++PRQC TCGLRF+CQE+HS+HMDWHVT
Sbjct: 877  DSVGVEFNAELLKVRHESAINALYTDLPRQCTTCGLRFKCQEEHSSHMDWHVT 929


>XP_007026008.2 PREDICTED: polyadenylation and cleavage factor homolog 4 [Theobroma
            cacao]
          Length = 1001

 Score =  134 bits (337), Expect = 6e-29
 Identities = 138/525 (26%), Positives = 219/525 (41%), Gaps = 38/525 (7%)
 Frame = +3

Query: 498  PRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTD 677
            PRALI AYG+ +        P++ ++L    M    T   W+N+EEEE+ W++MSPTL D
Sbjct: 367  PRALIDAYGNDRGKGISNSKPAQVERLAVNGMGNKVTPISWQNTEEEEFDWEDMSPTLAD 426

Query: 678  PSIHMKPTKHDIPQ-GTYSAEACLRKSNASTPSSWSMPTRHNTTERTVMLDQREAVNGLG 854
             S     +   +P  G+        +SN+ +  +        T  +  ++D    +    
Sbjct: 427  RSRSNDFSLSSVPPFGSIGERPAGLESNSRSSRA--------TQTQLPLVDDSSTI---- 474

Query: 855  QRPGNGEYNVSAEKG--QYLHSQSIYRGRDSWTADHMQSS--------------KVPAQS 986
              P N   ++S+ +G  Q LHS   +  +++W + +  S               ++P  +
Sbjct: 475  --PKNAVSSLSSGRGSSQILHS---HHPQEAWNSSYHFSQPSRNLHAKGRGRDFQIPFSA 529

Query: 987  SGLPAVCHRRPP---SNYPTGSDALMQRPV------NSQADSVDTASLPSLPPASANNHV 1139
            SG+ ++   +        P G    ++ P       +S  DSV   + P++ P++     
Sbjct: 530  SGIQSLGGEKIVPLIDKLPDGGSQFLRPPAVVPRTGSSSLDSVTVGARPAIIPSTTGVWP 589

Query: 1140 ---LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPST 1310
               + ++  P+ HS +  +    SQ  SI           N +    +   +  S     
Sbjct: 590  PVNVHKSQPPAMHSNYSLQQHSRSQFDSI-----------NPINMVMNEGPNKRSYMAEQ 638

Query: 1311 FSNDTYREPSEPRVLMAASGECSVLHPLAPECHSSVPQSHFLPRESCGNKEPPARTYDAV 1490
            F     +E S  RV      + + LH       +S+ Q HFLP +    +E    +  A 
Sbjct: 639  FDRFESKEQSLTRVPQLPD-QRAALHQRNQMQVTSL-QPHFLPSQDL--RENFLSSATAP 694

Query: 1491 LPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNP-------DLQY-GGALPSL 1646
            LPP  LA    +              + PS+ I   +   P        LQ  GGALP L
Sbjct: 695  LPPRLLAP--SLNHGYTPQMHGAVISMVPSNPIHVAQPPLPIPNMPTVSLQLQGGALPPL 752

Query: 1647 PPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEFN 1823
            PP     +QM     N G ++ N A                    +   P +D V LEFN
Sbjct: 753  PPGPPPASQMIPATQNAGPLLPNQAQSGPYSGLISSLMAQGLISLTKPTPIQDPVGLEFN 812

Query: 1824 HEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
             + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 813  ADLLKVRHESSISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 857


>EOY28630.1 PCF11P-similar protein 4, putative isoform 1 [Theobroma cacao]
          Length = 1004

 Score =  134 bits (337), Expect = 6e-29
 Identities = 138/525 (26%), Positives = 219/525 (41%), Gaps = 38/525 (7%)
 Frame = +3

Query: 498  PRALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTD 677
            PRALI AYG+ +        P++ ++L    M    T   W+N+EEEE+ W++MSPTL D
Sbjct: 370  PRALIDAYGNDRGKGISNSKPAQVERLAVNGMGNKVTPISWQNTEEEEFDWEDMSPTLAD 429

Query: 678  PSIHMKPTKHDIPQ-GTYSAEACLRKSNASTPSSWSMPTRHNTTERTVMLDQREAVNGLG 854
             S     +   +P  G+        +SN+ +  +        T  +  ++D    +    
Sbjct: 430  RSRSNDFSLSSVPPFGSIGERPAGLESNSRSSRA--------TQTQLPLVDDSSTI---- 477

Query: 855  QRPGNGEYNVSAEKG--QYLHSQSIYRGRDSWTADHMQSS--------------KVPAQS 986
              P N   ++S+ +G  Q LHS   +  +++W + +  S               ++P  +
Sbjct: 478  --PKNAVSSLSSGRGSSQILHS---HHPQEAWNSSYHFSQPSRNLHAKGRGRDFQIPFSA 532

Query: 987  SGLPAVCHRRPP---SNYPTGSDALMQRPV------NSQADSVDTASLPSLPPASANNHV 1139
            SG+ ++   +        P G    ++ P       +S  DSV   + P++ P++     
Sbjct: 533  SGIQSLGGEKIVPLIDKLPDGGSQFLRPPAVVPRTGSSSLDSVTVGARPAIIPSTTGVWP 592

Query: 1140 ---LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGSGKSMLRHGTSLSPST 1310
               + ++  P+ HS +  +    SQ  SI           N +    +   +  S     
Sbjct: 593  PVNVHKSQPPAMHSNYSLQQHSRSQFDSI-----------NPINMVMNEGPNKRSYMAEQ 641

Query: 1311 FSNDTYREPSEPRVLMAASGECSVLHPLAPECHSSVPQSHFLPRESCGNKEPPARTYDAV 1490
            F     +E S  RV      + + LH       +S+ Q HFLP +    +E    +  A 
Sbjct: 642  FDRFESKEQSLTRVPQLPD-QRAALHQRNQMQVTSL-QPHFLPSQDL--RENFLSSATAP 697

Query: 1491 LPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNP-------DLQY-GGALPSL 1646
            LPP  LA    +              + PS+ I   +   P        LQ  GGALP L
Sbjct: 698  LPPRLLAP--SLNHGYTPQMHGAVISMVPSNPIHVAQPPLPIPNMPTVSLQLQGGALPPL 755

Query: 1647 PPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEFN 1823
            PP     +QM     N G ++ N A                    +   P +D V LEFN
Sbjct: 756  PPGPPPASQMIPATQNAGPLLPNQAQSGPYSGLISSLMAQGLISLTKPTPIQDPVGLEFN 815

Query: 1824 HEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
             + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 816  ADLLKVRHESSISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_016753659.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X4 [Gossypium hirsutum]
          Length = 858

 Score =  134 bits (336), Expect = 6e-29
 Identities = 146/526 (27%), Positives = 207/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 210  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 269

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 270  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 329

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 330  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 385

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 386  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 445

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 446  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 505

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 506  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 556

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 557  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 588

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LP      +QM     N G ++ N                      +   P +D V LEF
Sbjct: 589  LPSGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 648

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 649  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 694


>XP_016753658.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X3 [Gossypium hirsutum]
          Length = 1001

 Score =  134 bits (336), Expect = 7e-29
 Identities = 146/526 (27%), Positives = 207/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 436  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 495

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 496  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 551

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 552  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 611

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 612  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 671

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 672  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 722

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 723  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 754

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LP      +QM     N G ++ N                      +   P +D V LEF
Sbjct: 755  LPSGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 814

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 815  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_016753657.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X2 [Gossypium hirsutum]
          Length = 1004

 Score =  134 bits (336), Expect = 7e-29
 Identities = 146/526 (27%), Positives = 207/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 436  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 495

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 496  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 551

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 552  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 611

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 612  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 671

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 672  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 722

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 723  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 754

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LP      +QM     N G ++ N                      +   P +D V LEF
Sbjct: 755  LPSGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 814

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 815  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860


>XP_016753656.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X1 [Gossypium hirsutum]
          Length = 1024

 Score =  134 bits (336), Expect = 8e-29
 Identities = 146/526 (27%), Positives = 207/526 (39%), Gaps = 40/526 (7%)
 Frame = +3

Query: 501  RALIQAYGSSKPSNSHPEMPSKFQKLGDKRMRTDTTIRKWKNSEEEEYLWDNMSPTLTDP 680
            RALI AYG+ +        P + ++L    M    T R W+N+EEEE+ W++MSPTL D 
Sbjct: 376  RALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEEEFDWEDMSPTLADR 435

Query: 681  SIHMKPTKHDIPQGTYSAEACLRKSNASTPSSWSMPTRHNTT---ERTV-MLDQREAVNG 848
              +          G+  A     +SN S+ S+ +      ++   E TV  L     +N 
Sbjct: 436  RSNEFSVSSVSTFGSIGARPAGLESNRSSRSNQTQLALDESSTIPEDTVPSLSSGHGLNQ 495

Query: 849  LGQRPGNGEYNVSAEKGQYLHSQSIY------RGRDSWTADHMQSSKVPAQSSGLPAVCH 1010
            + QRP    Y   A    Y  SQS +      RGRD  T               +P +  
Sbjct: 496  I-QRP---RYPQDAWSNSYPFSQSSHQLHAKGRGRDFRTPFSASGISSLGGDKNVPLIEK 551

Query: 1011 R--------RPPSNYP-TGSDALMQRPVNSQADSVDTAS--------LPSLPPASANNHV 1139
                     RPP+  P +GS +L    V +Q   +   +        L S PP +  N+ 
Sbjct: 552  LPEGGSQFVRPPALVPRSGSSSLDTVTVGAQPAMLPLTAGAWPPVNVLKSQPPTAHTNYS 611

Query: 1140 LRQTYIPSSHSMHPFKAELPSQSSSIPLKPFQYAGHSNSVGS---------GKSMLRHGT 1292
            L+Q       S++P  A +    +  P  P Q+    +   S          +  LR   
Sbjct: 612  LQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLTTVPQLPGQRPALRQRN 671

Query: 1293 SLSPSTFSNDTYREPSEPRVLMAASGECSVLHP--LAPEC-HSSVPQSHFLPRESCGNKE 1463
            SL  S   + T  E  +   L +A+G    L P  LAP   H   PQ H       G   
Sbjct: 672  SLHGSLQLHFTPHEARDS-FLSSATGP---LPPRLLAPSMNHGYSPQMH-----GAGISM 722

Query: 1464 PPARTYDAVLPPGHLAEHVQIXXXXXXXXXXXXCDLHPSSVIMGRKSGNPDLQYGGALPS 1643
             P+       PP                             I    +G+  LQ GGA+P 
Sbjct: 723  VPSNPVPVAQPP---------------------------LSIPNMPTGSLHLQ-GGAIPP 754

Query: 1644 LPPRMHTNAQMQSTAHNTGTMITNSAXXXXXXXXXXXXXXXXXXXPSVAAP-KDFVSLEF 1820
            LP      +QM     N G ++ N                      +   P +D V LEF
Sbjct: 755  LPSGPRPASQMMPATQNAGPLLPNQPQGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEF 814

Query: 1821 NHEHLKARNQSVVDNLYDNIPRQCRTCGLRFRCQEKHSTHMDWHVT 1958
            + + LK R++S +  LY ++PRQC TCGLRF+ QE+HSTHMDWHVT
Sbjct: 815  DADLLKVRHESAISALYADLPRQCTTCGLRFKFQEEHSTHMDWHVT 860