BLASTX nr result
ID: Alisma22_contig00022895
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Alisma22_contig00022895
(999 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP72325.1 Retrovirus-related Pol polyprotein from transposon TN... 348 e-113
EEE51974.1 hypothetical protein OsJ_33644 [Oryza sativa Japonica... 348 e-112
JAT53147.1 Retrovirus-related Pol polyprotein from transposon TN... 343 e-111
ABA94191.1 retrotransposon protein, putative, Ty1-copia subclass... 351 e-109
AAV31347.1 putative polyprotein [Oryza sativa Japonica Group] 350 e-109
ABA95768.1 retrotransposon protein, putative, Ty1-copia subclass... 352 e-109
CAE04792.1 OSJNBb0018J12.5 [Oryza sativa Japonica Group] 354 e-109
ABA93554.1 retrotransposon protein, putative, Ty1-copia subclass... 340 e-108
ABA99473.2 retrotransposon protein, putative, Ty1-copia subclass... 352 e-108
AAG03096.2 putative polyprotein [Oryza sativa Japonica Group] AA... 352 e-108
AAK50117.1 putative gag-pol polyprotein [Oryza sativa Japonica G... 350 e-108
ABF98465.1 retrotransposon protein, putative, Ty1-copia subclass... 350 e-108
AAK71544.1 putative polyprotein [Oryza sativa Japonica Group] 352 e-108
ABF98853.1 retrotransposon protein, putative, Ty1-copia subclass... 352 e-108
CAD40198.2 OSJNBb0043H09.7 [Oryza sativa Japonica Group] 351 e-108
AAX92828.1 retrotransposon protein, putative, Ty1-copia sub-clas... 350 e-108
AAR01682.1 putative gag and pol protein [Oryza sativa Japonica G... 350 e-107
AAR01716.1 putative Gag and Pol polyprotein [Oryza sativa Japoni... 350 e-107
AAK84454.1 putative polyprotein [Oryza sativa Japonica Group] 350 e-107
ABA93525.1 retrotransposon protein, putative, Ty1-copia subclass... 349 e-107
>KYP72325.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 565
Score = 348 bits (892), Expect = e-113
Identities = 175/333 (52%), Positives = 234/333 (70%), Gaps = 1/333 (0%)
Frame = -2
Query: 998 PRKPF-HYVNRNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRK F + V + L+L+H+DIC+ NGV TR K YFITFIDD S+YCYV+L+ K E+
Sbjct: 66 PRKSFQNSVQKETCVLELIHSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSEL 125
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
+KFK+YK E E Q +K LRSDRGGEY+SN EF + HGI+HEVT PY+PQSNGIA
Sbjct: 126 FEKFKVYKAEVENQLEKSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIA 185
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL+DM+N +L +S LP+ +WGEAL TACHILNR+P+K+S +P+ELW+ RKP+LK
Sbjct: 186 ERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLK 245
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YL+VWGCLAKV +P +K++K+GPKTVD +FLGY S YRFL++ S++S I N I+E
Sbjct: 246 YLKVWGCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMES 305
Query: 281 RDATFFEDVFPMKTGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDSKEIVE 102
RDA FFE++FP+K N++S+ T+ S+ + S + E
Sbjct: 306 RDAVFFENIFPLK----NKLSKPVYDTSSSV-----------------LPSSSTVNKDFE 344
Query: 101 PRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQAI 3
PR SKR R + DFG EF ++ +EDDP T+ +A+
Sbjct: 345 PRISKRIRKAKDFGPEFYSFLLEDDPKTYSEAM 377
>EEE51974.1 hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
Length = 679
Score = 348 bits (894), Expect = e-112
Identities = 182/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 215 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 274
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRS+RGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 275 LDYFKIYKAEVENQLDRKIKRLRSNRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 334
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 335 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKNKTPYEIWIGRKPSLS 394
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 395 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 454
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 455 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 505
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 506 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 537
>JAT53147.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 524
Score = 343 bits (879), Expect = e-111
Identities = 173/315 (54%), Positives = 218/315 (69%)
Frame = -2
Query: 947 VHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEVLDKFKIYKKEAETQTR*V 768
VH+D+CE N +R K YFITFIDD S++C ++L+R+KDE L +F +K AE QT
Sbjct: 1 VHSDLCEGNVAHSRGGKMYFITFIDDCSKFCTLYLIRTKDEALSRFMAFKALAENQTGKD 60
Query: 767 LKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIAERKN*TLIDMVNTLLQTS 588
LKRLRSDRGGEYTSN EFC+ +GI+HE+TAPYSP+SNG+AERKN TL+DMVN++L +S
Sbjct: 61 LKRLRSDRGGEYTSNAVHEFCEQNGIIHELTAPYSPESNGVAERKNRTLLDMVNSMLCSS 120
Query: 587 RLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLKYLRVWGCLAKVLVPEHKR 408
LP +WGEAL ACH+LN VP + SP+E W RKP +LRVWGCLAK+ +PE K+
Sbjct: 121 GLPENLWGEALLAACHVLNCVPPRSQKISPYETWFNRKPDYSHLRVWGCLAKIKIPEIKK 180
Query: 407 KKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVELRDATFFEDVFPMKTGVPN 228
+K+GPKTVD +FLGY E S AYRFLI+KSDI+GI NTIVE DA FFED+FPMK+ +
Sbjct: 181 RKIGPKTVDGVFLGYAENSIAYRFLIIKSDINGISENTIVEFGDAVFFEDIFPMKSKINV 240
Query: 227 EVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDSKEIVEPRRSKRPRTSNDFGSEFL 48
E+ D +T TN E+D +EPRRSKR R FG ++
Sbjct: 241 EIEASDLPSTS--------RTN----------ENDSPSLNLEPRRSKRARLEKSFGEDYF 282
Query: 47 TYNVEDDPVTFKQAI 3
T VEDDP T+ +AI
Sbjct: 283 TNLVEDDPNTYGEAI 297
>ABA94191.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1060
Score = 351 bits (901), Expect = e-109
Identities = 184/337 (54%), Positives = 230/337 (68%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP V RNL L+L+H+D+CE NGV T+ K YF+TFIDDA+R+CYV+LL++KDE
Sbjct: 343 PRKPHKAVEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 402
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 403 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 462
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 463 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 522
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 523 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLIVKSEVPDMNVGTIMES 582
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDA FFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 583 RDAIFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 633
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 634 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 665
>AAV31347.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1059
Score = 350 bits (899), Expect = e-109
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 584 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 643
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 644 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 703
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 704 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 763
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 764 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 823
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 824 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 874
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 875 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 906
>ABA95768.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 352 bits (903), Expect = e-109
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 346 PRKPHKAAEERNLALLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 405
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 406 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 465
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 466 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 525
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 526 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 585
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 586 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 636
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 637 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 668
>CAE04792.1 OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 354 bits (909), Expect = e-109
Identities = 184/337 (54%), Positives = 231/337 (68%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+TFIDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR+WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>ABA93554.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group] ABA93555.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 667
Score = 340 bits (871), Expect = e-108
Identities = 180/334 (53%), Positives = 222/334 (66%), Gaps = 3/334 (0%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D CE N V T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 268 PRKPHKAAEERNLAPLELLHSDFCEMNRVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 327
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSD GGE+ SN F FC+ HGI+HE T PYS +SNGIA
Sbjct: 328 LDYFKIYKAEVENQLDRKIKRLRSDSGGEFFSNEFDLFCEEHGIIHERTPPYSLESNGIA 387
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRK SL
Sbjct: 388 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKSSLS 447
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AY+FLIVKS++ + V TI+E
Sbjct: 448 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYQSIAYKFLIVKSEVPDMHVGTIMES 507
Query: 281 RDATFFEDVFPMKTGVPNEVSQEDSFTTGSI--PEHVERMTNVGGDSEQAIFESDDSKEI 108
RDATFFE FPMK + SQ SI PE E + + + E DDS
Sbjct: 508 RDATFFESFFPMK-NTHSSSSQSSEIIPSSITPPEQTEH-------THEHVTEEDDS--- 556
Query: 107 VEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P +A
Sbjct: 557 AAPRRSKRQRTAKSFGDDFTVYLVDDTPKLISEA 590
>ABA99473.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 352 bits (903), Expect = e-108
Identities = 183/337 (54%), Positives = 230/337 (68%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+TFIDDA+R+CYV+LL++KDE
Sbjct: 436 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 495
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE+T PYSP+SNGIA
Sbjct: 496 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIA 555
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 556 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 615
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 616 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 675
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDA FFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 676 RDAIFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 726
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 727 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 758
>AAG03096.2 putative polyprotein [Oryza sativa Japonica Group] AAW56890.1
putative polyprotein [Oryza sativa Japonica Group]
Length = 1274
Score = 352 bits (902), Expect = e-108
Identities = 182/337 (54%), Positives = 230/337 (68%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+TFIDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSD GGE+ SN F FC+ HGI+HE+T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDHGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFL+VKS++S + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLVVKSEVSDMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDA FFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDAIFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>AAK50117.1 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1198
Score = 350 bits (899), Expect = e-108
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 408 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 467
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 468 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 527
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 528 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 587
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 588 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 647
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 648 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 698
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 699 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 730
>ABF98465.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1210
Score = 350 bits (899), Expect = e-108
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 408 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 467
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 468 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 527
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 528 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 587
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 588 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 647
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 648 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 698
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 699 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 730
>AAK71544.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 352 bits (902), Expect = e-108
Identities = 184/334 (55%), Positives = 228/334 (68%), Gaps = 3/334 (0%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMKTGVPNEVSQEDSFTTGSI--PEHVERMTNVGGDSEQAIFESDDSKEI 108
RDATFFE FPMK N +Q SI PE E + + + E D S+
Sbjct: 715 RDATFFESFFPMK-DTHNGSNQPSEIIPSSITPPEQTEH-------THELVSEEDVSE-- 764
Query: 107 VEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 765 -APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>ABF98853.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 352 bits (902), Expect = e-108
Identities = 184/334 (55%), Positives = 228/334 (68%), Gaps = 3/334 (0%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMKTGVPNEVSQEDSFTTGSI--PEHVERMTNVGGDSEQAIFESDDSKEI 108
RDATFFE FPMK N +Q SI PE E + + + E D S+
Sbjct: 715 RDATFFESFFPMK-DTHNGSNQPSEIIPSSITPPEQTEH-------THELVSEEDVSE-- 764
Query: 107 VEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 765 -APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>CAD40198.2 OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 351 bits (900), Expect = e-108
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPSEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>AAX92828.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] AAX95834.1 retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] ABA93156.1 retrotransposon protein, putative,
Ty1-copia subclass [Oryza sativa Japonica Group]
Length = 1277
Score = 350 bits (899), Expect = e-108
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLASLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRK SL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKSSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ G+ V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPGMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTMYLVDDTPKSISEA 797
>AAR01682.1 putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 350 bits (899), Expect = e-107
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>AAR01716.1 putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 350 bits (899), Expect = e-107
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>AAK84454.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 350 bits (899), Expect = e-107
Identities = 183/337 (54%), Positives = 229/337 (67%), Gaps = 6/337 (1%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP RNL L+L+H+D+CE NGV T+ K YF+T IDDA+R+CYV+LL++KDE
Sbjct: 475 PRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEA 534
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E E Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 535 LDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 594
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 595 ERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 654
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 655 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMES 714
Query: 281 RDATFFEDVFPMK-----TGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDS 117
RDATFFE FPMK + P+E+ S T EH + SE+ + E+
Sbjct: 715 RDATFFESFFPMKDTHSGSNQPSEII-PSSITPPEQTEHTHELV-----SEEDVSEA--- 765
Query: 116 KEIVEPRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR RT+ FG +F Y V+D P + +A
Sbjct: 766 -----PRRSKRQRTAKSFGDDFTVYLVDDTPKSISEA 797
>ABA93525.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1235
Score = 349 bits (896), Expect = e-107
Identities = 179/332 (53%), Positives = 227/332 (68%), Gaps = 1/332 (0%)
Frame = -2
Query: 998 PRKPFHYVN-RNLKFLDLVHTDICEFNGVATRDQKHYFITFIDDASRYCYVFLLRSKDEV 822
PRKP V RNL L+L+H+D+CE NGV T+ K YF+TFIDDA+R+CYV+LL++KDE
Sbjct: 408 PRKPHKAVEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEA 467
Query: 821 LDKFKIYKKEAETQTR*VLKRLRSDRGGEYTSNLFLEFCQLHGIVHEVTAPYSPQSNGIA 642
LD FKIYK E + Q +KRLRSDRGGE+ SN F FC+ HGI+HE T PYSP+SNGIA
Sbjct: 468 LDYFKIYKAEVKNQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIA 527
Query: 641 ERKN*TLIDMVNTLLQTSRLPNFMWGEALNTACHILNRVPHKHS*SSPFELWRGRKPSLK 462
ERKN TL D+VN +L T+ LP WGEAL T+ H+LNRVP+++ +P+E+W GRKPSL
Sbjct: 528 ERKNRTLTDLVNAMLDTTGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLS 587
Query: 461 YLRVWGCLAKVLVPEHKRKKLGPKTVDAIFLGYVETSYAYRFLIVKSDISGIEVNTIVEL 282
YLR WGCLAKV VP K++KLGPKTVD +FLGY S AYRFLIVKS++ + V TI+E
Sbjct: 588 YLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLIVKSEVPDMHVGTIMES 647
Query: 281 RDATFFEDVFPMKTGVPNEVSQEDSFTTGSIPEHVERMTNVGGDSEQAIFESDDSKEIVE 102
RDATFFE FPMK + + P + T+ + + E D S+
Sbjct: 648 RDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTKHTH------ELVSEEDVSE---A 698
Query: 101 PRRSKRPRTSNDFGSEFLTYNVEDDPVTFKQA 6
PRRSKR +T+ FG +F Y V+D P + +A
Sbjct: 699 PRRSKRQKTAKSFGDDFTVYLVDDTPKSISEA 730