BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00018015
         (709 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   346   e-108
ONM13151.1 nuclear RNA polymerase D2/E2 [Zea mays]                    332   e-107
ACP41916.1 RNA polymerase IV, partial [Heliosperma veselskyi sub...   326   e-107
ACP41915.1 RNA polymerase IV, partial [Heliosperma pusillum]          326   e-107
ACP41914.1 RNA polymerase IV, partial [Heliosperma macranthum]        326   e-107
ACQ99759.1 RNA polymerase IV, partial [Heliosperma macranthum]        326   e-107
AQK46529.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   331   e-107
ONM13156.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13159.1 nu...   332   e-107
ACQ99760.1 RNA polymerase IV, partial [Heliosperma macranthum]        325   e-107
AQK46526.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   331   e-106
ONM13139.1 nuclear RNA polymerase D2/E2 [Zea mays]                    332   e-106
ACQ99761.1 RNA polymerase IV, partial [Heliosperma pusillum]          322   e-106
AQK46533.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea ...   331   e-106
XP_012703111.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   340   e-105
XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   339   e-105
ACQ99762.1 RNA polymerase IV, partial [Heliosperma veselskyi sub...   322   e-105
XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   339   e-105
XP_009413518.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   338   e-105
XP_010667540.1 PREDICTED: DNA-directed RNA polymerases IV and V ...   337   e-104
ONM13140.1 nuclear RNA polymerase D2/E2 [Zea mays]                    332   e-104

>XP_008784482.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score =  346 bits (887), Expect = e-108
 Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLEESF-NFETLLEEAI 177
            R +LIHP VEIKRD+ Q+EVRIFSD+GRILRPLLIVENL K  KL+    +F+ L++E I
Sbjct: 609  RARLIHPQVEIKRDKHQREVRIFSDAGRILRPLLIVENLKKTSKLKGGVCSFQYLMDEGI 668

Query: 178  VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
            +E IG+EEEEDC TAW  R +F   +G     YSHCELD+SFLLG SC +IPFANHNFAR
Sbjct: 669  IELIGVEEEEDCHTAWGIRHLFMGDEGGPAPKYSHCELDVSFLLGLSCGIIPFANHNFAR 728

Query: 355  RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYSL----- 519
            RVLYQ+EKHSQQA+G+STTN  IRVDTLSHQ+YYPQKPLFRTV+ADCLGR+ YSL     
Sbjct: 729  RVLYQAEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRADYSLRRKDS 788

Query: 520  -PKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
             P+PE+FNGQ AIVAVNVH GYNQEDSLVMN+ASLERGMFRTEH++SYK++V+NKEL + 
Sbjct: 789  MPRPEYFNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKR 848

Query: 697  KRMK 708
             +++
Sbjct: 849  FKLR 852


>ONM13151.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 659

 Score =  332 bits (851), Expect = e-107
 Identities = 163/244 (66%), Positives = 202/244 (82%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           R  LI P VEIKRD+   EVR+F+D+GRILRPLL+VENL+KI+K +  SF+F  L+++ I
Sbjct: 80  RSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEI 139

Query: 178 VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
           +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SFLLG SC +IPFANHNFARR
Sbjct: 140 IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFLLGLSCGIIPFANHNFARR 198

Query: 358 VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------- 516
           VLYQSEKHSQQA+GYSTTN  IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS Y+       
Sbjct: 199 VLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKND 258

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
             +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 259 FARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 318

Query: 697 KRMK 708
            ++K
Sbjct: 319 LKLK 322


>ACP41916.1 RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
          Length = 475

 Score =  326 bits (835), Expect = e-107
 Identities = 163/242 (67%), Positives = 197/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR      VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + F+F+TLL++ I
Sbjct: 60  RRNQFLNQVEIKQDVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDCRTAW+ + +F   KGK    Y+HCELDLSFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY+TTN  IR+DTLSHQMYYPQ+PLFR+V+AD LG++ +       
Sbjct: 180 RVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQI 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AI+AVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VDNK+ LE 
Sbjct: 240 LPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEK 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>ACP41915.1 RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 475

 Score =  326 bits (835), Expect = e-107
 Identities = 163/242 (67%), Positives = 197/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR      VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + F+F+TLL++ I
Sbjct: 60  RRNQFLNQVEIKQDVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDCRTAW+ + +F   KGK    Y+HCELDLSFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCRTAWEIKYLFTGDKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY+TTN  IR+DTLSHQMYYPQ+PLFR+V+AD LG++ +       
Sbjct: 180 RVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQI 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AI+AVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VDNK+ LE 
Sbjct: 240 LPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEK 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>ACP41914.1 RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 475

 Score =  326 bits (835), Expect = e-107
 Identities = 163/242 (67%), Positives = 197/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR      VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + F+F+TLL++ I
Sbjct: 60  RRNQFLNQVEIKQDIQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDCRTAW+ + +F   KGK    Y+HCELD+SFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY+TTN  IR+DTLSHQMYYPQ+PLFR+V+AD LG++ +       
Sbjct: 180 RVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQI 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AIVAVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VDNK+ LE 
Sbjct: 240 LPKAEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEK 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>ACQ99759.1 RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  326 bits (835), Expect = e-107
 Identities = 163/242 (67%), Positives = 197/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR      VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + F+F+TLL++ I
Sbjct: 60  RRNQFLNQVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDC TAW+ + +F   KGK    Y+HCELD+SFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY++TN  IR+DTLSHQMYYPQ+PLFR+V+AD LG+S Y+      
Sbjct: 180 RVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKSDYTLGRNQR 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AIVAVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VDNK+ LE 
Sbjct: 240 LPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEK 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>AQK46529.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 659

 Score =  331 bits (849), Expect = e-107
 Identities = 163/244 (66%), Positives = 204/244 (83%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           R  LI P VEIKRD+  KEVR+FSD+GRILRPLL+VENL+KI+K +  SF+F+ L+++ I
Sbjct: 80  RSSLIDPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEI 139

Query: 178 VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
           +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SF+LG SC +IPFANHNFARR
Sbjct: 140 IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFILGLSCGIIPFANHNFARR 198

Query: 358 VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRS-------KYS 516
           VLYQSEKHSQQA+GYST+N +IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS       K  
Sbjct: 199 VLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDD 258

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
             +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 259 FTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 318

Query: 697 KRMK 708
            ++K
Sbjct: 319 LKLK 322


>ONM13156.1 nuclear RNA polymerase D2/E2 [Zea mays] ONM13159.1 nuclear RNA
           polymerase D2/E2 [Zea mays]
          Length = 693

 Score =  332 bits (851), Expect = e-107
 Identities = 163/244 (66%), Positives = 202/244 (82%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           R  LI P VEIKRD+   EVR+F+D+GRILRPLL+VENL+KI+K +  SF+F  L+++ I
Sbjct: 114 RSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEI 173

Query: 178 VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
           +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SFLLG SC +IPFANHNFARR
Sbjct: 174 IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFLLGLSCGIIPFANHNFARR 232

Query: 358 VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------- 516
           VLYQSEKHSQQA+GYSTTN  IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS Y+       
Sbjct: 233 VLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKND 292

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
             +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 293 FARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 352

Query: 697 KRMK 708
            ++K
Sbjct: 353 LKLK 356


>ACQ99760.1 RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  325 bits (834), Expect = e-107
 Identities = 162/242 (66%), Positives = 197/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR      VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + F+F+TLL++ I
Sbjct: 60  RRNQFLNQVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDC TAW+ + +F   KGK    Y+HCELD+SFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY++TN  IR+DTLSHQMYYP++PLFR+V+AD LG+S Y+      
Sbjct: 180 RVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPZRPLFRSVIADALGKSDYTLGRNQR 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AIVAVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VDNK+ LE 
Sbjct: 240 LPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEK 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>AQK46526.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 693

 Score =  331 bits (849), Expect = e-106
 Identities = 163/244 (66%), Positives = 204/244 (83%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           R  LI P VEIKRD+  KEVR+FSD+GRILRPLL+VENL+KI+K +  SF+F+ L+++ I
Sbjct: 114 RSSLIDPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEI 173

Query: 178 VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
           +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SF+LG SC +IPFANHNFARR
Sbjct: 174 IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFILGLSCGIIPFANHNFARR 232

Query: 358 VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRS-------KYS 516
           VLYQSEKHSQQA+GYST+N +IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS       K  
Sbjct: 233 VLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDD 292

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
             +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 293 FTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 352

Query: 697 KRMK 708
            ++K
Sbjct: 353 LKLK 356


>ONM13139.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 773

 Score =  332 bits (851), Expect = e-106
 Identities = 163/244 (66%), Positives = 202/244 (82%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
            R  LI P VEIKRD+   EVR+F+D+GRILRPLL+VENL+KI+K +  SF+F  L+++ I
Sbjct: 430  RSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEI 489

Query: 178  VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SFLLG SC +IPFANHNFARR
Sbjct: 490  IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFLLGLSCGIIPFANHNFARR 548

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------- 516
            VLYQSEKHSQQA+GYSTTN  IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS Y+       
Sbjct: 549  VLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKND 608

Query: 517  LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
              +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 609  FARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 668

Query: 697  KRMK 708
             ++K
Sbjct: 669  LKLK 672


>ACQ99761.1 RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 443

 Score =  322 bits (825), Expect = e-106
 Identities = 160/242 (66%), Positives = 198/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR  +   VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + ++F+TLL++ I
Sbjct: 28  RRNQLLNQVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDYSFQTLLDKGI 87

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDC TAW+ + +F   KGK    Y+HCELD+SFLLG SC +IPFANH+ AR
Sbjct: 88  LELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHAR 147

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY++TN  IR+DTLSHQMYYPQ+PLFR+V+AD LG+  ++      
Sbjct: 148 RVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKPDHTLGRNQR 207

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AIVAVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VD+K+ LEN
Sbjct: 208 LPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDDKDSLEN 267

Query: 697 KR 702
           +R
Sbjct: 268 RR 269


>AQK46533.1 DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 753

 Score =  331 bits (849), Expect = e-106
 Identities = 163/244 (66%), Positives = 204/244 (83%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
            R  LI P VEIKRD+  KEVR+FSD+GRILRPLL+VENL+KI+K +  SF+F+ L+++ I
Sbjct: 430  RSSLIDPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEI 489

Query: 178  VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SF+LG SC +IPFANHNFARR
Sbjct: 490  IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFILGLSCGIIPFANHNFARR 548

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRS-------KYS 516
            VLYQSEKHSQQA+GYST+N +IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS       K  
Sbjct: 549  VLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDD 608

Query: 517  LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
              +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 609  FTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 668

Query: 697  KRMK 708
             ++K
Sbjct: 669  LKLK 672


>XP_012703111.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Setaria italica] KQK99160.1 hypothetical protein
            SETIT_009201mg [Setaria italica]
          Length = 1234

 Score =  340 bits (872), Expect = e-105
 Identities = 165/243 (67%), Positives = 207/243 (85%), Gaps = 7/243 (2%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
            R  LIHP VEIKRD+ QKEVR+FS++GRILRPLL+VENL+KI+K +  S++F+ L+++ I
Sbjct: 656  RSSLIHPQVEIKRDKHQKEVRVFSEAGRILRPLLVVENLNKIRKPKGRSYSFQELIQQEI 715

Query: 178  VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            +EFIG+EEEED + AW  R +F S+G+  ++Y+HCELD SFLLG SC +IPFANHNFARR
Sbjct: 716  IEFIGVEEEEDIQCAWGIRHLFGSEGE-ISSYTHCELDPSFLLGLSCGIIPFANHNFARR 774

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYSL------ 519
            VLYQSEKHSQQA+GYSTTN  IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS Y++      
Sbjct: 775  VLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDF 834

Query: 520  PKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLENK 699
             +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK++ +  
Sbjct: 835  ARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDVTKRL 894

Query: 700  RMK 708
            +MK
Sbjct: 895  KMK 897


>XP_010937061.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Elaeis
            guineensis]
          Length = 1189

 Score =  339 bits (870), Expect = e-105
 Identities = 167/244 (68%), Positives = 203/244 (83%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLEESF-NFETLLEEAI 177
            R  LIH  VEIKRD+ Q+EVRIFSD+GRILRPLLIVENL KI KL+    +F+ L+++ I
Sbjct: 609  RATLIHSQVEIKRDKHQREVRIFSDAGRILRPLLIVENLEKISKLKGGVCSFQHLMDQGI 668

Query: 178  VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
            +E IG+EEEEDC TAW  R +F   +G+    Y+HCELD+SFLLG SC +IPFANHNFAR
Sbjct: 669  IELIGVEEEEDCPTAWGIRHLFMGDEGQPAPKYTHCELDVSFLLGLSCGIIPFANHNFAR 728

Query: 355  RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRS------KYS 516
            RVLYQ+EKHSQQA+G+STTN  IRVDTLSHQ+YYPQKPLFRTV+ADCLGR+      K S
Sbjct: 729  RVLYQAEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRAVHSLGRKDS 788

Query: 517  LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
            +P+PE+FNGQ AIVAVNVH GYNQEDSLVMN+ASLERGMFRTEH++SYK++V+NKEL + 
Sbjct: 789  MPRPEYFNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKR 848

Query: 697  KRMK 708
             +++
Sbjct: 849  FKLR 852


>ACQ99762.1 RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
          Length = 474

 Score =  322 bits (825), Expect = e-105
 Identities = 160/242 (66%), Positives = 198/242 (81%), Gaps = 8/242 (3%)
 Frame = +1

Query: 1   RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
           RR  +   VEIK+D Q  EVRIF D+GRILRPLL+VENL KIK L+ + ++F+TLL++ I
Sbjct: 60  RRNQLLNQVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDYSFQTLLDKGI 119

Query: 178 VEFIGIEEEEDCRTAWDARKIFES-KGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
           +E IG+EEEEDC TAW+ + +F   KGK    Y+HCELD+SFLLG SC +IPFANH+ AR
Sbjct: 120 LELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHAR 179

Query: 355 RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------ 516
           RVLYQSEKHS QA+GY++TN  IR+DTLSHQMYYPQ+PLFR+V+AD LG+  ++      
Sbjct: 180 RVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKPDHTLGRNQR 239

Query: 517 LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
           LPK EFFNGQ AIVAVNVHLGYNQEDS+VMN+ASLERGMFRTEH +SYK++VD+K+ LEN
Sbjct: 240 LPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDDKDSLEN 299

Query: 697 KR 702
           +R
Sbjct: 300 RR 301


>XP_010275247.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Nelumbo nucifera]
          Length = 1201

 Score =  339 bits (870), Expect = e-105
 Identities = 164/241 (68%), Positives = 201/241 (83%), Gaps = 7/241 (2%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLEESFNFETLLEEAIV 180
            R K I   VEIKRD+QQ EVRIFSD+GRILRPLL+VENL KIK+ +  ++F++LL++ ++
Sbjct: 619  RSKEIPHQVEIKRDQQQGEVRIFSDAGRILRPLLVVENLRKIKEFKGGYSFQSLLDKGVL 678

Query: 181  EFIGIEEEEDCRTAWDARKIF-ESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            E +G+EEEEDC+TAW  + +    K +   NY+HCELDLS+L+G SCSLIPFANH+ ARR
Sbjct: 679  ELVGVEEEEDCQTAWGVKYLLMRGKDEPPVNYTHCELDLSYLMGLSCSLIPFANHDHARR 738

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------L 519
            VLYQSEKHSQQA+G+STTN  IRVDTLSHQ+YYPQ+PLFRT+V+DCLGR +Y       L
Sbjct: 739  VLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMVSDCLGRPEYPQGHNGVL 798

Query: 520  PKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLENK 699
            P+PE+FNGQ AIVAVNVHLGYNQEDSLVMN+ASLERGMFRTEH +SYK+DVDN EL +N 
Sbjct: 799  PRPEYFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHIRSYKADVDNSELFDNN 858

Query: 700  R 702
            +
Sbjct: 859  K 859


>XP_009413518.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis] XP_009413519.1 PREDICTED:
            DNA-directed RNA polymerases IV and V subunit 2-like
            [Musa acuminata subsp. malaccensis]
          Length = 1198

 Score =  338 bits (867), Expect = e-105
 Identities = 168/244 (68%), Positives = 202/244 (82%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLEESF-NFETLLEEAI 177
            R KLIHP VEIKRD+ QKEVRIF+D+GRILRPLLIVENL KI+ L+    +F++L+++ I
Sbjct: 618  RAKLIHPQVEIKRDKHQKEVRIFTDAGRILRPLLIVENLKKIRNLKGGVCSFQSLMDQEI 677

Query: 178  VEFIGIEEEEDCRTAWDARKIFE-SKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFAR 354
            +E IG+EEEEDC+TAW  + +   ++G S  NYSHCELD SFLLG SC +IPFA+HNFAR
Sbjct: 678  IELIGVEEEEDCQTAWGIKYLLAVNEGISAPNYSHCELDPSFLLGLSCGIIPFASHNFAR 737

Query: 355  RVLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYSL----- 519
            RVLYQSEKHSQQA+G+STTN  IRVDTLSH +YYPQ PLFRTV+ADCL R+ YSL     
Sbjct: 738  RVLYQSEKHSQQAIGFSTTNPSIRVDTLSHHLYYPQTPLFRTVIADCLVRADYSLGRKDS 797

Query: 520  -PKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
              +PE+FNGQ AIVAVNVH GYNQEDSLVMN+ SLERGMFRTEH++SYK+DVDNKEL + 
Sbjct: 798  MTRPEYFNGQNAIVAVNVHQGYNQEDSLVMNRTSLERGMFRTEHFRSYKADVDNKELTKR 857

Query: 697  KRMK 708
             ++K
Sbjct: 858  IKLK 861


>XP_010667540.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Beta
            vulgaris subsp. vulgaris] XP_010667543.1 PREDICTED:
            DNA-directed RNA polymerases IV and V subunit 2 [Beta
            vulgaris subsp. vulgaris] KMT18122.1 hypothetical protein
            BVRB_2g031510 [Beta vulgaris subsp. vulgaris]
          Length = 1209

 Score =  337 bits (864), Expect = e-104
 Identities = 166/241 (68%), Positives = 196/241 (81%), Gaps = 7/241 (2%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
            R++ I   VEIKRD Q  EVRIF D+GRILRPLL+VENL K K L+ + F+FETL+++ I
Sbjct: 629  RKRHISREVEIKRDAQNAEVRIFCDAGRILRPLLVVENLKKTKLLKGDEFSFETLMDKGI 688

Query: 178  VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            +E IG+EEEEDCRTAW  + +FE KGK    Y+HCELD+SFLLG SC +IPFANH+ ARR
Sbjct: 689  IELIGVEEEEDCRTAWGIKYLFEDKGKDAVKYTHCELDMSFLLGVSCGIIPFANHDHARR 748

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------L 519
            VLYQSEKHS QA+GYS+TN  IRVDTLSHQMYYPQ+PLFR+V++DCLG+  Y       L
Sbjct: 749  VLYQSEKHSGQAIGYSSTNPNIRVDTLSHQMYYPQRPLFRSVISDCLGKPGYPLGRSQIL 808

Query: 520  PKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLENK 699
            PK EFFNGQ  IVAVNVHLGYNQEDSLVMN+ASLERGMFRTEH +SYK++VDNKE  E +
Sbjct: 809  PKAEFFNGQNGIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHTRSYKAEVDNKESSEKR 868

Query: 700  R 702
            R
Sbjct: 869  R 869


>ONM13140.1 nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 935

 Score =  332 bits (851), Expect = e-104
 Identities = 163/244 (66%), Positives = 202/244 (82%), Gaps = 8/244 (3%)
 Frame = +1

Query: 1    RRKLIHPLVEIKRDEQQKEVRIFSDSGRILRPLLIVENLSKIKKLE-ESFNFETLLEEAI 177
            R  LI P VEIKRD+   EVR+F+D+GRILRPLL+VENL+KI+K +  SF+F  L+++ I
Sbjct: 599  RSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEI 658

Query: 178  VEFIGIEEEEDCRTAWDARKIFESKGKSTANYSHCELDLSFLLGFSCSLIPFANHNFARR 357
            +EFIG+EEEED + AW  R +FES+G + ++Y+HCELD SFLLG SC +IPFANHNFARR
Sbjct: 659  IEFIGVEEEEDIQCAWGIRHLFESEG-AISSYTHCELDPSFLLGLSCGIIPFANHNFARR 717

Query: 358  VLYQSEKHSQQALGYSTTNRQIRVDTLSHQMYYPQKPLFRTVVADCLGRSKYS------- 516
            VLYQSEKHSQQA+GYSTTN  IRVDTLSHQ+YYPQ+PLF+TV+ADCLGRS Y+       
Sbjct: 718  VLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKND 777

Query: 517  LPKPEFFNGQVAIVAVNVHLGYNQEDSLVMNQASLERGMFRTEHYKSYKSDVDNKELLEN 696
              +PE+FNGQ AIVAVNVH G+NQEDSLVMN+ASLERGMFRTEH +SYK+DV+NK+  + 
Sbjct: 778  FARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKR 837

Query: 697  KRMK 708
             ++K
Sbjct: 838  LKLK 841