BLASTX nr result

ID: Alisma22_contig00011948 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00011948
         (1986 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_020113503.1 RNA pseudouridine synthase 2, chloroplastic isofo...   484   e-163
XP_009382727.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   482   e-162
XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   480   e-161
XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   476   e-160
XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   474   e-159
XP_008445320.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
XP_008445318.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsula...   471   e-158
XP_018731676.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   472   e-158
KCW70505.1 hypothetical protein EUGRSUZ_F03712 [Eucalyptus grandis]   472   e-158
XP_011649466.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   469   e-157
XP_011649465.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   469   e-157
XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   468   e-157
KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]       468   e-157
XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   466   e-156
XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   466   e-156
XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   466   e-156

>XP_020113503.1 RNA pseudouridine synthase 2, chloroplastic isoform X1 [Ananas
            comosus] OAY68405.1 RNA pseudouridine synthase 2,
            chloroplastic [Ananas comosus]
          Length = 430

 Score =  484 bits (1245), Expect = e-163
 Identities = 255/404 (63%), Positives = 307/404 (75%), Gaps = 11/404 (2%)
 Frame = +1

Query: 205  LRFACAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VS 378
            LR  C++++ +       D +   R  +++ G RLEE +E G GRSRLDAW++SR+  VS
Sbjct: 27   LRAMCSSSALD------PDPNPSPRLRSSHAGARLEEAVEVGSGRSRLDAWLASRIRGVS 80

Query: 379  RARVQSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSH 558
            RAR+QSSIR GLV VNGRTV+KVS ++K GD + CTVSEL PLRAE EDIPLDIVYED H
Sbjct: 81   RARIQSSIRSGLVAVNGRTVDKVSHMVKGGDMISCTVSELQPLRAEAEDIPLDIVYEDEH 140

Query: 559  VIVVNKPAHMVVHPAPGNRNGTLVNAILNHCQLPV------ETHSTIFXXXXXXXXXXXX 720
            V+VVNKPAHMVVHPAPGN NGTLVNAIL+HC+LP+       T S               
Sbjct: 141  VLVVNKPAHMVVHPAPGNANGTLVNAILHHCRLPMVTCVNDSTMSESDESLDSSDEEIDV 200

Query: 721  XXXXAFSYPESS---SAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRV 891
                 FS  E S     A VRPGIVHRLDKGTSGLLVVAK+ HSHAHL+EQFK HTI+RV
Sbjct: 201  YHADQFSTEELSLEVPEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKQHTINRV 260

Query: 892  YVSLTAGVPSPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGAC 1071
            Y+SLT GVP+P SARI+IPIARDPNNR+RMVA+SGS N+++AR AASR+ V+EVLAGG  
Sbjct: 261  YISLTTGVPNPYSARIEIPIARDPNNRVRMVAISGS-NHRHARYAASRYEVIEVLAGGGS 319

Query: 1072 ALVEWRLETGRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILS 1251
            ALV+WRLETGRTHQIRAHAKYL +PLLGDEVYGGT ++ LSLL+ + P S HG+++ ++S
Sbjct: 320  ALVKWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLKPRTPSSHHGHLSHMIS 379

Query: 1252 NLQRPSLHALSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRIS 1383
             L RP LHALSLGF+HP TGE ++FSCPPP DFS+V+  L  I+
Sbjct: 380  KLDRPCLHALSLGFEHPQTGEFLRFSCPPPDDFSEVVDQLRGIN 423


>XP_009382727.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Musa acuminata subsp. malaccensis] XP_009382728.1
            PREDICTED: RNA pseudouridine synthase 2, chloroplastic
            isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 440

 Score =  482 bits (1241), Expect = e-162
 Identities = 247/376 (65%), Positives = 290/376 (77%), Gaps = 11/376 (2%)
 Frame = +1

Query: 289  NYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKVSQVIK 462
            N+ G+RLEE +E G  ++R+D+WISSR+  VSRAR+QSSIR GLV VNGRTV KVS +IK
Sbjct: 59   NHAGVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIK 118

Query: 463  AGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTLVNAIL 642
             GD V C +S+LLPL+AEPED+PLDIVYED HVIVVNKPAHMVVHPAPGN NGTLVNAIL
Sbjct: 119  GGDMVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAIL 178

Query: 643  NHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSS---------AASVRPGIVHRL 795
            +HC+LP+   +                        + SS          A VRPGIVHRL
Sbjct: 179  HHCRLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRL 238

Query: 796  DKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRI 975
            DKGTSGLLVVAK+ HSHAHL+EQFK HTIHRVY+SLT+GVP+PS  RI+IPIARD NNRI
Sbjct: 239  DKGTSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRI 298

Query: 976  RMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLG 1155
            RMVAVSG  N+++AR AASR++V+E   GG  ALV+WRLETGRTHQIRAHAKYL IPLLG
Sbjct: 299  RMVAVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLG 358

Query: 1156 DEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCP 1335
            DEVYGGT ++ LSLLR + PP+ HG+++ I+S LQRP LHA S+GFKHP TGE ++FSCP
Sbjct: 359  DEVYGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCP 418

Query: 1336 PPSDFSKVLSLLHRIS 1383
            PP DFSKVL  L  IS
Sbjct: 419  PPDDFSKVLDQLRSIS 434


>XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] CBI18920.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 433

 Score =  480 bits (1235), Expect = e-161
 Identities = 243/378 (64%), Positives = 290/378 (76%), Gaps = 7/378 (1%)
 Frame = +1

Query: 280  RNTNYGGIRLEETM----EGPGRSRLDAWISSRL-PVSRARVQSSIREGLVFVNGRTVEK 444
            R TNY G+RLEET+       G+ RLD+WISSR+  +SRARVQSSIR GLV VN R V+K
Sbjct: 54   RRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDK 113

Query: 445  VSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGT 624
            VS VI+AGDKV CT+SEL PLRAEPEDIPLDIVYED HV+VVNKPAHMVVHPAPGN +GT
Sbjct: 114  VSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGT 173

Query: 625  LVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAA--SVRPGIVHRLD 798
            LVN IL+HC LP    +                   +F+  ++      ++RPGIVHRLD
Sbjct: 174  LVNGILHHCSLP----TVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLD 229

Query: 799  KGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIR 978
            KGTSGLLVVAK+ HSHAHLSEQFK H+IHRVY+SLT+GVP+P S R++IP+ RDPNNRIR
Sbjct: 230  KGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIR 289

Query: 979  MVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGD 1158
            M AV G  N+  AR AASR++V+E+LA G  ALVEWRLETGRTHQIRAHAKYL IPLLGD
Sbjct: 290  MTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGD 349

Query: 1159 EVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPP 1338
            EVYGGT N+ LSLLR +IP S HG + +++S L RP LHA++LGF HP TG++V FSC P
Sbjct: 350  EVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQP 409

Query: 1339 PSDFSKVLSLLHRISRDK 1392
            P DF+++LS L +IS +K
Sbjct: 410  PEDFAEILSWLRKISTEK 427


>XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus
            jujuba]
          Length = 442

 Score =  476 bits (1224), Expect = e-160
 Identities = 243/392 (61%), Positives = 294/392 (75%), Gaps = 2/392 (0%)
 Frame = +1

Query: 223  ATSTELVADEHKDKSWMERRNTNYGGIRLEETMEGPGRS-RLDAWISSRLP-VSRARVQS 396
            +TST +   +  D++    RN NY G+RLEET+    R  RLD+WISSR+  +SRARVQS
Sbjct: 51   STSTGVSISDGNDEALAGHRN-NYSGVRLEETVAVDSRKLRLDSWISSRVSGISRARVQS 109

Query: 397  SIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNK 576
            SIR GLV VNGR V+KVS  +KAGD+V CT+SEL PLRAEPE+IPLDIVYED HV+VVNK
Sbjct: 110  SIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPLDIVYEDDHVLVVNK 169

Query: 577  PAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESS 756
            PAHMVVHPAPGN  GTLVN IL+HC LP    S                   +     S+
Sbjct: 170  PAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDDGLGYFSVDQSSST 229

Query: 757  SAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSAR 936
              ASVRPGIVHRLDKGTSGLLVVAKN  SHAHLS+QFK HTIHRVY+SLT+GVPSP + R
Sbjct: 230  CQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHTIHRVYISLTSGVPSPLAGR 289

Query: 937  IDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQI 1116
            +DIPI RD NNRIRM A+ G + +K  R AASR++V+EVLAGG  ALVEWRLETGRTHQI
Sbjct: 290  VDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLAGGGSALVEWRLETGRTHQI 349

Query: 1117 RAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFK 1296
            RAHAK+L IPLLGDE+YGGT ++ LSLL  + P S HG +++++S  +RP LHA++L FK
Sbjct: 350  RAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLSQLVSEFERPCLHAMALRFK 409

Query: 1297 HPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            HP TG+++ FSCPPPSDF+++L+ L + S  K
Sbjct: 410  HPHTGKNIHFSCPPPSDFAEILNQLRKFSTAK 441


>XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Juglans regia]
          Length = 446

 Score =  474 bits (1221), Expect = e-159
 Identities = 245/408 (60%), Positives = 302/408 (74%), Gaps = 10/408 (2%)
 Frame = +1

Query: 199  ASLRFACAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP- 372
            +SLR    A+S+    +  +DK  +  R  N+GG++LE+T+    G+ RLD+WISSR+  
Sbjct: 36   SSLRICFVASSSSGSTNSDEDKEDLAGRRANFGGVQLEDTVSLNSGKLRLDSWISSRIGG 95

Query: 373  VSRARVQSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYED 552
            +SRARVQSSIR GLV VNGR V+KVS  +K GDKV CT+SEL PLRA PEDIPLDIV+ED
Sbjct: 96   ISRARVQSSIRSGLVAVNGRVVDKVSHNVKTGDKVNCTISELQPLRAVPEDIPLDIVFED 155

Query: 553  SHVIVVNKPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXX 732
             HV+VVNKPAHMVVHPAPGN  GTLVN +L+HC  PV   S                   
Sbjct: 156  EHVLVVNKPAHMVVHPAPGNATGTLVNGVLHHCSPPVVAFSN--EEVLSDAEDISDDELS 213

Query: 733  AFSYPES--------SSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHR 888
            +FS  ++         S AS+RPGIVHRLDKGTSGLLVVAK+ HSHA+LSEQFK HTI R
Sbjct: 214  SFSAGQNPNDGLYSRRSGASIRPGIVHRLDKGTSGLLVVAKDEHSHANLSEQFKLHTIQR 273

Query: 889  VYVSLTAGVPSPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGA 1068
            +YVSLT+GVPSP + R+++PI RD NNRIRM A+ GS  ++ AR AASR++V+E+LAGG+
Sbjct: 274  LYVSLTSGVPSPMAGRVEVPIGRDLNNRIRMAAIPGSNISRQARHAASRYKVIEILAGGS 333

Query: 1069 CALVEWRLETGRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEIL 1248
             ALVEWRLETGRTHQIRAHAKYL IPLLGDEVYGGT ++ LSLLR + PPSRHG + +++
Sbjct: 334  SALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTPPSRHGQLLQLV 393

Query: 1249 SNLQRPSLHALSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            S L+RP LHAL+LGF HP T E+V F CPPP+DF+++L  L +I   K
Sbjct: 394  SRLERPCLHALALGFMHPHTMENVYFQCPPPADFAEILGQLRKIGTVK 441


>XP_008445320.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis melo]
          Length = 429

 Score =  472 bits (1214), Expect = e-158
 Identities = 243/398 (61%), Positives = 296/398 (74%), Gaps = 2/398 (0%)
 Frame = +1

Query: 205  LRFACAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VS 378
            LRF+   +S     DE+ +      R  NY G RLEET++  PG+ RLD+WISSR+  +S
Sbjct: 33   LRFSANFSSRCSDYDEYSEAQ--SERIANYAGTRLEETVDINPGKVRLDSWISSRINGIS 90

Query: 379  RARVQSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSH 558
            RARVQSSIR GLV VNGR ++KVS  +KAGD + CT+SEL PLRAEPEDI LDIVYED H
Sbjct: 91   RARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEH 150

Query: 559  VIVVNKPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAF 738
            V+VVNKPAHMVVHPAPGN  GTLVNAILNHC LP+ + ST                   F
Sbjct: 151  VLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVF 210

Query: 739  SYPESSSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVP 918
            S     S A +RPGIVHRLDKGTSGLLVVAK+ HSHAHLS QFK H+I RVY+SLT GVP
Sbjct: 211  S---RVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVP 267

Query: 919  SPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLET 1098
              ++ RI+IPI RDPNNRIRM A  G+ NN +A+ AASR+ V+E+LA G  +LVEWRLET
Sbjct: 268  PSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLET 327

Query: 1099 GRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHA 1278
            GRTHQIRAHAKY+ IPLLGDEVYGGT ++ +SLLRT+   + HG + +++S+L+RP LHA
Sbjct: 328  GRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHA 387

Query: 1279 LSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            L+LGF HP TG++++FSCPPP+DF+++LS L  I   K
Sbjct: 388  LTLGFVHPHTGKNIRFSCPPPTDFAEILSQLREIGTKK 425


>XP_008445318.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo] XP_008445319.1 PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo]
          Length = 431

 Score =  472 bits (1214), Expect = e-158
 Identities = 243/398 (61%), Positives = 296/398 (74%), Gaps = 2/398 (0%)
 Frame = +1

Query: 205  LRFACAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VS 378
            LRF+   +S     DE+ +      R  NY G RLEET++  PG+ RLD+WISSR+  +S
Sbjct: 33   LRFSANFSSRCSDYDEYSEAQ--SERIANYAGTRLEETVDINPGKVRLDSWISSRINGIS 90

Query: 379  RARVQSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSH 558
            RARVQSSIR GLV VNGR ++KVS  +KAGD + CT+SEL PLRAEPEDI LDIVYED H
Sbjct: 91   RARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEH 150

Query: 559  VIVVNKPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAF 738
            V+VVNKPAHMVVHPAPGN  GTLVNAILNHC LP+ + ST                   F
Sbjct: 151  VLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVSTSTGEHQSDSDVSDDEFSSIEVF 210

Query: 739  SYPESSSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVP 918
            S     S A +RPGIVHRLDKGTSGLLVVAK+ HSHAHLS QFK H+I RVY+SLT GVP
Sbjct: 211  S---RVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVP 267

Query: 919  SPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLET 1098
              ++ RI+IPI RDPNNRIRM A  G+ NN +A+ AASR+ V+E+LA G  +LVEWRLET
Sbjct: 268  PSTAGRIEIPICRDPNNRIRMTATHGTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLET 327

Query: 1099 GRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHA 1278
            GRTHQIRAHAKY+ IPLLGDEVYGGT ++ +SLLRT+   + HG + +++S+L+RP LHA
Sbjct: 328  GRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHA 387

Query: 1279 LSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            L+LGF HP TG++++FSCPPP+DF+++LS L  I   K
Sbjct: 388  LTLGFVHPHTGKNIRFSCPPPTDFAEILSQLREIGTKK 425


>XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  472 bits (1215), Expect = e-158
 Identities = 248/400 (62%), Positives = 302/400 (75%), Gaps = 8/400 (2%)
 Frame = +1

Query: 217  CAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARV 390
            C+ +ST   A +++      RR  N+ G+ LE+T+E    +SR+D+WISSR+P +SRARV
Sbjct: 41   CSFSSTGESASDYQSSEPQNRRG-NFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARV 99

Query: 391  QSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVV 570
            QSSI+ GLV VNGR ++KVS VI+AGDKV CT+ EL PLRAEPEDIPLDIVYED  V+VV
Sbjct: 100  QSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVV 159

Query: 571  NKPAHMVVHPAPGNRNGTLVNAILNHCQLPVE--THSTIFXXXXXXXXXXXXXXXXAFSY 744
            NKPAHMVVHPAPGN NGTLVN IL+HC LP+   T+S +                     
Sbjct: 160  NKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGS 219

Query: 745  PESSSA----ASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAG 912
             E  ++     SVRPGIVHRLDKGTSGLLVVAK+ HSHAHLSEQFK HTI+R+Y+SLT G
Sbjct: 220  MEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCG 279

Query: 913  VPSPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRL 1092
            VPS +S RI++PI RD +NRIRM AV    +++ AR AASR+RV+EVLAGG  ALVEWRL
Sbjct: 280  VPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRL 339

Query: 1093 ETGRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSL 1272
            ETGRTHQIRAHAKYL IPLLGDEVYGGT N+ LSLLRT+   S HG +++++S LQRP L
Sbjct: 340  ETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCL 399

Query: 1273 HALSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            HA +LGFKHP TGE+++FSCPPP+DF++VLS L  I  +K
Sbjct: 400  HAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  472 bits (1215), Expect = e-158
 Identities = 248/400 (62%), Positives = 302/400 (75%), Gaps = 8/400 (2%)
 Frame = +1

Query: 217  CAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARV 390
            C+ +ST   A +++      RR  N+ G+ LE+T+E    +SR+D+WISSR+P +SRARV
Sbjct: 41   CSFSSTGESASDYQSSEPQNRRG-NFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARV 99

Query: 391  QSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVV 570
            QSSI+ GLV VNGR ++KVS VI+AGDKV CT+ EL PLRAEPEDIPLDIVYED  V+VV
Sbjct: 100  QSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVV 159

Query: 571  NKPAHMVVHPAPGNRNGTLVNAILNHCQLPVE--THSTIFXXXXXXXXXXXXXXXXAFSY 744
            NKPAHMVVHPAPGN NGTLVN IL+HC LP+   T+S +                     
Sbjct: 160  NKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGS 219

Query: 745  PESSSA----ASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAG 912
             E  ++     SVRPGIVHRLDKGTSGLLVVAK+ HSHAHLSEQFK HTI+R+Y+SLT G
Sbjct: 220  MEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCG 279

Query: 913  VPSPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRL 1092
            VPS +S RI++PI RD +NRIRM AV    +++ AR AASR+RV+EVLAGG  ALVEWRL
Sbjct: 280  VPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRL 339

Query: 1093 ETGRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSL 1272
            ETGRTHQIRAHAKYL IPLLGDEVYGGT N+ LSLLRT+   S HG +++++S LQRP L
Sbjct: 340  ETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCL 399

Query: 1273 HALSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            HA +LGFKHP TGE+++FSCPPP+DF++VLS L  I  +K
Sbjct: 400  HAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsularis]
          Length = 432

 Score =  471 bits (1212), Expect = e-158
 Identities = 242/377 (64%), Positives = 289/377 (76%), Gaps = 3/377 (0%)
 Frame = +1

Query: 286  TNYGGIRLEETMEGP--GRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKVSQV 456
            T+Y G++LEET++    G+ RLD+WISSR+  +SRARVQSSI+ GLV VNGR V+KVS  
Sbjct: 61   TSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHG 120

Query: 457  IKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTLVNA 636
            ++AGDKV C +SEL PLRAEPEDIPLDIVYED HV+VVNKP HMVVHPAPGN  GTLVN 
Sbjct: 121  LRAGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNG 180

Query: 637  ILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAASVRPGIVHRLDKGTSGL 816
            IL+HC LP    S                    F Y E+++AA +RPGIVHRLDKGTSGL
Sbjct: 181  ILHHCSLPTVALSE----KELLSDTEDGSDDEGFPYGENAAAA-IRPGIVHRLDKGTSGL 235

Query: 817  LVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIRMVAVSG 996
            LVVAK+ HSHAHLSEQFK HTI RVY+SLT GVPSPS+ R+DIPI RD NNR+RMVAV G
Sbjct: 236  LVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDIPIGRDSNNRVRMVAVPG 295

Query: 997  SVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGDEVYGGT 1176
              +   AR AASR++V+EVLAGG  ALV+WRLETGRTHQIRAHAKY+ IPLLGDEVYGGT
Sbjct: 296  ISHPGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGT 355

Query: 1177 NNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPPPSDFSK 1356
             N+VLSLLR + PPS +  ++ ++S L+RP LHAL LGF+HP + E++ FSCPPP DF+ 
Sbjct: 356  KNMVLSLLRPRTPPSYNDQLSRLVSRLERPYLHALVLGFQHPQSSENMHFSCPPPPDFTG 415

Query: 1357 VLSLLHRISRDK*YLME 1407
            +LS L +I  +K  L E
Sbjct: 416  ILSQLRKIGVEKPILKE 432


>XP_018731676.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis]
          Length = 453

 Score =  472 bits (1214), Expect = e-158
 Identities = 245/378 (64%), Positives = 285/378 (75%), Gaps = 9/378 (2%)
 Frame = +1

Query: 286  TNYGGIRLEETMEG--PGRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKVSQV 456
            + Y G+RL ET++   PG+ RLDAWISSR+  VSRARVQSSIR GLV VNGR V+KVS  
Sbjct: 72   SGYAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHN 131

Query: 457  IKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTLVNA 636
            ++AGD V CT+SEL PLRAEPEDIP+DIVYED HV+VVNKPAHMVVHPAPGN +GTLVNA
Sbjct: 132  VRAGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNA 191

Query: 637  ILNHCQLP------VETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAASVRPGIVHRLD 798
            IL+HC LP       E  S                      +  S S  SVRPGIVHRLD
Sbjct: 192  ILHHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLD 251

Query: 799  KGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIR 978
            KGTSGLLVVAKN  SHAHLSEQFK HTI RVYVSLT GVPS +S RI++PI RD NNRIR
Sbjct: 252  KGTSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIR 311

Query: 979  MVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGD 1158
            M A+ G  N + AR AASR++V+EVLAGG+ ALVEWRLETGRTHQIRAHAKY+ IPLLGD
Sbjct: 312  MSAIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGD 371

Query: 1159 EVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPP 1338
            EVYGGT N++LSLL+ K+P  R   ++E++S L+RP LHA+SLGF HP TGE+V+FSC P
Sbjct: 372  EVYGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQP 431

Query: 1339 PSDFSKVLSLLHRISRDK 1392
            P DFS++L  L R+   K
Sbjct: 432  PEDFSEILCQLRRLGMKK 449


>XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  472 bits (1215), Expect = e-158
 Identities = 248/400 (62%), Positives = 302/400 (75%), Gaps = 8/400 (2%)
 Frame = +1

Query: 217  CAATSTELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARV 390
            C+ +ST   A +++      RR  N+ G+ LE+T+E    +SR+D+WISSR+P +SRARV
Sbjct: 41   CSFSSTGESASDYQSSEPQNRRG-NFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARV 99

Query: 391  QSSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVV 570
            QSSI+ GLV VNGR ++KVS VI+AGDKV CT+ EL PLRAEPEDIPLDIVYED  V+VV
Sbjct: 100  QSSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVV 159

Query: 571  NKPAHMVVHPAPGNRNGTLVNAILNHCQLPVE--THSTIFXXXXXXXXXXXXXXXXAFSY 744
            NKPAHMVVHPAPGN NGTLVN IL+HC LP+   T+S +                     
Sbjct: 160  NKPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGS 219

Query: 745  PESSSA----ASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAG 912
             E  ++     SVRPGIVHRLDKGTSGLLVVAK+ HSHAHLSEQFK HTI+R+Y+SLT G
Sbjct: 220  MEEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCG 279

Query: 913  VPSPSSARIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRL 1092
            VPS +S RI++PI RD +NRIRM AV    +++ AR AASR+RV+EVLAGG  ALVEWRL
Sbjct: 280  VPSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRL 339

Query: 1093 ETGRTHQIRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSL 1272
            ETGRTHQIRAHAKYL IPLLGDEVYGGT N+ LSLLRT+   S HG +++++S LQRP L
Sbjct: 340  ETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCL 399

Query: 1273 HALSLGFKHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            HA +LGFKHP TGE+++FSCPPP+DF++VLS L  I  +K
Sbjct: 400  HAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEK 439


>KCW70505.1 hypothetical protein EUGRSUZ_F03712 [Eucalyptus grandis]
          Length = 462

 Score =  472 bits (1214), Expect = e-158
 Identities = 245/378 (64%), Positives = 285/378 (75%), Gaps = 9/378 (2%)
 Frame = +1

Query: 286  TNYGGIRLEETMEG--PGRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKVSQV 456
            + Y G+RL ET++   PG+ RLDAWISSR+  VSRARVQSSIR GLV VNGR V+KVS  
Sbjct: 65   SGYAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHN 124

Query: 457  IKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTLVNA 636
            ++AGD V CT+SEL PLRAEPEDIP+DIVYED HV+VVNKPAHMVVHPAPGN +GTLVNA
Sbjct: 125  VRAGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNA 184

Query: 637  ILNHCQLP------VETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAASVRPGIVHRLD 798
            IL+HC LP       E  S                      +  S S  SVRPGIVHRLD
Sbjct: 185  ILHHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLD 244

Query: 799  KGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIR 978
            KGTSGLLVVAKN  SHAHLSEQFK HTI RVYVSLT GVPS +S RI++PI RD NNRIR
Sbjct: 245  KGTSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIR 304

Query: 979  MVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGD 1158
            M A+ G  N + AR AASR++V+EVLAGG+ ALVEWRLETGRTHQIRAHAKY+ IPLLGD
Sbjct: 305  MSAIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGD 364

Query: 1159 EVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPP 1338
            EVYGGT N++LSLL+ K+P  R   ++E++S L+RP LHA+SLGF HP TGE+V+FSC P
Sbjct: 365  EVYGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQP 424

Query: 1339 PSDFSKVLSLLHRISRDK 1392
            P DFS++L  L R+   K
Sbjct: 425  PEDFSEILCQLRRLGMKK 442


>XP_011649466.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis sativus]
          Length = 430

 Score =  469 bits (1207), Expect = e-157
 Identities = 238/390 (61%), Positives = 290/390 (74%), Gaps = 2/390 (0%)
 Frame = +1

Query: 229  STELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARVQSSI 402
            ST   +D  +       R  NY G RLEET++  PG+ RLD+WIS R+  +SRARVQSSI
Sbjct: 40   STRCSSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSI 99

Query: 403  REGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPA 582
            R GLV VNGR ++KVS  +KAGD + CT+SEL PLRAEPEDI LDIVYED HV+VVNKPA
Sbjct: 100  RAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPA 159

Query: 583  HMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSA 762
            HMVVHPAPGN  GTLVNAILNHC LP+   ST                   FS     S 
Sbjct: 160  HMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSIGVFS---RVSE 216

Query: 763  ASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARID 942
            A +RPGIVHRLDKGTSGLLVVAK+ HSHAHLS QFK H+I RVY+SLT GVP  ++ RI+
Sbjct: 217  APIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE 276

Query: 943  IPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRA 1122
            +PI RDPNNRIRM A+ G+ NN +A+ AASR+ V+E+LA G  +LVEWRLETGRTHQIRA
Sbjct: 277  MPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRA 336

Query: 1123 HAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHP 1302
            HAKY+ IPLLGDEVYGGT ++ +SLLRT+   + HG + +++S+L+RP LHAL+LGF HP
Sbjct: 337  HAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHP 396

Query: 1303 DTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
             TG++++FSCPPP+DF+++LS L  I   K
Sbjct: 397  HTGKNIRFSCPPPTDFTEILSQLREIGTQK 426


>XP_011649465.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis sativus] KGN62268.1 hypothetical protein
            Csa_2G346580 [Cucumis sativus]
          Length = 432

 Score =  469 bits (1207), Expect = e-157
 Identities = 238/390 (61%), Positives = 290/390 (74%), Gaps = 2/390 (0%)
 Frame = +1

Query: 229  STELVADEHKDKSWMERRNTNYGGIRLEETME-GPGRSRLDAWISSRLP-VSRARVQSSI 402
            ST   +D  +       R  NY G RLEET++  PG+ RLD+WIS R+  +SRARVQSSI
Sbjct: 40   STRCSSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSI 99

Query: 403  REGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPA 582
            R GLV VNGR ++KVS  +KAGD + CT+SEL PLRAEPEDI LDIVYED HV+VVNKPA
Sbjct: 100  RAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPA 159

Query: 583  HMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSA 762
            HMVVHPAPGN  GTLVNAILNHC LP+   ST                   FS     S 
Sbjct: 160  HMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSIGVFS---RVSE 216

Query: 763  ASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARID 942
            A +RPGIVHRLDKGTSGLLVVAK+ HSHAHLS QFK H+I RVY+SLT GVP  ++ RI+
Sbjct: 217  APIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIE 276

Query: 943  IPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRA 1122
            +PI RDPNNRIRM A+ G+ NN +A+ AASR+ V+E+LA G  +LVEWRLETGRTHQIRA
Sbjct: 277  MPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRA 336

Query: 1123 HAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHP 1302
            HAKY+ IPLLGDEVYGGT ++ +SLLRT+   + HG + +++S+L+RP LHAL+LGF HP
Sbjct: 337  HAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHP 396

Query: 1303 DTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
             TG++++FSCPPP+DF+++LS L  I   K
Sbjct: 397  HTGKNIRFSCPPPTDFTEILSQLREIGTQK 426


>XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha
            curcas] XP_012078836.1 PREDICTED: RNA pseudouridine
            synthase 2, chloroplastic [Jatropha curcas]
          Length = 426

 Score =  468 bits (1203), Expect = e-157
 Identities = 239/375 (63%), Positives = 281/375 (74%), Gaps = 2/375 (0%)
 Frame = +1

Query: 274  ERRNTNYGGIRLEETMEGP-GRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKV 447
            + +  NY G+RLEET+E   G+ RLD+WISSR+  +SRARVQSSI+ GLV VNGR V+KV
Sbjct: 57   QNQRINYAGLRLEETVEAKSGKLRLDSWISSRISGISRARVQSSIKSGLVAVNGRVVDKV 116

Query: 448  SQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTL 627
            S  +K GDKVICT+SEL PLRAE EDIPLDI+YED H++VVNKP HMVVHPAPGN  GTL
Sbjct: 117  SHSVKVGDKVICTISELQPLRAEAEDIPLDIIYEDDHLLVVNKPPHMVVHPAPGNPTGTL 176

Query: 628  VNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAASVRPGIVHRLDKGT 807
            VN IL+HC LP    S+                        SS  +SVRPGIVHRLDKGT
Sbjct: 177  VNGILHHCSLPTVVTSSQEVLSDVEDISDDEGSC------SSSCVSSVRPGIVHRLDKGT 230

Query: 808  SGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIRMVA 987
            SGLLVVAK+ H+HAHLSEQFK HTI RVY+SLT+GVPS  + RIDIPI RD NNRIRM A
Sbjct: 231  SGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMAA 290

Query: 988  VSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGDEVY 1167
            +SG V   +AR AASR++V+E+LAGG  ALVEWRLETGRTHQIRAHAKY+ IPLLGDEVY
Sbjct: 291  ISGPVKQGHARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVY 350

Query: 1168 GGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPPPSD 1347
            G T  + LSLLR +IP S    ++ +LS L+RP LHALSLGF HP TG+++ FSCPPP D
Sbjct: 351  GSTTGMALSLLRPRIPASFQNQLSSLLSGLERPCLHALSLGFTHPRTGKEINFSCPPPPD 410

Query: 1348 FSKVLSLLHRISRDK 1392
            F+ VLS L  +  +K
Sbjct: 411  FAGVLSQLREMDMEK 425


>KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  468 bits (1204), Expect = e-157
 Identities = 241/393 (61%), Positives = 295/393 (75%), Gaps = 3/393 (0%)
 Frame = +1

Query: 223  ATSTELVADEHKDKSWMERRNTNYGGIRLEETMEGP--GRSRLDAWISSRLP-VSRARVQ 393
            ATS    A +H++ +      T+Y G++LEET++    G+ RLD+WISSR+  +SRARVQ
Sbjct: 43   ATSISTSAAKHEEPT-----RTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQ 97

Query: 394  SSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVN 573
            SSI+ GLV VNGR V+KVS  ++AGDKV C +S+L PL+AEPEDIPLDIV+ED HV+VVN
Sbjct: 98   SSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVN 157

Query: 574  KPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPES 753
            KP+HMVVHPAPGN NGTLVN IL+HC LP    S                      +  S
Sbjct: 158  KPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSE---KEVLFDTEDMSDDEQDIFHGAS 214

Query: 754  SSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSA 933
            + AASVRPGIVHRLDKGTSGLLVVAK+ HSHAHLSEQFK HTI RVY+SLT GVPS S+ 
Sbjct: 215  AGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSASAG 274

Query: 934  RIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQ 1113
            R+DIPI RD NNRIRMVAV G  ++  AR AASR++V+EVLAGG  ALV+WRLETGRTHQ
Sbjct: 275  RVDIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQ 334

Query: 1114 IRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGF 1293
            IRAHAKY+ IPLLGDEVYGGT N+ LSLLR + PP  +  ++ ++S L+RP LHAL LGF
Sbjct: 335  IRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGF 394

Query: 1294 KHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            +HP +GE ++FSCPPP DF ++L+ L +I  +K
Sbjct: 395  EHPHSGEKMRFSCPPPPDFGEILNHLRKIGIEK 427


>XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Gossypium arboreum]
          Length = 432

 Score =  466 bits (1200), Expect = e-156
 Identities = 240/393 (61%), Positives = 294/393 (74%), Gaps = 3/393 (0%)
 Frame = +1

Query: 223  ATSTELVADEHKDKSWMERRNTNYGGIRLEETMEGP--GRSRLDAWISSRLP-VSRARVQ 393
            ATS    A +H++ +      T+Y G++LEET++    G+ RLD+WISSR+  +SRARVQ
Sbjct: 43   ATSISTSAAKHEEPT-----RTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQ 97

Query: 394  SSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVN 573
            SSI+ GLV VNGR V+KVS  ++AGDKV C +S+L PL+AEPEDIPLDIV+ED HV+VVN
Sbjct: 98   SSIKSGLVKVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVN 157

Query: 574  KPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPES 753
            KP+HMVVHPAPGN NGTLVN IL+HC LP    S                      +  S
Sbjct: 158  KPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSE---KEVLFDTEDMSDDEQDIFHGAS 214

Query: 754  SSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSA 933
            + AASVRPGIVHRLDKGTSGLLVVAK+ HSHAHLSEQFK HTI RVY+SLT GVPS S+ 
Sbjct: 215  AGAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSASAG 274

Query: 934  RIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQ 1113
            R+DIPI RD NNRIRM AV G  ++  AR AASR++V+EVLAGG  ALV+WRLETGRTHQ
Sbjct: 275  RVDIPIGRDSNNRIRMAAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQ 334

Query: 1114 IRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGF 1293
            IRAHAKY+ IPLLGDEVYGGT N+ LSLLR + PP  +  ++ ++S L+RP LHAL LGF
Sbjct: 335  IRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGF 394

Query: 1294 KHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            +HP +GE ++FSCPPP DF ++L+ L +I  +K
Sbjct: 395  EHPHSGEKMRFSCPPPPDFGEILNHLRKIGIEK 427


>XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Gossypium hirsutum]
          Length = 432

 Score =  466 bits (1200), Expect = e-156
 Identities = 242/393 (61%), Positives = 294/393 (74%), Gaps = 3/393 (0%)
 Frame = +1

Query: 223  ATSTELVADEHKDKSWMERRNTNYGGIRLEETMEGP--GRSRLDAWISSRLP-VSRARVQ 393
            ATS    A +H+     E   T+Y G++LEET++    G+ RLD+WISSR+  +SRARVQ
Sbjct: 43   ATSISTSATKHE-----EPIRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQ 97

Query: 394  SSIREGLVFVNGRTVEKVSQVIKAGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVN 573
            SSI+ GLV VNGR V+KVS  ++AGDKV C +S+L PL+AEPEDIPLDIV+ED HV+VVN
Sbjct: 98   SSIKSGLVKVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVN 157

Query: 574  KPAHMVVHPAPGNRNGTLVNAILNHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPES 753
            KP+HMVVHPAPGN NGTLVN IL+HC LP    S                      +  S
Sbjct: 158  KPSHMVVHPAPGNANGTLVNGILHHCSLPTVASSE---KEVLFDTQDMSDDEQDIFHGAS 214

Query: 754  SSAASVRPGIVHRLDKGTSGLLVVAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSA 933
            + AASVRPGIVHRLDKGTSGLLVVAK+ +SHAHLSEQFK HTI RVY+SLT GVPS SS 
Sbjct: 215  AGAASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSASSG 274

Query: 934  RIDIPIARDPNNRIRMVAVSGSVNNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQ 1113
            R+DIPI RD NNRIRMVAV G  ++  AR AASR++V+EVLAGG  ALV+WRLETGRTHQ
Sbjct: 275  RVDIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGRTHQ 334

Query: 1114 IRAHAKYLRIPLLGDEVYGGTNNLVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGF 1293
            IRAHAKY+ IPLLGDEVYGGT N+ LSLLR + PP  +  ++ ++S L+RP LHAL LGF
Sbjct: 335  IRAHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGF 394

Query: 1294 KHPDTGEDVKFSCPPPSDFSKVLSLLHRISRDK 1392
            +HP +GE ++FSCPPP DF ++L+ L +I  +K
Sbjct: 395  EHPHSGEKMRFSCPPPPDFGEILNHLRKIGIEK 427


>XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  466 bits (1198), Expect = e-156
 Identities = 236/370 (63%), Positives = 281/370 (75%), Gaps = 2/370 (0%)
 Frame = +1

Query: 289  NYGGIRLEETMEGP-GRSRLDAWISSRLP-VSRARVQSSIREGLVFVNGRTVEKVSQVIK 462
            NY G++LEET++   G+ RLDAWISSR+  +SRARVQSSIR GLV +NG+ V KVS  +K
Sbjct: 54   NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113

Query: 463  AGDKVICTVSELLPLRAEPEDIPLDIVYEDSHVIVVNKPAHMVVHPAPGNRNGTLVNAIL 642
             GD V CT+SEL PLRAE EDIPLDIVYED +V+VVNKPAHMVVHPAPGN  GTLVN IL
Sbjct: 114  GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173

Query: 643  NHCQLPVETHSTIFXXXXXXXXXXXXXXXXAFSYPESSSAASVRPGIVHRLDKGTSGLLV 822
            +HC LP    S                      +  S S AS+RPGIVHRLDKGTSGLLV
Sbjct: 174  HHCSLPTLASSN------QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227

Query: 823  VAKNGHSHAHLSEQFKHHTIHRVYVSLTAGVPSPSSARIDIPIARDPNNRIRMVAVSGSV 1002
            VAK+ HSHAHLSEQFK HTI RVY+SLT+GVPS SS RI++PI+RDPNNRIRM A+ GS 
Sbjct: 228  VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 287

Query: 1003 NNKNARRAASRFRVLEVLAGGACALVEWRLETGRTHQIRAHAKYLRIPLLGDEVYGGTNN 1182
             +  AR AASR++V+E+LAGG  ALVEWRLETGRTHQIRAHAKY+ IPLLGDEVYGGT N
Sbjct: 288  KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKN 347

Query: 1183 LVLSLLRTKIPPSRHGYITEILSNLQRPSLHALSLGFKHPDTGEDVKFSCPPPSDFSKVL 1362
            +  SLL+ +  P  HG + +++S LQRP LHA++LGF HP T E ++FSCPPP+DF+++L
Sbjct: 348  MAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEIL 407

Query: 1363 SLLHRISRDK 1392
            S L  I  +K
Sbjct: 408  SQLREIGTEK 417


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