BLASTX nr result
ID: Alisma22_contig00010676
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Alisma22_contig00010676
(644 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009241908.1 RNA polymerase beta subunit (plastid) [Sagittaria... 122 1e-28
YP_009161546.1 RNA polymerase beta subunit (chloroplast) [Pinell... 121 3e-28
YP_005097866.1 RNA polymerase beta subunit (chloroplast) [Coloca... 121 3e-28
YP_009144971.1 RNA polymerase beta subunit (chloroplast) [Dieffe... 119 1e-27
YP_001595500.1 RNA polymerase beta subunit [Lemna minor] A9L988.... 119 1e-27
YP_003433967.1 RNA polymerase beta subunit [Typha latifolia] AAZ... 119 2e-27
YP_004769939.1 RNA polymerase beta subunit (chloroplast) [Wolffi... 119 2e-27
AFB18353.1 RNA polymerase beta subunit, partial (plastid) [Sparg... 119 2e-27
AEK94334.2 RNA polymerase beta subunit (chloroplast) [Spirodela ... 119 3e-27
YP_004769622.1 RNA polymerase beta subunit (chloroplast) [Spirod... 119 3e-27
YP_009129610.1 RNA polymerase beta subunit (chloroplast) [Paphio... 119 3e-27
OAY80287.1 DNA-directed RNA polymerase subunit beta [Ananas como... 118 3e-27
YP_009116334.1 RNA polymerase beta subunit (chloroplast) [Ananas... 118 5e-27
YP_004769804.1 RNA polymerase beta subunit (chloroplast) [Wolffi... 118 5e-27
AFB18334.1 RNA polymerase beta subunit, partial (plastid) [Foste... 118 5e-27
AFB18349.1 RNA polymerase beta subunit, partial (plastid) [Pitca... 118 5e-27
AFB18346.1 RNA polymerase beta subunit, partial (plastid) [Neore... 118 5e-27
AFB18325.1 RNA polymerase beta subunit, partial (plastid) [Brocc... 118 5e-27
AFB18344.1 RNA polymerase beta subunit, partial (plastid) [Navia... 118 5e-27
YP_009241738.1 RNA polymerase beta subunit (plastid) [Tofieldia ... 117 7e-27
>YP_009241908.1 RNA polymerase beta subunit (plastid) [Sagittaria lichuanensis]
AMQ13482.1 RNA polymerase beta subunit (plastid)
[Sagittaria lichuanensis]
Length = 1076
Score = 122 bits (307), Expect = 1e-28
Identities = 60/64 (93%), Positives = 62/64 (96%)
Frame = +3
Query: 423 KIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPAR 602
K+DSWGSIESPFYEISEKSKEAEAQMIYLS SRDEYYMIAAGNSL+LNRGIQEEQV PAR
Sbjct: 443 KMDSWGSIESPFYEISEKSKEAEAQMIYLSASRDEYYMIAAGNSLSLNRGIQEEQVAPAR 502
Query: 603 YRQE 614
YRQE
Sbjct: 503 YRQE 506
>YP_009161546.1 RNA polymerase beta subunit (chloroplast) [Pinellia ternata]
AKJ83683.1 RNA polymerase beta subunit (chloroplast)
[Pinellia ternata]
Length = 1072
Score = 121 bits (304), Expect = 3e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SKE EAQM+YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKEKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_005097866.1 RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
AEK48398.1 RNA polymerase beta subunit (chloroplast)
[Colocasia esculenta] AEK48484.1 RNA polymerase beta
subunit (chloroplast) [Colocasia esculenta]
Length = 1072
Score = 121 bits (304), Expect = 3e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SKE EAQM+YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKEKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_009144971.1 RNA polymerase beta subunit (chloroplast) [Dieffenbachia seguine]
AKJ83426.1 RNA polymerase beta subunit (chloroplast)
[Dieffenbachia seguine]
Length = 1072
Score = 119 bits (299), Expect = 1e-27
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFY ISE+SKE EAQM+YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYRISERSKEKEAQMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_001595500.1 RNA polymerase beta subunit [Lemna minor] A9L988.1 RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
ABD48487.1 RNA polymerase beta subunit (chloroplast)
[Lemna minor]
Length = 1072
Score = 119 bits (299), Expect = 1e-27
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIE+PFYEISE+SKE EA+MIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIETPFYEISERSKEKEARMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_003433967.1 RNA polymerase beta subunit [Typha latifolia] AAZ03995.1 RNA
polymerase beta chain, partial (chloroplast) [Typha
latifolia] ADA63691.1 RNA polymerase beta subunit
(chloroplast) [Typha latifolia]
Length = 1072
Score = 119 bits (298), Expect = 2e-27
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SKE E+QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKEKESQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_004769939.1 RNA polymerase beta subunit (chloroplast) [Wolffia australiana]
AEK94500.1 RNA polymerase beta subunit (chloroplast)
[Wolffia australiana]
Length = 1072
Score = 119 bits (298), Expect = 2e-27
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIE+PFYEISE+SKE EA+M+YLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIETPFYEISERSKEKEARMVYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>AFB18353.1 RNA polymerase beta subunit, partial (plastid) [Sparganium
eurycarpum]
Length = 1083
Score = 119 bits (298), Expect = 2e-27
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SKE E+QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 453 VRIGHWGSIESPFYEISERSKEKESQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 512
Query: 600 RYRQE 614
RYRQE
Sbjct: 513 RYRQE 517
>AEK94334.2 RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
Length = 1072
Score = 119 bits (297), Expect = 3e-27
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SK+ EA+M+YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKDKEARMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_004769622.1 RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
Length = 1072
Score = 119 bits (297), Expect = 3e-27
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SK+ EA+M+YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKDKEARMVYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_009129610.1 RNA polymerase beta subunit (chloroplast) [Paphiopedilum niveum]
AIC82655.1 RNA polymerase beta subunit (chloroplast)
[Paphiopedilum niveum]
Length = 1074
Score = 119 bits (297), Expect = 3e-27
Identities = 55/65 (84%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
VK+ WGSIESPFYE+SE+SKE EAQM+YLSP+RDEYYM+AAGNSLALNRGIQE+QVVPA
Sbjct: 444 VKVGYWGSIESPFYELSERSKEEEAQMVYLSPNRDEYYMVAAGNSLALNRGIQEQQVVPA 503
Query: 600 RYRQE 614
RYRQE
Sbjct: 504 RYRQE 508
>OAY80287.1 DNA-directed RNA polymerase subunit beta [Ananas comosus]
Length = 582
Score = 118 bits (295), Expect = 3e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 445 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 504
Query: 600 RYRQE 614
RYRQE
Sbjct: 505 RYRQE 509
>YP_009116334.1 RNA polymerase beta subunit (chloroplast) [Ananas comosus]
BAQ19633.1 RNA polymerase beta subunit (chloroplast)
[Ananas comosus] AKU47124.1 RNA polymerase beta subunit
(chloroplast) [Ananas comosus] AMX23229.1 RNA polymerase
beta subunit (plastid) [Ananas comosus] ANE11134.1 RNA
polymerase beta subunit (plastid) [Ananas comosus]
Length = 1072
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>YP_004769804.1 RNA polymerase beta subunit (chloroplast) [Wolffiella lingulata]
AEK94417.1 RNA polymerase beta subunit (chloroplast)
[Wolffiella lingulata]
Length = 1072
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 62/65 (95%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIE+PFYEISE+SKE EA+M+YLSP+RDEYYMIAAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIETPFYEISERSKEKEARMVYLSPNRDEYYMIAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506
>AFB18334.1 RNA polymerase beta subunit, partial (plastid) [Fosterella
caulescens]
Length = 1082
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 452 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPTRDEYYMVAAGNSLALNRGIQEEQVVPA 511
Query: 600 RYRQE 614
RYRQE
Sbjct: 512 RYRQE 516
>AFB18349.1 RNA polymerase beta subunit, partial (plastid) [Pitcairnia
feliciana]
Length = 1085
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 455 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 514
Query: 600 RYRQE 614
RYRQE
Sbjct: 515 RYRQE 519
>AFB18346.1 RNA polymerase beta subunit, partial (plastid) [Neoregelia
carolinae]
Length = 1085
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 455 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 514
Query: 600 RYRQE 614
RYRQE
Sbjct: 515 RYRQE 519
>AFB18325.1 RNA polymerase beta subunit, partial (plastid) [Brocchinia
micrantha]
Length = 1085
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 455 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 514
Query: 600 RYRQE 614
RYRQE
Sbjct: 515 RYRQE 519
>AFB18344.1 RNA polymerase beta subunit, partial (plastid) [Navia saxicola]
Length = 1087
Score = 118 bits (295), Expect = 5e-27
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISEK KE E QM+YLSP+RDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 455 VRIGHWGSIESPFYEISEKQKEKEPQMVYLSPNRDEYYMVAAGNSLALNRGIQEEQVVPA 514
Query: 600 RYRQE 614
RYRQE
Sbjct: 515 RYRQE 519
>YP_009241738.1 RNA polymerase beta subunit (plastid) [Tofieldia thibetica]
AMQ13312.1 RNA polymerase beta subunit (plastid)
[Tofieldia thibetica]
Length = 1072
Score = 117 bits (294), Expect = 7e-27
Identities = 56/65 (86%), Positives = 61/65 (93%)
Frame = +3
Query: 420 VKIDSWGSIESPFYEISEKSKEAEAQMIYLSPSRDEYYMIAAGNSLALNRGIQEEQVVPA 599
V+I WGSIESPFYEISE+SK EAQ++YLSPSRDEYYM+AAGNSLALNRGIQEEQVVPA
Sbjct: 442 VRIGHWGSIESPFYEISERSKSKEAQILYLSPSRDEYYMVAAGNSLALNRGIQEEQVVPA 501
Query: 600 RYRQE 614
RYRQE
Sbjct: 502 RYRQE 506