BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00004879
         (2307 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ONM06831.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        63   2e-20
ONM04508.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        60   1e-18
AQK91609.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        56   4e-17
ABB00038.1 reverse transcriptase family member [Glycine max]           86   3e-14
AQK86413.1 hypothetical protein ZEAMMB73_Zm00001d038359 [Zea may...    54   7e-14
EMT14674.1 Methyltransferase-like protein 13 [Aegilops tauschii]       48   9e-13
AQK68857.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        69   1e-12
ONM31372.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        52   6e-12
CBL94163.1 putative RNA-directed DNA polymerase (Reverse transcr...    64   8e-12
ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        70   5e-10
AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        73   9e-10
AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        72   2e-09
ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        70   2e-09
AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        69   2e-09
AQK92248.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        70   2e-09
AQK92237.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        70   2e-09
AQK92238.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] ...    70   2e-09
AQK92235.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] ...    70   2e-09
AQK92256.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        70   2e-09
ONM38170.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]        69   2e-09

>ONM06831.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 986

 Score = 63.2 bits (152), Expect(3) = 2e-20
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SK  YM C+F      +G    +   + K   FR L S+
Sbjct: 746  VSQKLELWRQTLEAKGFRLSRSKIEYMKCDFSAMGYEDGDVSLDGQVVLKKDTFRYLGSM 805

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 806  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PQVPHKLKGKFYRTAIRPAMLYGAE 861

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 862  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 912

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 913  QHRLRWFGH 921



 Score = 56.6 bits (135), Expect(3) = 2e-20
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*HILQTTCFV------MPSRSTICAVVL---------K 2172
            TNYRGIKL++HTMK+   ++    + + TC        MP RST+ A+ L         +
Sbjct: 574  TNYRGIKLMSHTMKLWERVIEH-RLRKMTCVTQNQFGFMPGRSTMEAIFLLRQLMERFRE 632

Query: 2171 WEGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
             +  LHM F+DLEKAYD V   +L   LEK+   +  +N
Sbjct: 633  QKKDLHMVFIDLEKAYDKVPRSVLWWALEKHKVATKYIN 671



 Score = 30.0 bits (66), Expect(3) = 2e-20
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 2076 VPIQYT*LKKCMILQQQVSALLEDKHRELFELG-----ASRIGLYLFGQVTDELTMHEWD 1912
            V  +Y  L K M      S    D   + F++       S +  YLF  V DE+T     
Sbjct: 665  VATKYINLIKDMYTNVVTSVRTSDGDTDDFQINIGLHQGSALSPYLFALVIDEVTRDIQG 724

Query: 1911 DILS*TLFDEDTVMIDETK 1855
            DI    LF +D V+I+E++
Sbjct: 725  DIPWCMLFADDVVLIEESR 743


>ONM04508.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 834

 Score = 60.1 bits (144), Expect(3) = 1e-18
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I R L     + Q  C  MP RST+ A+ L         + 
Sbjct: 590  TNYRGIKLMSHTMKLWERVIERRLRKMTSMTQNQCGFMPGRSTMEAIFLLRQLMERFREQ 649

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 650  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVSTKYIN 687



 Score = 52.0 bits (123), Expect(3) = 1e-18
 Identities = 23/68 (33%), Positives = 41/68 (60%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 762  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAVGYEDGDVSLDGQVVPKKDTFRYLGSM 821

Query: 1672 IQMDGDVQ 1649
            +Q +GD++
Sbjct: 822  LQKEGDIE 829



 Score = 31.6 bits (70), Expect(3) = 1e-18
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 1959 YLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETK 1855
            YLF  V DE+T     DI    LFD+D V+I+E++
Sbjct: 725  YLFALVIDEVTRDIQGDIPWCMLFDDDVVLIEESR 759


>AQK91609.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 493

 Score = 55.8 bits (133), Expect(3) = 4e-17
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = -3

Query: 1849 NDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSVI 1670
            + K++LW   LD+ GF+++ SKT YM C+F      +G    +   +PK   FR L S++
Sbjct: 418  SQKLELWRQTLDAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDEQVVPKKDTFRYLGSML 477

Query: 1669 QMDGDVQ*CVPHNL 1628
            Q +GD+   V H +
Sbjct: 478  QKEGDIDEDVSHRI 491



 Score = 55.1 bits (131), Expect(3) = 4e-17
 Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 245  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 304

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN*RNV*YFNSKCQHSWRTNTENY 1989
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N     Y N     S RTN ++ 
Sbjct: 305  KKDLHMDFIDLEKAYDKVPRSVMWWDLEKHKVSTKYINLIKDMYTN--VVTSVRTNDDDT 362

Query: 1988 SSW-----VHQESA 1962
            + +     +HQ SA
Sbjct: 363  NDFPINIGLHQGSA 376



 Score = 27.7 bits (60), Expect(3) = 4e-17
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETK 1855
            S +  YLF  V DE+T     +I    LF +D V+I+E++
Sbjct: 375  SALSPYLFALVIDEVTRDIQGEIPWCMLFADDVVLIEESR 414


>ABB00038.1 reverse transcriptase family member [Glycine max]
          Length = 377

 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            LN++++ W  AL+++GF+++ SK+ YM C F + R++N   K     IP++ +F+ L SV
Sbjct: 136  LNERLETWRRALETHGFRLSRSKSEYMECQFNKRRVSNSEVKIGDHIIPQVTRFKYLGSV 195

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            IQ DG+++  V H +        K   + C+     K+P++L  KFYRTA +P   Y   
Sbjct: 196  IQDDGEIEGDVNHRIQAGWMKWRKASGVLCDA----KVPIKLKGKFYRTAVRPTILYGTE 251

Query: 1522 CI*E*KLGDE*TRSH*NECG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*RE 1352
            C             H N+ G      M  W   + +   +     +E  GVA I +K  E
Sbjct: 252  CW-------AVKSQHENKVG-VAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVE 303

Query: 1351 GRLKWYGH 1328
             RL+W+GH
Sbjct: 304  NRLRWFGH 311


>AQK86413.1 hypothetical protein ZEAMMB73_Zm00001d038359 [Zea mays] AQK86417.1
            hypothetical protein ZEAMMB73_Zm00001d038359 [Zea mays]
          Length = 477

 Score = 53.9 bits (128), Expect(3) = 7e-14
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*-----HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK+   ++         + Q     MP RST+ A+ L         + 
Sbjct: 245  TNYRGIKLMSHTMKLWERVIEHRLRKLTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 304

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 305  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 342



 Score = 45.4 bits (106), Expect(3) = 7e-14
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM CNF      +G    +   +PK   FR L S+
Sbjct: 417  VSQKLELWRQTLEAKGFRLSRSKTEYMKCNFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 476

Query: 1672 I 1670
            +
Sbjct: 477  L 477



 Score = 28.1 bits (61), Expect(3) = 7e-14
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETK 1855
            S +  YLF  V DE+T     DI    LF +D ++I+E++
Sbjct: 375  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVLLIEESR 414


>EMT14674.1 Methyltransferase-like protein 13 [Aegilops tauschii]
          Length = 1134

 Score = 47.8 bits (112), Expect(3) = 9e-13
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*HILQTTCFV-------MPSRSTICAVVL--------- 2175
            TNYRGIKL++HTMK+   ++   H L+    V       MP RST+ A+ L         
Sbjct: 388  TNYRGIKLMSHTMKLWERVIE--HRLRRMTSVTKNQFGFMPGRSTMEAIFLVRQLMVRYR 445

Query: 2174 KWEGTLHMGFVDLEKAYDLV 2115
            + +  LHM F+DLEKAY+ +
Sbjct: 446  EQKKDLHMVFIDLEKAYNKI 465



 Score = 47.0 bits (110), Expect(3) = 9e-13
 Identities = 25/75 (33%), Positives = 42/75 (56%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            +N K++LW   L+S G +++ +KT YM C F  +R     +   +V +P+   FR L S+
Sbjct: 559  VNRKLELWRQTLESKGLRLSRTKTEYMMCGFSTTRCEEEVSLDGQV-VPQKDTFRYLGSM 617

Query: 1672 IQMDGDVQ*CVPHNL 1628
            +Q DG +   V H +
Sbjct: 618  LQEDGGIDEDVNHRI 632



 Score = 28.9 bits (63), Expect(3) = 9e-13
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 2076 VPIQYT*LKKCMILQQQVSALLEDKHRELFELG-----ASRIGLYLFGQVTDELTMHEWD 1912
            VP +Y  L K M      S    D   + F +       S +  YLF  + DE+T     
Sbjct: 478  VPAKYITLIKDMYDNAVTSVRTSDIDTDDFPIKIGLHQGSALSPYLFALLMDEVTRDIQG 537

Query: 1911 DILS*TLFDEDTVMIDETK 1855
            DI    LF +D V++D+++
Sbjct: 538  DIPWCMLFADDVVLVDDSR 556


>AQK68857.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 557

 Score = 54.7 bits (130), Expect(2) = 1e-12
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 145  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 204

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 205  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVSTKYIN 242



 Score = 48.9 bits (115), Expect(2) = 1e-12
 Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DIL   LF +D V+I+E++  + +         L   R 
Sbjct: 275  SALSPYLFALVIDEVTRDIQGDILWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 326

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 327  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 379

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++  +  
Sbjct: 380  EGDIDEDVSHRIKAGWLKWQQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWSTK 437

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + + +V EMC+LR  CG TR + +RND  ++++G
Sbjct: 438  RRHVQQLSVAEMCMLRWLCGHTRRDRVRNDDIRERVG 474



 Score = 68.6 bits (166), Expect(2) = 1e-09
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 317  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 376

Query: 1672 IQMDGDVQ*CVPHNL-------DKMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q +GD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 377  LQKEGDIDEDVSHRIKAGWLKWQQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 432

Query: 1522 CI*E*KLGDE*TRSH*NECG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*RE 1352
            C           R H  +        M  W     +   +     +E  GVA IE+K  +
Sbjct: 433  CW-------STKRRHVQQLS-VAEMCMLRWLCGHTRRDRVRNDDIRERVGVAPIEEKLMQ 484

Query: 1351 GRLKWYGH 1328
             RL+W+GH
Sbjct: 485  HRLRWFGH 492



 Score = 25.0 bits (53), Expect(2) = 1e-09
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 1271 IQRRRGMPQLTWKTLIKR 1218
            ++R RG P LTW   +KR
Sbjct: 513  VKRGRGRPTLTWTEAVKR 530


>ONM31372.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 401

 Score = 52.4 bits (124), Expect(3) = 6e-12
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*HILQTTCFV-------MPSRSTICAVVL--------- 2175
            TNY GIKL++HTMK+   ++   H L+    V       MP RST+ A+ L         
Sbjct: 185  TNYCGIKLMSHTMKLWERVIE--HCLRKMTSVTQNQFGFMPGRSTMDAIFLLRQLMERFR 242

Query: 2174 KWEGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            + +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 243  EQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVSTKYIN 282



 Score = 37.0 bits (84), Expect(3) = 6e-12
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNF 1760
            ++ K++LW   L++ GF+++ SKT YM C+F
Sbjct: 357  VSQKLELWRQTLEAKGFRLSRSKTGYMKCDF 387



 Score = 31.6 bits (70), Expect(3) = 6e-12
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETK 1855
            S +G YLF  V DE+T     DI    LF +D V+I+E++
Sbjct: 315  SALGPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESR 354


>CBL94163.1 putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
            domestica]
          Length = 622

 Score = 63.5 bits (153), Expect(2) = 8e-12
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANG-GAK*NRVHIPKIGKFRSLLS 1676
            +N K+ LW   L+S G  ++ SKT YM C F  +   N  G +     IPK  +FR L S
Sbjct: 411  VNAKLNLWREVLESKGLCLSRSKTEYMECKFSANGSQNELGVRIGDQEIPKSDRFRYLGS 470

Query: 1675 VIQMDGDVQ*CVPHNLDK-MV*MNCNCGM--*QKIPLRLNRKFYRTANQPYNQPCI*E*K 1505
            ++Q +G++   + H +    +      G+   +++PL+L  KFYRTA +P          
Sbjct: 471  ILQKNGELDEDLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAML------- 523

Query: 1504 LGDE*TRSH*NECG*NVYFEMYVWEDKDKLLEK*HYKEENGVASIEDK*REGRLKWYGH 1328
                                      KDK+  +   + + GVA IE K RE  L+W+GH
Sbjct: 524  --------------------------KDKIRNE-DIRGKVGVAEIEGKMRENWLRWFGH 555



 Score = 37.4 bits (85), Expect(2) = 8e-12
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD 1852
            S +  YLF  V DELT H  DDI    LF  D V+IDET++
Sbjct: 369  SSLSPYLFALVMDELTGHIQDDIPWCMLFAYDIVLIDETQE 409


>ONM06616.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 55.8 bits (133), Expect(2) = 5e-10
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*HILQTTCFV------MPSRSTICAVVL---------K 2172
            TNYRGIKL++HTMK+   ++    + + TC        MP RST+ A+ L         +
Sbjct: 604  TNYRGIKLMSHTMKLWERVIEH-RLRKMTCVTQNQFGFMPGRSTMEAIFLLRQLMERFRE 662

Query: 2171 WEGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
             +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 663  QKKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 701



 Score = 38.9 bits (89), Expect(2) = 5e-10
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 734  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 785

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 786  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 838

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 839  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 896

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 897  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933



 Score = 69.7 bits (169), Expect = 2e-08
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 776  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 835

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 836  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 891

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 892  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 942

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 943  QHRLRWFGH 951


>AQK78701.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 55.8 bits (133), Expect(2) = 9e-10
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMKIGRGLLSK*HILQTTCFV------MPSRSTICAVVL---------K 2172
            TNYRGIKL++HTMK+   ++    + + TC        MP RST+ A+ L         +
Sbjct: 604  TNYRGIKLMSHTMKLWERVIEH-RLRKMTCVTQNQFGFMPGRSTMEAIFLLRQLMERFRE 662

Query: 2171 WEGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
             +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 663  QKKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 701



 Score = 38.1 bits (87), Expect(2) = 9e-10
 Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+IDE++  + +         L   R 
Sbjct: 734  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIDESRSGVSQ--------KLELWRQ 785

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 786  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 838

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 839  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 896

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM + R  CG TR + +RND  ++++G
Sbjct: 897  RRHVQQLCVAEMRMWRWICGHTRRDRVRNDDIRERVG 933



 Score = 72.8 bits (177), Expect = 2e-09
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 15/190 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 776  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 835

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 836  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 891

Query: 1522 CI*E*KLGDE*TRSH*NECG*NVYFEMYVW-----EDKDKLLEK*HYKEENGVASIEDK* 1358
            C           R H  +       EM +W       +   +     +E  GVA IE+K 
Sbjct: 892  CW-------PTKRRHVQQL---CVAEMRMWRWICGHTRRDRVRNDDIRERVGVAPIEEKL 941

Query: 1357 REGRLKWYGH 1328
             + RL+W+GH
Sbjct: 942  MQHRLRWFGH 951


>AQL03708.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 604  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 663

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 664  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 701



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 734  SALSPYLFALVMDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 785

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 786  TLEAKGFRLSRSKTEYMKCDFSAMRYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 838

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 839  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 896

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 897  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933



 Score = 72.4 bits (176), Expect = 2e-09
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F   R  +G    +   +PK   FR L S+
Sbjct: 776  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMRYEDGDVSLDGQVVPKKDTFRYLGSM 835

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 836  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 891

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 892  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 942

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 943  QHRLRWFGH 951


>ONL92524.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 604  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 663

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 664  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 701



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 734  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 785

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 786  TLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 838

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 839  DGDIDKDVSHRIKAGWLKWRQAAGVLCDPRVPHKIKGKFYRTAIRPAM--LYGAECWPTK 896

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 897  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933



 Score = 69.7 bits (169), Expect = 2e-08
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F  +   +G    +   +PK   FR L S+
Sbjct: 776  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKKDTFRYLGSM 835

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P ++  KFYRTA +P   Y   
Sbjct: 836  LQKDGDIDKDVSHRIKAGWLKWRQAAGVLCD----PRVPHKIKGKFYRTAIRPAMLYGAE 891

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 892  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 942

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 943  QHRLRWFGH 951


>AQK84025.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 604  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 663

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 664  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 701



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 734  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 785

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 786  TLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 838

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 839  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTTIRPAM--LYGAECWPTK 896

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 897  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933



 Score = 68.9 bits (167), Expect = 3e-08
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F  +   +G    +   +PK   FR L S+
Sbjct: 776  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKKDTFRYLGSM 835

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRT  +P   Y   
Sbjct: 836  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTTIRPAMLYGAE 891

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 892  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 942

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 943  QHRLRWFGH 951


>AQK92248.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 844

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 432  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 491

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 492  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 529



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 562  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 613

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 614  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 666

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 667  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 724

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 725  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 761



 Score = 69.7 bits (169), Expect = 2e-08
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 604  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 663

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 664  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 719

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 720  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 770

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 771  QHRLRWFGH 779


>AQK92237.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 712

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 300  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 359

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 360  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 397



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 430  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 481

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 482  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 534

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 535  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 592

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 593  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 629



 Score = 69.7 bits (169), Expect = 1e-08
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 472  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 531

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 532  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 587

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 588  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 638

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 639  QHRLRWFGH 647


>AQK92238.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] AQK92243.1
            Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
            AQK92246.1 Retrovirus-related Pol polyprotein LINE-1 [Zea
            mays] AQK92251.1 Retrovirus-related Pol polyprotein
            LINE-1 [Zea mays] AQK92259.1 Retrovirus-related Pol
            polyprotein LINE-1 [Zea mays] AQK92260.1
            Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
            AQK92261.1 Retrovirus-related Pol polyprotein LINE-1 [Zea
            mays]
          Length = 591

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 179  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 238

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 239  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 276



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 309  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 360

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 361  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 413

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 414  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 471

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 472  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 508



 Score = 69.7 bits (169), Expect = 1e-08
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 351  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 410

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 411  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 466

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 467  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 517

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 518  QHRLRWFGH 526


>AQK92235.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays] AQK92242.1
            Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
            AQK92249.1 Retrovirus-related Pol polyprotein LINE-1 [Zea
            mays] AQK92250.1 Retrovirus-related Pol polyprotein
            LINE-1 [Zea mays] AQK92262.1 Retrovirus-related Pol
            polyprotein LINE-1 [Zea mays]
          Length = 576

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 164  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 223

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 224  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 261



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 294  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 345

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 346  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 398

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 399  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 456

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 457  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 493



 Score = 69.7 bits (169), Expect = 1e-08
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 336  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 395

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 396  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 451

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 452  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 502

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 503  QHRLRWFGH 511


>AQK92256.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 476

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 64   TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 123

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 124  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 161



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 194  SALSPYLFALVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRQ 245

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 246  TLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 298

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F    I      +Y ++     
Sbjct: 299  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAM--LYGAECWPTK 356

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 357  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 393



 Score = 69.7 bits (169), Expect = 9e-09
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F      +G    +   +PK   FR L S+
Sbjct: 236  VSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVVPKKDTFRYLGSM 295

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFYRTA +P   Y   
Sbjct: 296  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYRTAIRPAMLYGAE 351

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 352  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 402

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 403  QHRLRWFGH 411


>ONM38170.1 Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1038

 Score = 54.3 bits (129), Expect(2) = 2e-09
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
 Frame = -2

Query: 2306 TNYRGIKLINHTMK-----IGRGLLSK*HILQTTCFVMPSRSTICAVVL---------KW 2169
            TNYRGIKL++HTMK     I   L     + Q     MP RST+ A+ L         + 
Sbjct: 626  TNYRGIKLMSHTMKLWERVIEHRLRKMTSVTQNQFGFMPGRSTMEAIFLLRQLMERFREQ 685

Query: 2168 EGTLHMGFVDLEKAYDLVRGRML*RVLEKNMCQSNTLN 2055
            +  LHM F+DLEKAYD V   ++   LEK+   +  +N
Sbjct: 686  KKDLHMVFIDLEKAYDKVPRSVMWWALEKHKVATKYIN 723



 Score = 38.5 bits (88), Expect(2) = 2e-09
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 19/217 (8%)
 Frame = -1

Query: 1974 SRIGLYLFGQVTDELTMHEWDDILS*TLFDEDTVMIDETKD*MIKFNFG*MH*ILMALR* 1795
            S +  YLF  V DE+T     DI    LF +D V+I+E++  + +         L   R 
Sbjct: 756  SALSPYLFTLVIDEVTRDIQGDIPWCMLFADDVVLIEESRSGVSQ--------KLELWRK 807

Query: 1794 IVAKQGICIVIS----------------GSLELQ-MVVPSRIECIYQKLASFVLCYQSSK 1666
             +  +G  +  S                G + L   VVP +    ++ L S +      K
Sbjct: 808  TLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKK--DTFRYLGSML-----QK 860

Query: 1665 WMVMFNDVCHTISTRWFK--*IAIVVCNKRYHSD*TGSFIEQPISHTTNHVYESKN*AMN 1492
               +  DV H I   W K    A V+C+ R      G F +  I      +Y ++     
Sbjct: 861  DGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYKTAIRPAM--LYGAECWPTK 918

Query: 1491 RQGLTKTNVVEMCILRCTCGKTRTNCLRNDTTKKKMG 1381
            R+ + +  V EM +LR  CG TR + +RND  ++++G
Sbjct: 919  RRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 955



 Score = 69.3 bits (168), Expect = 2e-08
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
 Frame = -3

Query: 1852 LNDKVQLWINALDSNGFKMNSSKTRYMHCNFRQSRIANGGAK*NRVHIPKIGKFRSLLSV 1673
            ++ K++LW   L++ GF+++ SKT YM C+F  +   +G    +   +PK   FR L S+
Sbjct: 798  VSQKLELWRKTLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVVPKKDTFRYLGSM 857

Query: 1672 IQMDGDVQ*CVPHNLD-------KMV*MNCNCGM*QKIPLRLNRKFYRTANQP---YNQP 1523
            +Q DGD+   V H +        +   + C+     ++P +L  KFY+TA +P   Y   
Sbjct: 858  LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCD----PRVPHKLKGKFYKTAIRPAMLYGAE 913

Query: 1522 CI*E*KLGDE*TRSH*NE-CG*NVYFEMYVW---EDKDKLLEK*HYKEENGVASIEDK*R 1355
            C           R H  + C       M  W     +   +     +E  GVA IE+K  
Sbjct: 914  CW-------PTKRRHVQQLC--VAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLM 964

Query: 1354 EGRLKWYGH 1328
            + RL+W+GH
Sbjct: 965  QHRLRWFGH 973