BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00004794
         (2232 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_008799751.1 PREDICTED: RNA polymerase sigma factor sigC [Phoe...   448   e-146
XP_010909938.2 PREDICTED: RNA polymerase sigma factor sigC [Elae...   439   e-142
XP_010244378.1 PREDICTED: RNA polymerase sigma factor sigC [Nelu...   430   e-139
OAY83758.1 RNA polymerase sigma factor sigC [Ananas comosus]          398   e-128
XP_009395048.1 PREDICTED: RNA polymerase sigma factor sigC [Musa...   400   e-127
XP_016677908.1 PREDICTED: RNA polymerase sigma factor sigC-like ...   392   e-124
ONK70030.1 uncharacterized protein A4U43_C05F29530 [Asparagus of...   391   e-124
ERN15250.1 hypothetical protein AMTR_s00056p00209700 [Amborella ...   389   e-124
XP_006853783.2 PREDICTED: RNA polymerase sigma factor sigC [Ambo...   389   e-123
XP_002275831.1 PREDICTED: RNA polymerase sigma factor sigC [Viti...   386   e-122
XP_017643422.1 PREDICTED: RNA polymerase sigma factor sigC-like ...   386   e-122
XP_016677905.1 PREDICTED: RNA polymerase sigma factor sigC-like ...   383   e-121
XP_017983625.1 PREDICTED: RNA polymerase sigma factor sigC [Theo...   381   e-120
XP_012450465.1 PREDICTED: RNA polymerase sigma factor sigC-like ...   380   e-120
XP_017227798.1 PREDICTED: RNA polymerase sigma factor sigC [Dauc...   380   e-120
JAT43949.1 RNA polymerase sigma factor rpoD [Anthurium amnicola]      380   e-120
XP_016683029.1 PREDICTED: RNA polymerase sigma factor sigC-like ...   380   e-119
CAN83254.1 hypothetical protein VITISV_036980 [Vitis vinifera]        381   e-119
OMO86642.1 RNA polymerase sigma-70 [Corchorus olitorius]              379   e-119
OMO66884.1 RNA polymerase sigma-70 [Corchorus capsularis]             379   e-119

>XP_008799751.1 PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score =  448 bits (1153), Expect = e-146
 Identities = 260/573 (45%), Positives = 357/573 (62%), Gaps = 39/573 (6%)
 Frame = -3

Query: 1969 MAVGFAVDC-RWAYPVRSP---RQCERR--------------------------RHGHSQ 1880
            M  GF V   RWA+P++SP     C R                           +H  ++
Sbjct: 1    MGFGFMVASKRWAFPIQSPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTE 60

Query: 1879 ETAGLQKCTSKSFTCS-AAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV- 1706
                L + TSK+  CS  A  +++   + A EV    K       + R    +  + +  
Sbjct: 61   RVELLHRDTSKACVCSFEAPQSIENMSADANEVNMDRKLLRGAHDLNRPINMMENDSSAY 120

Query: 1705 -SRSADDESLQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAIT 1529
             +R     SLQ++ L+ENL RIE +   +DL  ++RDILV I RLGAL+LF + L R   
Sbjct: 121  HARLTASSSLQYNLLMENLDRIEDVFAGTDLVRMQRDILVHIRRLGALKLFHACLSRTHI 180

Query: 1528 KVDSLNASTLHHFHE--IHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPS 1355
               + N++ LH  H     +E     +K + IV S           +AL  +SE S    
Sbjct: 181  TPTADNSNFLHSEHSGGCSLEFPLVEQKHNIIVRSGKKKERKLRRRRALERASEVS---- 236

Query: 1354 PLYGDKKVENTTTSGAACPGCPDRLANT----KPRDHIAWNESKLSMGVKDVANLERIHV 1187
             L G  K   TT S    P    +L N+    K R  IA NES++S GVK+VANLER ++
Sbjct: 237  ALLGSSKKNCTTFS---LPTGLGKLNNSSESRKRRVLIARNESEMSRGVKEVANLERTYI 293

Query: 1186 RMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGI 1007
            ++EEKIG+P S+ +WAEAA IDQK+L QRL FGW+CRD+L++STRSL++YLA+ Y+GMGI
Sbjct: 294  KLEEKIGQPASYARWAEAAGIDQKTLHQRLQFGWYCRDELIKSTRSLVIYLARKYRGMGI 353

Query: 1006 SFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKI 827
            +FDDL+QAG +GVL GAERFD+ RGY+FSTYVQYWI+KSM +++A+HS+GI+IP R+EKI
Sbjct: 354  AFDDLLQAGNLGVLNGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEKI 413

Query: 826  IKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKL 647
            IKQIQ+ RR  +  EG Y ++ E AE TG+S+  +RLA K SR +GSI+ ++ DG+  K 
Sbjct: 414  IKQIQEARRDFSSREGRYPRDEETAEFTGLSLDKVRLARKCSRTIGSIEQEIGDGWCTKF 473

Query: 646  MEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSL 467
            MEI PD S+K PSE+V++QH+R DI ++L GL PRE QV+ LRYG+ DGRC+SL EIG L
Sbjct: 474  MEITPDTSLKAPSEIVVRQHMREDIFEVLKGLHPREMQVLVLRYGLDDGRCKSLEEIGRL 533

Query: 466  ANVSKEWIRRIEKTALLKLRDEKTQEALKHYIH 368
             +V+KEWIR++EK AL K+R E+ Q  LKHY+H
Sbjct: 534  FHVTKEWIRKLEKAALSKIRREEIQRELKHYLH 566


>XP_010909938.2 PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 604

 Score =  439 bits (1128), Expect = e-142
 Identities = 253/567 (44%), Positives = 352/567 (62%), Gaps = 32/567 (5%)
 Frame = -3

Query: 1969 MAVGFAVDC-RWAYPVRSP---RQCERRRHGH-------------------------SQE 1877
            M  GF V   RWA+P++SP     C R    H                         ++ 
Sbjct: 42   MGFGFMVASKRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTER 101

Query: 1876 TAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNVSRS 1697
               L + T K++ CS  A      +S      +I+K      R   M     +  N    
Sbjct: 102  VELLHRDTLKAYVCSFEAPQSIENMSADACKVNIDKKLLKENRPINMIEEDSSSYNARLK 161

Query: 1696 ADDESLQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDS 1517
            A   SLQ+S L+ENL RIE +   +DL  L+RDILV I RLGAL+LF + L R +    +
Sbjct: 162  ASS-SLQYSLLMENLERIEDVFAGTDLVRLQRDILVHIRRLGALKLFHACLSRTLMAPTA 220

Query: 1516 LNASTLHHFHE--IHVELLADVKKTDAIVYSXXXXXXXXXXXK-ALSDSSEFSFLPSPLY 1346
             N+++LH  H     +E     +K + IV+S           + AL  +SE S L     
Sbjct: 221  DNSNSLHSKHSGGCSLEFPLGEQKHNIIVHSGKKKERKLRRRRRALERASEMSALSDSSK 280

Query: 1345 GDKKVENTTTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERIHVRMEEKIG 1166
             + K+ +  T         +   + K R  IA NES++S GVK+VANLER  +++EE+IG
Sbjct: 281  KNCKMFSLPTGLGKLNNSSE---SRKRRVLIARNESEMSRGVKEVANLERTRIKLEEEIG 337

Query: 1165 RPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQ 986
            +P S+ +WAEAA IDQK+L QRL FGW+CRDKL++STRSL++++A+ Y+GMGI+FDDL+Q
Sbjct: 338  QPASYARWAEAAGIDQKTLYQRLQFGWYCRDKLIKSTRSLVMFVARKYRGMGIAFDDLLQ 397

Query: 985  AGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKT 806
            AG VGVL GAERFD+ RGY+FSTYVQYWI+KSM +++A+HS+GI+IP R+EK+IK+IQ+ 
Sbjct: 398  AGNVGVLNGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEKVIKRIQEA 457

Query: 805  RRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDV 626
            RR  ++ EG Y ++ E AE TG+S+  +RLANK SR +GSI+  + DG+  K+MEI PD 
Sbjct: 458  RRDLSNREGRYPRDEETAEFTGLSLDKVRLANKCSRTVGSIEQGIGDGWCTKIMEITPDT 517

Query: 625  SMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEW 446
            S+K PSE+V+ QH+R DI ++L  L PRERQV+ LRYG+ DGRC+SL +IG L +V+KEW
Sbjct: 518  SLKAPSEIVMGQHMREDIFEVLKPLHPRERQVLVLRYGLDDGRCKSLEDIGRLFHVTKEW 577

Query: 445  IRRIEKTALLKLRDEKTQEALKHYIHL 365
            IR+IEK A  K+R E+ Q  LKHY++L
Sbjct: 578  IRKIEKAAFSKIRREEIQRELKHYLYL 604


>XP_010244378.1 PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
            XP_010244379.1 PREDICTED: RNA polymerase sigma factor
            sigC [Nelumbo nucifera]
          Length = 558

 Score =  430 bits (1105), Expect = e-139
 Identities = 250/566 (44%), Positives = 345/566 (60%), Gaps = 33/566 (5%)
 Frame = -3

Query: 1963 VGFAVDCRWAYPVRSPRQCERRRHGHS----------------------QETAGLQKCTS 1850
            +GF +D +W +PV+S          HS                      +E+  LQK   
Sbjct: 1    MGFGLDWKWVFPVQSHLLSHSSTRNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPL 60

Query: 1849 KSFTCSAAALA-VDRGLSQAEEVGDIEKNF-TSVPRMFRMSGSLRTEDNVSRSADDESLQ 1676
            K++ CS+  L  V+ G +      +  K F  S+   F        ED+ +  A  ++ +
Sbjct: 61   KAYACSSGTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARK 120

Query: 1675 ---FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLNAS 1505
               FS L+EN+ +IE I + SDL  LE+ ILVQ+ +LGAL LF + L R +    +LN  
Sbjct: 121  ISCFSLLMENVEKIEDIFVSSDLIRLEKGILVQLEKLGALNLFHACLSRTVKVSSALNLH 180

Query: 1504 TLHHFHEIHVELLADVKKTDAIVY-SXXXXXXXXXXXKALSDSSEFSFLP----SPLYGD 1340
            +     E   + L D + +D + + +           +   +S   S  P    SP  G 
Sbjct: 181  SA--LKECSKKYLMDGEMSDHVDHITVPSRRKEERKLRRERESKRASKKPALKSSPKCGI 238

Query: 1339 KKVENTTTSGAACPGCPDRLANTKPRD-HIAWNESKLSMGVKDVANLERIHVRMEEKIGR 1163
               + +T S A  P      A+ K R   IA NES++S  VK+V+ LERI   +EE++GR
Sbjct: 239  GGPQQSTISIAKRP------ASAKSRRLMIARNESEMSRAVKEVSCLERIRSNLEEELGR 292

Query: 1162 PVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQA 983
             +SF  WAEA  +D+K L+QRLHFGW+CRDKLLRSTRSL+VYLA+ Y+G+GI+F+DL+QA
Sbjct: 293  VISFSSWAEAVGLDEKELQQRLHFGWYCRDKLLRSTRSLVVYLARNYRGLGIAFEDLLQA 352

Query: 982  GKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTR 803
            G  GVL GAERFD +RGYRFSTYVQYWI+KSMS+LVAQHSRG+ IP  + + I QI KTR
Sbjct: 353  GNFGVLQGAERFDHTRGYRFSTYVQYWIRKSMSTLVAQHSRGVHIPLTLSRAINQIHKTR 412

Query: 802  RLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVS 623
            +   ++ G Y  ++E+++ TG+SVA +RLA K  R +GSID K+ D   +K ME +PD S
Sbjct: 413  KSFFNTHGRYPDDDEISKCTGLSVAKVRLAGKCLRVVGSIDQKMGDSLTVKFMEFMPDTS 472

Query: 622  MKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWI 443
            +KTP ++V++QH+R DIHKLL GL PRER+V+ LRYG+ DGRCRSL EIG L NV+KEWI
Sbjct: 473  IKTPEDIVMRQHMRKDIHKLLQGLHPRERKVLVLRYGLCDGRCRSLEEIGRLFNVTKEWI 532

Query: 442  RRIEKTALLKLRDEKTQEALKHYIHL 365
            R+IEK A+ K+R E+ Q  L  Y+HL
Sbjct: 533  RKIEKAAMTKVRTEEVQRNLSEYLHL 558


>OAY83758.1 RNA polymerase sigma factor sigC [Ananas comosus]
          Length = 449

 Score =  398 bits (1022), Expect = e-128
 Identities = 213/438 (48%), Positives = 291/438 (66%)
 Frame = -3

Query: 1681 LQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLNAST 1502
            LQF+ L+ENLH IE IL  +D+ +LERDILV I +LGAL+LF + L R  +   +L ++ 
Sbjct: 37   LQFNLLMENLHDIEDILSGTDMIMLERDILVHIKQLGALKLFRACLSRNFSVATTLESN- 95

Query: 1501 LHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYGDKKVENT 1322
                    VE   D +    IV +            A                 ++V+  
Sbjct: 96   -------FVETSFDEQNDRVIVRTAKARERKLRRKGA----------------SERVKEE 132

Query: 1321 TTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERIHVRMEEKIGRPVSFEKW 1142
            TT  A+ P       +   R  IA NESK+S GVK+VA LER   ++EE+ G+P S+ +W
Sbjct: 133  TT--ASMPSSVTYPGSRSKRASIAQNESKMSEGVKEVARLERARQKLEEQSGQPASYARW 190

Query: 1141 AEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQAGKVGVLL 962
            AEA  IDQK+L+QRL FGW CRDKL++STRSL++YLAK Y+GMGI+F+DLIQAG VGVL 
Sbjct: 191  AEAVGIDQKTLKQRLQFGWFCRDKLIKSTRSLVMYLAKNYRGMGIAFEDLIQAGNVGVLN 250

Query: 961  GAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTRRLHTDSE 782
            GAERFDS +GY+FSTYV+YWIKKS+ +L+A+H RGI+IP R+E +I++IQK RR   +  
Sbjct: 251  GAERFDSMKGYKFSTYVRYWIKKSILALIARHKRGIQIPVRMENMIQRIQKARRAFHNKR 310

Query: 781  GNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVSMKTPSEV 602
            G Y Q+ E A+LTG+S+AN+RLA K S  +GSID ++ +G+  K  E+ PD S+K+P E+
Sbjct: 311  GRYPQDEETAKLTGLSLANVRLARKCSLAVGSIDQEIGNGWCTKFAEVTPDQSIKSPYEI 370

Query: 601  VLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWIRRIEKTA 422
            +++Q +R  + +LL  L PRER+V+ LRYG+ DGRC+SL EIG L + SKEWIRR EK A
Sbjct: 371  IIRQQMRESLFQLLEKLHPREREVLLLRYGLVDGRCKSLDEIGKLFDASKEWIRRNEKAA 430

Query: 421  LLKLRDEKTQEALKHYIH 368
            L K+R E    A K+++H
Sbjct: 431  LSKIRKEDIHRAFKYFLH 448


>XP_009395048.1 PREDICTED: RNA polymerase sigma factor sigC [Musa acuminata subsp.
            malaccensis]
          Length = 570

 Score =  400 bits (1028), Expect = e-127
 Identities = 216/452 (47%), Positives = 300/452 (66%), Gaps = 13/452 (2%)
 Frame = -3

Query: 1681 LQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFD-SFLPRAITKVDSLNAS 1505
            L+F+ L+EN+ RIE ++  +D+  LERDIL  IG LGAL+LF  S + RA+     + + 
Sbjct: 128  LEFNLLMENIDRIEDLIAGADMVRLERDILTHIGSLGALKLFHTSCISRALMGSTVVYSD 187

Query: 1504 TL--HHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFS----------FL 1361
             +   H  +   E L D KK   IV+S           +A+  +S+ S           L
Sbjct: 188  FMVNKHLSDCPSEPLLDDKKGSTIVHSGKKEKRKLRRARAMEKASKMSSPQIFSKGRHLL 247

Query: 1360 PSPLYGDKKVENTTTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERIHVRM 1181
               L  +K V                  +   R+ IA NES++SMGVK++ANLE+I   +
Sbjct: 248  KRSLLLEKTVSRKLLG---------HFESENRREVIARNESEMSMGVKEIANLEKICKEL 298

Query: 1180 EEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISF 1001
            EE+IGRP S+ +WAEAA +D ++L+ RL FGW+CRD L++STRSL++++AK Y+GMGI+F
Sbjct: 299  EEEIGRPPSYTRWAEAAGVDMRTLQWRLQFGWYCRDTLIKSTRSLVMFIAKNYRGMGIAF 358

Query: 1000 DDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIK 821
            DDL+QAG VGVL GAERFD  +G RFSTYVQYWI+KS+ ++VA+HSR I++P R+E +IK
Sbjct: 359  DDLLQAGYVGVLNGAERFDMKKGNRFSTYVQYWIRKSILAMVARHSRMIQVPVRMESMIK 418

Query: 820  QIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLME 641
            +IQK RR H + EG   Q+ E+A+LTG+S+A +RLA+K SR +GSI+ ++RDG+  K  E
Sbjct: 419  RIQKARRTHYNREGRQPQDEEIAKLTGLSLAKVRLASKCSRAVGSIEQEIRDGWRTKFRE 478

Query: 640  IIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLAN 461
            II D S+ TP EV+ KQHLR D   LL  L PRERQV++LRYG+ DG C+SL E+G L +
Sbjct: 479  IIADASVGTPDEVIEKQHLRQDALNLLQTLHPRERQVLALRYGLEDGSCKSLEEVGRLCH 538

Query: 460  VSKEWIRRIEKTALLKLRDEKTQEALKHYIHL 365
            V+KEWIR+IEK A  K+R+E+  + L HY  L
Sbjct: 539  VTKEWIRKIEKEAWSKIRNEEMPKKLSHYRQL 570


>XP_016677908.1 PREDICTED: RNA polymerase sigma factor sigC-like isoform X2
            [Gossypium hirsutum]
          Length = 556

 Score =  392 bits (1007), Expect = e-124
 Identities = 225/514 (43%), Positives = 323/514 (62%), Gaps = 9/514 (1%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S E   L K   K++   AA   ++ G S  EE  +I+K   S      M G        
Sbjct: 50   SDEGVFLSKDPPKAYASPAALQTLENGCSDIEEKVNIDKGPQSQNCSHVMVGKSHEPIRG 109

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
            +RS+   S Q      ++ L++NLH +E   + SD+  LER+ILVQ+GRLGAL LF+ FL
Sbjct: 110  NRSSSCASPQTCKASRYNVLMDNLHVLEETFVDSDVLRLEREILVQLGRLGALNLFNIFL 169

Query: 1543 PRAITKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSF 1364
                + +  L+    +   E  +  L D +K   IV S           KA+  ++  + 
Sbjct: 170  SHKPSNIFDLSDDAANSL-ECIMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTTISTQ 228

Query: 1363 LP--SPLYGDKKVENTTTSGAACPGCPDRLANT-KPRDHIAWNESKLSMGVKDVANLERI 1193
            LP  + L+G  +    ++        P R++++ K R  +A NE ++S GVK VANLERI
Sbjct: 229  LPPTNTLHGRYQKPKRSS--------PKRMSDSRKRRSAVARNEVEMSKGVKVVANLERI 280

Query: 1192 HVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGM 1013
               +EE+ GR VS   WAEAA + +K L+Q LH+GW+CRD+L+RSTRSL++Y A+ Y+G+
Sbjct: 281  RATLEEETGRIVSLSCWAEAAKLTEKVLQQHLHYGWYCRDELIRSTRSLVLYFARNYRGL 340

Query: 1012 GISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIE 833
            GI+ +DLIQAG +GVL GAERFD +RGY+FSTY+QYWI+KS+S +VA+H+RGI++P  + 
Sbjct: 341  GIAHEDLIQAGSIGVLQGAERFDHTRGYKFSTYIQYWIRKSISRMVARHARGIQVPCTLS 400

Query: 832  KIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNM 653
            + I QIQK R+  + S G Y +E+E+A++TG+S++ IRLANK  R +GSID K+ D  N 
Sbjct: 401  RAIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRLANKCFRVVGSIDQKIGDYINA 460

Query: 652  KLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIG 473
            K +E IPD S+ +P + V++QH++ DI+ LL GL+ RERQV+ LRYG+     +SL EIG
Sbjct: 461  KYLEFIPDASICSPEKTVMRQHMKEDINDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIG 520

Query: 472  SLANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
             L  VSKEWIRRIE  A+ KLRD++T   L HY+
Sbjct: 521  RLFRVSKEWIRRIEMKAMAKLRDKETCRNLSHYL 554


>ONK70030.1 uncharacterized protein A4U43_C05F29530 [Asparagus officinalis]
          Length = 543

 Score =  391 bits (1005), Expect = e-124
 Identities = 221/545 (40%), Positives = 334/545 (61%), Gaps = 20/545 (3%)
 Frame = -3

Query: 1942 RWAYPVR--SPRQ----------------CERRRHGHSQETAGLQKCTSKSFTCSAAALA 1817
            RWA+P++  +P+Q                  R  H    E   + +   K++T S+ A  
Sbjct: 11   RWAFPIQPSAPKQPLRHPTALTGREALFESGRSTHHLVLEGGEVYRDAPKAYTYSSGATQ 70

Query: 1816 VDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNVSRSADDESLQFSYLLENLHRIEG 1637
              R  S+  +V     ++ S   +  M  S    +++ RS+    +QFS L+ENL  IE 
Sbjct: 71   STRS-SKIHDVELYRGSYNSSSPINTMEDSPACVESLRRSSSH--IQFSLLMENLGEIED 127

Query: 1636 ILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLNASTL--HHFHEIHVELLA 1463
            IL   D   LERDI++ IG+LGAL+LF + L R +    S+N+  L   +F         
Sbjct: 128  ILAGGDAVRLERDIMLHIGKLGALKLFRACLSRTLMAPTSINSDFLLTENFRGYSSSFPL 187

Query: 1462 DVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYGDKKVENTTTSGAACPGCPDR 1283
              ++   IV S           +A S  SE            KV++   S     G  + 
Sbjct: 188  SRQEAPTIVRSGRSEERRLRRMRASSKRSE------------KVKDPKVSAFTRWGGLEG 235

Query: 1282 LANTKPRDHIAWNESKLSMGVKDVANLERIHVRMEEKIGRPVSFEKWAEAAAIDQKSLRQ 1103
             + ++ R  IA  E++++ GVK++A+L+ + +++E +IG   S+ +WA+AA IDQK+L++
Sbjct: 236  PSESRSRPFIARKEAQMAKGVKEIADLDNVRLKLEGEIGHSASYARWAKAAGIDQKTLQR 295

Query: 1102 RLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQAGKVGVLLGAERFDSSRGYRF 923
            RL FGW+CRDKL++ST SL++YLA+ Y+G GI+FDDL+QAG +GVL GAERFD++RGYRF
Sbjct: 296  RLQFGWYCRDKLIKSTNSLVMYLARNYRGKGIAFDDLLQAGNIGVLKGAERFDNTRGYRF 355

Query: 922  STYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTRRLHTDSEGNYLQENELAELT 743
            STYVQYWI+KSM +L+A HS+ I+IP  +E+ IK+IQ  RR   D EG Y +++E+AELT
Sbjct: 356  STYVQYWIRKSMLALLAHHSKPIQIPVTVERSIKRIQTARRTFYDGEGRYPEDDEMAELT 415

Query: 742  GISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVSMKTPSEVVLKQHLRSDIHKL 563
            G+S+AN+R+A + SR   S+D ++ DG+ +K ME+ PD S+K+P  ++ +QH+ +DI +L
Sbjct: 416  GLSLANVRVARRCSRVAASLDKEIVDGWRLKFMEVTPDASIKSPDAIIGRQHMNNDIMEL 475

Query: 562  LAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWIRRIEKTALLKLRDEKTQEAL 383
            L  L+ RERQVI LRYG+ DGRC+S  EI  L+ V+KEWIR+IE+TAL K+  +  +  L
Sbjct: 476  LESLETRERQVILLRYGLIDGRCKSFGEIAKLSCVTKEWIRKIERTALSKICKDDIRREL 535

Query: 382  KHYIH 368
            K Y++
Sbjct: 536  KCYLN 540


>ERN15250.1 hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  389 bits (999), Expect = e-124
 Identities = 208/437 (47%), Positives = 288/437 (65%), Gaps = 1/437 (0%)
 Frame = -3

Query: 1675 FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLNASTLH 1496
            FS+L ENL +IEGI++ S    LER+IL+ I RLGAL+LF +FL R +     L+ +   
Sbjct: 97   FSFLFENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLKDPKILDVTGTC 156

Query: 1495 HFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYGDKKVENTTT 1316
              H +   +  D +    IV S           +AL   ++   + S L   KK   +  
Sbjct: 157  PEHAMVQPM--DEQADGYIVSSGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSIN 214

Query: 1315 SGAACPGCPDRLANTKPRDHI-AWNESKLSMGVKDVANLERIHVRMEEKIGRPVSFEKWA 1139
            +     G P    N+K R H+ A +E ++S GV++VA LE+I   +EE +GR  SF  WA
Sbjct: 215  AALTHKGHP---GNSKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWA 271

Query: 1138 EAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQAGKVGVLLG 959
            EAA I++K L+Q+LHFGW CRDKLLRSTR L++YLAK Y+G GI F+DL+QAG +GVL G
Sbjct: 272  EAAGINEKVLKQQLHFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQG 331

Query: 958  AERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTRRLHTDSEG 779
            AERFD +RGYRFSTYVQYWI+KS+S+LVA+HSRG++IP  + K++ Q  K +R      G
Sbjct: 332  AERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHG 391

Query: 778  NYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVSMKTPSEVV 599
             + +E E+AE TG+S+ N+RLANK  R  GSID ++ D +    ME+  D  ++TP ++V
Sbjct: 392  RHPREVEIAEFTGLSLVNVRLANKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMV 451

Query: 598  LKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWIRRIEKTAL 419
            +KQH+R  IH++L  L PRE+QV+ LRYG+ DGRC+SL EIG L NV+KEWIR+IEK AL
Sbjct: 452  MKQHMREAIHEVLVNLHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMAL 511

Query: 418  LKLRDEKTQEALKHYIH 368
             K+R E+ Q  L  +++
Sbjct: 512  EKVRKEEVQCNLNFFLN 528


>XP_006853783.2 PREDICTED: RNA polymerase sigma factor sigC [Amborella trichopoda]
          Length = 564

 Score =  389 bits (999), Expect = e-123
 Identities = 208/437 (47%), Positives = 288/437 (65%), Gaps = 1/437 (0%)
 Frame = -3

Query: 1675 FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLNASTLH 1496
            FS+L ENL +IEGI++ S    LER+IL+ I RLGAL+LF +FL R +     L+ +   
Sbjct: 132  FSFLFENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLKDPKILDVTGTC 191

Query: 1495 HFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYGDKKVENTTT 1316
              H +   +  D +    IV S           +AL   ++   + S L   KK   +  
Sbjct: 192  PEHAMVQPM--DEQADGYIVSSGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSIN 249

Query: 1315 SGAACPGCPDRLANTKPRDHI-AWNESKLSMGVKDVANLERIHVRMEEKIGRPVSFEKWA 1139
            +     G P    N+K R H+ A +E ++S GV++VA LE+I   +EE +GR  SF  WA
Sbjct: 250  AALTHKGHP---GNSKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWA 306

Query: 1138 EAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQAGKVGVLLG 959
            EAA I++K L+Q+LHFGW CRDKLLRSTR L++YLAK Y+G GI F+DL+QAG +GVL G
Sbjct: 307  EAAGINEKVLKQQLHFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQG 366

Query: 958  AERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTRRLHTDSEG 779
            AERFD +RGYRFSTYVQYWI+KS+S+LVA+HSRG++IP  + K++ Q  K +R      G
Sbjct: 367  AERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHG 426

Query: 778  NYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVSMKTPSEVV 599
             + +E E+AE TG+S+ N+RLANK  R  GSID ++ D +    ME+  D  ++TP ++V
Sbjct: 427  RHPREVEIAEFTGLSLVNVRLANKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMV 486

Query: 598  LKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWIRRIEKTAL 419
            +KQH+R  IH++L  L PRE+QV+ LRYG+ DGRC+SL EIG L NV+KEWIR+IEK AL
Sbjct: 487  MKQHMREAIHEVLVNLHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMAL 546

Query: 418  LKLRDEKTQEALKHYIH 368
             K+R E+ Q  L  +++
Sbjct: 547  EKVRKEEVQCNLNFFLN 563


>XP_002275831.1 PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
            CBI20603.3 unnamed protein product, partial [Vitis
            vinifera]
          Length = 561

 Score =  386 bits (992), Expect = e-122
 Identities = 230/567 (40%), Positives = 318/567 (56%), Gaps = 34/567 (5%)
 Frame = -3

Query: 1969 MAVGFAVDCRWAYPVRSP-------RQCERRRHGH---------------SQETAGLQKC 1856
            M +GF ++ +W +P+  P       R C     G                S++   L K 
Sbjct: 1    MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60

Query: 1855 TSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNVSRSADDESLQ 1676
              K F CS+ AL        A E   ++    S   +F++  + +       SA    LQ
Sbjct: 61   PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120

Query: 1675 ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAI---TKV 1523
                  FS LLENL  +E +   S++  LERDI+VQ+GRLGAL+LF   L R +   T  
Sbjct: 121  ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180

Query: 1522 DSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYG 1343
            D  +A T  H  E       D      +V S           +AL  +      P P   
Sbjct: 181  DLFSAPT-EHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLP--- 236

Query: 1342 DKKVENTTTSGAACPGCPD---RLANTKPRDHIAWNESKLSMGVKDVANLERIHVRMEEK 1172
                  T   G   P        L + + R   A NE+++S GVK VANLERI   +EE+
Sbjct: 237  ----SKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEE 292

Query: 1171 IGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDL 992
            IG   S   WAEAA +D+K L+Q+L FGW+CRD+LLRST SL++Y+A+ Y+GMG++F+D+
Sbjct: 293  IGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDI 352

Query: 991  IQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQ 812
            +QAG +GVL GAERFD ++GYRFSTYVQYWI+KSMS+LVA+H+RG++IP  + + I QIQ
Sbjct: 353  LQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQ 412

Query: 811  KTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIP 632
            K R+    S G Y  +NE+A+ TG+S+A IR A    R +GS D   +D +   ++E  P
Sbjct: 413  KARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTP 472

Query: 631  DVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSK 452
            D S+K+P E  ++Q  R DIH LL GL PRERQ++ LRYG  + + +SL EIG   NVSK
Sbjct: 473  DTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSK 532

Query: 451  EWIRRIEKTALLKLRDEKTQEALKHYI 371
            EWIR++EKTAL  LRDE+  + L+HY+
Sbjct: 533  EWIRKLEKTALANLRDEEICQNLRHYV 559


>XP_017643422.1 PREDICTED: RNA polymerase sigma factor sigC-like [Gossypium arboreum]
            XP_017643424.1 PREDICTED: RNA polymerase sigma factor
            sigC-like [Gossypium arboreum] KHG01096.1 RNA polymerase
            sigma factor rpoD [Gossypium arboreum]
          Length = 556

 Score =  386 bits (991), Expect = e-122
 Identities = 223/514 (43%), Positives = 321/514 (62%), Gaps = 9/514 (1%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S E   L K   K++   AA   ++ G S  EE  +I+K   S      M G        
Sbjct: 50   SDEGVFLSKDPPKAYASPAALQTLENGCSDIEEKVNIDKGPQSQNCSHVMVGKSHEPIRG 109

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
            +RS+   S Q      ++ L++NLH +E   + SD+  LE +ILVQ+GRLGAL LF+ FL
Sbjct: 110  NRSSSCASPQTCKASRYNVLMDNLHVLEETFVDSDVLRLESEILVQLGRLGALNLFNIFL 169

Query: 1543 PRAITKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSF 1364
                + +  L+    +   E  +  L D +K   IV S           KA+  ++  + 
Sbjct: 170  SHKPSNIFDLSDDAANSL-ECIMNGLVDSEKDKIIVSSRKNKQRRKRREKAVEATTISTQ 228

Query: 1363 LP--SPLYGDKKVENTTTSGAACPGCPDRLANT-KPRDHIAWNESKLSMGVKDVANLERI 1193
            LP  + L+G  +    ++        P R++++ K R  +A NE ++S GVK VANLERI
Sbjct: 229  LPPTNTLHGRYQKPKRSS--------PKRMSDSRKGRSAVARNEVEMSKGVKVVANLERI 280

Query: 1192 HVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGM 1013
               +EE+ GR VS   WAEAA + +K L+Q LH+GW+CRD+L+RSTRSL++Y A+ Y+G+
Sbjct: 281  RATLEEETGRIVSLSCWAEAAKLTEKVLQQHLHYGWYCRDELIRSTRSLVLYFARNYRGL 340

Query: 1012 GISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIE 833
            GI+ +DLIQAG +GVL GAERFD +RGY+FSTY+QYWI+KS+S +VA+H+RGI++P  + 
Sbjct: 341  GIAHEDLIQAGSIGVLQGAERFDHTRGYKFSTYIQYWIRKSISRMVARHARGIQVPCTLS 400

Query: 832  KIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNM 653
            + I QIQK R+  + S G Y +E+E+A++TG+S++ IR ANK  R +GSID K+ D  N 
Sbjct: 401  RAIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRSANKCFRVVGSIDQKIGDYINA 460

Query: 652  KLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIG 473
            K +E IPD S+ +P + V++QH++ DI+ LL GL+ RERQV+ LRYG+     +SL EIG
Sbjct: 461  KYLEFIPDASICSPEKTVMRQHMKEDINDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIG 520

Query: 472  SLANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
             L  VSKEWIRRIE  A+ KLRD++T   L HY+
Sbjct: 521  RLFCVSKEWIRRIEMKAMAKLRDKETCRNLSHYL 554


>XP_016677905.1 PREDICTED: RNA polymerase sigma factor sigC-like isoform X1
            [Gossypium hirsutum] XP_016677906.1 PREDICTED: RNA
            polymerase sigma factor sigC-like isoform X1 [Gossypium
            hirsutum]
          Length = 569

 Score =  383 bits (983), Expect = e-121
 Identities = 225/527 (42%), Positives = 323/527 (61%), Gaps = 22/527 (4%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S E   L K   K++   AA   ++ G S  EE  +I+K   S      M G        
Sbjct: 50   SDEGVFLSKDPPKAYASPAALQTLENGCSDIEEKVNIDKGPQSQNCSHVMVGKSHEPIRG 109

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
            +RS+   S Q      ++ L++NLH +E   + SD+  LER+ILVQ+GRLGAL LF+ FL
Sbjct: 110  NRSSSCASPQTCKASRYNVLMDNLHVLEETFVDSDVLRLEREILVQLGRLGALNLFNIFL 169

Query: 1543 PRAITKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSF 1364
                + +  L+    +   E  +  L D +K   IV S           KA+  ++  + 
Sbjct: 170  SHKPSNIFDLSDDAANSL-ECIMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTTISTQ 228

Query: 1363 LP--SPLYGDKKVENTTTSGAACPGCPDRLANT-KPRDHIAWNESKLSMGVKDVANLERI 1193
            LP  + L+G  +    ++        P R++++ K R  +A NE ++S GVK VANLERI
Sbjct: 229  LPPTNTLHGRYQKPKRSS--------PKRMSDSRKRRSAVARNEVEMSKGVKVVANLERI 280

Query: 1192 HVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGM 1013
               +EE+ GR VS   WAEAA + +K L+Q LH+GW+CRD+L+RSTRSL++Y A+ Y+G+
Sbjct: 281  RATLEEETGRIVSLSCWAEAAKLTEKVLQQHLHYGWYCRDELIRSTRSLVLYFARNYRGL 340

Query: 1012 GISFDDLIQA-------------GKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVA 872
            GI+ +DLIQA             G +GVL GAERFD +RGY+FSTY+QYWI+KS+S +VA
Sbjct: 341  GIAHEDLIQAALSYCMGPLTYHAGSIGVLQGAERFDHTRGYKFSTYIQYWIRKSISRMVA 400

Query: 871  QHSRGIRIPARIEKIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPM 692
            +H+RGI++P  + + I QIQK R+  + S G Y +E+E+A++TG+S++ IRLANK  R +
Sbjct: 401  RHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRLANKCFRVV 460

Query: 691  GSIDSKLRDGFNMKLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYG 512
            GSID K+ D  N K +E IPD S+ +P + V++QH++ DI+ LL GL+ RERQV+ LRYG
Sbjct: 461  GSIDQKIGDYINAKYLEFIPDASICSPEKTVMRQHMKEDINDLLNGLEKRERQVMVLRYG 520

Query: 511  IHDGRCRSLSEIGSLANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
            +     +SL EIG L  VSKEWIRRIE  A+ KLRD++T   L HY+
Sbjct: 521  LTGSPPKSLEEIGRLFRVSKEWIRRIEMKAMAKLRDKETCRNLSHYL 567


>XP_017983625.1 PREDICTED: RNA polymerase sigma factor sigC [Theobroma cacao]
            XP_017983626.1 PREDICTED: RNA polymerase sigma factor
            sigC [Theobroma cacao]
          Length = 536

 Score =  381 bits (978), Expect = e-120
 Identities = 220/506 (43%), Positives = 321/506 (63%), Gaps = 13/506 (2%)
 Frame = -3

Query: 1849 KSFTCSAAALAVDRGLSQAEEVG-DIEK-------NFTSVPRMFRMSGSLRTEDNVSRSA 1694
            K++  SAA   +++G  + EE+  +I K       + T + +   + G  ++    S  A
Sbjct: 38   KAYASSAAPQTLEKGCLEIEEMKVNIGKGSQSHSHSLTMIDKTHELIGGDKSSSRTSPQA 97

Query: 1693 DDESLQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSL 1514
               S  +S L+ENL  +E     SD+  LER+IL+Q+GRLGAL+LF++ L R +   + L
Sbjct: 98   CKAS-HYSLLMENLDVLEETFADSDVLTLEREILLQLGRLGALKLFNTCLSRTLKASNIL 156

Query: 1513 NASTLH-HFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFS--FLPS-PLY 1346
            + S +  +  + ++ L  D +K   +V S           +AL + +  S   LPS  L+
Sbjct: 157  DLSDVPANSGDCNMNLSVDGQKDKTVVCSRKKKQRKKIRERALENPTIISTQLLPSNTLH 216

Query: 1345 GDKKVENTTTSGAACPGCPDRLANTKPRD-HIAWNESKLSMGVKDVANLERIHVRMEEKI 1169
            G  + +    S A       R+++++ R   IA NE+++S GVK VANLERI   +EE+ 
Sbjct: 217  G--RFQKPKVSSAK------RVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEET 268

Query: 1168 GRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLI 989
            GR  S   WAEAA + +K L+Q L FGW+CRD+LLRSTRSL++Y A+ Y+G+GI+ +DLI
Sbjct: 269  GRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLI 328

Query: 988  QAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQK 809
            QAG +GVL GAERFD +RGYRFSTYVQ+WI+KS+S +V +H+RGI++P  + + I QIQK
Sbjct: 329  QAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVTRHARGIQVPCTLSRAIVQIQK 388

Query: 808  TRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPD 629
             R+  + S G Y  E+ +A+ TG+S+A IR ANK  R +GSID K+ D  N K +E IPD
Sbjct: 389  ARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPD 448

Query: 628  VSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKE 449
            +S+++P + V++QH++ DIH LL GL  RERQV+ LRYG+     +SL EIG L +VSKE
Sbjct: 449  LSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKE 508

Query: 448  WIRRIEKTALLKLRDEKTQEALKHYI 371
            WIRRIE  A+  LRD++T   L HY+
Sbjct: 509  WIRRIEMKAMKNLRDKETCRNLSHYL 534


>XP_012450465.1 PREDICTED: RNA polymerase sigma factor sigC-like isoform X4
            [Gossypium raimondii] KJB65615.1 hypothetical protein
            B456_010G103500 [Gossypium raimondii]
          Length = 565

 Score =  380 bits (977), Expect = e-120
 Identities = 219/513 (42%), Positives = 318/513 (61%), Gaps = 8/513 (1%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S E   L K   K++   AA   ++ G S  EE  +I+K   S      M G        
Sbjct: 59   SDEGVFLSKDPPKAYASPAALQTLENGCSDKEEKVNIDKGPQSRNCSHVMVGKSHEPIRG 118

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
            +RS+   S Q      ++ L +NL+ +E   + SD+  LER+IL+Q+GRLGAL LF+ FL
Sbjct: 119  NRSSSCASPQTCKASRYNVLKDNLNVLEETFVDSDVLRLEREILLQLGRLGALNLFNIFL 178

Query: 1543 PRAITKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSS-EFS 1367
                + +  L+    +   E ++  L D +K   IV S           KA+  +     
Sbjct: 179  SHKPSNIFDLSDVAANSV-ECNMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTIISTQ 237

Query: 1366 FLPSPLYGDKKVENTTTSGAACPGCPDRLANTKPRD-HIAWNESKLSMGVKDVANLERIH 1190
             LP+     +  +   +S       P R+++++ R   +A NE ++S GVK VANLERI 
Sbjct: 238  LLPTNTLHGRYQKPKRSS-------PKRMSDSRKRRLAVARNEVEMSKGVKVVANLERIR 290

Query: 1189 VRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMG 1010
              +EE+ GR VS   WAEAA + +K+L+Q LH+GW+CRD+L+R+TRSL++Y A+ Y+G+G
Sbjct: 291  TTLEEETGRMVSLSCWAEAAKLTEKALQQHLHYGWYCRDELIRTTRSLVLYFARNYRGLG 350

Query: 1009 ISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEK 830
            I+ +DLIQAG +GVL GAERFD +RGY+FSTY+ YWI+KS+S +VA+H+RGI++P  + +
Sbjct: 351  IAHEDLIQAGSIGVLQGAERFDHTRGYKFSTYIHYWIRKSISRMVARHARGIQVPCTLSR 410

Query: 829  IIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMK 650
             I QIQK R+  + S G Y +E+E+A++TG+S++ IR ANK  R +GSID K+ D  N K
Sbjct: 411  AIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRSANKCFRVVGSIDQKIGDCINAK 470

Query: 649  LMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGS 470
             +E IPD S+ +P + V++QH++ DIH LL GL+ RERQV+ LRYG+     +SL EIG 
Sbjct: 471  YLEFIPDASICSPEKTVMRQHMKEDIHDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIGR 530

Query: 469  LANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
            L  VSKEWIRRIE  A+ KLRD++T   L HY+
Sbjct: 531  LFRVSKEWIRRIEMKAMAKLRDKETCRNLSHYL 563


>XP_017227798.1 PREDICTED: RNA polymerase sigma factor sigC [Daucus carota subsp.
            sativus] KZN11801.1 hypothetical protein DCAR_004457
            [Daucus carota subsp. sativus]
          Length = 553

 Score =  380 bits (975), Expect = e-120
 Identities = 221/569 (38%), Positives = 334/569 (58%), Gaps = 31/569 (5%)
 Frame = -3

Query: 1969 MAVGFAVDCRWAYPVRSPRQCERRRHGHSQETAGLQKCTSKSFTCSAAALAVDRGLSQAE 1790
            M +GF ++ RWA  VR P  C          T      +S SF    A+    R      
Sbjct: 1    MGIGFRLNFRWASSVRYPYYC----------TTSSSWPSSYSFRAMEASYDTTRVSFPYF 50

Query: 1789 EVGDIEKNFTSVPRMFRMSGSLRTEDN------------------------------VSR 1700
             +G+IE     +PR+   + + +T  N                               + 
Sbjct: 51   VLGEIETMHNDLPRVHSCASAAQTLSNNYLETEHISIRKSSGGDLSCIISSSFRKPGSAT 110

Query: 1699 SADDESLQ-FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKV 1523
            SA+   L  F  L+ NL  +E     SD+  LE DIL Q+ RLGAL+LF + L R  ++ 
Sbjct: 111  SAEASKLSHFGVLMNNLSMLEKTFADSDVLRLENDILSQLDRLGALKLFHTCLSRTRSRP 170

Query: 1522 DSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYG 1343
             + + S     H++   + AD +    +V S           K+  +  +F  LPS    
Sbjct: 171  GNSSVSEDIEEHQMESHVNAD-QMAKIVVSSGKKEKRKAKRVKSSWNEKDFYLLPSNSKP 229

Query: 1342 DKKVENTTTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERIHVRMEEKIGR 1163
              + +N ++     PG   + + ++P+  +A NE++L++GVK VANLERI +++E++ G 
Sbjct: 230  KHQHQNLSS-----PGKSSKYSGSRPK--VARNEAELTVGVKLVANLERIKMQLEKETGE 282

Query: 1162 PVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQA 983
              S   WAEAA ID+K+L+Q LHFG +C+D+LLRSTRSLI+Y+A+ Y+G+G+ F+DLIQA
Sbjct: 283  TASLSSWAEAANIDKKTLQQNLHFGCYCKDELLRSTRSLILYIARNYRGVGVGFEDLIQA 342

Query: 982  GKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTR 803
            G +GVL GAERFD +RGYRFSTY+QYWI+KS+  LV ++ RG+RIP  + K +K+IQK R
Sbjct: 343  GSIGVLQGAERFDHTRGYRFSTYIQYWIRKSILMLVERNCRGVRIPYALSKAVKKIQKAR 402

Query: 802  RLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVS 623
            +  ++S G Y  +NE+AE TG+S++ I  A+   R +GS+D ++ D  ++K +E++PD S
Sbjct: 403  KTLSNSLGTYPDDNEIAESTGLSLSKIAAASNCLRVVGSLDQRIGDFTSVKYLELMPDTS 462

Query: 622  MKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWI 443
            +K P E V+++H+  D++ LLA L PRERQV+ LR G+    C SL EIG L +VSKEWI
Sbjct: 463  IKGPEETVMREHMLKDMYDLLAELDPRERQVLLLRLGLQGHHCMSLQEIGRLFSVSKEWI 522

Query: 442  RRIEKTALLKLRDEKTQEALKHYIHLSQI 356
            R+IE+TAL KLRD++T  +L HY++++ +
Sbjct: 523  RKIERTALRKLRDQETLHSLSHYLYMNHM 551


>JAT43949.1 RNA polymerase sigma factor rpoD [Anthurium amnicola]
          Length = 563

 Score =  380 bits (975), Expect = e-120
 Identities = 208/441 (47%), Positives = 291/441 (65%), Gaps = 4/441 (0%)
 Frame = -3

Query: 1675 FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLPRAITKVDSLN-ASTL 1499
            FS L+ENL  IE IL+ S+L  LERDILV + RLG L++F++ L R      SL+ A  +
Sbjct: 124  FSLLMENLDEIENILVDSELVRLERDILVHVKRLGVLKVFNTCLSRTYKIPVSLSLAFPI 183

Query: 1498 HHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSFLPSPLYGDKKVENTT 1319
                   +   A+   T+  V S           +A   +++ S L   L    K+ +  
Sbjct: 184  TGPRGYFINFPANDPMTNIAVTSRRKKERRLRRQRASEKTAKTSSLAPSL----KIIHED 239

Query: 1318 TSG--AACPGCPDRLANTKPRDH-IAWNESKLSMGVKDVANLERIHVRMEEKIGRPVSFE 1148
             SG  ++        + ++ + H +A NE+ +SMGVKDVA LE+  + +E++ G+  S  
Sbjct: 240  RSGIVSSVTDLTRTYSKSRSKRHSLAKNEANMSMGVKDVAKLEKARMELEKRTGKKASLL 299

Query: 1147 KWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMGISFDDLIQAGKVGV 968
             WA+ A  D K+L+ RLH+GW+C+D+LL+STR L++YLA+ Y+GMGI+FDDLIQAG +G 
Sbjct: 300  SWAQLAETDAKTLQHRLHYGWYCKDRLLKSTRPLVIYLARSYRGMGIAFDDLIQAGNIGA 359

Query: 967  LLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEKIIKQIQKTRRLHTD 788
            L GAERFD SRGY+FSTYVQYWI+KSMSSLVA+HSR I IPA +EK IKQ+Q  RR  + 
Sbjct: 360  LRGAERFDPSRGYKFSTYVQYWIRKSMSSLVARHSRVIHIPATMEKAIKQLQNARRTLSS 419

Query: 787  SEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMKLMEIIPDVSMKTPS 608
            ++   LQ+ E+AE TG+S+A +RLA K +R +GSID K+ +  N+ + E+ P+ S+ TP 
Sbjct: 420  TDRRCLQDVEVAEFTGLSLAKVRLARKCARSVGSIDQKVGEALNIIVTEVTPNTSIPTPE 479

Query: 607  EVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGSLANVSKEWIRRIEK 428
            E V +Q +R DI KLL  L PRER+V+ LRYG  DGR  SL EIG L +VSKEW+R++E 
Sbjct: 480  ETVTRQLMRKDIDKLLGSLPPRERRVLLLRYGFVDGRRMSLEEIGRLLHVSKEWVRKLEI 539

Query: 427  TALLKLRDEKTQEALKHYIHL 365
            +AL K+R E+ QE L+HY+HL
Sbjct: 540  SALTKVRKEEIQEELRHYLHL 560


>XP_016683029.1 PREDICTED: RNA polymerase sigma factor sigC-like isoform X2
            [Gossypium hirsutum]
          Length = 564

 Score =  380 bits (975), Expect = e-119
 Identities = 220/513 (42%), Positives = 317/513 (61%), Gaps = 8/513 (1%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S E   L K   K+    AA   ++ G S  EE  +I+K   S      M G        
Sbjct: 58   SDEGVFLSKDPPKASASPAALQTLENGCSDIEEKVNIDKGPQSRNCSHVMVGKSHEPIRG 117

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
            +RS+   S Q      ++ L +NL+ +E   + SD+  LER+IL+Q+GRLGAL LF+ FL
Sbjct: 118  NRSSSCASPQTCKASRYNVLKDNLNVLEETFVDSDVLRLEREILLQLGRLGALNLFNIFL 177

Query: 1543 PRAITKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSS-EFS 1367
                + +  L+    +   E ++  L D +K   IV S           KA+  +     
Sbjct: 178  SHKPSNIFDLSDVAANSV-ECNMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTIISTQ 236

Query: 1366 FLPSPLYGDKKVENTTTSGAACPGCPDRLANT-KPRDHIAWNESKLSMGVKDVANLERIH 1190
             LP+     +  +   +S       P R++++ K R  +A NE ++S GVK VANLERI 
Sbjct: 237  LLPTNTLHGRYQKPKRSS-------PKRMSDSRKRRSAVARNEVEMSKGVKVVANLERIR 289

Query: 1189 VRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGMG 1010
              +EE+ GR VS   WAEAA + +K+L+Q LH+GW+CRD+L+R+TRSL++Y A+ Y+G+G
Sbjct: 290  TTLEEETGRIVSLSCWAEAAKLTEKALQQHLHYGWYCRDELIRTTRSLVLYFARNYRGLG 349

Query: 1009 ISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIEK 830
            I+ +DLIQAG +GVL GAERFD +RGY+FSTY+ YWI+KS+S +VA+H+RGI++P  + +
Sbjct: 350  IAHEDLIQAGSIGVLQGAERFDHTRGYKFSTYIHYWIRKSISRMVARHARGIQVPCTLSR 409

Query: 829  IIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNMK 650
             I QIQK R+  + S G Y +E+E+A++TG+S++ IR ANK  R +GSID K+ D  N K
Sbjct: 410  AIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRSANKCFRVVGSIDQKIGDCINAK 469

Query: 649  LMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIGS 470
             +E IPD S+ +P + V++QH++ DIH LL GL+ RERQV+ LRYG+     +SL EIG 
Sbjct: 470  YLEFIPDASICSPEKTVMRQHMKEDIHDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIGR 529

Query: 469  LANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
            L  VSKEWIRRIE  A+ KLRD++T   L HY+
Sbjct: 530  LFRVSKEWIRRIEMKAMAKLRDKETCRNLSHYL 562


>CAN83254.1 hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  381 bits (978), Expect = e-119
 Identities = 221/517 (42%), Positives = 303/517 (58%), Gaps = 12/517 (2%)
 Frame = -3

Query: 1885 SQETAGLQKCTSKSFTCSAAALAVDRGLSQAEEVGDIEKNFTSVPRMFRMSGSLRTEDNV 1706
            S++   L K   K F CS+ AL        A E   ++    S   +F++  + +     
Sbjct: 101  SEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGE 160

Query: 1705 SRSADDESLQ------FSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFL 1544
              SA    LQ      FS LLENL  +E +   S++  LERDI+VQ+GRLGAL+LF   L
Sbjct: 161  DISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICL 220

Query: 1543 PRAI---TKVDSLNASTLHHFHEIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSE 1373
             R +   T  D  +A T  H  E       D      +V S           +AL  +  
Sbjct: 221  SRTLKTSTSFDLFSAPT-EHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADN 279

Query: 1372 FSFLPSPLYGDKKVENTTTSGAACPGCPD---RLANTKPRDHIAWNESKLSMGVKDVANL 1202
                P P         T   G   P        L + + R   A NE+++S GVK VANL
Sbjct: 280  IYAFPLP-------SKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANL 332

Query: 1201 ERIHVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGY 1022
            ERI   +EE+IG   S   WAEAA +D+K L+Q+L FGW+CRD+LLRST SL++Y+A+ Y
Sbjct: 333  ERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNY 392

Query: 1021 KGMGISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPA 842
            +GMG++F+D++QAG +GVL GAERFD ++GYRFSTYVQYWI+KSMS+LVA+H+RG++IP 
Sbjct: 393  RGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPF 452

Query: 841  RIEKIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDG 662
             + + I QIQK R+    S G Y  +NE+A+ TG+S+A IR A    R +GS D   +D 
Sbjct: 453  TLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDC 512

Query: 661  FNMKLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLS 482
            +   ++E  PD S+K+P E  ++Q  R DIH LL GL PRERQ++ LRYG  + + +SL 
Sbjct: 513  WGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLE 572

Query: 481  EIGSLANVSKEWIRRIEKTALLKLRDEKTQEALKHYI 371
            EIG   NVSKEWIR++EKTAL  LRDE+  + L+HY+
Sbjct: 573  EIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609


>OMO86642.1 RNA polymerase sigma-70 [Corchorus olitorius]
          Length = 555

 Score =  379 bits (972), Expect = e-119
 Identities = 218/516 (42%), Positives = 311/516 (60%), Gaps = 8/516 (1%)
 Frame = -3

Query: 1888 HSQETAGLQKCTSKSFTCSAAALAVDRGLSQAEE----VGDIEKNFTSVPRMFRMSGSLR 1721
            +S E   L K   K++  SA    ++ G  + EE    +G   ++ T + +        +
Sbjct: 48   NSDEGVLLAKEPPKAYASSAVPQTLENGCFEIEEMKVNIGKGSQSHTKIDKTHEPIEGKK 107

Query: 1720 TEDNVSRSADDESLQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLP 1541
            +    S  A + S  +S L+ENL  +E     SD+  LER+I++Q+GRLGAL+LF+    
Sbjct: 108  SSSRTSPQACNAS-HYSLLMENLDVLEETFADSDVLTLEREIMLQLGRLGALKLFNICFS 166

Query: 1540 RAITKVDSLNASTLHHFH-EIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSF 1364
            R I     L+ S +     E +     D +    +V S           K L   +  S 
Sbjct: 167  RTIKASSVLDLSDVPASSGEFNTNGSTDSQNDKIVVRSRKKKQRQRRRDKLLEKPTTVSS 226

Query: 1363 LPSPL---YGDKKVENTTTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERI 1193
               PL   +G  K+ N ++          RL        IA NE+++S G+K VANLERI
Sbjct: 227  QVLPLKTLHGRLKMPNVSSGKRVSDSRSRRLM-------IARNEAEMSQGIKVVANLERI 279

Query: 1192 HVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGM 1013
               +EE+ G+ VS   WAEAA +++K L+Q+LHFGW+CRD+LLRSTRSL++Y A+ Y+G+
Sbjct: 280  RTTLEEETGKVVSLSCWAEAAGVNEKVLQQQLHFGWYCRDELLRSTRSLVLYFARNYRGL 339

Query: 1012 GISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIE 833
            GI+ +DLIQAG +GVL GAERFD +RGYRFSTYVQYWI+KS+  +VA+H+RGI++P  + 
Sbjct: 340  GIAHEDLIQAGSIGVLQGAERFDHTRGYRFSTYVQYWIRKSVLRMVARHARGIQVPCMLN 399

Query: 832  KIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNM 653
            K I QIQK R+  + S G    E+E+A+ TG+S+A IR ANK  R +GSID K+ D  N 
Sbjct: 400  KAIVQIQKARKALSQSHGKNPDEDEIAKFTGLSLAKIRSANKCMRIVGSIDQKIGDCMNA 459

Query: 652  KLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIG 473
            K +E IPD+S+++P + V++QH+  DI+ LL GL  RERQV+ LR+G+     RSL EIG
Sbjct: 460  KYLEFIPDLSIRSPEKTVMRQHMEKDIYDLLNGLDARERQVMVLRFGLKGSPPRSLEEIG 519

Query: 472  SLANVSKEWIRRIEKTALLKLRDEKTQEALKHYIHL 365
             +  VSKEWIRR+EK A+ K+RD +T   L HY+ L
Sbjct: 520  RVFRVSKEWIRRLEKKAMTKMRDTETCRNLSHYLDL 555


>OMO66884.1 RNA polymerase sigma-70 [Corchorus capsularis]
          Length = 555

 Score =  379 bits (972), Expect = e-119
 Identities = 220/516 (42%), Positives = 313/516 (60%), Gaps = 8/516 (1%)
 Frame = -3

Query: 1888 HSQETAGLQKCTSKSFTCSAAALAVDRGLSQAEE----VGDIEKNFTSVPRMFRMSGSLR 1721
            +S E   L K   K++  SA    ++ G  + EE    +G   ++ T + +        +
Sbjct: 48   NSDEGVLLAKEPPKAYASSAIPQTLENGCFEIEEMKVNIGKGSQSHTKIDKTHEPIEGKK 107

Query: 1720 TEDNVSRSADDESLQFSYLLENLHRIEGILIHSDLEVLERDILVQIGRLGALELFDSFLP 1541
            +    S  A + S  +S L+ENL  +E     SD+  LER+I++Q+GRLGAL+LF+    
Sbjct: 108  SSSRTSPQACNAS-HYSLLMENLDVLEETFADSDVLTLEREIVLQLGRLGALKLFNICFS 166

Query: 1540 RAITKVDSLNASTLHHFH-EIHVELLADVKKTDAIVYSXXXXXXXXXXXKALSDSSEFSF 1364
            R I     L+ S +     E +     D +K   +V S           K L   +  S 
Sbjct: 167  RTIKASSVLDLSDVPASSGEFNTNGSTDSQKDKIVVRSRKKKPRQRRRDKLLEKPTTVSS 226

Query: 1363 LPSPL---YGDKKVENTTTSGAACPGCPDRLANTKPRDHIAWNESKLSMGVKDVANLERI 1193
               PL   +G  K+ N ++          RL        IA NE+++S G+K VANLERI
Sbjct: 227  QVLPLKTLHGRLKMPNVSSGKRVSDSRSRRLM-------IARNEAEMSKGIKVVANLERI 279

Query: 1192 HVRMEEKIGRPVSFEKWAEAAAIDQKSLRQRLHFGWHCRDKLLRSTRSLIVYLAKGYKGM 1013
               +EE+ G+ VS   WAEAA +++K L+Q+L FGW+CRD+LLRSTRSL++Y A+ Y+G+
Sbjct: 280  RTTLEEETGKVVSLSCWAEAAGVNEKVLQQQLQFGWYCRDELLRSTRSLVLYFARNYRGL 339

Query: 1012 GISFDDLIQAGKVGVLLGAERFDSSRGYRFSTYVQYWIKKSMSSLVAQHSRGIRIPARIE 833
            GI+ +DLIQAG VGVL GAERFD +RGYRFSTYVQYWI+KS+S +VA+H+RGI++P  + 
Sbjct: 340  GIAHEDLIQAGSVGVLQGAERFDHTRGYRFSTYVQYWIRKSISRMVARHARGIQVPCMLS 399

Query: 832  KIIKQIQKTRRLHTDSEGNYLQENELAELTGISVANIRLANKWSRPMGSIDSKLRDGFNM 653
            K I QIQK ++  + S G    E+E+A+ TG+S+A IR ANK  R +GSID K+ D  N 
Sbjct: 400  KAIVQIQKAQKALSQSHGKNPDEDEIAKFTGLSLAKIRSANKCMRIVGSIDQKIGDCMNA 459

Query: 652  KLMEIIPDVSMKTPSEVVLKQHLRSDIHKLLAGLQPRERQVISLRYGIHDGRCRSLSEIG 473
            K +E IPD+S+++P + V++QH+  DI+ LL GL  RERQV+ LR+G+     RSL EIG
Sbjct: 460  KYLEFIPDLSIRSPEKTVMRQHMEKDIYDLLNGLDARERQVMVLRFGLKGSPPRSLEEIG 519

Query: 472  SLANVSKEWIRRIEKTALLKLRDEKTQEALKHYIHL 365
             L +VSKEWIRRIE+ A+ K+RD +T   L HY+ L
Sbjct: 520  RLFHVSKEWIRRIERKAMTKMRDTETCRNLSHYLDL 555