BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00004664
         (1348 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN...   457   e-155
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN...   457   e-148
ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass...   463   e-148
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop...   462   e-147
AAX92861.1 retrotransposon protein, putative, Ty1-copia sub-clas...   463   e-147
CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group]                461   e-147
AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]         458   e-147
XP_015080794.1 PREDICTED: uncharacterized protein LOC107024343 [...   469   e-146
ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass...   459   e-146
KYP47640.1 Retrovirus-related Pol polyprotein from transposon TN...   452   e-146
AAT44282.1 putative polyprotein [Oryza sativa Japonica Group]         456   e-146
AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AA...   454   e-144
AAT44257.1 putative polyprotein [Oryza sativa Japonica Group]         451   e-144
AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-clas...   459   e-142
KYP68590.1 Retrovirus-related Pol polyprotein from transposon TN...   426   e-142
AAL91607.1 Putative pol polyprotein [Oryza sativa Japonica Group...   437   e-140
KYP69994.1 Retrovirus-related Pol polyprotein from transposon TN...   418   e-139
AAL31093.1 putative retrotransposon-related protein [Oryza sativ...   438   e-139
ACS74199.1 putative gag-pol polyprotein [Fragaria x ananassa]         435   e-137
CAN81634.1 hypothetical protein VITISV_034565 [Vitis vinifera]        414   e-137

>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 503

 Score =  457 bits (1177), Expect = e-155
 Identities = 239/406 (58%), Positives = 298/406 (73%), Gaps = 19/406 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EE+ESLHKN TW L                   +G       + KARLV KG+ Q EGI+
Sbjct: 3    EEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGID 62

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P++ H+SIR+LL+ VA+ DLEL+QLDVKT FLHGELEE+IYM QPEGF    KE
Sbjct: 63   FNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKE 122

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            + VC LK+SLYGLKQ+PRQ            G+SRS YD C+Y++   D +F+YLLLYVD
Sbjct: 123  HLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVD 182

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIASR  S I+K+K+ L  EF+MK+LG AKKILGMEI RDR+ G+L L+Q+KYI+++L
Sbjct: 183  DMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLL 242

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + KPVSTPL AHF+LS+   PQ+ EE + M+HVPY+SA+GS+MYAMVCTRPD+A
Sbjct: 243  DRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLA 302

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVIT---TGYVDSDYAGDL 1028
            YAVS+VSRYM +PGK HW AVKWI RYLKGTSN  LVF   +  T    G+VDSDY GDL
Sbjct: 303  YAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDL 362

Query: 1029 DKRRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            D+RRSL+GY+FT+ ++ ISWKA+LQS  ALSTTEAEY++A E VKE
Sbjct: 363  DRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKE 408


>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  457 bits (1177), Expect = e-148
 Identities = 239/406 (58%), Positives = 298/406 (73%), Gaps = 19/406 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EE+ESLHKN TW L                   +G       + KARLV KG+ Q EGI+
Sbjct: 532  EEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGID 591

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P++ H+SIR+LL+ VA+ DLEL+QLDVKT FLHGELEE+IYM QPEGF    KE
Sbjct: 592  FNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKE 651

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            + VC LK+SLYGLKQ+PRQ            G+SRS YD C+Y++   D +F+YLLLYVD
Sbjct: 652  HLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVD 711

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIASR  S I+K+K+ L  EF+MK+LG AKKILGMEI RDR+ G+L L+Q+KYI+++L
Sbjct: 712  DMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLL 771

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + KPVSTPL AHF+LS+   PQ+ EE + M+HVPY+SA+GS+MYAMVCTRPD+A
Sbjct: 772  DRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLA 831

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVIT---TGYVDSDYAGDL 1028
            YAVS+VSRYM +PGK HW AVKWI RYLKGTSN  LVF   +  T    G+VDSDY GDL
Sbjct: 832  YAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDL 891

Query: 1029 DKRRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            D+RRSL+GY+FT+ ++ ISWKA+LQS  ALSTTEAEY++A E VKE
Sbjct: 892  DRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKE 937


>ABA98656.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  463 bits (1191), Expect = e-148
 Identities = 242/403 (60%), Positives = 289/403 (71%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EEM+SL KN TWE+                   EG       KYKARLVA+GYSQI G++
Sbjct: 838  EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVD 897

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR  LS+VA  DLEL+QLDVKT FLHGELEE IYM QPEGF    KE
Sbjct: 898  YNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKE 957

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
             +VC LKRSLYGLKQSPRQ           + F RS YD+CVY K ++  S +YLLLYVD
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVD 1016

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++   EI K+K LL  EFDMKDLG AKKILGMEI RDRK G L L+Q  YIKKVL
Sbjct: 1017 DMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVL 1076

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + K VSTP+  HF+LSA Q P  D E + M+ VPYSSA+GS+MYAMVC+RPD++
Sbjct: 1077 QRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLS 1136

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            YA+S+VSRYM++PGK HW+AV+WI RYL+GT+ +CL F        GYVDSDYA DLD+R
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR 1196

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FT+GS  +SW+ATLQS +ALSTTEAEYMA  E  KE
Sbjct: 1197 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239


>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
            [Solanum lycopersicum]
          Length = 1307

 Score =  462 bits (1188), Expect = e-147
 Identities = 235/404 (58%), Positives = 300/404 (74%), Gaps = 17/404 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEGD------KYKARLVAKGYSQIEGIE 167
            +EMESLHKNQTW+L                   EG       KYKAR+VA+G++Q EG++
Sbjct: 812  DEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVD 871

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGFE--DKE 341
               +  P++ H+SIRVLL++VA ++LEL+QLDVKT FLHGELEE+IYM QP+GF+   KE
Sbjct: 872  YNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKE 931

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            NHVC LK+SLYGLKQSPRQ            G++RSSYD CVYY  L+D+SF+YL+LYVD
Sbjct: 932  NHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVD 991

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++   +I K+K LL  EF+MKDLG A+KILGMEI RDR+  +L L+Q  YI+KVL
Sbjct: 992  DMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVL 1051

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF M   KP+ TP  A+  L+A+ +PQS+EE++ M+ VPY+SA+GS+MYAMVCTRPD+A
Sbjct: 1052 ARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLA 1111

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHG-AQVITTGYVDSDYAGDLDK 1034
            +AVSVVSR+M  PG+ HWQAVK I RYL+GTS+  L++ G  Q + TGY DSDYAGD+D 
Sbjct: 1112 HAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDT 1171

Query: 1035 RRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RRS+TGY+FT+G + +SWKATLQ T+ LSTTEAEYMA  E  KE
Sbjct: 1172 RRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKE 1215


>AAX92861.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] ABA92739.1 retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1373

 Score =  463 bits (1191), Expect = e-147
 Identities = 242/403 (60%), Positives = 289/403 (71%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EEM+SL KN TWE+                   EG       KYKARLVA+GYSQI G++
Sbjct: 838  EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVD 897

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR  LS+VA  DLEL+QLDVKT FLHGELEE IYM QPEGF    KE
Sbjct: 898  YNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKE 957

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
             +VC LKRSLYGLKQSPRQ           + F RS YD+CVY K ++  S +YLLLYVD
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVD 1016

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++   EI K+K LL  EFDMKDLG AKKILGMEI RDRK G L L+Q  YIKKVL
Sbjct: 1017 DMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVL 1076

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + K VSTP+  HF+LSA Q P  D E + M+ VPYSSA+GS+MYAMVC+RPD++
Sbjct: 1077 QRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLS 1136

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            YA+S+VSRYM++PGK HW+AV+WI RYL+GT+ +CL F        GYVDSDYA DLD+R
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR 1196

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FT+GS  +SW+ATLQS +ALSTTEAEYMA  E  KE
Sbjct: 1197 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239


>CAH66122.1 OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  461 bits (1185), Expect = e-147
 Identities = 240/403 (59%), Positives = 289/403 (71%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EEM+SL KN TWE+                   E        KYKARLVA+GYSQI G++
Sbjct: 840  EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVD 899

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR  LS+VA  DLEL+QLDVKT FLHGELEE IYM QPEGF    KE
Sbjct: 900  YNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKE 959

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
             +VC LKRSLYGLKQSPRQ           + F RS YD+CVY K ++  S +YLLLYVD
Sbjct: 960  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVD 1018

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++   EI K+K LL  EFDMKDLG AKKILGMEI RDRK G L L+Q  YIKKVL
Sbjct: 1019 DMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVL 1078

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + K VSTP+  HF+LSA Q P +D E + M+ VPYSSA+GS+MYAMVC+RPD++
Sbjct: 1079 QRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLS 1138

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            YA+S+VSRYM++PGK HW+A++WI RYL+GT+ +CL F        GYVDSDYA DLD+R
Sbjct: 1139 YAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR 1198

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FT+GS  +SW+ATLQS +ALSTTEAEYMA  E  KE
Sbjct: 1199 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1241


>AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  458 bits (1179), Expect = e-147
 Identities = 243/403 (60%), Positives = 296/403 (73%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            +EMESL KN +WEL                   EG       +YKARLVAKGYSQI GI+
Sbjct: 746  DEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 805

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR LLS+VA+ D EL+Q+DVKT FLHGELEE IYM+QPEGF    KE
Sbjct: 806  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 865

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N VC LK+SLYGLKQSPRQ             F RS+YD+CVY K +D  S +YLLLYVD
Sbjct: 866  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVD 924

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++  SEIAK+K+ L  EF+MKDLG AKKILGMEI R+R  G+L L+Q+ YI+KVL
Sbjct: 925  DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVL 984

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
            HRF+M D K VST L AHFRLS+   PQS  + + M+ VPYSSA+ S+MYAMVC+RPD++
Sbjct: 985  HRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLS 1044

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            +A+SVVSRYMA+PGK HW+AV+WI RYL+GTS+ CL F  +     GYVDSD+AGDLD+R
Sbjct: 1045 HALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDGLVGYVDSDFAGDLDRR 1104

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FTVG   +SWKA+LQ+T+ALSTTEAEYMA  E  KE
Sbjct: 1105 RSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKE 1147


>XP_015080794.1 PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  469 bits (1206), Expect = e-146
 Identities = 250/404 (61%), Positives = 305/404 (75%), Gaps = 17/404 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EEMESLH+N+TW L                   EG       ++KARLVAKG+SQ EGI+
Sbjct: 1399 EEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARFKARLVAKGFSQKEGID 1458

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIRVLL+LVA  DLELQQLDVKT FLHG+LEE IYM QPEGF  E KE
Sbjct: 1459 YNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLEETIYMDQPEGFLAEGKE 1518

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            +HVC LK+SLYGLKQSPRQ         T +GFSRS++D+CVY+K +  NS +YLLLYVD
Sbjct: 1519 DHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVD 1578

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA+ + +EI  +K LL  EFDMKDLG AKKILGMEI R+  +G + L+Q++YI+KVL
Sbjct: 1579 DMLIAANNITEINILKKLLSKEFDMKDLGVAKKILGMEISRE--NGVVHLSQKRYIRKVL 1636

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M   KPVSTPL +HF+LS LQ PQS +E + M+ VPY+SA+GSIMYAMVCTRPDIA
Sbjct: 1637 ERFNMDMSKPVSTPLASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCTRPDIA 1696

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVIT-TGYVDSDYAGDLDK 1034
             +VSVVS+YMA+PGK HW+AVKWILRYLKG  +  L F  ++ I+  GYVDSDYAGDLD+
Sbjct: 1697 QSVSVVSKYMANPGKRHWEAVKWILRYLKGAPDVGLTFRKSEGISILGYVDSDYAGDLDR 1756

Query: 1035 RRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RRS TGY+FT+  + +SWK+TLQS +ALSTTEAEYMAA E VKE
Sbjct: 1757 RRSTTGYIFTLVGSAVSWKSTLQSIVALSTTEAEYMAATEAVKE 1800


>ABA98804.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  459 bits (1181), Expect = e-146
 Identities = 240/403 (59%), Positives = 288/403 (71%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            EEM+SL KN TWE+                   EG       KYKARLVA+GYSQI G++
Sbjct: 838  EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVD 897

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR  LS+VA  DLEL+QLDVKT FLHGELEE IYM QPEGF    KE
Sbjct: 898  YNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKE 957

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
             +VC LKRSLYGLKQSPRQ           + F RS YD+CVY K ++  S +YLLLYVD
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVD 1016

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++   EI K+K LL  EFDMKDLG AKKIL MEI RDRK G L L+Q  YIKKVL
Sbjct: 1017 DMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVL 1076

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + K VSTP+  HF+LSA Q P +D E + M+ VPYSSA+GS+MYAMVC+RPD++
Sbjct: 1077 QRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLS 1136

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            YA+S+VSRYM++PGK HW+ V+WI RYL+GT+ +CL F        GYVDSDYA DLD+R
Sbjct: 1137 YAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRR 1196

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FT+GS  +SW+ATLQS +ALSTTEAEYMA  E  KE
Sbjct: 1197 RSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKE 1239


>KYP47640.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  452 bits (1162), Expect = e-146
 Identities = 244/406 (60%), Positives = 294/406 (72%), Gaps = 19/406 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG--DK----YKARLVAKGYSQIEGIE 167
            EEMESL +NQTW+L                   +G  DK    YKARLVAKGY+Q EGI+
Sbjct: 600  EEMESLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGID 659

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGFE--DKE 341
               +  P+++HSSIRVLL+LVA  D+EL Q+DVKT FLHG+LEE+IYM QPEGF+   KE
Sbjct: 660  YNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQPEGFKVAGKE 719

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N  C L++SLYGLKQSPRQ             ++RS YD CVY + L D SF+YLLLYVD
Sbjct: 720  NMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHDGSFIYLLLYVD 779

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIAS++  EI K+K+ L GEF+MKDLGEAKKILGMEI RDRK GRL LTQ++Y+K+VL
Sbjct: 780  DMLIASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVL 839

Query: 678  HRFHMLD-VKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDI 854
             RF + D  KPVSTPL +HF+LSA  SP+   E+  M+ VPY+SA+GS+MYAMVCTRPDI
Sbjct: 840  KRFGISDESKPVSTPLASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDI 899

Query: 855  AYAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQ--VITTGYVDSDYAGDL 1028
            +YAV VVSRYM +PGK HWQAVKWILRY+  T +  LVF   Q      GY DS+YAGDL
Sbjct: 900  SYAVGVVSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQEQDGQNVVGYCDSNYAGDL 959

Query: 1029 DKRRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            D RRS TGY+FT+    + W++TLQST+ALSTTEAEYMA  E VKE
Sbjct: 960  DNRRSTTGYVFTLAKAPVCWRSTLQSTVALSTTEAEYMALTEAVKE 1005


>AAT44282.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  456 bits (1174), Expect = e-146
 Identities = 239/403 (59%), Positives = 295/403 (73%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            +EMESL KN TWEL                   EG       +YKARLVAKGYSQI GI+
Sbjct: 809  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 868

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR LL +VA+ D EL+Q++VKT FLHGELEE IYM+QPEGF    KE
Sbjct: 869  FNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKE 928

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N VC LK+SLYGLKQSPRQ             F  S+YD+CVY K +D  S +YLLLYVD
Sbjct: 929  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVD-GSVIYLLLYVD 987

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++  SEI K+K+ L  EF+MKDLG AKKILGMEI R+R  G+L L+Q+ YI+KVL
Sbjct: 988  DMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVL 1047

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M D KPVSTPL AHFRLS+   P SD + + M+ VPYSSA+GS+MYAMVC RPD++
Sbjct: 1048 RRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLS 1107

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            +A+SVV+RYMA+PGK HW+AV+WI RYL+GTS+ CL F  ++    GYVDSD+AGDLD+R
Sbjct: 1108 HALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERSRDGLVGYVDSDFAGDLDRR 1167

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RS+TGY+FT+G   +SWKA+LQ+T+ALSTTEAEYMA  E  KE
Sbjct: 1168 RSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKE 1210


>AAR87163.1 putative polyprotein [Oryza sativa Japonica Group] AAU89150.1
            integrase core domain containing protein [Oryza sativa
            Japonica Group] ABF98081.1 retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  454 bits (1168), Expect = e-144
 Identities = 235/404 (58%), Positives = 290/404 (71%), Gaps = 16/404 (3%)
 Frame = +3

Query: 3    KEEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGI 164
            +EEM+SL KN TWEL                   EG       ++K RLVAKG+SQI G+
Sbjct: 826  QEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGV 885

Query: 165  EVPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDK 338
            +   +  P+++HSSIR   S+V + DLEL+QLDVKTTFLHGELEE+IYM QPEGF    K
Sbjct: 886  DYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGK 945

Query: 339  ENHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYV 494
            E++VC LKRSLYGLKQSPRQ           +GF RS +D+CVY K ++  S +YLLLYV
Sbjct: 946  EDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYV 1004

Query: 495  DDMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKV 674
            DDMLIA++   +I  +K  L  EFDMKDLG AKKILGMEI RDR  G L L+Q+ YIKKV
Sbjct: 1005 DDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKV 1064

Query: 675  LHRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDI 854
            L RF+M D KPVSTP+  HF+LSALQ   +DE+ + M+ VPYSSA+GS+MYAMVC+ PD+
Sbjct: 1065 LQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDL 1124

Query: 855  AYAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDK 1034
            ++A+S+VSRYMA+PGK HW+AV+WI RYL+GT++ CL F        GYVDSD+A DLDK
Sbjct: 1125 SHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDKGLVGYVDSDFAADLDK 1184

Query: 1035 RRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RRSLTGY+FT+GS  +SWKATLQ  +A STTEAEYMA  E  KE
Sbjct: 1185 RRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKE 1228


>AAT44257.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  451 bits (1161), Expect = e-144
 Identities = 237/403 (58%), Positives = 294/403 (72%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            +EMESL KN TWEL                   +G       +YKARLVAKGYSQI GI+
Sbjct: 716  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGID 775

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR LLS+VA+ D EL+Q+DVKT FLHGELEE IYM+QPEGF    KE
Sbjct: 776  FNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 835

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N V  LK+SLYGLKQSPRQ             F RS+YD+CVY K +D +S +YLLLYVD
Sbjct: 836  NLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVDGSS-IYLLLYVD 894

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++  SEI K+K+ L  EF+MKDLG AKKILGMEI R+R  G+L L+Q+ YI+KVL
Sbjct: 895  DMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVL 954

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M D KPVSTPL AHFRLS+   PQSD + + M+ VPY S +GS+MYAMVC+R D++
Sbjct: 955  RRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLS 1014

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            +A+SVVSRYMA+PGK HW+ V+WI +YL+GTS+ CL F  ++    GYVDSD+AGDLD+R
Sbjct: 1015 HALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRR 1074

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSLTGY+FT+G   +SWKA+LQ+T+ALSTTE EYMA  E  KE
Sbjct: 1075 RSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKE 1117


>AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] ABA91548.1 retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2340

 Score =  459 bits (1181), Expect = e-142
 Identities = 241/403 (59%), Positives = 296/403 (73%), Gaps = 16/403 (3%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGIE 167
            +EMESL KN TWEL                   EG       +YKARL+AKGYSQI GI+
Sbjct: 1044 DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGID 1103

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P+++HSSIR LLS+VA+ D EL+Q+DVKT FLHGELEE IYM+QP+GF    KE
Sbjct: 1104 FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKE 1163

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N VC LK+SLYGLKQSPRQ             F RS+YD+CVY K +D  S +YLLLYVD
Sbjct: 1164 NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVD 1222

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA++  SEIAK+K+ L  EF+MKDLG AKKILGMEI R R   +L L+Q+ YI+KVL
Sbjct: 1223 DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVL 1282

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M D KPVSTPL AHFRLS+   PQSD + + M+ VPYSSA+GS+MYAMVC+RPD++
Sbjct: 1283 RRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLS 1342

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKR 1037
            +A+SVVSRYMA+PGK HW+AV+WI RYL+GTS+ CL F  ++    GYVDSD+AGDLD+ 
Sbjct: 1343 HALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRG 1402

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RSL GY+FT+G   +SWKA+LQ+T+ALSTTEAEYMA  E  KE
Sbjct: 1403 RSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKE 1445


>KYP68590.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 523

 Score =  426 bits (1094), Expect = e-142
 Identities = 222/402 (55%), Positives = 283/402 (70%), Gaps = 14/402 (3%)
 Frame = +3

Query: 3    KEEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXE----GDKYKARLVAKGYSQIEGIEV 170
            K+EM+SL  NQTWEL                   E      +YKARLV KG+ Q EG++ 
Sbjct: 29   KDEMKSLISNQTWELVELPRDKKALHNKWVYRVKEEHDGSKRYKARLVVKGFQQKEGVDY 88

Query: 171  PFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGFEDK--EN 344
              +  P+++ ++IR +LS+VA E+L L+QLDVKT FLHG+L+E+IYM QPEGF +K  EN
Sbjct: 89   TEIYSPVVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKGKEN 148

Query: 345  HVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVDD 500
             VC LK+SLYGLKQ+PRQ            GF + + D C Y+K    +S++ LLLYVDD
Sbjct: 149  MVCRLKKSLYGLKQAPRQWYKKFDGFMHKEGFHKCNADHCCYFKRYK-SSYIILLLYVDD 207

Query: 501  MLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVLH 680
            ML+A     EI  +K  L  EFDMKDLG AKKILGM+I RD++ G L L+Q +YI +VL 
Sbjct: 208  MLVAGLDMDEIRSLKQRLSREFDMKDLGPAKKILGMQITRDKQRGILQLSQAEYINRVLQ 267

Query: 681  RFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIAY 860
            RF+M D KPVSTPL +HFRLS  QSPQ++EE   MA VPY+SAIGS+MYAMVCTRPDI +
Sbjct: 268  RFNMGDAKPVSTPLASHFRLSKDQSPQTEEERYFMAKVPYASAIGSLMYAMVCTRPDIGH 327

Query: 861  AVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDKRR 1040
            AV VVSR+M++PGKAHW+AVKWILRYL+GT+  CL F   ++   GYVD+DY G++D RR
Sbjct: 328  AVGVVSRFMSNPGKAHWEAVKWILRYLRGTTERCLHFGKGKIKVQGYVDADYGGEVDHRR 387

Query: 1041 SLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            S TGY+FTVG+T +SW + +Q  +ALSTTEAEY+A  E  KE
Sbjct: 388  STTGYIFTVGTTAVSWMSQVQKIVALSTTEAEYVAVTEASKE 429


>AAL91607.1 Putative pol polyprotein [Oryza sativa Japonica Group] AAL75759.1
            Putative pol polyprotein [Oryza sativa Japonica Group]
            AAP51772.1 retrotransposon protein, putative, Ty1-copia
            subclass [Oryza sativa Japonica Group]
          Length = 1005

 Score =  437 bits (1123), Expect = e-140
 Identities = 229/404 (56%), Positives = 284/404 (70%), Gaps = 16/404 (3%)
 Frame = +3

Query: 3    KEEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGI 164
            +EEM+SL KN TWEL                   EG       ++KA+LVAKG+SQI G+
Sbjct: 510  QEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGV 569

Query: 165  EVPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDK 338
            +   +  P+++HSSIR   S+VA+ DLEL+QLDVKT FLHGELEE+IYM QPEGF    K
Sbjct: 570  DYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGK 629

Query: 339  ENHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYV 494
            E +VC LKRS YGLKQSPRQ           +GF RS +D+CVY K ++  S +YLL YV
Sbjct: 630  EGYVCKLKRSFYGLKQSPRQWYKRFDLFMLSHGFKRSEFDSCVYIKFVN-GSPIYLL-YV 687

Query: 495  DDMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKV 674
            DDMLIA++   +I  +K  L  EFDMKDLG AKKILGMEI RDR  G L L+Q+ YIK V
Sbjct: 688  DDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKNV 747

Query: 675  LHRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDI 854
            L RF+M D K VS P+  HF+LS LQ   +DE+ + M+ VPYSSA+GS+MYAMVC+RPD+
Sbjct: 748  LQRFNMHDAKLVSIPIAPHFKLSVLQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDL 807

Query: 855  AYAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDK 1034
            ++A+S+VSRYMA+PGK HW+AV+WI RYL+GT++ CL F        GYVDSD+A DLDK
Sbjct: 808  SHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGLVGYVDSDFAADLDK 867

Query: 1035 RRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RRSLTGY+FT+ S  +SWKATLQ  +A STTEAEYMA  E  KE
Sbjct: 868  RRSLTGYVFTISSCAMSWKATLQPVVAQSTTEAEYMAIAEACKE 911


>KYP69994.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 510

 Score =  418 bits (1074), Expect = e-139
 Identities = 219/403 (54%), Positives = 278/403 (68%), Gaps = 15/403 (3%)
 Frame = +3

Query: 3    KEEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEGD------KYKARLVAKGYSQIEGI 164
            KEEMESL KNQTW+L                    G       +YKARLVAKG+SQ EG+
Sbjct: 14   KEEMESLQKNQTWKLVKLPKGRHVVGCKWIFKRKPGIPGVEPLRYKARLVAKGFSQKEGV 73

Query: 165  EVPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGFEDKEN 344
            +   +  P++ H+SIRVLL+LVA +DLEL+QLDVKT FLHG LEE I M+QPEGF     
Sbjct: 74   DFNEIFSPVVRHTSIRVLLALVACQDLELEQLDVKTAFLHGRLEEDILMKQPEGFV---K 130

Query: 345  HVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVDD 500
             VC L++SLYGLKQSPRQ          + GF++S YD CVY+K ++D S +YLLLYVDD
Sbjct: 131  IVCQLQKSLYGLKQSPRQWYKRFDTFMINKGFNKSPYDCCVYHKKVEDGSMIYLLLYVDD 190

Query: 501  MLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVLH 680
            +LIA+++ SEI  +K+LL GEFDMK+LG AK+ILGMEI RDR   +L   Q+ YI+K+LH
Sbjct: 191  ILIAAKNKSEIQNLKALLSGEFDMKNLGAAKRILGMEIYRDRSQKKLFHCQKDYIQKILH 250

Query: 681  RFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIAY 860
            R  M + KP+STP++   +L  +  P    E+     VPY+S +G +MY MVCTRP++AY
Sbjct: 251  RLGMHNAKPLSTPMSVKEKLKNVPHPICQTEQNNALQVPYASVVGRLMYTMVCTRPNLAY 310

Query: 861  AVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVF-HGAQVITTGYVDSDYAGDLDKR 1037
            AVSVVSRY+  P K HWQA+K I RYL+GTS+  L++        TGY D+DYA DLD R
Sbjct: 311  AVSVVSRYLNQPQKEHWQAIKRIFRYLRGTSDIGLIYGTNTNCCLTGYSDADYAADLDGR 370

Query: 1038 RSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            +S+TGY FT+GS  +SWKATLQS++ALSTTEAEYMA  E  KE
Sbjct: 371  KSITGYAFTLGSCLVSWKATLQSSVALSTTEAEYMALTEAAKE 413


>AAL31093.1 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] AAN04164.1 Putative retrotransposon protein [Oryza
            sativa Japonica Group] AAP53029.1 retrotransposon
            protein, putative, Ty1-copia subclass, expressed [Oryza
            sativa Japonica Group]
          Length = 1229

 Score =  438 bits (1127), Expect = e-139
 Identities = 228/404 (56%), Positives = 284/404 (70%), Gaps = 16/404 (3%)
 Frame = +3

Query: 3    KEEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEG------DKYKARLVAKGYSQIEGI 164
            +EEM+SL KN TWEL                   EG       ++ ARLVAKG+SQI G+
Sbjct: 772  QEEMQSLEKNGTWELVHLLKQKKPVHCKWIFKRKEGLSPSGPPRFNARLVAKGFSQIAGV 831

Query: 165  EVPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDK 338
            +   +  P+++HSSIR    +VA+ DLEL+QLDVKT FLHGELEE+IYM QPEGF    K
Sbjct: 832  DYNDVFSPVVKHSSIRTFFCIVAMHDLELEQLDVKTIFLHGELEEEIYMDQPEGFIVPGK 891

Query: 339  ENHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYV 494
            E+ VC LKRSLYGLKQSPRQ           +GF RS +D+CVY K ++  S +YLLLYV
Sbjct: 892  EDDVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSHIYLLLYV 950

Query: 495  DDMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKV 674
            DDMLIA++   +I  +K  L  EFDMKDL  +KKILGMEI RD   G L L+Q+ YIKKV
Sbjct: 951  DDMLIAAKSKEQITTLKKQLSSEFDMKDLVASKKILGMEITRDINSGLLFLSQQSYIKKV 1010

Query: 675  LHRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDI 854
            L RF++ D KPVSTP+  HF+LSALQ   +DE+ + M+ VPYSS +GS+MYAMVC+RP +
Sbjct: 1011 LQRFNIHDAKPVSTPIAPHFKLSALQCTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVL 1070

Query: 855  AYAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITTGYVDSDYAGDLDK 1034
            ++A+S+VSRYMA+PGK HW+AV+WI RYL+GT++ CL F        GYVDSD+A DLDK
Sbjct: 1071 SHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKGLVGYVDSDFAADLDK 1130

Query: 1035 RRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            RRSLTGY+FT+GS  +SWKATLQ  +A ST EAEYMA  E  KE
Sbjct: 1131 RRSLTGYVFTIGSCAVSWKATLQPVVAQSTAEAEYMAIAEACKE 1174


>ACS74199.1 putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  435 bits (1119), Expect = e-137
 Identities = 227/405 (56%), Positives = 279/405 (68%), Gaps = 18/405 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXEGDK------YKARLVAKGYSQIEGIE 167
            EEMESLHKN  WEL                   EG        YKARLVAKGYSQ EG++
Sbjct: 803  EEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVD 862

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGFED--KE 341
               +  P+++H+SIR+LLS+ A  D+E++Q+DVKT FLHG+LEE IYM QPEGF +  KE
Sbjct: 863  YDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKE 922

Query: 342  NHVCLLKRSLYGLKQSPRQ--------RTHNGFSRSSYDACVYYKGLDDNSFVYLLLYVD 497
            N VC LK+SLYGLKQSPRQ            G++R  YD CVYY   +D   + LLLYVD
Sbjct: 923  NLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVD 982

Query: 498  DMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKVL 677
            DMLIA R   +I K+K  LG EFDMKDLG A+KILG+EI+RDR  G++ L+QEKYI K+L
Sbjct: 983  DMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKIL 1042

Query: 678  HRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDIA 857
             RF+M + K VS PL AHFRLSA Q P   +E   M +VPY+SA+G +MYAM+CTRPD+A
Sbjct: 1043 ERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLA 1102

Query: 858  YAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQ--VITTGYVDSDYAGDLD 1031
             A+SVVS+YM++PGK HW+AVKWI +YLK T    ++F   Q      G+VDSD+AGDLD
Sbjct: 1103 QAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLD 1162

Query: 1032 KRRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            +RRS  GY+FT G   +SWKATLQ+  ALSTTEAEYMA  E  KE
Sbjct: 1163 RRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKE 1207


>CAN81634.1 hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  414 bits (1065), Expect = e-137
 Identities = 216/406 (53%), Positives = 283/406 (69%), Gaps = 19/406 (4%)
 Frame = +3

Query: 6    EEMESLHKNQTWELXXXXXXXXXXXXXXXXXXXE------GDKYKARLVAKGYSQIEGIE 167
            EE++ LHKNQTW+L                   E      G+K+KARLVAKGYSQ +G++
Sbjct: 182  EEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEKFKARLVAKGYSQRKGVD 241

Query: 168  VPFLLLPIIEHSSIRVLLSLVAIEDLELQQLDVKTTFLHGELEEKIYMQQPEGF--EDKE 341
               +  P++ H+SIR +L LVA  D++L+Q+DV+TTFLHG+LEE +YM QPEGF    +E
Sbjct: 242  YDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQPEGFIQPGQE 301

Query: 342  NHVCLLKRSLYGLKQSPRQR--------THNGFSRSSYDACVYYKGLDDNS-FVYLLLYV 494
            + VC L++SLYGLKQSPRQ            G+ R  YD  VY K LDD+S F++LLLYV
Sbjct: 302  HLVCKLRKSLYGLKQSPRQWYKCFDSYIIRIGYKRCEYDCFVYVKSLDDDSSFIFLLLYV 361

Query: 495  DDMLIASRHASEIAKVKSLLGGEFDMKDLGEAKKILGMEIQRDRKDGRLILTQEKYIKKV 674
            DDMLIA++   E+ K+KSLL  EFDMK+L  AKKI+GMEI RDR   RL L+Q  Y+K+V
Sbjct: 362  DDMLIAAKSMVEVNKLKSLLSKEFDMKELDAAKKIIGMEIHRDRASRRLWLSQYSYVKRV 421

Query: 675  LHRFHMLDVKPVSTPLTAHFRLSALQSPQSDEEEKEMAHVPYSSAIGSIMYAMVCTRPDI 854
              RF+M D KPVSTPL  HFRLS  Q P++++E K+M+ VPY+SA+G  MYAMVC RPD+
Sbjct: 422  FERFNMDDAKPVSTPLANHFRLSTNQCPKTBDEVKDMSKVPYASAVGCFMYAMVCIRPDL 481

Query: 855  AYAVSVVSRYMAHPGKAHWQAVKWILRYLKGTSNTCLVFHGAQVITT--GYVDSDYAGDL 1028
            A+ VSVVS+++++PG+ HW A+KWI RYL+G +   ++F   Q   +  GYVD+DYAGDL
Sbjct: 482  AHTVSVVSKFLSNPGRMHWDAIKWIFRYLRGXTYYGIMFSKQQSDPSIRGYVDADYAGDL 541

Query: 1029 DKRRSLTGYMFTVGSTTISWKATLQSTIALSTTEAEYMAAKEVVKE 1166
            D RRS TGY+FT+G   I WK+ +QS +AL TTE+EYMA  E  KE
Sbjct: 542  DDRRSTTGYVFTLGGGPICWKSMVQSLVALFTTESEYMAIAEATKE 587