BLASTX nr result

ID: Alisma22_contig00003212 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Alisma22_contig00003212
         (1814 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_010266387.1 PREDICTED: RNA polymerase sigma factor sigA-like ...   520   e-177
XP_010275189.1 PREDICTED: RNA polymerase sigma factor sigA-like ...   519   e-176
XP_008808794.1 PREDICTED: RNA polymerase sigma factor sigA [Phoe...   504   e-171
XP_018828144.1 PREDICTED: RNA polymerase sigma factor sigA-like ...   503   e-170
AKC88633.1 sigma factor [Melianthus villosus]                         501   e-169
XP_002325882.1 RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Po...   499   e-168
XP_003539986.1 PREDICTED: RNA polymerase sigma factor sigA [Glyc...   498   e-168
XP_006878659.1 PREDICTED: RNA polymerase sigma factor sigA [Ambo...   497   e-168
XP_018842724.1 PREDICTED: RNA polymerase sigma factor sigA-like ...   498   e-168
XP_011012457.1 PREDICTED: RNA polymerase sigma factor sigA [Popu...   497   e-168
OAY70832.1 RNA polymerase sigma factor sigA [Ananas comosus]          497   e-168
XP_006484698.1 PREDICTED: RNA polymerase sigma factor sigA [Citr...   496   e-167
XP_020114871.1 RNA polymerase sigma factor sigA isoform X1 [Anan...   495   e-167
KDO48032.1 hypothetical protein CISIN_1g010521mg [Citrus sinensi...   495   e-167
XP_006437403.1 hypothetical protein CICLE_v10031289mg [Citrus cl...   494   e-167
XP_007029766.2 PREDICTED: RNA polymerase sigma factor sigA isofo...   494   e-167
XP_016902935.1 PREDICTED: RNA polymerase sigma factor sigA [Cucu...   494   e-167
EOY10268.1 Sigma factor A isoform 1 [Theobroma cacao]                 493   e-166
OMO87271.1 RNA polymerase sigma-70 [Corchorus capsularis]             493   e-166
XP_008234513.1 PREDICTED: RNA polymerase sigma factor sigA [Prun...   493   e-166

>XP_010266387.1 PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 506

 Score =  520 bits (1338), Expect = e-177
 Identities = 287/495 (57%), Positives = 355/495 (71%), Gaps = 3/495 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                 SV DHG AQ      + VI+A+K++NF  
Sbjct: 1    MATAAVIGLSAGKRLLNSTFYYSDVTDRLL-SVYDHGLAQYQATSAKNVIIARKSSNFGD 59

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                       Q+IRA+KEH               TPS A  W  S  + +E +N D++ 
Sbjct: 60   SFPSNQHI---QSIRALKEHVNTLS----------TPSTADVWLQSSGLLEE-ENTDLDY 105

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S++A++LLQK +LEKQWNLSF+Q+      GE   KK  V RSGVSAR+RR  TRR CL 
Sbjct: 106  SVDALLLLQKFLLEKQWNLSFEQTITDGAPGEETHKKIQVTRSGVSARQRRTSTRRTCLS 165

Query: 876  GGNSGDTLLSTREERG--VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVE 1049
              +S     + R++ G  VS +LL + + GY++G +  + L+HA+VVQLSKKI+AGLS+E
Sbjct: 166  PKHS-IMQPTKRKQLGSMVSPELLKSHY-GYVKGVISEELLTHAEVVQLSKKIKAGLSLE 223

Query: 1050 EHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYD 1229
            EHK RLK +LGC+PSD+QLA+SLRIS  ELQSK++ECSLAREKL MSNVRLVM+IAQKYD
Sbjct: 224  EHKLRLKERLGCDPSDEQLASSLRISRAELQSKVIECSLAREKLTMSNVRLVMSIAQKYD 283

Query: 1230 NMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSH 1409
            NMGA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H
Sbjct: 284  NMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTH 343

Query: 1410 IHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLN 1589
            +HERL  IR AK +L E GITP+I +IAE LNMSEKK+RNA EA  +VFSLDR+AFPSLN
Sbjct: 344  LHERLCLIRNAKIRLAEKGITPSIDRIAECLNMSEKKVRNATEAVNKVFSLDREAFPSLN 403

Query: 1590 GLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQ 1769
            GLP ET HSYIAD RLENNPWHG +EWSLKDEVN LL++TL ERE++IIRLY+GL+ EC 
Sbjct: 404  GLPRETLHSYIADNRLENNPWHGVDEWSLKDEVNNLLSTTLEERERDIIRLYYGLDKECL 463

Query: 1770 SWEEISRQIGLSRER 1814
            +WE+ISR+IGLSRER
Sbjct: 464  TWEDISRRIGLSRER 478


>XP_010275189.1 PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
            XP_010275190.1 PREDICTED: RNA polymerase sigma factor
            sigA-like [Nelumbo nucifera] XP_010275191.1 PREDICTED:
            RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 516

 Score =  519 bits (1337), Expect = e-176
 Identities = 281/499 (56%), Positives = 356/499 (71%), Gaps = 7/499 (1%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL +G+R                 SV DHG AQ  T  ++ V++AKK++NF  
Sbjct: 11   MATAAVIGLNAGKRLLSSTFYYSDVTDRLA-SVYDHGLAQYQTAPSKSVVIAKKSSNFDH 69

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQ--NPDM 692
                       Q+I+A+KEH              ++ S    W  +    D L+  N D+
Sbjct: 70   DFASNR---HNQSIKALKEHLNT-----------FSTSTEDMWLQT---SDHLEEGNSDL 112

Query: 693  ESSLEAIILLQKAMLEKQWNLSFDQS-QETIHTGESIKKTGVIRSGVSARKRRNLTRRKC 869
            + SLEA++LLQK++LEKQWNLSF++S ++     E+ KK  V RSGVSAR+RR  TR+K 
Sbjct: 113  DYSLEALLLLQKSLLEKQWNLSFEKSMRKGAPKEETRKKIQVTRSGVSARQRRTNTRKKY 172

Query: 870  LPGGNSGDTLLSTREERG----VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAG 1037
            L   N+  +++ T   R     VS +LL ++ KGY++G +  + L+H++VVQLSKKI+ G
Sbjct: 173  L---NTDSSMMQTTRRRHLGSMVSEELLQSRLKGYVKGVISEELLTHSEVVQLSKKIKVG 229

Query: 1038 LSVEEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIA 1217
            +S+EEHK RLK +LGCEPSD+QLA SLRIS  ELQ K++ECSLAREK+AMSNVRLVM+IA
Sbjct: 230  ISLEEHKMRLKERLGCEPSDEQLATSLRISRAELQMKMIECSLAREKIAMSNVRLVMSIA 289

Query: 1218 QKYDNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLR 1397
             KYDNMGA++AD             EKFDSSKG +ISTYVYWWIRQGVSRALV+NSRTLR
Sbjct: 290  HKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLR 349

Query: 1398 LPSHIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAF 1577
            LPSH+HERLS IR AK +LEE GITP+I +IAE LN+S+KK+RNA EA  +V SLDR+AF
Sbjct: 350  LPSHMHERLSLIRNAKIRLEEKGITPSIDRIAECLNISQKKVRNATEAVNKVISLDREAF 409

Query: 1578 PSLNGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLE 1757
            PSLNGLPGET HSYIAD R+ENNPWHG +EWSLKDEVN LLN+TL ERE++IIRLY+GL+
Sbjct: 410  PSLNGLPGETLHSYIADNRIENNPWHGVDEWSLKDEVNNLLNTTLRERERDIIRLYYGLD 469

Query: 1758 SECQSWEEISRQIGLSRER 1814
             EC +WE+ISR+IGLSRER
Sbjct: 470  EECLTWEDISRRIGLSRER 488


>XP_008808794.1 PREDICTED: RNA polymerase sigma factor sigA [Phoenix dactylifera]
            XP_008808795.1 PREDICTED: RNA polymerase sigma factor
            sigA [Phoenix dactylifera] XP_008808796.1 PREDICTED: RNA
            polymerase sigma factor sigA [Phoenix dactylifera]
            XP_008808797.1 PREDICTED: RNA polymerase sigma factor
            sigA [Phoenix dactylifera]
          Length = 508

 Score =  504 bits (1298), Expect = e-171
 Identities = 282/503 (56%), Positives = 343/503 (68%), Gaps = 11/503 (2%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                 +V DHGS Q  T  T+  I AK+++NF  
Sbjct: 1    MATAAVIGLSTGKRLLSTSFYPADLAEKLF-AVPDHGSMQFSTSSTKNTIAAKRSSNFGT 59

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQN--PDM 692
                       QAI+A+KEH                 S A  WF  P   D L++   D+
Sbjct: 60   NIPSNR---HSQAIKALKEHVDTAAL-----------STADAWFRRP---DPLEDGESDL 102

Query: 693  ESSLEAIILLQKAMLEKQWNLSFDQSQETIHTGESIKKTGVIRSGVSARKRRNLTRRKCL 872
            E SLE +ILLQK+MLEKQW L F+Q +      ES KKT VIRSG+SARKRR +TRR+C 
Sbjct: 103  EYSLEVLILLQKSMLEKQWKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTVTRRRCF 162

Query: 873  P---------GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKK 1025
                      GG  G  L ST     VS +LL  + +GY+RG V  + L+HA+VV LS+K
Sbjct: 163  NRSAYMEPFNGGEEGKELRST-----VSPELLQTRVRGYVRGTVSENLLTHAEVVHLSRK 217

Query: 1026 IRAGLSVEEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLV 1205
            IRAGLS+EE + +LK KLG EPSD+QLA+ LR+S  EL SKL ECSLAREKLAMSNVRLV
Sbjct: 218  IRAGLSLEEKRMKLKEKLGFEPSDKQLASFLRMSHAELHSKLTECSLAREKLAMSNVRLV 277

Query: 1206 MAIAQKYDNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNS 1385
            M+IAQKYDN+GA++AD             EKFDSSKG +ISTYVYWWIRQGVSRALV+NS
Sbjct: 278  MSIAQKYDNLGAEMADLIQGGLIGLLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENS 337

Query: 1386 RTLRLPSHIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLD 1565
            RTLRLPSH+HERLS IR AK +LE+ G+ P+I  IAE LNMS KK++NA EA ++VFSLD
Sbjct: 338  RTLRLPSHLHERLSLIRNAKIRLEDKGVMPSIDNIAESLNMSPKKVKNATEAVSKVFSLD 397

Query: 1566 RDAFPSLNGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLY 1745
            R+AFPSLNGLPGET HSYIAD  L N PWHGFE+WSLKDEVN LL++TL +RE+ IIRLY
Sbjct: 398  REAFPSLNGLPGETLHSYIADKNLANIPWHGFEDWSLKDEVNKLLHATLSKRERAIIRLY 457

Query: 1746 HGLESECQSWEEISRQIGLSRER 1814
            +G+ +E  +WE+ISRQ GLSRER
Sbjct: 458  YGIGNETHTWEDISRQFGLSRER 480


>XP_018828144.1 PREDICTED: RNA polymerase sigma factor sigA-like [Juglans regia]
            XP_018828145.1 PREDICTED: RNA polymerase sigma factor
            sigA-like [Juglans regia]
          Length = 509

 Score =  503 bits (1295), Expect = e-170
 Identities = 279/497 (56%), Positives = 350/497 (70%), Gaps = 5/497 (1%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MAA AV+GL+SG+R                ++  DH  A      ++KVI AKK+ANF  
Sbjct: 2    MAAAAVIGLSSGKRLLSCSYYYSDLAEKIPYAN-DHAGAHYQITSSKKVISAKKSANFTP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q+I+AVKEH               +PS A+ WF      +E ++ D+  
Sbjct: 61   GFQSAIQ--QTQSIKAVKEHVDIVS----------SPSTAEPWFQRSNELEE-ESSDLHY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIH-TGESIKKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+    T   TG++ +K  V  SGVSAR+RR  TR K L 
Sbjct: 108  SMEALLLLQKSMLEKQWNLSFEPKVLTDSPTGKNHRKIPVTCSGVSARQRRVNTRNKIL- 166

Query: 876  GGNSGDTLL--STREERG--VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLS 1043
              N    L+  S+ ++ G  +S +LL +  KGY++G V  + L+HADVV LSKKI AGLS
Sbjct: 167  --NKNGYLMQPSSGKQLGSMISPELLQSHSKGYVKGVVSEELLTHADVVCLSKKISAGLS 224

Query: 1044 VEEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQK 1223
            +EEHK RLK +LGCEPSD QLA SLRI   +L+SK +ECSLAREKLAMSNVRLVM+IAQ+
Sbjct: 225  LEEHKLRLKERLGCEPSDDQLATSLRIPLAQLRSKFIECSLAREKLAMSNVRLVMSIAQR 284

Query: 1224 YDNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLP 1403
            Y+NMGA+++D             EKFDSSKG RISTYVYWWIRQGVSR LV+NSRTLRLP
Sbjct: 285  YENMGAEMSDLVQGGLIGLLRGIEKFDSSKGCRISTYVYWWIRQGVSRTLVENSRTLRLP 344

Query: 1404 SHIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPS 1583
            +H+HERL  IR AK +L+E GI P+I +IAE LNMS+KK+RNA +A ++V SLDR+AFPS
Sbjct: 345  THLHERLGLIRNAKVRLQEKGINPSIDRIAECLNMSKKKVRNATQAMSKVISLDREAFPS 404

Query: 1584 LNGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESE 1763
            LNGLPGET HSYIAD R ENNPWHG +EW+LKDEVN L+N TLGERE+EIIRLYHGL++E
Sbjct: 405  LNGLPGETHHSYIADNRPENNPWHGVDEWALKDEVNKLINMTLGEREREIIRLYHGLDNE 464

Query: 1764 CQSWEEISRQIGLSRER 1814
            C +WE+IS++IGLSRER
Sbjct: 465  CLTWEDISKRIGLSRER 481


>AKC88633.1 sigma factor [Melianthus villosus]
          Length = 506

 Score =  501 bits (1289), Expect = e-169
 Identities = 275/494 (55%), Positives = 347/494 (70%), Gaps = 2/494 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                ++  DHG        T+ V++AKK++N   
Sbjct: 1    MATAAVIGLSAGKRLLSSSLYYSDYAEKLSYAN-DHGHYNATP--TKTVVIAKKSSN--C 55

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q+I+A+KEH                PS A+ WF      DE QN D+E 
Sbjct: 56   SPRFPSSNRKTQSIKALKEHVDDISG----------PSTAESWFQRSNDVDE-QNFDIEY 104

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGE-SIKKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSFD++  T    E + K+  V  SGVSAR+RR   +RK L 
Sbjct: 105  SVEALLLLQKSMLEKQWNLSFDKTMLTDLVKEKTCKRIPVTCSGVSARQRRMSNKRKILS 164

Query: 876  GGNSG-DTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEE 1052
              +S   T    R    +  +L+ N+FKGY++G V  + LSHA+VV LSKKI+ GLS+EE
Sbjct: 165  ENSSMMQTSRCNRLRTIIGPELMQNRFKGYVKGVVSEELLSHAEVVHLSKKIKCGLSLEE 224

Query: 1053 HKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDN 1232
            HK RLK +LGCEPSD+QLA SLRIS  EL+SK +E  LAREKLAMSNVRLVM+IAQ+YDN
Sbjct: 225  HKLRLKKRLGCEPSDEQLATSLRISRAELRSKWIESGLAREKLAMSNVRLVMSIAQRYDN 284

Query: 1233 MGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHI 1412
            MGA+++D             EKFDS+KGF+ISTYVYWWIRQGVSRAL++NSRTLRLP+H+
Sbjct: 285  MGAEMSDLVQGGLIGLLRGIEKFDSAKGFKISTYVYWWIRQGVSRALIENSRTLRLPTHL 344

Query: 1413 HERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNG 1592
            HERL  IR AK +LEE GITP+I ++AE LNMS+KKIRNA EA ++VFSLDR+AFPSLNG
Sbjct: 345  HERLGLIRNAKIRLEEKGITPSIERLAECLNMSKKKIRNATEAISKVFSLDREAFPSLNG 404

Query: 1593 LPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQS 1772
            LPGET HSYIAD  L+NNPWHG +EW+LKDEV  L+  TLGERE+EIIRLYHGL++EC +
Sbjct: 405  LPGETHHSYIADNCLDNNPWHGVDEWALKDEVKKLIEMTLGEREREIIRLYHGLDNECLT 464

Query: 1773 WEEISRQIGLSRER 1814
            WE+IS++IGLSRER
Sbjct: 465  WEDISKRIGLSRER 478


>XP_002325882.1 RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            EEF00264.1 RNA POLYMERASE SIGMA SUBUNIT 1 family protein
            [Populus trichocarpa]
          Length = 509

 Score =  499 bits (1284), Expect = e-168
 Identities = 275/494 (55%), Positives = 344/494 (69%), Gaps = 2/494 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL+SG+R                + V DHG    PT  T+ VIVAKK++N+  
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSN-VNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                        +I+A+KEH             F T       FD      E ++  ++ 
Sbjct: 61   SFPSSNR--NSHSIKALKEHVDTASASSNVATWFKT-------FDD----FEEESSALDY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGE-SIKKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+++  +  T + + KK  V  SGVSAR+RR   RRK   
Sbjct: 108  SVEALLLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQN 167

Query: 876  GGNSGDTLLSTREERGVSH-DLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEE 1052
                       +  R VS  DLL N+ KGY++G V  + L H +VV+LS+ IRAGLS E+
Sbjct: 168  QSKFMSQSSDFKFLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFED 227

Query: 1053 HKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDN 1232
            HK RLK +LGCEPSD+Q+A SLRIS  +LQSKL++CSLAREKLAMSNVRLVM+IAQKYDN
Sbjct: 228  HKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDN 287

Query: 1233 MGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHI 1412
            MGA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALVDNSRTLRLP+H+
Sbjct: 288  MGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHL 347

Query: 1413 HERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNG 1592
            HERL  IR AK +LEE G+TP+I +IAE LNMS++K+RNA EA ++VFSLDR+AFPSLNG
Sbjct: 348  HERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNG 407

Query: 1593 LPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQS 1772
            LPGET HSYIAD R ENNPWHG +EW+LK+EVN L++STL ERE+EIIRLYHGL+ EC +
Sbjct: 408  LPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLT 467

Query: 1773 WEEISRQIGLSRER 1814
            WE+IS+++GLSRER
Sbjct: 468  WEDISKRMGLSRER 481


>XP_003539986.1 PREDICTED: RNA polymerase sigma factor sigA [Glycine max] KHN46496.1
            RNA polymerase sigma factor rpoD [Glycine soja]
            KRH23963.1 hypothetical protein GLYMA_12G013300 [Glycine
            max]
          Length = 503

 Score =  498 bits (1281), Expect = e-168
 Identities = 270/495 (54%), Positives = 348/495 (70%), Gaps = 3/495 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL+ G+R                +   D GS     V T+ +IVAKK++N+  
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGS-DFGSTHYQIVPTKSLIVAKKSSNYTP 59

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQD-ELQNPDME 695
                     + Q+I+A+KEH                P+IA  WF S    D E+++ +M 
Sbjct: 60   TFPASNQ--QNQSIKALKEHVDD------------APTIADPWFQSYNSNDLEVESSEMG 105

Query: 696  SSLEAIILLQKAMLEKQWNLSFDQS--QETIHTGESIKKTGVIRSGVSARKRRNLTRRKC 869
             S+EA++LLQK+MLEKQWNLSF++    E    G+  +K  V  SGVSAR+RR  T+RK 
Sbjct: 106  YSVEALLLLQKSMLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRK- 164

Query: 870  LPGGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVE 1049
                 +  T  + + +  +S +LL ++ KGY++G V  + LSHA+VV LS+KI+ GLS+E
Sbjct: 165  ----TAIKTCGAMQLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLE 220

Query: 1050 EHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYD 1229
            EHK RLK KLGCEPSD Q+A SL+IS  EL+++++ECSLAREKLAMSNVRLVM+IAQKYD
Sbjct: 221  EHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYD 280

Query: 1230 NMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSH 1409
            N+GA++ D             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H
Sbjct: 281  NLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAH 340

Query: 1410 IHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLN 1589
            +HERLS IR AK +LEE GITPTI +IA+ LNMS+KK+RNA EA +++ SLDR+AFPSLN
Sbjct: 341  LHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLN 400

Query: 1590 GLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQ 1769
            GL GET HSYIAD R+EN PW+G +EW+LKDEVN L+N TL ERE+EIIRLY+GLE EC 
Sbjct: 401  GLQGETHHSYIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECL 460

Query: 1770 SWEEISRQIGLSRER 1814
            +WE+IS++IGLSRER
Sbjct: 461  TWEDISKRIGLSRER 475


>XP_006878659.1 PREDICTED: RNA polymerase sigma factor sigA [Amborella trichopoda]
            ERM94804.1 hypothetical protein AMTR_s00011p00266100
            [Amborella trichopoda]
          Length = 497

 Score =  497 bits (1280), Expect = e-168
 Identities = 277/496 (55%), Positives = 339/496 (68%), Gaps = 4/496 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+G+++G+R                  + D G+ Q P V  +  IV+KK+  F  
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDIERVI--PIYDFGATQFPAVSHKSFIVSKKSPGF-- 56

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q I A+KEH                PS       S        NPD ES
Sbjct: 57   -GPNSPSNRQTQYINAIKEHVN-------------APS------SSSSSSTTEANPDFES 96

Query: 699  SLEAIILLQKAMLEKQWNLSFDQS-QETIHTGESIKKTGVIRSGVSARKRRNLTRRKCLP 875
            SLEA+ILLQK+MLEKQWNLSFDQ+   T    ES KK GVI SG SAR+RRN  RR   P
Sbjct: 97   SLEALILLQKSMLEKQWNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRR---P 153

Query: 876  GGNSGDTLLSTREERG---VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSV 1046
                  T+L  R+++    VS +LL   F+GY++G      LSHA+VV LS KIRAGLS+
Sbjct: 154  LNQRAGTVLVRRKKQATPIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSL 213

Query: 1047 EEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKY 1226
            EEHK RLK KLG +PSD+ LA+SL+IS  EL SKL+ECSLA+EKLAMSN+RLVM+IAQKY
Sbjct: 214  EEHKSRLKEKLGFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKY 273

Query: 1227 DNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPS 1406
            DNMG ++AD             EKFDSSKGF+ISTYVYWWIRQGVSRA+V+NSRTLRLP+
Sbjct: 274  DNMGIEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPT 333

Query: 1407 HIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSL 1586
            H+HERLS IR AK +L+E G+TP+I +IA+ LNMS+KK++NA EA T+VFSLDR+AFP+L
Sbjct: 334  HLHERLSLIRNAKIRLKEQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTL 393

Query: 1587 NGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESEC 1766
            NGLPGET HSYIAD  L NNPWHG +EW LK EVN L++STL EREQ+IIRLY+GL+ EC
Sbjct: 394  NGLPGETLHSYIADNNLMNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKEC 453

Query: 1767 QSWEEISRQIGLSRER 1814
             +WE+ISR+IGLSRER
Sbjct: 454  HTWEDISRKIGLSRER 469


>XP_018842724.1 PREDICTED: RNA polymerase sigma factor sigA-like [Juglans regia]
            XP_018842725.1 PREDICTED: RNA polymerase sigma factor
            sigA-like [Juglans regia]
          Length = 509

 Score =  498 bits (1281), Expect = e-168
 Identities = 279/495 (56%), Positives = 346/495 (69%), Gaps = 3/495 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA TAV+GL++G+R                  V D+  AQ     T+KVI +KK++NF  
Sbjct: 2    MATTAVIGLSAGKRLLSSSYHYSDLTEKLPF-VNDNALAQYQITSTKKVISSKKSSNFGP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPI-IQDELQNPDME 695
                     E  +I+AVKE                +PS A+ WF  P  +++E  +PD  
Sbjct: 61   SFPSAIRQAE--SIKAVKEDVDIIS----------SPSTAEPWFQRPNNLEEESSDPDY- 107

Query: 696  SSLEAIILLQKAMLEKQWNLSFDQSQETIHT-GESIKKTGVIRSGVSARKRRNLTRRKCL 872
              +EA++LLQ++MLEKQWNLSF+Q   T    G+S +K  V  SGVSAR+RR   R+K L
Sbjct: 108  -LVEALLLLQRSMLEKQWNLSFEQKVLTDSARGKSHRKISVTCSGVSARQRRMKARKKVL 166

Query: 873  PGGNSGDTLLSTREERG-VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVE 1049
                      + ++ R  +S +LL N  +GY+ G V  + L+HADVV LSKKI AGLS+E
Sbjct: 167  NKTGYVVPPYTGKQLRSLISPELLQNHSRGYVNGVVSEELLTHADVVCLSKKIGAGLSLE 226

Query: 1050 EHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYD 1229
            EHK RLK +LGCEPSD QLA SLRI   ELQSKL+ECSLAREKLAMSNVRLVM+IAQ+Y+
Sbjct: 227  EHKLRLKERLGCEPSDDQLATSLRIPRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYE 286

Query: 1230 NMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSH 1409
            NMGA++AD             EKFDSSKG RISTYVYWWIRQGVSR LV+NSRTLRLP+H
Sbjct: 287  NMGAEMADLVQGGLIGLLRGIEKFDSSKGCRISTYVYWWIRQGVSRTLVENSRTLRLPAH 346

Query: 1410 IHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLN 1589
            +HERL  IR AK +LEE GITP+I +IAE L MS+KK++NA EA ++VFSLDR+AFPSLN
Sbjct: 347  MHERLGLIRNAKVRLEEKGITPSIDRIAECLKMSKKKVKNATEAISKVFSLDREAFPSLN 406

Query: 1590 GLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQ 1769
            GLPGET HSYIAD RLENNPWHG +E +LKDEVN L+N TLGERE++IIRLYHGL++EC 
Sbjct: 407  GLPGETHHSYIADNRLENNPWHGVDELALKDEVNKLINMTLGERERDIIRLYHGLDNECL 466

Query: 1770 SWEEISRQIGLSRER 1814
            +WE+IS++IGLSRER
Sbjct: 467  TWEDISKRIGLSRER 481


>XP_011012457.1 PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
            XP_011012458.1 PREDICTED: RNA polymerase sigma factor
            sigA [Populus euphratica]
          Length = 509

 Score =  497 bits (1280), Expect = e-168
 Identities = 272/497 (54%), Positives = 347/497 (69%), Gaps = 5/497 (1%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                 SV DHG    PT  T+ V+VAKK++N+  
Sbjct: 2    MATAAVIGLSTGKRLLSSSFYYSDLTEKLS-SVNDHGITYCPTATTKNVVVAKKSSNYGP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                        +I+A+KEH             F T       FD      E ++  ++ 
Sbjct: 61   NFPSSNR--NSHSIKALKEHVDTASASSNVATWFKT-------FDD----FEEESSALDY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGE-SIKKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+++  +  T + + KK  V  SGVSAR+RR   RRK   
Sbjct: 108  SVEALLLLQKSMLEKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRK--- 164

Query: 876  GGNSGDTLLSTREERG----VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLS 1043
              N    +  + + +     +S DLL N+ KGY++G V  + L H +VV+LS+ IRAGLS
Sbjct: 165  NQNQSKFMSQSSDFKFLRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLS 224

Query: 1044 VEEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQK 1223
             E+HK RLK +LGCEPSD+Q+A SLRIS  +LQ+KL++CSLAREKLAMSNVRLVM+IAQK
Sbjct: 225  FEDHKSRLKERLGCEPSDEQIADSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQK 284

Query: 1224 YDNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLP 1403
            YDNMGA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALVDNSRTLRLP
Sbjct: 285  YDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLP 344

Query: 1404 SHIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPS 1583
            +H+HERL  IR AK +LEE G+TP+I +IAE LNMS++K+RNA EA ++VFSLDR+AFPS
Sbjct: 345  NHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPS 404

Query: 1584 LNGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESE 1763
            LNGLPGET HSYIAD R ENNPWHG +EW+LK+EVN L++STL ERE+EIIRLYHGL+ E
Sbjct: 405  LNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQE 464

Query: 1764 CQSWEEISRQIGLSRER 1814
            C +WE+IS+++GLSRER
Sbjct: 465  CLTWEDISKRMGLSRER 481


>OAY70832.1 RNA polymerase sigma factor sigA [Ananas comosus]
          Length = 501

 Score =  497 bits (1279), Expect = e-168
 Identities = 268/493 (54%), Positives = 339/493 (68%), Gaps = 1/493 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G R                  V DHG  Q  +  ++  I+A+K+ NF  
Sbjct: 2    MATAAVIGLSAGNRLLSTSFYPSDLSEKLF-GVPDHGPMQFSSAASKSAIIAQKSPNFGP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + +AI+A+KEH                 S  ++W ++P I  +  +PD+E+
Sbjct: 61   NASSNR---QMRAIKALKEHAHSA-----------ATSTTENWLNTPEISPD-DDPDLEN 105

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESIKKTGVIRSGVSARKRRNLTRRK-CLP 875
            SLE ++LLQK+MLEKQW L FDQ +      E   K  V RSGVSAR+RR  TRR+  + 
Sbjct: 106  SLEVLVLLQKSMLEKQWELPFDQMKTFTEPAEKNNKVEVTRSGVSARQRRTDTRRRFSIM 165

Query: 876  GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEEH 1055
              N G  + ST     VS +LL  + +GY++G V  D L+HA+VV LSKKI+ GL +EEH
Sbjct: 166  PLNRGKQIRST-----VSPELLQARNRGYVKGMVSEDLLTHAEVVNLSKKIKDGLYLEEH 220

Query: 1056 KKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDNM 1235
            + +LK KLG EPSD+QLA SLR+S  EL S+L ECS AREKLAMSN+RLV++IAQKYDN+
Sbjct: 221  RAKLKEKLGTEPSDKQLACSLRMSRAELHSRLFECSQAREKLAMSNIRLVISIAQKYDNL 280

Query: 1236 GADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHIH 1415
            GA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H+H
Sbjct: 281  GAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 340

Query: 1416 ERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNGL 1595
            ERLS IR AK +LE+ GITP+I K+AE LNMS+KK+RNA EA  +V SLDR+AFPSLNGL
Sbjct: 341  ERLSLIRNAKIRLEDKGITPSIDKLAESLNMSQKKVRNATEAVNKVLSLDREAFPSLNGL 400

Query: 1596 PGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQSW 1775
            PGET HSYIAD  LENNPWHGFEEWS+KDEVN LL+  L +RE++I++LYHGL  E ++W
Sbjct: 401  PGETLHSYIADRNLENNPWHGFEEWSVKDEVNKLLHLALNKRERDIVQLYHGLGGESRTW 460

Query: 1776 EEISRQIGLSRER 1814
            E+ISRQ GLSRER
Sbjct: 461  EDISRQFGLSRER 473


>XP_006484698.1 PREDICTED: RNA polymerase sigma factor sigA [Citrus sinensis]
            XP_006484699.1 PREDICTED: RNA polymerase sigma factor
            sigA [Citrus sinensis] XP_006484700.1 PREDICTED: RNA
            polymerase sigma factor sigA [Citrus sinensis]
          Length = 508

 Score =  496 bits (1277), Expect = e-167
 Identities = 269/494 (54%), Positives = 349/494 (70%), Gaps = 2/494 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                + + D GSA      T+ V+ AKK++N+  
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSY-INDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q I+A+KEH                 S A+ W + P   +E ++ +++ 
Sbjct: 61   SFPSSNR--QTQPIKALKEHVDTNFA-----------STAEPWAEPPNSIEE-ESSELDY 106

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+++  T    +   KK  V  SGVSAR+RR  +++K L 
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166

Query: 876  GGNSGDTLLSTREERG-VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEE 1052
               S      +++ R  +S +L+ N  KGY++G V  + L+HA+VV+LSKKI+ GLS+++
Sbjct: 167  QNKSVPQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226

Query: 1053 HKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDN 1232
            HK RLK +LGCEPS +QLAASLRIS  ELQS LMECSLAREKL MSNVRLVM+IAQ+YDN
Sbjct: 227  HKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 286

Query: 1233 MGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHI 1412
            MGAD+AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H+
Sbjct: 287  MGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 346

Query: 1413 HERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNG 1592
            HERL  IR AK +LEE G+TP++ +IAE LNMS+KK+RNA EA  +VFSLDR+AFPSLNG
Sbjct: 347  HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 406

Query: 1593 LPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQS 1772
            LPGET HSYIAD R+ENNPWHG ++W+LKDEVN L+  TLGERE+EIIRLY+GL+ EC +
Sbjct: 407  LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 466

Query: 1773 WEEISRQIGLSRER 1814
            WE+IS++IGLSRER
Sbjct: 467  WEDISKRIGLSRER 480


>XP_020114871.1 RNA polymerase sigma factor sigA isoform X1 [Ananas comosus]
          Length = 501

 Score =  495 bits (1275), Expect = e-167
 Identities = 267/493 (54%), Positives = 339/493 (68%), Gaps = 1/493 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G R                  V DHG  Q  +  ++  I+A+K+ NF  
Sbjct: 2    MATAAVIGLSAGNRLLSTSFYPSDLSEKLF-GVPDHGPMQFSSAASKSAIIAQKSPNFGP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + +AI+A+KEH                 S  ++W ++P I  +  +PD+E+
Sbjct: 61   NASSNR---QMRAIKALKEHAHSA-----------ATSTTENWLNTPEISPD-DDPDLEN 105

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESIKKTGVIRSGVSARKRRNLTRRK-CLP 875
            SLE ++LLQK+MLEKQW L FDQ +      E   K  V RSGVSAR+RR  TRR+  + 
Sbjct: 106  SLEVLVLLQKSMLEKQWELPFDQMKTFTEPAEKNNKVEVTRSGVSARQRRTDTRRRFSIM 165

Query: 876  GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEEH 1055
              N G  + ST     VS +LL  + +GY++G V  D L+HA+VV LSKKI+ GL ++EH
Sbjct: 166  PLNRGKQIRST-----VSPELLQARNRGYVKGMVSEDLLTHAEVVNLSKKIKDGLYLKEH 220

Query: 1056 KKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDNM 1235
            + +LK KLG EPSD+QLA SLR+S  EL S+L ECS AREKLAMSN+RLV++IAQKYDN+
Sbjct: 221  RAKLKEKLGTEPSDKQLACSLRMSRAELHSRLFECSQAREKLAMSNIRLVISIAQKYDNL 280

Query: 1236 GADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHIH 1415
            GA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H+H
Sbjct: 281  GAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 340

Query: 1416 ERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNGL 1595
            ERLS IR AK +LE+ GITP+I K+AE LNMS+KK+RNA EA  +V SLDR+AFPSLNGL
Sbjct: 341  ERLSLIRNAKIRLEDKGITPSIDKLAESLNMSQKKVRNATEAVNKVLSLDREAFPSLNGL 400

Query: 1596 PGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQSW 1775
            PGET HSYIAD  LENNPWHGFEEWS+KDEVN LL+  L +RE++I++LYHGL  E ++W
Sbjct: 401  PGETLHSYIADRNLENNPWHGFEEWSVKDEVNKLLHLALNKRERDIVQLYHGLGGESRTW 460

Query: 1776 EEISRQIGLSRER 1814
            E+ISRQ GLSRER
Sbjct: 461  EDISRQFGLSRER 473


>KDO48032.1 hypothetical protein CISIN_1g010521mg [Citrus sinensis] KDO48033.1
            hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  495 bits (1274), Expect = e-167
 Identities = 269/494 (54%), Positives = 350/494 (70%), Gaps = 2/494 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                + + D GSA      T+ V+ AKK++N+  
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSY-INDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q I+A+KEH                 S A+ W + P   +E ++ +++ 
Sbjct: 61   SFPSSNR--QTQPIKALKEHVDTNFA-----------STAEPWAEPPNSIEE-ESSELDY 106

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+++  T    +   KK  V  SGVSAR+RR  +++K L 
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166

Query: 876  GGNSGDTLLSTREERG-VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEE 1052
               S      +++ R  +S +L+ N+ KGY++G V  + L+HA+VV+LSKKI+ GLS+++
Sbjct: 167  QNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226

Query: 1053 HKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDN 1232
            HK RLK +LGCEPS +QLAASLRIS  ELQS LMECSLAREKL MSNVRLVM+IAQ+YDN
Sbjct: 227  HKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 286

Query: 1233 MGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHI 1412
            MGAD+AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H+
Sbjct: 287  MGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 346

Query: 1413 HERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNG 1592
            HERL  IR AK +LEE G+TP++ +IAE LNMS+KK+RNA EA  +VFSLDR+AFPSLNG
Sbjct: 347  HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 406

Query: 1593 LPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQS 1772
            LPGET HSYIAD R+ENNPWHG ++W+LKDEVN L+  TLGERE+EIIRLY+GL+ EC +
Sbjct: 407  LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 466

Query: 1773 WEEISRQIGLSRER 1814
            WE+IS++IGLSRER
Sbjct: 467  WEDISKRIGLSRER 480


>XP_006437403.1 hypothetical protein CICLE_v10031289mg [Citrus clementina] ESR50643.1
            hypothetical protein CICLE_v10031289mg [Citrus
            clementina]
          Length = 508

 Score =  494 bits (1273), Expect = e-167
 Identities = 269/494 (54%), Positives = 348/494 (70%), Gaps = 2/494 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                + + D GSA      T+ V+ AKK++N+  
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSY-INDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                     + Q I+A+KEH                 S A+ W + P   +E ++ +++ 
Sbjct: 61   SFPSSNR--QTQPIKALKEHVDTNFA-----------STAEPWAEPPNSIEE-ESSELDY 106

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQWNLSF+++  T    +   KK  V  SGVSAR+RR  +++K L 
Sbjct: 107  SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166

Query: 876  GGNSGDTLLSTREERG-VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEE 1052
               S      +++ R  +S +L+ N  KGY++G V  + L+HA+VV+LSKKI+ GLS+++
Sbjct: 167  QNKSVLQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226

Query: 1053 HKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDN 1232
            HK RLK +LGCEPS +QLAASLRIS  ELQS LMECSLAREKL MSNVRLVM+IAQ+YDN
Sbjct: 227  HKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 286

Query: 1233 MGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHI 1412
            MGAD+AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+H+
Sbjct: 287  MGADMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 346

Query: 1413 HERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNG 1592
            HERL  IR AK +LEE G+TP + +IAE LNMS+KK+RNA EA  +VFSLDR+AFPSLNG
Sbjct: 347  HERLGLIRNAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 406

Query: 1593 LPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQS 1772
            LPGET HSYIAD R+ENNPWHG ++W+LKDEVN L+  TLGERE+EIIRLY+GL+ EC +
Sbjct: 407  LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 466

Query: 1773 WEEISRQIGLSRER 1814
            WE+IS++IGLSRER
Sbjct: 467  WEDISKRIGLSRER 480


>XP_007029766.2 PREDICTED: RNA polymerase sigma factor sigA isoform X1 [Theobroma
            cacao]
          Length = 508

 Score =  494 bits (1272), Expect = e-167
 Identities = 271/493 (54%), Positives = 346/493 (70%), Gaps = 1/493 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GLT+G+R                ++  D+GS+   T  T+ +IVAKK++N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYAN-DYGSSHHQTSSTKSLIVAKKSSN--C 58

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                       Q+I+A+KEH             F   +             E+++ D++ 
Sbjct: 59   SQSLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNHL-----------EVESYDLDY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQW LSF+++  T      I KK  V  SGVSAR+RR  T+RK L 
Sbjct: 108  SVEALLLLQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILS 167

Query: 876  GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEEH 1055
               S     + +    +S +LL ++ KGY++G V  + LSHA+VV+LSKKI+AGLS+EEH
Sbjct: 168  QNKSIIQPNAKQLRSLISPELLQSRLKGYVKGVVSEELLSHAEVVRLSKKIKAGLSLEEH 227

Query: 1056 KKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDNM 1235
            + RLK +LGCEPSD+QLA SL+IS  EL+SKL+ECSLAREKLAMSNVRLVM+IAQ+YDNM
Sbjct: 228  RLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNM 287

Query: 1236 GADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHIH 1415
            GA+++D             EKFDSSKG++ISTYVYWWIRQGVSRALV+NSRTLRLP+H+H
Sbjct: 288  GAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 347

Query: 1416 ERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNGL 1595
            ERL  IR AK +LEE GITPTI +IAE LNMS+KK+RNA EA ++VFSLDRDAFPSLNGL
Sbjct: 348  ERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGL 407

Query: 1596 PGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQSW 1775
            PGET HSYIAD  +EN PWHG +EW+LKDEVN L+  TLGERE+EIIRLY+GL+ E  +W
Sbjct: 408  PGETHHSYIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTW 467

Query: 1776 EEISRQIGLSRER 1814
            E+IS++IGLSRER
Sbjct: 468  EDISKRIGLSRER 480


>XP_016902935.1 PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo]
          Length = 509

 Score =  494 bits (1271), Expect = e-167
 Identities = 269/496 (54%), Positives = 348/496 (70%), Gaps = 4/496 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA TA++GL + +R                ++  D+   Q     T+ V++AK +ANF  
Sbjct: 2    MATTAIIGLGAAKRLLNSSSYYSDFTEKILYAN-DYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPS--IAKDWFDSPIIQDELQNPDM 692
                     + Q I+AVKEH               TPS   A+ W  +  I ++ +  D+
Sbjct: 61   SYPLSNRHSQ-QCIKAVKEHVE-------------TPSSPTAEPWLPNTTIWED-EETDL 105

Query: 693  ESSLEAIILLQKAMLEKQWNLSFDQSQETIHTGE-SIKKTGVIRSGVSARKRRNLTRRKC 869
            + ++EA++LLQK+MLEKQWNLSF+Q+  T    E ++KK  V  SGVSAR+RR  ++RK 
Sbjct: 106  KCTVEALLLLQKSMLEKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKI 165

Query: 870  LPGGN-SGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSV 1046
                       +S +    +S +LL N+ KGY++G +  + LSHA+VV+LSKKI+ GL++
Sbjct: 166  QSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLAL 225

Query: 1047 EEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKY 1226
            EEHK RLK +LGCEPS+ QLA SL+IS  EL+S++MECSLAREKLAMSNVRLVM+IAQ+Y
Sbjct: 226  EEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRY 285

Query: 1227 DNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPS 1406
            DNMGA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+
Sbjct: 286  DNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPT 345

Query: 1407 HIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSL 1586
            H+HERL  IR AK KL+E GITP++ +IAE LNMS+KK++NA EA ++VFSLDR+AFPSL
Sbjct: 346  HLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSL 405

Query: 1587 NGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESEC 1766
            NGLPGET HSYIAD  LENNPWHG + W LK EVN L+N TLG+RE+EIIRLYHGL++EC
Sbjct: 406  NGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNEC 465

Query: 1767 QSWEEISRQIGLSRER 1814
             +WEEIS++IGLSRER
Sbjct: 466  LTWEEISKRIGLSRER 481


>EOY10268.1 Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  493 bits (1269), Expect = e-166
 Identities = 271/493 (54%), Positives = 346/493 (70%), Gaps = 1/493 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GLT+G+R                ++  D+GS+   T  T+ +IVAKK++N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYAN-DYGSSHHQTSSTKSLIVAKKSSN--C 58

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                       Q+I+A+KEH             F   +             E+++ D++ 
Sbjct: 59   SQSLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDL-----------EVESYDLDY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S+EA++LLQK+MLEKQW LSF+++  T      I KK  V  SGVSAR+RR  T+RK L 
Sbjct: 108  SVEALLLLQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILI 167

Query: 876  GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEEH 1055
               S     + +    +S +LL ++ KGY++G V  + LSHA+VV+LSKKI+AGLS+EEH
Sbjct: 168  QNKSIIQPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEH 227

Query: 1056 KKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDNM 1235
            + RLK +LGCEPSD+QLA SL+IS  EL+SKL+ECSLAREKLAMSNVRLVM+IAQ+YDNM
Sbjct: 228  RLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNM 287

Query: 1236 GADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHIH 1415
            GA+++D             EKFDSSKG++ISTYVYWWIRQGVSRALV+NSRTLRLP+H+H
Sbjct: 288  GAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 347

Query: 1416 ERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNGL 1595
            ERL  IR AK +LEE GITPTI +IAE LNMS+KK+RNA EA ++VFSLDRDAFPSLNGL
Sbjct: 348  ERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGL 407

Query: 1596 PGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQSW 1775
            PGET HSYIAD  +EN PWHG +EW+LKDEVN L+  TLGERE+EIIRLY+GL+ E  +W
Sbjct: 408  PGETHHSYIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTW 467

Query: 1776 EEISRQIGLSRER 1814
            E+IS++IGLSRER
Sbjct: 468  EDISKRIGLSRER 480


>OMO87271.1 RNA polymerase sigma-70 [Corchorus capsularis]
          Length = 508

 Score =  493 bits (1268), Expect = e-166
 Identities = 267/493 (54%), Positives = 345/493 (69%), Gaps = 1/493 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA TAV+GL++G+R                ++  D+G +  PT  T+ +IVAKK++N   
Sbjct: 2    MATTAVIGLSTGKRLLSSSFSYSDIIEKLSYAN-DYGCSHHPTSSTKSLIVAKKSSN--C 58

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQDELQNPDMES 698
                       Q+I+A+KEH                 S A+ WF      DE +N D++ 
Sbjct: 59   SQNLPSSNRRTQSIKALKEHVDSATVI----------STAEPWFQGSNDLDE-ENYDLDY 107

Query: 699  SLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRRNLTRRKCLP 875
            S++A++LLQK+MLEKQW LSF+++  T   G    KK  V  SGVSAR+RR  T+RK L 
Sbjct: 108  SVDALLLLQKSMLEKQWTLSFERTVFTESPGRKTHKKIPVTCSGVSARQRRLNTKRKLLR 167

Query: 876  GGNSGDTLLSTREERGVSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSVEEH 1055
               S     + +    +S +L  ++  GY++G V  + LSHA+VV+LSKKI+ GLS+E+H
Sbjct: 168  QNKSVIQPSAKQLRSLISPELFQSRLNGYVKGVVSEELLSHAEVVRLSKKIKVGLSLEDH 227

Query: 1056 KKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKYDNM 1235
            + RL  +LGCEPSD+QLA SL+I+  EL+SK++ECSLAREKLAMSNVRLVM+IAQ+YDNM
Sbjct: 228  RSRLTERLGCEPSDEQLATSLKITRAELRSKVIECSLAREKLAMSNVRLVMSIAQRYDNM 287

Query: 1236 GADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPSHIH 1415
            GA+++D             EKFDSSKG++ISTYVYWWIRQGVSRALV+NSRTLRLP+H+H
Sbjct: 288  GAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 347

Query: 1416 ERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSLNGL 1595
            ERL  IR AK +LEE GITPTI +IAE LNMS+KK+RNA EA ++VFSLDRDAFPSLNGL
Sbjct: 348  ERLGLIRNAKNRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGL 407

Query: 1596 PGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESECQSW 1775
            PGET HSYI D  +ENNPWHG +EW+LKDEVN L+  TLGERE+EIIRLY+GL+    +W
Sbjct: 408  PGETHHSYIPDNHVENNPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKGSLTW 467

Query: 1776 EEISRQIGLSRER 1814
            E+IS++IGLSRER
Sbjct: 468  EDISKRIGLSRER 480


>XP_008234513.1 PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
          Length = 512

 Score =  493 bits (1268), Expect = e-166
 Identities = 274/496 (55%), Positives = 343/496 (69%), Gaps = 4/496 (0%)
 Frame = +3

Query: 339  MAATAVVGLTSGQRXXXXXXXXXXXXXXXXHSVLDHGSAQLPTVLTRKVIVAKKNANFXX 518
            MA  AV+GL++G+R                H    HG        T+ V+ A+K +N   
Sbjct: 2    MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSN--C 59

Query: 519  XXXXXXXXXEKQAIRAVKEHXXXXXXXXXXXXXFYTPSIAKDWFDSPIIQD-ELQNPDME 695
                      +Q+IRA+KEH                 S  + WF    + D E ++ D+E
Sbjct: 60   SSRFPSSNRPQQSIRALKEHVHTASAPS---------SATQQWFQE--LNDLEEESSDLE 108

Query: 696  SSLEAIILLQKAMLEKQWNLSFDQSQETIHTGESI-KKTGVIRSGVSARKRR-NLTRRKC 869
             S+EA++LLQK+MLEKQWNLSF++      T ++  KK  V  SGVSAR+RR   T+RK 
Sbjct: 109  YSVEALLLLQKSMLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKT 168

Query: 870  LPGGNSGDTLLSTREERG-VSHDLLHNQFKGYIRGRVRVDHLSHADVVQLSKKIRAGLSV 1046
            L          + +  R  VS +LL N+ KGY++G +  D L+H +VV+LSKKI+ GLSV
Sbjct: 169  LNKSTCVMHPSTNKPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSV 228

Query: 1047 EEHKKRLKVKLGCEPSDQQLAASLRISCVELQSKLMECSLAREKLAMSNVRLVMAIAQKY 1226
            EEHK RLK +LGCEPSD+QLA SLRIS  +LQSKL+EC LAREKLAMSNVRLVM+IAQ+Y
Sbjct: 229  EEHKSRLKERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRY 288

Query: 1227 DNMGADLADXXXXXXXXXXXXXEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPS 1406
            DNMGA++AD             EKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP+
Sbjct: 289  DNMGAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPT 348

Query: 1407 HIHERLSSIRTAKTKLEESGITPTIAKIAEVLNMSEKKIRNAAEAATRVFSLDRDAFPSL 1586
            H+HERL  IR AK +LEE GITP+I +IAE LNMS+KK+RNA EA ++VFSLDRDAFPSL
Sbjct: 349  HLHERLGLIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSL 408

Query: 1587 NGLPGETFHSYIADTRLENNPWHGFEEWSLKDEVNTLLNSTLGEREQEIIRLYHGLESEC 1766
            NGLPGET HSYIAD RLEN PWHG + W+LK+EV+ L+N  LGERE+EII+LY+GLE+EC
Sbjct: 409  NGLPGETHHSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENEC 468

Query: 1767 QSWEEISRQIGLSRER 1814
             +WE+IS++IGLSRER
Sbjct: 469  LTWEDISKRIGLSRER 484


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