BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00044557
         (400 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_005649894.1| polyadenylate binding protein [Coccomyxa sub...   114   1e-23
ref|XP_005844200.1| hypothetical protein CHLNCDRAFT_59028 [Chlor...   100   2e-19
ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvo...    86   4e-15
gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinh...    84   2e-14
ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydo...    84   2e-14
dbj|BAE22747.1| unnamed protein product [Mus musculus]                 82   1e-13
pdb|1JGN|A Chain A, Solution Structure Of The C-Terminal Pabc Do...    80   3e-13
dbj|BAM18939.1| polyA-binding protein [Papilio polytes]                80   3e-13
dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]                 80   3e-13
pdb|3KUS|A Chain A, Crystal Structure Of The Mlle Domain Of Poly...    80   3e-13
gb|EAX07261.1| poly(A) binding protein, cytoplasmic 4 (inducible...    80   3e-13
ref|XP_007257637.1| PREDICTED: polyadenylate-binding protein 4-l...    79   5e-13
ref|XP_007257636.1| PREDICTED: polyadenylate-binding protein 4-l...    79   5e-13
ref|XP_007067653.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13
ref|XP_007067652.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13
ref|XP_006139196.1| PREDICTED: polyadenylate-binding protein 4 [...    79   5e-13
ref|XP_005302176.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13
ref|XP_005302175.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13
ref|XP_005239828.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13
ref|XP_005239827.1| PREDICTED: polyadenylate-binding protein 4 i...    79   5e-13

>ref|XP_005649894.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
           gi|384251873|gb|EIE25350.1| polyadenylate binding
           protein [Coccomyxa subellipsoidea C-169]
          Length = 681

 Score =  114 bits (285), Expect = 1e-23
 Identities = 62/101 (61%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
 Frame = +2

Query: 2   PAAALPA-APSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITG 178
           PA   P   PS V+PGQ+G  LTTAMLAAA PEQQKQMLGERLFPLVQ+LQPELAGKITG
Sbjct: 572 PAQPQPVPTPSAVVPGQEGGNLTTAMLAAAAPEQQKQMLGERLFPLVQRLQPELAGKITG 631

Query: 179 MXXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPEDV 301
           M                     K DEAI+VL+QHNALPE +
Sbjct: 632 MLLEMDNSELLLLLESPDALVAKVDEAITVLKQHNALPEGI 672


>ref|XP_005844200.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
           gi|307103841|gb|EFN52098.1| hypothetical protein
           CHLNCDRAFT_59028 [Chlorella variabilis]
          Length = 634

 Score =  100 bits (249), Expect = 2e-19
 Identities = 51/98 (52%), Positives = 62/98 (63%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           P    PAAP+  +   +G QLT AMLAAAP EQQKQ+LGERLFPLV  +QP+LAGKITGM
Sbjct: 524 PPVGAPAAPAAAVTPTEGGQLTAAMLAAAPAEQQKQLLGERLFPLVANVQPDLAGKITGM 583

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA+SVL+QHNA+P+
Sbjct: 584 LLEMDNSELLLLLEDPTALDAKVEEAVSVLKQHNAIPD 621


>ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
           nagariensis] gi|300260828|gb|EFJ45045.1| hypothetical
           protein VOLCADRAFT_82578 [Volvox carteri f. nagariensis]
          Length = 620

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 50/98 (51%), Positives = 58/98 (59%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA A+PA    V   QQ   LT A LAAA PEQQK M+GERL+P V +LQP+LAGKITGM
Sbjct: 521 PAVAVPAPEPEVPAAQQ--PLTAAALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGM 578

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K DEAI+VL+ HNA+PE
Sbjct: 579 LLEMDNAELLMLLESHEALVAKVDEAIAVLKIHNAIPE 616


>gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
          Length = 623

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 47/99 (47%), Positives = 57/99 (57%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PAAA PAA +          LT + LAAA PEQQK M+GERL+P V +LQP+LAGKITGM
Sbjct: 522 PAAAAPAAAAEPEAPAAQQPLTASALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGM 581

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPED 298
                                K DEAI+VL+QHN + E+
Sbjct: 582 LLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 620


>ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
           gi|158283659|gb|EDP09409.1| polyadenylate-binding
           protein RB47 [Chlamydomonas reinhardtii]
          Length = 636

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 47/99 (47%), Positives = 57/99 (57%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PAAA PAA +          LT + LAAA PEQQK M+GERL+P V +LQP+LAGKITGM
Sbjct: 535 PAAAAPAAAAEPEAPAAQQPLTASALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGM 594

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPED 298
                                K DEAI+VL+QHN + E+
Sbjct: 595 LLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEE 633


>dbj|BAE22747.1| unnamed protein product [Mus musculus]
          Length = 590

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 48/102 (47%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
 Frame = +2

Query: 5   AAALPA-----APSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGK 169
           AAALPA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q +   LAGK
Sbjct: 476 AAALPAIQPLQAPQPAVQVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK 535

Query: 170 ITGMXXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
           ITGM                     K DEA++VL+ H+A  E
Sbjct: 536 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKE 577


>pdb|1JGN|A Chain A, Solution Structure Of The C-Terminal Pabc Domain Of Human
           Poly(A)-Binding Protein In Complex With The Peptide From
           Paip2 gi|159162551|pdb|1JH4|A Chain A, Solution
           Structure Of The C-Terminal Pabc Domain Of Human
           Poly(A)-Binding Protein In Complex With The Peptide From
           Paip1
          Length = 98

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 41/81 (50%), Positives = 50/81 (61%)
 Frame = +2

Query: 44  GQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGMXXXXXXXXXXXXXX 223
           G  GS LT +MLA+APP++QKQMLGERLFPL+Q + P LAGKITGM              
Sbjct: 1   GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60

Query: 224 XXXXXXXKADEAISVLRQHNA 286
                  K DEA++VL+ H A
Sbjct: 61  SPESLRSKVDEAVAVLQAHQA 81


>dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
          Length = 611

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 43/90 (47%), Positives = 53/90 (58%)
 Frame = +2

Query: 17  PAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGMXXXXX 196
           P AP   +  Q    LTT MLAAAP ++QKQMLGERLFPL+Q++ P+LAGKITGM     
Sbjct: 514 PPAPQPAVHIQGQEPLTTTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEID 573

Query: 197 XXXXXXXXXXXXXXXXKADEAISVLRQHNA 286
                           K DEA++VL+ H A
Sbjct: 574 NSELLHMLEHGESLKAKVDEAVAVLQAHQA 603


>dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
          Length = 619

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 43/90 (47%), Positives = 53/90 (58%)
 Frame = +2

Query: 17  PAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGMXXXXX 196
           P AP   +  Q    LTT MLAAAP ++QKQMLGERLFPL+Q++ P+LAGKITGM     
Sbjct: 514 PPAPQPAVHIQGQEPLTTTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEID 573

Query: 197 XXXXXXXXXXXXXXXXKADEAISVLRQHNA 286
                           K DEA++VL+ H A
Sbjct: 574 NSELLHMLEHGESLKAKVDEAVAVLQAHQA 603


>pdb|3KUS|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
           Protein In Complex With The Binding Region Of Paip2
           gi|288563115|pdb|3KUS|B Chain B, Crystal Structure Of
           The Mlle Domain Of Poly(A)-Binding Protein In Complex
           With The Binding Region Of Paip2 gi|288563118|pdb|3KUT|A
           Chain A, Crystal Structure Of The Mlle Domain Of
           Poly(a)-binding Protein In Complex With The Binding
           Region Of Paip2 gi|288563119|pdb|3KUT|B Chain B, Crystal
           Structure Of The Mlle Domain Of Poly(a)-binding Protein
           In Complex With The Binding Region Of Paip2
           gi|289526807|pdb|3KTP|A Chain A, Structural Basis Of
           Gw182 Recognition By Poly(a)-binding Protein
           gi|289526809|pdb|3KTR|A Chain A, Structural Basis Of
           Ataxin-2 Recognition By Poly(A)-Binding
           gi|295982345|pdb|3KUI|A Chain A, Crystal Structure Of
           C-Terminal Domain Of Pabpc1 In Complex Binding Region Of
           Erf3a gi|295982347|pdb|3KUJ|A Chain A, Crystal Structure
           Of C-Terminal Domain Of Pabpc1 In Complex With Binding
           Region Of Erf3a gi|317455449|pdb|3PKN|A Chain A, Crystal
           Structure Of Mlle Domain Of Poly(A) Binding Protein In
           Complex With Pam2 Motif Of La-Related Protein 4 (Larp4)
          Length = 88

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 41/81 (50%), Positives = 50/81 (61%)
 Frame = +2

Query: 44  GQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGMXXXXXXXXXXXXXX 223
           G  GS LT +MLA+APP++QKQMLGERLFPL+Q + P LAGKITGM              
Sbjct: 1   GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60

Query: 224 XXXXXXXKADEAISVLRQHNA 286
                  K DEA++VL+ H A
Sbjct: 61  SPESLRSKVDEAVAVLQAHQA 81


>gb|EAX07261.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
           CRA_a [Homo sapiens]
          Length = 115

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 43/97 (44%), Positives = 56/97 (57%)
 Frame = +2

Query: 5   AAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGMX 184
           +++ P AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q +   LAGKITGM 
Sbjct: 6   SSSRPTAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 65

Query: 185 XXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                               K DEA++VL+ H+A  E
Sbjct: 66  LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKE 102


>ref|XP_007257637.1| PREDICTED: polyadenylate-binding protein 4-like isoform X2
           [Astyanax mexicanus]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/95 (46%), Positives = 56/95 (58%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           P A   A P+  + GQ+   LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 520 PIALQQAQPAVHVQGQE--PLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 577

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNA 286
                                K +EA++VL+ H A
Sbjct: 578 LLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQA 612


>ref|XP_007257636.1| PREDICTED: polyadenylate-binding protein 4-like isoform X1
           [Astyanax mexicanus]
          Length = 635

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/95 (46%), Positives = 56/95 (58%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           P A   A P+  + GQ+   LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 525 PIALQQAQPAVHVQGQE--PLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 582

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNA 286
                                K +EA++VL+ H A
Sbjct: 583 LLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQA 617


>ref|XP_007067653.1| PREDICTED: polyadenylate-binding protein 4 isoform X2 [Chelonia
           mydas]
          Length = 614

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 505 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 564

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 565 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 602


>ref|XP_007067652.1| PREDICTED: polyadenylate-binding protein 4 isoform X1 [Chelonia
           mydas]
          Length = 629

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 520 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 579

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 580 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 617


>ref|XP_006139196.1| PREDICTED: polyadenylate-binding protein 4 [Pelodiscus sinensis]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 521 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 580

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 581 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 618


>ref|XP_005302176.1| PREDICTED: polyadenylate-binding protein 4 isoform X2 [Chrysemys
           picta bellii] gi|530625260|ref|XP_005302177.1|
           PREDICTED: polyadenylate-binding protein 4 isoform X3
           [Chrysemys picta bellii]
           gi|530625262|ref|XP_005302178.1| PREDICTED:
           polyadenylate-binding protein 4 isoform X4 [Chrysemys
           picta bellii]
          Length = 559

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 450 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 509

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 510 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 547


>ref|XP_005302175.1| PREDICTED: polyadenylate-binding protein 4 isoform X1 [Chrysemys
           picta bellii]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 521 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 580

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 581 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 618


>ref|XP_005239828.1| PREDICTED: polyadenylate-binding protein 4 isoform X2 [Falco
           peregrinus]
          Length = 614

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 505 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 564

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 565 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 602


>ref|XP_005239827.1| PREDICTED: polyadenylate-binding protein 4 isoform X1 [Falco
           peregrinus] gi|541953566|ref|XP_005433097.1| PREDICTED:
           polyadenylate-binding protein 4 [Falco cherrug]
          Length = 630

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   PAAALPAAPSGVLPGQQGSQLTTAMLAAAPPEQQKQMLGERLFPLVQQLQPELAGKITGM 181
           PA     AP   +  Q    LT +MLAAAPP++QKQMLGERLFPL+Q + P LAGKITGM
Sbjct: 521 PAVQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 580

Query: 182 XXXXXXXXXXXXXXXXXXXXXKADEAISVLRQHNALPE 295
                                K +EA++VL+ H A  E
Sbjct: 581 LLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKE 618