BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00041800
         (817 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007045880.1| Uncharacterized protein TCM_011547 [Theobrom...    81   9e-21
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]         102   2e-19
ref|XP_007038598.1| Uncharacterized protein TCM_015097 [Theobrom...    99   1e-18
ref|XP_007049961.1| Uncharacterized protein TCM_003331 [Theobrom...    99   2e-18
ref|XP_004301673.1| PREDICTED: uncharacterized protein LOC101299...    91   7e-16
ref|XP_004289598.1| PREDICTED: uncharacterized protein LOC101312...    89   2e-15
emb|CAN72897.1| hypothetical protein VITISV_003776 [Vitis vinifera]    87   7e-15
emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]    86   2e-14
emb|CAN78921.1| hypothetical protein VITISV_011350 [Vitis vinifera]    86   2e-14
emb|CAN62410.1| hypothetical protein VITISV_018838 [Vitis vinifera]    86   2e-14
emb|CAN79562.1| hypothetical protein VITISV_020822 [Vitis vinifera]    85   3e-14
emb|CAN79085.1| hypothetical protein VITISV_027044 [Vitis vinifera]    85   4e-14
dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica G...    84   5e-14
ref|XP_007045222.1| RNA-directed DNA polymerase (Reverse transcr...    82   2e-13
ref|XP_007050559.1| RNA-directed DNA polymerase (Reverse transcr...    82   2e-13
emb|CBL94129.1| putative reverse transcriptase (RNA-dependent DN...    82   3e-13
emb|CAE04479.3| OSJNBa0029L02.20 [Oryza sativa Japonica Group]         80   7e-13
emb|CAE04993.2| OSJNBb0093G06.1 [Oryza sativa Japonica Group]          79   3e-12
gb|ABG65999.1| retrotransposon protein, putative, unclassified [...    77   6e-12
gb|AAM74403.1|AC120497_3 Putative retroelement [Oryza sativa Jap...    77   6e-12

>ref|XP_007045880.1| Uncharacterized protein TCM_011547 [Theobroma cacao]
           gi|508709815|gb|EOY01712.1| Uncharacterized protein
           TCM_011547 [Theobroma cacao]
          Length = 390

 Score = 80.9 bits (198), Expect(2) = 9e-21
 Identities = 40/84 (47%), Positives = 56/84 (66%)
 Frame = +1

Query: 64  PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
           P  NGQAEA ++ LL++LS MVH+  +     LP+ALWAY+TF    TK TPFSL+YG +
Sbjct: 252 PKGNGQAEATNKTLLKVLSRMVHEEPKMWHDALPVALWAYRTFKCEPTKVTPFSLVYGTE 311

Query: 244 AVLLIEIKILLARIVAASELSTED 315
           A+L  EI +  AR+   +EL  ++
Sbjct: 312 AMLPAEILVPSARLALDAELDNDN 335



 Score = 46.6 bits (109), Expect(2) = 9e-21
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +3

Query: 324 KMA*LESLEEKQRADEDNVNRYWKCMTTTYEKLVKIRRFKRGDLVLQTSNHLRR 485
           +M  LE+LEE++   + N+  Y + ++  Y KLVK R F+ GDLVL+ + H+RR
Sbjct: 337 RMLELEALEERRDRAKKNLLVYQRRLSRAYGKLVKRRNFEEGDLVLRAAEHIRR 390


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score =  102 bits (253), Expect = 2e-19
 Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 4/196 (2%)
 Frame = +1

Query: 55   AILPTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMY 234
            A  P +NG AEA ++ ++++L   V  + R     L   LWAY+T  R ST+ATPFSL+Y
Sbjct: 994  AYYPPANGLAEAFNKTIVKLLKKFVSKSRRDWDERLGECLWAYRTTVRTSTRATPFSLVY 1053

Query: 235  GIDAVLLIEIKILLARIVAASELSTEDEGKRWLNWSH---*KRSNEQTKTMLIDTGSA*Q 405
            G +AVL +EI+I   R+   + L+ E++ +R L        KR   Q +  L     + +
Sbjct: 1054 GCEAVLPLEIQIPSLRVAITTGLTEEEKHQRRLQELEALDDKRLQAQQQIELYQARIS-K 1112

Query: 406  QHTKNWLRFVVSKGG-I*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG 582
             + K     +  KG  +   K    +  +   KF P WE PF++ +   N  Y+L   EG
Sbjct: 1113 AYNKKVKERIFKKGDLVLANKRPMVMTHKTRGKFNPKWEGPFVIESVYSNGAYRLINQEG 1172

Query: 583  *ELNKPINGKWLKMYF 630
              L  PINGK+LK YF
Sbjct: 1173 DRLMMPINGKFLKRYF 1188


>ref|XP_007038598.1| Uncharacterized protein TCM_015097 [Theobroma cacao]
           gi|508775843|gb|EOY23099.1| Uncharacterized protein
           TCM_015097 [Theobroma cacao]
          Length = 321

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 64/188 (34%), Positives = 98/188 (52%)
 Frame = +1

Query: 64  PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
           P  NGQAEA ++ LL++LS MVH+  +     LP+ALWAY+T  R  TKATPFSL+YG +
Sbjct: 133 PKGNGQAEATNKTLLKVLSRMVHEEPKMWYDALPVALWAYRTSKREPTKATPFSLVYGTE 192

Query: 244 AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
           A+L  EI +  AR+   +EL  ++     L     +R +   K + +      + + K  
Sbjct: 193 AMLPAEILVPSARLALDAELDNDNLRMLELEALE-ERRDRAKKNLSVYQRRLSRAYDKLV 251

Query: 424 LRFVVSKGGI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELNKPI 603
            R    +G +          G  + KF+P WE P+IV    ++ Y KL   +   +  PI
Sbjct: 252 KRRNFEEGDLVLRAAEHIRRGTPSSKFSPKWEGPYIVHEVNESGYCKLINPKNNAITAPI 311

Query: 604 NGKWLKMY 627
           N +++K Y
Sbjct: 312 NFQYIKKY 319


>ref|XP_007049961.1| Uncharacterized protein TCM_003331 [Theobroma cacao]
           gi|508702222|gb|EOX94118.1| Uncharacterized protein
           TCM_003331 [Theobroma cacao]
          Length = 242

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 64/188 (34%), Positives = 96/188 (51%)
 Frame = +1

Query: 64  PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
           P  NGQAEA ++ LL++LS MVH+  +     LP+ALWAY+T  R  TKATPFSL+YG +
Sbjct: 54  PKGNGQAEATNKTLLKVLSRMVHEEPKMWHDALPVALWAYRTSKREPTKATPFSLVYGTE 113

Query: 244 AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
           AVL  EI +   R+    EL  ++     L     +R +   K + +      + + K  
Sbjct: 114 AVLPAEILVSSVRLALDDELDNDNLRMLELEALE-ERRDRAKKNLSVYQRRLSRAYDKLV 172

Query: 424 LRFVVSKGGI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELNKPI 603
            R    +G +          G  + KF+P WE P+IV    ++ Y KL   +   +  PI
Sbjct: 173 KRRNFEEGDLVLRTAEHIRRGTPSYKFSPKWEGPYIVHEVNESGYCKLINPKNNTITAPI 232

Query: 604 NGKWLKMY 627
           N +++K Y
Sbjct: 233 NFQYIKKY 240


>ref|XP_004301673.1| PREDICTED: uncharacterized protein LOC101299390 [Fragaria vesca
            subsp. vesca]
          Length = 2533

 Score = 90.5 bits (223), Expect = 7e-16
 Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 4/193 (2%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            PT+NGQAEA ++VL  IL  MV  N R     LP ALWAY+T  R +T  TP+SL+YG +
Sbjct: 2342 PTANGQAEAFNKVLGNILKKMVSRNKRDWHERLPEALWAYRTTVRTATGCTPYSLVYGSE 2401

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKR----WLNWSH*KRSNEQTKTMLIDTGSA*QQH 411
            AVL +EI++   RI  A++L+  DE  R     L     KR   Q K  +     A   +
Sbjct: 2402 AVLPLEIQLPSPRI--ATQLANPDENARVRLAELEALDEKRLVVQQKLEIYQAQVAGAFN 2459

Query: 412  TKNWLRFVVSKGGI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*EL 591
             K   R       +   +    +  +   KF P WE P+++        Y+L+   G  +
Sbjct: 2460 KKVKSRSFKVGDLVLTLRRPIIVTRQSKGKFEPKWEGPYVITKVFSKGAYELSNANGDCI 2519

Query: 592  NKPINGKWLKMYF 630
               +NGK++K ++
Sbjct: 2520 YSCVNGKFVKKFY 2532


>ref|XP_004289598.1| PREDICTED: uncharacterized protein LOC101312495 [Fragaria vesca
           subsp. vesca]
          Length = 373

 Score = 89.0 bits (219), Expect = 2e-15
 Identities = 44/85 (51%), Positives = 62/85 (72%)
 Frame = +1

Query: 64  PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
           P  NGQAEA ++ L+R+LS MVH+       HLP  LWAY+T PR++T  +P+SL+YG +
Sbjct: 243 PQGNGQAEATNKTLIRMLSKMVHEYKGGWSTHLPDVLWAYRTSPRSATGFSPYSLVYGSE 302

Query: 244 AVLLIEIKILLARIVAASELSTEDE 318
           AVLL+EI ILLAR++A ++L  + E
Sbjct: 303 AVLLVEIMILLARVLAVNDLEWDAE 327


>emb|CAN72897.1| hypothetical protein VITISV_003776 [Vitis vinifera]
          Length = 959

 Score = 87.0 bits (214), Expect = 7e-15
 Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 1/190 (0%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP  LWAY+T P   T  TPF+L YG+D
Sbjct: 771  PQSNGQAEATNKTLITTLKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMD 830

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA +     E  R L+W+   R N   +  ++D       H    
Sbjct: 831  AVIPTEIGLPTIRTNAAKQSDANMELGRNLDWTDEVRENAAIR--MVDYKQRASAHYNRK 888

Query: 424  LRFVVSKGG-I*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELNKP 600
            +R    K G +   K+   +    A KF   WE P+IV  A +N  Y L  ++G  L +P
Sbjct: 889  VRPRSFKNGTLVLRKVFENITEVGAGKFQANWEGPYIVSKASNNGAYHLQKLDGTPLLRP 948

Query: 601  INGKWLKMYF 630
             N   LK Y+
Sbjct: 949  WNVSNLKQYY 958


>emb|CAN84035.1| hypothetical protein VITISV_016995 [Vitis vinifera]
          Length = 965

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 64/190 (33%), Positives = 88/190 (46%), Gaps = 1/190 (0%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP  LWAY+T P   T  TPF+L YG+D
Sbjct: 777  PQSNGQAEATNKTLINALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALTYGMD 836

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA +     E  R L+W+   R  E     ++D       H    
Sbjct: 837  AVIPTEIGLPTIRTNAAKQEDANTELGRNLDWADEVR--ESATIRMVDYQQRASTHYNRK 894

Query: 424  LRFVVSKGG-I*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELNKP 600
            +R    K G +   K+        A KF   WE P+IV  A +N  Y L  ++G  L +P
Sbjct: 895  VRPRNFKNGTLVLRKVFENTAEIGAGKFQANWEGPYIVSKANENGAYHLQKLDGTPLLRP 954

Query: 601  INGKWLKMYF 630
             N   LK Y+
Sbjct: 955  WNASNLKQYY 964


>emb|CAN78921.1| hypothetical protein VITISV_011350 [Vitis vinifera]
          Length = 1000

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 66/192 (34%), Positives = 89/192 (46%), Gaps = 3/192 (1%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP  LW Y+T P   T  TPF+L YG+D
Sbjct: 812  PQSNGQAEATNKTLINALKKRLEQAKGKWVEELPGVLWTYRTTPGQPTGNTPFALAYGMD 871

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA +  T  E  R L+W+   R  E     ++D       H    
Sbjct: 872  AVIPTEIGLPTIRTDAAKQSDTNMELGRNLDWTDEVR--ESAAIRMVDYQQRASAHYNRK 929

Query: 424  LRFVVSKGGI*CYKLA---TTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
            +R    K G    +     TT  G  A KF   WE P+IV  A +N  Y L  ++G  L 
Sbjct: 930  VRPRSFKNGTLVLRKVFENTTEMG--AGKFQANWEGPYIVSKASNNGAYHLQKLDGTPLL 987

Query: 595  KPINGKWLKMYF 630
            +P N   LK Y+
Sbjct: 988  RPWNVSNLKQYY 999


>emb|CAN62410.1| hypothetical protein VITISV_018838 [Vitis vinifera]
          Length = 890

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 4/193 (2%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP ALWAY+T P   T  TPF+L YG+D
Sbjct: 702  PQSNGQAEATNKTLITALKKRLEQAKGKWVEELPGALWAYRTTPERPTGNTPFALAYGMD 761

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA +     +  R L W     ++E  ++  I   +  Q+ + ++
Sbjct: 762  AVIPTEIGLPTIRTEAAKQDDANTDLGRNLGW-----ADEVRESAAIRMANYQQRASAHY 816

Query: 424  LRFV----VSKGGI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*EL 591
             R V       G +   K+      + A KF   WE P+I+  + +N  Y L  ++G  L
Sbjct: 817  NRKVRPRSFKNGTLVLRKVFENTAEKEAGKFQANWEGPYIISKSSENGVYHLQNLDGTPL 876

Query: 592  NKPINGKWLKMYF 630
             +P N   LK Y+
Sbjct: 877  LRPWNASNLKQYY 889


>emb|CAN79562.1| hypothetical protein VITISV_020822 [Vitis vinifera]
          Length = 1027

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 67/192 (34%), Positives = 89/192 (46%), Gaps = 3/192 (1%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP  LWAY+T P   T  TPF+L YG+D
Sbjct: 839  PQSNGQAEATNKTLITALKKRLEQAKGKWVEELPGILWAYRTTPGRPTGNTPFALAYGMD 898

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA++     E  R L+W+   R  E     + D       H    
Sbjct: 899  AVIPTEIGLPTIRTNAANQSDANMELGRNLDWADEVR--ESAAIRMADYQQRASAHYNRK 956

Query: 424  LRFVVSKGGI*CYKLA---TTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
            +R    K G    +     TT  G  A KF   WE P+IV  A DN  Y L  ++G  L 
Sbjct: 957  VRPRSFKNGTLVLRKVFENTTEVG--AGKFQANWEGPYIVSKANDNGAYHLQKLDGTPLL 1014

Query: 595  KPINGKWLKMYF 630
            +P N   LK Y+
Sbjct: 1015 RPWNVSNLKQYY 1026


>emb|CAN79085.1| hypothetical protein VITISV_027044 [Vitis vinifera]
          Length = 1000

 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 66/192 (34%), Positives = 88/192 (45%), Gaps = 3/192 (1%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P SNGQAEA ++ L+  L   +     +    LP  LWAY+T P   T  TPF+L YG+D
Sbjct: 812  PQSNGQAEATNKTLINALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMD 871

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNW 423
            AV+  EI +   R  AA +     E +R L+W+   R  E     + D       H    
Sbjct: 872  AVIPTEIGLPTIRTDAAKQSDANIEFRRNLDWTDEVR--ESAAIRMADYQQRASAHYNRK 929

Query: 424  LRFVVSKGGI*CYKLA---TTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
            +R    K G    +     TT  G  A KF   WE P+IV  A  N  Y L  ++G  L 
Sbjct: 930  VRPRSFKNGTLVLRKVFENTTEVG--AGKFQANWEGPYIVSKANGNGAYHLQKLDGTPLL 987

Query: 595  KPINGKWLKMYF 630
            +P N   LK Y+
Sbjct: 988  RPWNVSNLKQYY 999


>dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica Group]
          Length = 2876

 Score = 84.3 bits (207), Expect = 5e-14
 Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 6/196 (3%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRH-HLPLALWAYQTFPRASTKATPFSLMYGI 240
            P +NG AEA ++ L +IL   V D HR+  H  L  ALWAY+   R  T+ATP+SL+YG 
Sbjct: 2684 PQANGMAEAFNKTLGKILKKTV-DKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGN 2742

Query: 241  DAVLLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKN 420
            +AVL +EI++   R+    EL T+DE  R L +       E+    L +     Q   + 
Sbjct: 2743 EAVLPLEIQLPSLRVAIHDEL-TKDEQIR-LRFQELDAVEEERLGALQNLELYRQNMVRA 2800

Query: 421  WLRFV---VSKGG--I*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG* 585
            + + V   V + G  +   +    +  +   KF P WE P+++  A D   Y+L   +G 
Sbjct: 2801 YDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGS 2860

Query: 586  ELNKPINGKWLKMYFL 633
            +   PING++LK YF+
Sbjct: 2861 QPMPPINGRFLKKYFV 2876


>ref|XP_007045222.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
            [Theobroma cacao] gi|508709157|gb|EOY01054.1|
            RNA-directed DNA polymerase (Reverse transcriptase),
            Ribonuclease H [Theobroma cacao]
          Length = 1047

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P  NG  EA ++ + RI+  M  D ++     LP AL AY+T  R ST ATPFSL+YG++
Sbjct: 858  PKMNGAVEAANKNIKRIIEKMT-DIYKDWHEKLPFALHAYRTTVRTSTGATPFSLVYGME 916

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLN--WSH*KRSNEQTKTMLIDTGSA*QQHTK 417
            AVL IE++I   R++   +L    E   W+N  +       E+  T L       Q + K
Sbjct: 917  AVLPIEVEIPSLRVLKEVQL----EEAEWVNARYEQLNLIEEKRLTALCHG----QLYQK 968

Query: 418  NWLRFVVSKG-------GI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMV 576
              +R    K        G    K     + +   K+TP WE PF+V  A       LA +
Sbjct: 969  RMMRAYDKKAHSRQFREGELVLKRILPNQHDLRGKWTPNWEGPFVVKKAFSGGALILAEM 1028

Query: 577  EG*ELNKPINGKWLKMYF 630
            +G E + P+N   +K YF
Sbjct: 1029 DGREFSNPVNADAVKKYF 1046


>ref|XP_007050559.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
            [Theobroma cacao] gi|508702820|gb|EOX94716.1|
            RNA-directed DNA polymerase (Reverse transcriptase),
            Ribonuclease H [Theobroma cacao]
          Length = 642

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 65/198 (32%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
 Frame = +1

Query: 64   PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
            P  NG  EA ++ + RI+  M  D ++     LP AL AY+T  R ST ATPFSL+YG++
Sbjct: 453  PKMNGAVEAANKNIKRIIEKMT-DIYKDWHEKLPFALHAYRTTVRTSTGATPFSLVYGME 511

Query: 244  AVLLIEIKILLARIVAASELSTEDEGKRWLN--WSH*KRSNEQTKTMLIDTGSA*QQHTK 417
            AVL IE++I   R++   +L    E   W+N  +       E+  T L       Q + K
Sbjct: 512  AVLPIEVEIPSLRVLKEVQL----EEAEWVNARYEQLNLIEEKRLTALCHG----QLYQK 563

Query: 418  NWLRFVVSKG-------GI*CYKLATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLAMV 576
              +R    K        G    K     + +   K+TP WE PF+V  A       LA +
Sbjct: 564  RMMRAYDKKAHSRQFREGELVLKRILPNQHDLRGKWTPNWEGPFVVKKAFSGGALILAEM 623

Query: 577  EG*ELNKPINGKWLKMYF 630
            +G E + P+N   +K YF
Sbjct: 624  DGREFSNPVNADAVKKYF 641


>emb|CBL94129.1| putative reverse transcriptase (RNA-dependent DNA polymerase)
           domain containing protein [Malus domestica]
          Length = 446

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 66/199 (33%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
 Frame = +1

Query: 64  PTSNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGID 243
           P SN QAEA +++L+ I+  MV D+  +   +L   LWAY+T  RA T  TP++L +G D
Sbjct: 134 PQSNDQAEASNKILVNIIKRMVIDSPEKWHENLGNTLWAYRTSKRAGTGTTPYALTFGQD 193

Query: 244 AVLLIEIKILLARIVAASELSTED------EGKRWLNWSH*KRSNEQTKTMLIDTGSA*Q 405
           A+L +EI +   RI     L +E+      +G   L+ +  +  N+      I  G    
Sbjct: 194 AMLPVEINVSSVRIQNQFGLHSEEYIEAMCQGIEDLDAARIEALNQ------IQEGKRVV 247

Query: 406 QHTKN-WLRFVVSKGGI*CYK----LATTLEGE*APKFTPTWEWPFIVCAAIDNEYYKLA 570
               N  ++    K G   +K    L   L G    K++PTWE PFI+   +D   Y LA
Sbjct: 248 ARAYNKKVKMKSFKEGDLVWKTVLPLGAQLRG--FGKWSPTWEGPFIISRVLDRGGYYLA 305

Query: 571 MVEG*ELNKPINGKWLKMY 627
            +EG     PIN  +LK Y
Sbjct: 306 DLEGNRHKHPINVNFLKKY 324


>emb|CAE04479.3| OSJNBa0029L02.20 [Oryza sativa Japonica Group]
          Length = 1518

 Score = 80.5 bits (197), Expect = 7e-13
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 5/192 (2%)
 Frame = +1

Query: 70   SNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGIDAV 249
            +NGQAE+ ++ LL+++   + ++ ++    L  ALWA++     +TK TPF L+YG +AV
Sbjct: 1322 ANGQAESSNKTLLKLVKKKIEEHPKRWHEVLSEALWAHRISKHGATKVTPFELVYGKEAV 1381

Query: 250  LLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNWLR 429
            L +E+ +   R +   +LS+ED   + L   +     ++    L +     ++  K + +
Sbjct: 1382 LSVEVNLGSLRYIKQDDLSSED--YKTLMGDNLDEVIDKRLRALEEIEKEKKRVAKAYNK 1439

Query: 430  FVVSK---GGI*CYKLATTL--EGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
             V  K    G   +K    L    +   K++P+WE P+ VC  +    Y L  ++G    
Sbjct: 1440 RVKGKLFQVGDLVWKTIFPLGTRSKEFGKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQ 1499

Query: 595  KPINGKWLKMYF 630
            + INGK+LK YF
Sbjct: 1500 RAINGKYLKQYF 1511


>emb|CAE04993.2| OSJNBb0093G06.1 [Oryza sativa Japonica Group]
          Length = 574

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 5/192 (2%)
 Frame = +1

Query: 70  SNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGIDAV 249
           +NGQAE+ ++ LL+++   + ++ ++    +  ALWA++     + K TPF L+YG +AV
Sbjct: 378 ANGQAESSNKTLLKLVKKKIEEHPKRWHEVISEALWAHRISKHGAIKVTPFELVYGQEAV 437

Query: 250 LLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNWLR 429
           L +E+ +   R +   +LS+ED   + L   +     ++    L +     ++  K + +
Sbjct: 438 LPVEVNLGSLRYIKQDDLSSED--YKTLMGDNLDEVIDKRLKALEEIEKEKKRVAKAYNK 495

Query: 430 FVVSK---GGI*CYKLATTL--EGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
            V +K    G   +K    L        K++P+WE P+ VC  +    Y L  ++G  L 
Sbjct: 496 RVKAKLFQVGDLVWKTILPLGTRSREFGKWSPSWEGPYRVCGIVRGNTYFLETLQGEHLQ 555

Query: 595 KPINGKWLKMYF 630
           + INGK+LK YF
Sbjct: 556 RAINGKYLKKYF 567


>gb|ABG65999.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1604

 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 5/192 (2%)
 Frame = +1

Query: 70   SNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGIDAV 249
            +NGQAE+ ++ LL+++   + +  ++    L  ALWA++     +TK TPF L+YG +AV
Sbjct: 1408 ANGQAESSNKTLLKLVKKKIEEYPKRWHEVLFEALWAHRISKHGATKVTPFELVYGQEAV 1467

Query: 250  LLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNWLR 429
            L +E+ +   R V   +LS+ED   + L   +     ++    L +     ++  K + +
Sbjct: 1468 LPVEVNLGSLRNVKKDDLSSED--YKTLMGDNLDEVIDKRLKALEEIEKEKKRVAKAYNK 1525

Query: 430  FVVSK---GGI*CYKLATTL--EGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
             V +K    G   +K    L    +   K++P+WE P+ VC  +    Y L  ++G    
Sbjct: 1526 RVKAKLFQVGDLVWKTIFPLGTRSKEFGKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQ 1585

Query: 595  KPINGKWLKMYF 630
            + INGK+LK YF
Sbjct: 1586 RAINGKYLKKYF 1597


>gb|AAM74403.1|AC120497_3 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1844

 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 5/192 (2%)
 Frame = +1

Query: 70   SNGQAEAMSRVLLRILS*MVHDNHRQSRHHLPLALWAYQTFPRASTKATPFSLMYGIDAV 249
            +NGQAE+ ++ LL+++   + +  ++    L  ALWA++     +TK TPF L+YG +AV
Sbjct: 1648 ANGQAESSNKTLLKLVKKKIEEYPKRWHEVLFEALWAHRISKHGATKVTPFELVYGQEAV 1707

Query: 250  LLIEIKILLARIVAASELSTEDEGKRWLNWSH*KRSNEQTKTMLIDTGSA*QQHTKNWLR 429
            L +E+ +   R V   +LS+ED   + L   +     ++    L +     ++  K + +
Sbjct: 1708 LPVEVNLGSLRNVKKDDLSSED--YKTLMGDNLDEVIDKRLKALEEIEKEKKRVAKAYNK 1765

Query: 430  FVVSK---GGI*CYKLATTL--EGE*APKFTPTWEWPFIVCAAIDNEYYKLAMVEG*ELN 594
             V +K    G   +K    L    +   K++P+WE P+ VC  +    Y L  ++G    
Sbjct: 1766 RVKAKLFQVGDLVWKTIFPLGTRSKEFGKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQ 1825

Query: 595  KPINGKWLKMYF 630
            + INGK+LK YF
Sbjct: 1826 RAINGKYLKKYF 1837