BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00041147
         (644 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]      96   1e-17
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    91   3e-16
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    88   2e-15
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...    82   1e-13
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    81   3e-13
ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764...    80   5e-13
ref|XP_006482658.1| PREDICTED: cytochrome P450 89A2-like [Citrus...    79   9e-13
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    79   2e-12
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...    78   2e-12
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]              78   2e-12
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]               78   2e-12
emb|CAN79574.1| hypothetical protein VITISV_017342 [Vitis vinifera]    77   3e-12
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]              76   8e-12
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    76   1e-11
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               74   5e-11
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    74   5e-11
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    71   2e-10
ref|NP_175044.1| DNAse I-like superfamily protein [Arabidopsis t...    71   2e-10
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    71   2e-10
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    71   2e-10

>gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]
          Length = 381

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
 Frame = +1

Query: 76  EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWAT 255
           +EE+F+R KSR+ WL  GDRN RFF++S  +  A+N I+ ++ N GE +         A 
Sbjct: 133 DEEAFWRNKSRIQWLTYGDRNIRFFHASTKNRRAKNKILSIQNNLGEEVFGNKEISKEAL 192

Query: 256 RFYSKMFQNS-SPNVSFQIPFNSKFIEE--NVHILLNHVDKRQNL*FFSLQGIKLRA-RW 423
           R++S++F +S   N+   +   ++ + +  N ++  +   +   +  FS+   +      
Sbjct: 193 RYFSEIFTSSLQGNIQDSLGNINRVVSDECNAYLSRDVTAEEVRISVFSIGATRAPGPDG 252

Query: 424 IWYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALC 603
           +    +  +    G   +     +F  G+   D+N T LC+IPK  N   +++F+PIALC
Sbjct: 253 LTASFYQTYWDIVGPAVVEEVRHFFNTGEFYSDLNHTNLCLIPKITNPITMKDFRPIALC 312

Query: 604 NFVYKILSN*LAL 642
           N +YKI+S  L+L
Sbjct: 313 NVMYKIISKILSL 325


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
 Frame = +1

Query: 19  PMDRVQEAEALKVNNAQLDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMEL 198
           P DR + A   K  + + + EE F+++KSR+ W+R GDRN+++F+++  +  A+N I +L
Sbjct: 312 PFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKL 371

Query: 199 ETNQG-ELIIDEDSSRAWATRFYSKMF------------QNSSPNVSFQIPFNSKFIEEN 339
              +G E   DED  R  A  ++ K+F            +N +P VS Q+         N
Sbjct: 372 IDEEGREWTSDEDLGRV-AEAYFKKLFASEDVGYTVEELENLTPLVSDQM---------N 421

Query: 340 VHILLNHVDKRQNL*FFSLQGIKLRARWIWYG-IFHLFLGYCGEECL*CSYRYFRHGKML 516
            ++L     +      FS+   K        G ++  F    G++       +FR G + 
Sbjct: 422 NNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIE 481

Query: 517 KDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKILSN*LA 639
           + +N T +C+IPK   A+++ +F+PI+LCN +YK++   +A
Sbjct: 482 EGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMA 522


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
 Frame = +1

Query: 79   EESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATR 258
            EE F +KKS++ WL  GD+N++ F+ ++ +  A+N I E++   G +    D  +A+A R
Sbjct: 761  EEKFLKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAER 820

Query: 259  FYSKMFQ---NSSPNVSFQ-----IPFNSKFIEENVHILLNHVDKRQNL--*FFSLQGIK 408
            F+ +  Q   N    V+       +PF      E  H LL  V   + +    FS+   K
Sbjct: 821  FFREFLQLIPNEYEGVTMADLQDLLPFR---CSETEHELLTRVVTAEEIKKVLFSMPNDK 877

Query: 409  LRA-RWIWYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEF 585
                       F       G E +     +F  G + K +N T+L +IPK++ AK ++++
Sbjct: 878  SPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDY 937

Query: 586  KPIALCNFVYKILSN*LA 639
            +PI+ CN +YK++S  +A
Sbjct: 938  RPISCCNVIYKVISKIIA 955


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
 Frame = +1

Query: 10  QRQPMDRVQEAEALKVNNAQLDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGI 189
           QR   D+++  E     N  L +EE ++R++SR  WL+EGDRN+++F+S  ++   +N I
Sbjct: 287 QRMNGDQIRRIE--NQINGMLMDEEIYWRQRSRAEWLKEGDRNTKYFHSKASARRRKNKI 344

Query: 190 MELETNQGELIIDEDSSRAWATRFYSKMFQNSSPN----------VSFQIPFN------S 321
             +E + G+   D+         ++  +F  SSPN          +S ++  N       
Sbjct: 345 WGIENSHGQWTEDQREVEKEFCEYFQNLFTTSSPNQSQIQDALDGISPKVTTNMNHQLEE 404

Query: 322 KFIEENVHILLNHVDKRQNL*FFSLQGIKLRARWIWYGIFHLFLGYCGEECL*CSYRYFR 501
            F EE +   L+ +   +      L     +    W  +    +G C             
Sbjct: 405 PFTEEEIVEALHQMSPTKAPGPDGLPAAFFQKH--WQTVRSSVIGTC--------MHILN 454

Query: 502 HGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKILSN*LA 639
            G  L  +N T + +IPK    K++ EF+PI+LCN +Y+I++  +A
Sbjct: 455 EGGNLSALNHTFIALIPKTTKPKKVTEFRPISLCNVIYRIVAKTIA 500


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 8/195 (4%)
 Frame = +1

Query: 79  EESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATR 258
           EE F  +KSRV WL+ GD N+ FF+  + +  A N I  L    G  I + D  +     
Sbjct: 346 EERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVD 405

Query: 259 FYSKMFQNSSPNVSF----QIPFNSKF-IEENVHILLNHVDKRQNL*--FFSLQGIKLRA 417
           F+ ++F +SS  +S     QI   ++F  +EN   LL       ++   FF+L   K   
Sbjct: 406 FFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPG 465

Query: 418 RWIWYG-IFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPI 594
              +    F       G   +     +FR G++L   N+T + ++PK+ NA R+ EF+PI
Sbjct: 466 PDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPI 525

Query: 595 ALCNFVYKILSN*LA 639
           + CN +YK++S  LA
Sbjct: 526 SCCNAIYKVISKLLA 540


>ref|XP_004963470.1| PREDICTED: uncharacterized protein LOC101764448 [Setaria italica]
          Length = 1051

 Score = 80.1 bits (196), Expect = 5e-13
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 4/194 (2%)
 Frame = +1

Query: 70   LDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAW 249
            L +EE   +++SR+ WL+EGDRN+ FF +        N I  L+   G L   ++     
Sbjct: 600  LAKEECMEQQRSRIQWLKEGDRNTAFFQAKSRERAKNNRIHALKREDGSLASTQEELEVT 659

Query: 250  ATRFYSKMFQNSS---PNVSFQIPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIKLRAR 420
            A  FY+K+F       P             E N  +      +      F +   K    
Sbjct: 660  AMEFYTKLFTRQEVLDPGPVIDCVPTRVTTEMNEFLTKPFTPEEVKAALFMMGPNKAPGP 719

Query: 421  -WIWYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIA 597
              +  G F       G+  +     +   G+M + VN+T L +IPK ++ + +++F+PI+
Sbjct: 720  DGLTAGFFQFHWEAVGQNVMDAVLHFLNGGRMPESVNSTTLVLIPKVKHPQEMKQFRPIS 779

Query: 598  LCNFVYKILSN*LA 639
            LCN +YKI S  LA
Sbjct: 780  LCNVIYKICSKILA 793


>ref|XP_006482658.1| PREDICTED: cytochrome P450 89A2-like [Citrus sinensis]
          Length = 809

 Score = 79.3 bits (194), Expect = 9e-13
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
 Frame = +1

Query: 70   LDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAW 249
            L +EE  + +KSR  WL +GDRN+ +F+    +   RN I  ++   GE I+D +  +  
Sbjct: 571  LTQEEILWLQKSRKEWLIQGDRNTAYFHQKTLARRRRNRITTIQNANGEWIVDNEIIKQH 630

Query: 250  ATRFYSKMFQNSSPNVSFQ-------IPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIK 408
            AT F+S ++  +S  + F+        P     +   +   +   + RQ +  FS++ +K
Sbjct: 631  ATAFFSTLY--TSETLDFRPYPVRGCFPILDAALTHGLMAPIEDNEIRQTI--FSMKPLK 686

Query: 409  ------LRARWI---WYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEE 561
                  L A +    W+ + H F  +            F    +LKD+N TLL +IPK +
Sbjct: 687  APGVDGLHAIFYQSQWHIVGHSFCKFIKNS--------FSSASILKDINTTLLVLIPKVD 738

Query: 562  NAKRLEEFKPIALCNFVYKILSN*LA 639
            +   L+ ++PI+LC   YK +S  +A
Sbjct: 739  HPVNLKMYRPISLCTVAYKTISKIVA 764


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 50/197 (25%), Positives = 101/197 (51%), Gaps = 10/197 (5%)
 Frame = +1

Query: 79  EESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATR 258
           EE F +++S++ WL  GDRN++ F+ ++ +  A+N I E+  + G +   E+  +  A  
Sbjct: 241 EEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEH 300

Query: 259 FYSKMFQ---NSSPNVSFQ-----IPFNSKFIEENVHILLNHVDKRQ-NL*FFSLQGIKL 411
            + +  Q   N    ++ +     +P+     + +  +L NHV   + +   FS+   K 
Sbjct: 301 HFREFLQLIPNDFEGIAVEELQDLLPYRCS--DSDKEMLTNHVSAEEIHKVVFSMPNDKS 358

Query: 412 RARWIWYGIFHLFL-GYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFK 588
                +   F+       G E +     +F  G + K +N+T+L +IPK++ AK +++++
Sbjct: 359 PGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYR 418

Query: 589 PIALCNFVYKILSN*LA 639
           PI+ CN +YK++S  +A
Sbjct: 419 PISCCNVLYKVISKIIA 435


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 1152

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
 Frame = +1

Query: 70  LDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAW 249
           L ++++F++++SRV WL EGD N++FF+   ++   +N +  L    G    DE      
Sbjct: 113 LHKKQTFWQQRSRVLWLAEGDLNTKFFHQRASNRKKKNTLKGLFNEDGVWCNDECEMEEI 172

Query: 250 ATRFYSKMFQNSSPNVSFQ-IPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIKLRARWI 426
             R+Y K+F +S+P +  Q + F ++ I E+ +  LN     +                 
Sbjct: 173 ILRYYKKLFTSSNPQLREQDLSFVTEVISEDANRRLNGTISEEE---------------- 216

Query: 427 WYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCN 606
                  F    G + +     +    ++L+++N T + +IPK ++ + + + +PI+LCN
Sbjct: 217 -------FWNVVGTDVVAAVREFLNSKELLREINCTWVTLIPKVKSPEYVTQLRPISLCN 269

Query: 607 FVYKILSN*LA 639
            +YK+ S  LA
Sbjct: 270 VIYKLGSKVLA 280


>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
 Frame = +1

Query: 76  EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWAT 255
           EEE+++++KSR  WLR G+RNS++F++++  N  R  I +L+   G +   E +    A 
Sbjct: 294 EEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAA 353

Query: 256 RFYSKMFQNSSPN-----VSFQIPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIKLRAR 420
            ++  +F++S+P+      S  +P  S+ + E++   ++  + ++ +  FS++       
Sbjct: 354 AYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAV--FSIKPASAPGP 411

Query: 421 WIWYGI-FHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIA 597
                + F  +    G +      ++F  G M  + N T LC+IPK ++   + + +PI+
Sbjct: 412 DGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPIS 471

Query: 598 LCNFVYKILSN*LA 639
           LC+ +YKI+S  +A
Sbjct: 472 LCSVLYKIISKIMA 485


>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 6/194 (3%)
 Frame = +1

Query: 76  EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWAT 255
           EEE+++++KSR  WLR G+RNS++F++++  N  R  I +L+   G +   E +    A 
Sbjct: 297 EEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAA 356

Query: 256 RFYSKMFQNSSPN-----VSFQIPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIKLRAR 420
            ++  +F++S+P+      S  +P  S+ + E++   ++  + ++ +  FS++       
Sbjct: 357 AYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAV--FSIKPASAPGP 414

Query: 421 WIWYGI-FHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPIA 597
                + F  +    G +      ++F  G M  + N T LC+IPK ++   + + +PI+
Sbjct: 415 DGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPIS 474

Query: 598 LCNFVYKILSN*LA 639
           LC+ +YKI+S  +A
Sbjct: 475 LCSVLYKIISKIMA 488


>emb|CAN79574.1| hypothetical protein VITISV_017342 [Vitis vinifera]
          Length = 1367

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
 Frame = +1

Query: 46   ALKVNNAQLDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELII 225
            A K   + + +EE F+ +KSR  WL+EGD N+RFF+    ++I RN + +L+ N G    
Sbjct: 495  ARKAYKSWVIKEEIFWXQKSRELWLKEGDNNTRFFHRMANAHIRRNWLSKLKVN-GCWHS 553

Query: 226  DEDSSRAWATRFYSKMFQN------SSPNVSFQIPFNSK-------FIEENVHILLNHV- 363
            +E++ R      + +++Q       S   +SF    NS+       F+EE V   L  + 
Sbjct: 554  EENNLRNSVVGAFQELYQEEEGWRPSVDGISFMRLDNSEAEGLENPFLEEVVLAALTDLG 613

Query: 364  -DKRQNL*FFSLQGIKLRARWI--WYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNAT 534
             DK      F++      A W+  W  +    +G+  E        +   G+ +K +NAT
Sbjct: 614  KDKAPGSDGFTM------AFWLFGWDVVKFEIMGFFRE--------FHERGRFVKSLNAT 659

Query: 535  LLCIIPKEENAKRLEEFKPIALCNFVYKILSN*LA 639
             L ++PK+  A+ L++FKPI+L   +YK+ +  LA
Sbjct: 660  FLVLVPKKGGAENLKDFKPISLVGSLYKLFAKVLA 694


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
 Frame = +1

Query: 49  LKVNNAQLDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIID 228
           +++  A +DEE+ +Y+K SR  W++ GD NS++F++      ARN I+ L    G+   +
Sbjct: 173 IRLKEAYIDEEQYWYQK-SRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAE 231

Query: 229 EDSSRAWATRFYSKMFQNSSP-NVSFQIPFNSKFIEENVH---------------ILLNH 360
           +   +  A  ++  +F  S+P N++  +      I + ++               + L H
Sbjct: 232 DKDVQHIAVSYFETLFNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMH 291

Query: 361 VDKRQNL*FFSLQGIKLRARWIWYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLL 540
            +K        +  +  +  W    +  LFL             + + G   K +N T +
Sbjct: 292 PEKAPGP--DGMTALFFQKPWATIKMDMLFL----------VNSFLQDGVFDKQLNTTNI 339

Query: 541 CIIPKEENAKRLEEFKPIALCNFVYKILS 627
           C+IPK E   R+ E +PI+LCN  YKI+S
Sbjct: 340 CLIPKTERPTRMTELRPISLCNVGYKIIS 368


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
 Frame = +1

Query: 49  LKVNNAQLDEEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIID 228
           L++  A  DEE+ +Y+K SR  W++ GD NS+FF++      ARN I  L    G   I+
Sbjct: 107 LRLKEAYRDEEQYWYQK-SRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIE 165

Query: 229 EDSSRAWATRFYSKMFQNSSPNVSFQIPFNSKFIEENVHILLNHVDKRQNL*FFSLQGIK 408
           +D  +  A  ++  +F  ++P V     F+    E  V I     D+  +L        +
Sbjct: 166 DDDIQNIAVSYFQNLFTTANPQV-----FDEALGEVQVLI----TDRINDLLTADATECE 216

Query: 409 LRARWIWY---------GIFHLFL----GYCGEECL*CSYRYFRHGKMLKDVNATLLCII 549
           +RA              G+  LF          + L     + + G   K +N T +C+I
Sbjct: 217 VRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLI 276

Query: 550 PKEENAKRLEEFKPIALCNFVYKILS 627
           PK E   R+ E +PI+LCN  YK++S
Sbjct: 277 PKTERPTRMTELRPISLCNVGYKVIS 302


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 10/192 (5%)
 Frame = +1

Query: 82  ESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATRF 261
           ESF+R+KSR+ WL EGD N+RFF+ ++ ++ A N I  L  + G  + + D  +     +
Sbjct: 391 ESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAY 450

Query: 262 YSKMFQNSSPNVS-FQI-------PFN-SKFIEENVHILLNHVDKRQNL*FFSLQGIKLR 414
           YS +    S NV+ F +       PF    F+   +  + +  +  Q L  FS+   K  
Sbjct: 451 YSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVL--FSMPRNKAP 508

Query: 415 ARWIWYGIFHLFLGYCGEECL*CSYR-YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKP 591
               +   F +      +  +  + R +F  G + +  NAT + +IPK   A RL +F+P
Sbjct: 509 GPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRP 568

Query: 592 IALCNFVYKILS 627
           +A C  +YK+++
Sbjct: 569 VACCTTIYKVIT 580


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 10/192 (5%)
 Frame = +1

Query: 82  ESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATRF 261
           ESF+R+KSR+ WL EGD N+RFF+ ++ ++ A N I  L  + G  + + D  +     +
Sbjct: 348 ESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAY 407

Query: 262 YSKMFQNSSPNVS-FQI-------PFN-SKFIEENVHILLNHVDKRQNL*FFSLQGIKLR 414
           YS +    S NV+ F +       PF    F+   +  + +  +  Q L  FS+   K  
Sbjct: 408 YSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVL--FSMPRNKAP 465

Query: 415 ARWIWYGIFHLFLGYCGEECL*CSYR-YFRHGKMLKDVNATLLCIIPKEENAKRLEEFKP 591
               +   F +      +  +  + R +F  G + +  NAT + +IPK   A RL +F+P
Sbjct: 466 GPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRP 525

Query: 592 IALCNFVYKILS 627
           +A C  +YK+++
Sbjct: 526 VACCTTIYKVIT 537


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
 Frame = +1

Query: 22   MDRVQEAEALKVNNAQLD------EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARN 183
            M  V   E   +++ Q +      +EE ++++KSR  W++EGDRN+ FF++   +  + N
Sbjct: 689  MSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVN 748

Query: 184  GIMELETNQGELIIDEDSSRAWATRFYSKMFQNSS------------PNVSFQI--PFNS 321
             ++ ++  +G +   +      A  F++K+++++             P V+ QI      
Sbjct: 749  RLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTK 808

Query: 322  KFIEENVHILLNHVDKRQNL*FFSLQGIKLRARWIWYGIFHLFLGYCGEECL*CSYRYFR 501
               +  ++  + H+   +      L     ++ W             G + +     +FR
Sbjct: 809  DLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCW----------EIVGPDVIKEVKIFFR 858

Query: 502  HGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKILS 627
               M + +N T +C+IPK  N + L +++PIALCN +YKI+S
Sbjct: 859  TSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIIS 900


>ref|NP_175044.1| DNAse I-like superfamily protein [Arabidopsis thaliana]
            gi|332193872|gb|AEE31993.1| DNAse I-like superfamily
            protein [Arabidopsis thaliana]
          Length = 626

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 16/199 (8%)
 Frame = +1

Query: 82   ESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMELETNQGELIIDEDSSRAWATRF 261
            ESFYR+KSR+ WL++GD N+RFF+  I +N A+N I  L  +    + +    +     +
Sbjct: 432  ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491

Query: 262  YSKMFQNSSPNVSFQIPFNSKFIEENVHILLNHV----------DKRQNL*FFSLQGIK- 408
            Y+ +  + S  ++   P + + I++      N            DK      F++   K 
Sbjct: 492  YTHLLGSDSDILT---PDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKA 548

Query: 409  -----LRARWIWYGIFHLFLGYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKR 573
                   A + W   F        +  +     +FR G +LK  NAT + +IPK     +
Sbjct: 549  PGPDSFTAEFFWESWF-----VVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQ 603

Query: 574  LEEFKPIALCNFVYKILSN 630
            L  F+P++ C  VYKI+++
Sbjct: 604  LSMFRPVSCCTVVYKIITD 622


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
 Frame = +1

Query: 22   MDRVQEAEALKVNNAQLD------EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARN 183
            M  V   E   +++ Q +      +EE ++++KSR  W++EGDRN+ FF++   +  + N
Sbjct: 669  MSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVN 728

Query: 184  GIMELETNQGELIIDEDSSRAWATRFYSKMFQNSS------------PNVSFQI--PFNS 321
             ++ ++  +G +   +      A  F++K+++++             P V+ QI      
Sbjct: 729  RLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTK 788

Query: 322  KFIEENVHILLNHVDKRQNL*FFSLQGIKLRARWIWYGIFHLFLGYCGEECL*CSYRYFR 501
               +  ++  + H+   +      L     ++ W             G + +     +FR
Sbjct: 789  DLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCW----------EIVGPDVIKEVKIFFR 838

Query: 502  HGKMLKDVNATLLCIIPKEENAKRLEEFKPIALCNFVYKILS 627
               M + +N T +C+IPK  N + L +++PIALCN +YKI+S
Sbjct: 839  TSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIIS 880


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 7/195 (3%)
 Frame = +1

Query: 76  EEESFYRKKSRV*WLREGDRNSRFFYSSIASNIARNGIMEL-ETNQGELIIDEDSSRAWA 252
           EEE F+R KSR  W+  GD+NS+FF +++ +N   N +  L + N  E  ++ +  +  A
Sbjct: 60  EEEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKI-A 118

Query: 253 TRFYSKMFQNSSPNVSFQI--PFNSKFIEENVHILLNHVDKRQNL*FFSLQGIKLRARWI 426
             F+  +F +S P+    +   FN +  E+    L   V++++   + ++  I   +   
Sbjct: 119 VTFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEI--YKAVFSINAESAPG 176

Query: 427 WYGIFHLFL----GYCGEECL*CSYRYFRHGKMLKDVNATLLCIIPKEENAKRLEEFKPI 594
             G   LF          + +     +F+ G + +D N T LC+IPK     R+ + +PI
Sbjct: 177 PDGFTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPI 236

Query: 595 ALCNFVYKILSN*LA 639
           +LC+ +YKI+S  L+
Sbjct: 237 SLCSVMYKIISKILS 251