BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00040319
         (531 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008963387.1| RNA polymerase beta subunit (chloroplast) [S...    56   6e-06
gb|AAZ03996.1| RNA polymerase beta chain [Yucca schidigera]            56   6e-06
gb|AAZ03991.1| RNA polymerase beta chain [Acorus americanus]           56   6e-06
ref|YP_319757.1| RNA polymerase beta subunit [Acorus calamus] gi...    56   6e-06
sp|Q5QA72.1|RPOB_ACOGR RecName: Full=DNA-directed RNA polymerase...    56   6e-06
gb|AFB18345.1| RNA polymerase beta subunit, partial [Neoastelia ...    56   6e-06
gb|AEX94328.1| RNA polymerase beta subunit (chloroplast) [Manfre...    56   6e-06
ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea] ...    56   6e-06
gb|ADD31192.1| RNA polymerase beta subunit protein [Meliosma aff...    56   6e-06
ref|YP_004564095.1| RNA polymerase beta subunit [Nelumbo nucifer...    56   6e-06
ref|YP_001586174.1| RNA polymerase beta subunit [Acorus american...    56   6e-06
sp|Q3V542.2|RPOB_ACOCL RecName: Full=DNA-directed RNA polymerase...    56   6e-06
ref|YP_784378.1| RNA polymerase beta subunit [Drimys granadensis...    56   6e-06
ref|YP_009026873.1| RNA polymerase beta subunit [Magnolia tripet...    55   8e-06
gb|AHH24325.1| RNA polymerase beta subunit (chloroplast) [Japono...    55   8e-06
ref|YP_008993684.1| RNA polymerase beta subunit (chloroplast) [M...    55   8e-06
ref|YP_008993856.1| RNA polymerase beta subunit (chloroplast) [M...    55   8e-06
ref|YP_008993770.1| RNA polymerase beta subunit (chloroplast) [M...    55   8e-06
ref|YP_008993598.1| RNA polymerase beta subunit (chloroplast) [M...    55   8e-06
ref|YP_008993512.1| RNA polymerase beta subunit (chloroplast) [M...    55   8e-06

>ref|YP_008963387.1| RNA polymerase beta subunit (chloroplast) [Sedum sarmentosum]
           gi|402797522|gb|AFQ99054.1| RNA polymerase beta subunit
           (chloroplast) [Sedum sarmentosum]
          Length = 1068

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPA LIWKTG DMQE+K++
Sbjct: 68  DAVYESLTYSSELYVPAALIWKTGRDMQEQKIF 100


>gb|AAZ03996.1| RNA polymerase beta chain [Yucca schidigera]
          Length = 1069

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQ+K ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQQKTVF 100


>gb|AAZ03991.1| RNA polymerase beta chain [Acorus americanus]
          Length = 1068

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 65  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 97


>ref|YP_319757.1| RNA polymerase beta subunit [Acorus calamus]
           gi|74381701|emb|CAI53786.1| RNA polymerase beta subunit
           [Acorus calamus]
          Length = 1083

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 80  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 112


>sp|Q5QA72.1|RPOB_ACOGR RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|56122473|gb|AAV74361.1| RpoB [Acorus gramineus]
          Length = 1071

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>gb|AFB18345.1| RNA polymerase beta subunit, partial [Neoastelia spectabilis]
          Length = 1075

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 73  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 105


>gb|AEX94328.1| RNA polymerase beta subunit (chloroplast) [Manfreda virginica]
           gi|372481308|gb|AEX94329.1| RNA polymerase beta subunit
           (chloroplast) [Polianthes sp. Pires 2011-05]
          Length = 1068

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQ+K ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQQKTVF 100


>ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea]
           gi|224474126|gb|ACN49315.1| RNA polymerase beta subunit
           [Nelumbo lutea] gi|383286884|gb|AFH01533.1| RNA
           polymerase beta subunit (chloroplast) [Nelumbo lutea]
          Length = 1070

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>gb|ADD31192.1| RNA polymerase beta subunit protein [Meliosma aff. cuneifolia Moore
           333]
          Length = 1070

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>ref|YP_004564095.1| RNA polymerase beta subunit [Nelumbo nucifera]
           gi|224474214|gb|ACN49400.1| RNA polymerase beta subunit
           [Nelumbo nucifera] gi|290489618|gb|ADD31193.1| RNA
           polymerase beta subunit protein [Nelumbo nucifera]
           gi|383286789|gb|AFH01439.1| RNA polymerase beta subunit
           (chloroplast) [Nelumbo nucifera]
           gi|519666904|gb|AGO98516.1| RNA polymerase beta subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 1070

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>ref|YP_001586174.1| RNA polymerase beta subunit [Acorus americanus]
           gi|182676548|sp|A9LYH7.1|RPOB_ACOAM RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|160369845|gb|ABX38736.1| RNA polymerase beta subunit
           [Acorus americanus]
          Length = 1083

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 80  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 112


>sp|Q3V542.2|RPOB_ACOCL RecName: Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
          Length = 1071

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>ref|YP_784378.1| RNA polymerase beta subunit [Drimys granadensis]
           gi|122164449|sp|Q06H05.1|RPOB_DRIGR RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|112032654|gb|ABH88289.1| RNA polymerase beta subunit
           [Drimys granadensis]
          Length = 1071

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTIF 100


>ref|YP_009026873.1| RNA polymerase beta subunit [Magnolia tripetala]
           gi|608608396|gb|AHW51950.1| RNA polymerase beta subunit
           [Magnolia tripetala]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109


>gb|AHH24325.1| RNA polymerase beta subunit (chloroplast) [Japonolirion osense]
          Length = 1070

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 68  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 100


>ref|YP_008993684.1| RNA polymerase beta subunit (chloroplast) [Magnolia salicifolia]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109


>ref|YP_008993856.1| RNA polymerase beta subunit (chloroplast) [Magnolia sprengeri]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109


>ref|YP_008993770.1| RNA polymerase beta subunit (chloroplast) [Magnolia sinica]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109


>ref|YP_008993598.1| RNA polymerase beta subunit (chloroplast) [Magnolia odora]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109


>ref|YP_008993512.1| RNA polymerase beta subunit (chloroplast) [Magnolia liliifera]
          Length = 1079

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 385 DVVYKSFTYSSDLYVPAGLIWKTG*DMQEKKLY 287
           D VY+S TYSS+LYVPAGLIWKTG DMQE+ ++
Sbjct: 77  DAVYESLTYSSELYVPAGLIWKTGRDMQEQTVF 109