BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00038437
         (434 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   126   4e-27
gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus ...   102   6e-20
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]    97   3e-18
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...    96   5e-18
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    95   1e-17
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]         93   3e-17
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    93   3e-17
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    92   8e-17
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...    92   1e-16
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     91   1e-16
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    91   2e-16
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    91   2e-16
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    91   2e-16
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      91   2e-16
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    90   3e-16
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]            90   3e-16
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    90   4e-16
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      89   5e-16
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    89   5e-16
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...    89   8e-16

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  126 bits (316), Expect = 4e-27
 Identities = 67/144 (46%), Positives = 93/144 (64%)
 Frame = -3

Query: 432  KLEFEAPMISVKYVETDDISPGDLDGEDSGTNEVEAPIVDSPLQPDSIAASRPRRESRKP 253
            ++EFE  ++      T D +  + + +     E E P  +S  Q   IA  R RR+ +KP
Sbjct: 718  QVEFEPKVVIPTRNTTSDSAMAEEESD-----EEEVPTQESQQQSAPIAVRRQRRDIQKP 772

Query: 252  ARFTDMVAYALPIIDDDIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEK 73
            +RF DMVAYALP++DD IP+TY EA+ +SES  W  AM+EEMQSL KN+TW+L +  K K
Sbjct: 773  SRFMDMVAYALPVVDD-IPSTYPEAIMSSESGNWAGAMEEEMQSLKKNKTWKLAQLPKGK 831

Query: 72   KAIGCKWIYTKKEGSPGMDNVRFK 1
            KAIGCKW++ KKE     ++VR+K
Sbjct: 832  KAIGCKWVFAKKEEFSNKEDVRYK 855


>gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
          Length = 1309

 Score =  102 bits (254), Expect = 6e-20
 Identities = 56/144 (38%), Positives = 80/144 (55%)
 Frame = -3

Query: 432 KLEFEAPMISVKYVETDDISPGDLDGEDSGTNEVEAPIVDSPLQPDSIAASRPRRESRKP 253
           ++E E  +I +K V+T        +G+   +++ E     +  Q +SIA S+P+R  +KP
Sbjct: 19  QVELETSVIPIKTVQTIPT-----EGDSDESSDEEDATTPATTQQESIATSKPKRVIKKP 73

Query: 252 ARFTDMVAYALPIIDDDIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEK 73
           AR+ +MVAYALP+IDD IP TY+EA                            V+S + K
Sbjct: 74  ARYCNMVAYALPVIDDGIPYTYKEA----------------------------VQSVERK 105

Query: 72  KAIGCKWIYTKKEGSPGMDNVRFK 1
           K IGCKW+Y KKEG+PG DN+RFK
Sbjct: 106 KTIGCKWVYAKKEGNPGKDNIRFK 129


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
 Frame = -3

Query: 384 DDISPGDLDGEDSGTNEVEAPIVDSPLQPDSIAASRPRRESRKPAR--FTDMVAYALPII 211
           D++     D ED   N  ++   D   Q  SIA  +PRR  + P R  F D+V+YAL   
Sbjct: 100 DEVELETHDIEDHARNARKSSSEDQ--QHHSIAIDKPRRTIKPPTRYGFEDLVSYALITS 157

Query: 210 DDDIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIYTKKEG 31
             D P T++EA+ N E   W  AM EE+Q L+KNQTW+LV+  + K+AIGCKW+Y KKE 
Sbjct: 158 SKD-PITFQEAIHNQEKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEA 216

Query: 30  SPGMDNVRFK 1
               +  +FK
Sbjct: 217 ISKKEGEKFK 226


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
 Frame = -3

Query: 402 VKYVETDDISPGDLDGEDSGTNEVEAPIVDSP--LQPDSIAASRPRRESRKPARFTDM-- 235
           V ++E  + S  + + E    NE + P V+S   L    +A  R RR+   PARFT+   
Sbjct: 443 VTHIEECEESDENDEQEPETVNETD-PTVESEGSLANYQLAKDRVRRQINPPARFTEESG 501

Query: 234 VAYALPIIDD---DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAI 64
           VA+AL +++    + P +Y+EA ++ E L+WK A  EEM SL KN TW+LV     +K I
Sbjct: 502 VAFALVVVESLSLEEPESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKII 561

Query: 63  GCKWIYTKKEGSPGMDNVRFK 1
           GC+W++  K G PG++ VRFK
Sbjct: 562 GCRWLFKLKSGIPGVEPVRFK 582


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
 Frame = -3

Query: 390  ETDDISPGDLDGEDSGTNEVEAPIVDSPLQPDSIAASRPRRES-RKPAR--FTDMVAYAL 220
            E+D   P + D E     ++   +     Q  SIA  RPRR   R P R  F DMV YAL
Sbjct: 723  ESDLKEPEEEDQEPQTETDIPESMPSDIHQ--SIAQDRPRRVGVRPPTRYGFEDMVGYAL 780

Query: 219  PI---IDDDIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWI 49
             +   +D   P+TY+EA+ +S+S +W  AM +EM+SL+KNQTW+LV     +K I CKW+
Sbjct: 781  QVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWV 840

Query: 48   YTKKEGSPGMDNVRFK 1
            + KKEG    + V++K
Sbjct: 841  FKKKEGISPAEGVKYK 856


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
 Frame = -3

Query: 384 DDISPGDLDGEDSGTNEVEAPIVD--SPLQPDSIAASRPRRESRKPARFTDM--VAYALP 217
           ++ S   +D E     +VE P     S L    +A  R RR+   PARFT+   VA+AL 
Sbjct: 2   EEESDESVDEEQEPEPQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALV 61

Query: 216 IIDD---DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIY 46
            ++    + P +Y+EA  N E  +WK A  EEM SL KN TW LV   K++K IGC+W++
Sbjct: 62  TVETLSMEEPQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLF 121

Query: 45  TKKEGSPGMDNVRFK 1
             K G PG++ VR+K
Sbjct: 122 KMKSGIPGVEPVRYK 136


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
 Frame = -3

Query: 420  EAPMISVKYVETDDISPGDLDGEDSGTNEVEAPIVDSPLQ------PDSIAASRPRRESR 259
            E   + V+++ +   +P   + ED   N+ E  I DS           SIA  RP+R  +
Sbjct: 939  EKASVQVEHLISSGHAP---EKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIK 995

Query: 258  KPARFTD---MVAYALPIIDD----DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTW 100
             P R+ +   +VAYAL + ++      P+TY EA+ + +   W  AM +EM+SL KN TW
Sbjct: 996  PPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTW 1055

Query: 99   ELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRFK 1
            ELVK  KEKK I CKWI+ +KEG    D  R+K
Sbjct: 1056 ELVKLPKEKKPIRCKWIFKRKEGISSSDEARYK 1088


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
 Frame = -3

Query: 354 EDSGTNE-VEAPIVDSPLQPDSIAASRPRRES-RKPARFTD--MVAYALPIIDD---DIP 196
           E+S TNE V+    +  L    +A  R RR + R P+RF D   VAYAL   +D   + P
Sbjct: 146 EESETNEEVDGSENEQSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEP 205

Query: 195 TTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIYTKKEGSPGMD 16
            +Y EAM+ S+  +W+ AM EEM S  K+ TW+L++  +++K IGCKWI+  K G PG++
Sbjct: 206 KSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLE 265

Query: 15  NVRFK 1
             R+K
Sbjct: 266 KQRYK 270


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 20/162 (12%)
 Frame = -3

Query: 426  EFEAPMISVKYVETDDISPGDLDGEDSGTNEV-------------EAPIVDSPLQPDSIA 286
            E E  +I +K +  DD +  +  G++S   +              E    D  L+   +A
Sbjct: 728  EVERTLIELKNLSADDENQSE-GGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLLA 786

Query: 285  ASRPRRESRKPARFTD----MVAYALPIIDDDI---PTTYREAMRNSESLEWKKAMDEEM 127
              R RR+ R P RF +    +V +AL + +D     P TY EAMR+ E  +WK+A  EEM
Sbjct: 787  RDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEM 846

Query: 126  QSLYKNQTWELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRFK 1
             S+ KN TW+++   + K+ IGCKWI+ +K G PG++  R+K
Sbjct: 847  DSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYK 888


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
 Frame = -3

Query: 393  VETDDISPGDLDGEDSGTNEVEAPIVD--SPLQPDSIAASRPRRESRKPARFTDM--VAY 226
            V  ++ S   ++ E     +VE P     S L    +A  R RR+   PARFT+   VA+
Sbjct: 774  VSDEEESDESVEEEQEPETQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAF 833

Query: 225  ALPIIDD---DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCK 55
            AL  ++    + P +Y+EA  + E  +WK A  EEM SL KN TW LV   + +K IGC+
Sbjct: 834  ALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCR 893

Query: 54   WIYTKKEGSPGMDNVRFK 1
            W++  K GSPG++ VR+K
Sbjct: 894  WLFKLKSGSPGVEPVRYK 911


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
 Frame = -3

Query: 339 NEVEAPIVDSPLQPDSIAASRPRRESRKPARFTD---MVAYALPIIDD----DIPTTYRE 181
           ++ +A +  SP    SIA  +P+R +R P R+ +   +VAYAL + ++      P+TY E
Sbjct: 599 SQEKASVQQSPKH--SIAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSE 656

Query: 180 AMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRFK 1
           A+ + +   W  AM +EM SL KN TW+LVK  KEKK I CKWI+ +KEG    D  R+K
Sbjct: 657 AIVSDDCNRWITAMHDEMDSLEKNHTWKLVKLPKEKKLIHCKWIFKRKEGMSPTDEARYK 716


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 14/140 (10%)
 Frame = -3

Query: 378  ISPGDLDGEDSGTNEVEAPIVD----SPLQPD---SIAASRPRRESRKPARFTD---MVA 229
            IS G    +++    ++AP+++    S +Q     SIA  +P+R  + P R+ +   +VA
Sbjct: 703  ISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVA 762

Query: 228  YALPI---IDDDI-PTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIG 61
            YAL +   I+ ++ P+TY +A+ + +   W  AM +EM+SL KN TWELVK  KEKK I 
Sbjct: 763  YALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 822

Query: 60   CKWIYTKKEGSPGMDNVRFK 1
            CKWI+ +KEG    D  R+K
Sbjct: 823  CKWIFKRKEGMSPSDEARYK 842


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 14/140 (10%)
 Frame = -3

Query: 378  ISPGDLDGEDSGTNEVEAPIVD----SPLQPD---SIAASRPRRESRKPARFTD---MVA 229
            IS G    +++    ++AP+++    S +Q     SIA  +P+R  + P R+ +   +VA
Sbjct: 740  ISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVA 799

Query: 228  YALPI---IDDDI-PTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIG 61
            YAL +   I+ ++ P+TY +A+ + +   W  AM +EM+SL KN TWELVK  KEKK I 
Sbjct: 800  YALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIR 859

Query: 60   CKWIYTKKEGSPGMDNVRFK 1
            CKWI+ +KEG    D  R+K
Sbjct: 860  CKWIFKRKEGMSPSDEARYK 879


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
 Frame = -3

Query: 420  EAPMISVKYVETDDISPGDLDGEDSGTNEVEAPIVD---------SPLQPDSIAASRPRR 268
            E   + V+++ +   +P   + ED   N+ +AP+++         SP +  SIA  +P+R
Sbjct: 704  EKASVQVEHLISSGHAP---EKEDVAINQ-DAPVIEDSDSSIVHQSPKR--SIAKDKPKR 757

Query: 267  ESRKPARFTD---MVAYALPIID----DDIPTTYREAMRNSESLEWKKAMDEEMQSLYKN 109
              + P R+ +   +VAYAL + +    +  P+TY EA+ + +   W  AM +EM+SL KN
Sbjct: 758  NIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKN 817

Query: 108  QTWELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRFK 1
             TWELVK  KEKK I CKWI+ +KEG    D  R+K
Sbjct: 818  HTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYK 853


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 11/121 (9%)
 Frame = -3

Query: 330  EAPIVDSPLQPDSIAASRPRRESRKPARFTDMV--------AYALPIIDD---DIPTTYR 184
            E P++D      SIAA RPRRE R+P R+ D V        A+AL + ++   + P +Y+
Sbjct: 860  EQPVIDQN-DSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYK 918

Query: 183  EAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRF 4
            EAM + +S +W  +MD+EM SL KNQTWELV   +  K + CKW++  K+G    +  ++
Sbjct: 919  EAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKY 978

Query: 3    K 1
            K
Sbjct: 979  K 979


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
 Frame = -3

Query: 420  EAPMISVKYVETDDISPGDLDGEDSGTNEVEAPIVD---------SPLQPDSIAASRPRR 268
            E   + V+++ +   +P   + ED   N+ +AP+++         SP +  SIA  RP+R
Sbjct: 553  EKASVQVEHLISSGHAP---EKEDVAINQ-DAPVIEDSDSSIVQQSPKR--SIAKDRPKR 606

Query: 267  ESRKPARFTD---MVAYALPIIDD----DIPTTYREAMRNSESLEWKKAMDEEMQSLYKN 109
             ++ P ++ +   +V YAL + ++      P+TY +A+ + +   W  AM +EM+SL KN
Sbjct: 607  NTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWITAMHDEMESLEKN 666

Query: 108  QTWELVKSKKEKKAIGCKWIYTKKEGSPGMDNVRFK 1
             TWELVK  KEKK I CKWI+ +KEG    D  R+K
Sbjct: 667  HTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYK 702


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 47/111 (42%), Positives = 68/111 (61%), Gaps = 11/111 (9%)
 Frame = -3

Query: 330  EAPIVDSPLQPDSIAASRPRRESRKPARFTDMV--------AYALPIIDD---DIPTTYR 184
            E P++D      SIAA RPRRE R+P R+ D V        A+AL + ++   + P +Y+
Sbjct: 1073 EQPVIDQN-DSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYK 1131

Query: 183  EAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIYTKKEG 31
            EAM + +S +W  +MD+EM SL KNQTWELV   +  K + CKW++  K+G
Sbjct: 1132 EAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDG 1182


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 14/140 (10%)
 Frame = -3

Query: 378  ISPGDLDGEDSGTNEVEAPIVD----SPLQPDS---IAASRPRRESRKPARFTD---MVA 229
            IS G    +++     +AP+++    S +Q  S   IA  +P+R  + P R+ +   +VA
Sbjct: 777  ISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVA 836

Query: 228  YALPIIDD----DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIG 61
            YAL + ++      P+TY EA+ + +   W  AM +EM+SL KN TWE VK  KEKK I 
Sbjct: 837  YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIR 896

Query: 60   CKWIYTKKEGSPGMDNVRFK 1
            CKWI+ +KEG    D  R+K
Sbjct: 897  CKWIFKRKEGMSPSDEARYK 916


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 14/140 (10%)
 Frame = -3

Query: 378  ISPGDLDGEDSGTNEVEAPIVD----SPLQPDS---IAASRPRRESRKPARFTD---MVA 229
            IS G    +++     +AP+++    S +Q  S   IA  +P+R  + P R+ +   +VA
Sbjct: 777  ISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVA 836

Query: 228  YALPIIDD----DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIG 61
            YAL + ++      P+TY EA+ + +   W  AM +EM+SL KN TWE VK  KEKK I 
Sbjct: 837  YALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIR 896

Query: 60   CKWIYTKKEGSPGMDNVRFK 1
            CKWI+ +KEG    D  R+K
Sbjct: 897  CKWIFKRKEGMSPSDEARYK 916


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 7/135 (5%)
 Frame = -3

Query: 384 DDISPGDLDGEDSGTNEVEAPIVD--SPLQPDSIAASRPRRESRKPARFTDM--VAYALP 217
           ++ S   ++ E     +VE P     S L    +A  R RRE   PARFT+   VA+AL 
Sbjct: 1   EEESDETVEEEQEPEPQVELPKTQTTSSLAYYQLAKDRERREIHPPARFTEESGVAFALV 60

Query: 216 IIDD---DIPTTYREAMRNSESLEWKKAMDEEMQSLYKNQTWELVKSKKEKKAIGCKWIY 46
            ++    + P +Y+EA  + E  +WK A  EEM SL KN TW LV   +++K IGC+W++
Sbjct: 61  TVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQDRKIIGCRWLF 120

Query: 45  TKKEGSPGMDNVRFK 1
             K G PG++ VR+K
Sbjct: 121 KMKSGIPGVEPVRYK 135