BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00033521
         (1199 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFY98072.1| ORF1 [Ngewotan virus]                                  128   4e-27
gb|AGL80617.1| RNA-dependent RNA polymerase, partial [Plum bark ...   127   9e-27
ref|YP_001552324.1| RNA-dependent RNA polymerase [Plum bark necr...   125   3e-26
gb|AGL80610.1| RNA-dependent RNA polymerase, partial [Plum bark ...   125   5e-26
gb|AFI24684.1| hypothetical protein 1 [Negev virus]                   125   5e-26
gb|AFI24681.1| hypothetical protein 1 [Negev virus]                   125   5e-26
gb|AFI24672.1| hypothetical protein 1 [Negev virus]                   125   5e-26
emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-ass...   123   1e-25
ref|YP_004928118.1| polyprotein [Hibiscus green spot virus] gi|3...   123   2e-25
gb|AFI24678.1| hypothetical protein 1 [Piura virus]                   118   4e-24
ref|YP_008411010.1| RNA-dependent RNA polymerase 1b [Blackberry ...   117   8e-24
gb|AGL80631.1| RNA-dependent RNA polymerase, partial [Plum bark ...   117   1e-23
ref|NP_612605.1| replication protein [Beet virus Q] gi|3549698|e...   115   4e-23
emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing p...   115   4e-23
ref|NP_659020.2| replicase [Sorghum chlorotic spot virus]             115   5e-23
dbj|BAA94803.1| 59-kDa readthrough protein [Sorghum chlorotic sp...   115   5e-23
gb|ACT15363.2| polyprotein 1a/1b [Diodia vein chlorosis virus]        115   5e-23
gb|AGE12747.1| ORF1a/1b [Tomato infectious chlorosis virus]           114   8e-23
gb|AGE12744.1| ORF1a/1b [Tomato infectious chlorosis virus]           114   8e-23
ref|YP_003204952.1| ORF 1a/1b fusion protein [Tomato infectious ...   114   8e-23

>gb|AFY98072.1| ORF1 [Ngewotan virus]
          Length = 2282

 Score =  128 bits (322), Expect = 4e-27
 Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 6/272 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            +Y+  +KR+ KP L   A       Q IV + K   A+F S+FR+I +R   +L P +K 
Sbjct: 1951 QYNFSIKRKPKPNLTVDAASSYLALQTIVYHEKTINAMFCSIFREIKKRVTLSLLPHVKI 2010

Query: 786  AGRLSDDAISEWLTEHLPEVVA---FPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQ 616
               +S +   E L   +P          +EID SKYDKSQ  LA   E  +M++ G+D  
Sbjct: 2011 FCDMSAEEFEEVLMRDIPPTSLSSYLDKLEIDISKYDKSQRELALEFECKLMKRFGVDDD 2070

Query: 615  VSEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            + E++ +++V  +V  K+  L  + +YQ KSG   T +GN ++ M  V + I V ++ + 
Sbjct: 2071 LVELWFNAHVLSQVYDKTTKLSALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSSLELA 2130

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGL-FNLEAKLLTRNVLYFSSGYVVPVGERLYFVPD 262
            +  GDD++  L     G  + A+  GL FNLE K       YF S +++PV  R  F PD
Sbjct: 2131 LFSGDDSL--LYGHSLGQFKNAQHFGLKFNLEIKFFEFEHSYFCSKFLLPVDGRWTFTPD 2188

Query: 261  PLKLLELLGEMGASATTLAERF-ISFQDRVRS 169
            PLK +  LG      +   E + ISF D V++
Sbjct: 2189 PLKFMTKLGRHDLVNSLHVEEYRISFVDIVKN 2220


>gb|AGL80617.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
           pitting-associated virus] gi|500154691|gb|AGL80624.1|
           RNA-dependent RNA polymerase, partial [Plum bark
           necrosis stem pitting-associated virus]
          Length = 525

 Score =  127 bits (319), Expect = 9e-27
 Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 3/269 (1%)
 Frame = -3

Query: 966 KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
           K+  +VK  +K KL+ +A+  L   Q IV + +    LF+S+F+++ ER    L+P +K 
Sbjct: 185 KFKIMVKADMKSKLDGTAETSLPSGQNIVYHRRNVCLLFSSVFQQLTERLKFLLKPNVKL 244

Query: 786 AGRLSDDAISEWLTEH-LPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               S D  ++ L +  + E+ ++   E+D SKYDKSQ    + IE  I ++LGLD ++ 
Sbjct: 245 FHGCSLDDFAQSLCDSAVGELTSYYCAEVDLSKYDKSQNDFTKGIEHEIYRRLGLDTELL 304

Query: 609 EIFEDS-YVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
           +++  S +  +V S S G       Q ++G   T LGN + NM  +   +G +    M  
Sbjct: 305 DLWSASDFSSQVGSTSRGFSLSIGSQRRTGTATTWLGNTVVNMALMARVLGCEKFSSMAF 364

Query: 432 KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
            GDD+I  L      D +++     F  + KL    V YF S + V     L FVPDP+K
Sbjct: 365 SGDDSI--LFHHSPLDLDISNYELHFAFDVKLFRMTVPYFCSKFFVVGSSGLQFVPDPVK 422

Query: 252 LLELLG-EMGASATTLAERFISFQDRVRS 169
           L   LG E     + + ERFISF D  ++
Sbjct: 423 LFVSLGSEKNDEESVMRERFISFLDLTKA 451


>ref|YP_001552324.1| RNA-dependent RNA polymerase [Plum bark necrosis and stem
           pitting-associated virus] gi|158828623|gb|ABW81235.1|
           RNA-dependent RNA polymerase [Plum bark necrosis stem
           pitting-associated virus]
          Length = 524

 Score =  125 bits (315), Expect = 3e-26
 Identities = 85/269 (31%), Positives = 136/269 (50%), Gaps = 3/269 (1%)
 Frame = -3

Query: 966 KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
           ++  +VK  +K KL+ +A+  L   Q IV + +    LF+S+F+++ ER    L+P +K 
Sbjct: 185 RFKIMVKADMKSKLDGTAETSLPSGQNIVYHRRNVCLLFSSVFQQLTERLKFLLKPHVKL 244

Query: 786 AGRLSDDAISEWLTEH-LPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               S D  ++ L +  + ++ ++   E+D SKYDKSQ    + IE  I ++LG+D ++ 
Sbjct: 245 FHGCSLDDFAQSLRDSAVGDLTSYYCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELL 304

Query: 609 EIF-EDSYVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
           E +    +  +V S S G       Q ++G   T LGN + NM  +   +G +N   M  
Sbjct: 305 EYWCASDFSSQVGSTSRGFSLSIGSQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAF 364

Query: 432 KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
            GDD+I  L      D +++     F  + KL    V YF S + V     L FVPDP+K
Sbjct: 365 SGDDSI--LFHHSPLDLDISNYELHFAFDVKLFRMTVPYFCSKFFVVGSSGLNFVPDPVK 422

Query: 252 LLELLG-EMGASATTLAERFISFQDRVRS 169
           L   LG E     + + ERF+SF D  +S
Sbjct: 423 LFVSLGSEKNDDESVMRERFVSFLDLTKS 451


>gb|AGL80610.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
           pitting-associated virus]
          Length = 524

 Score =  125 bits (313), Expect = 5e-26
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 3/269 (1%)
 Frame = -3

Query: 966 KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
           ++  +VK  +K KL+ +A+  L   Q IV + +    LF+S+F+++ ER    L+P +K 
Sbjct: 185 RFKIMVKADMKSKLDGTAEASLPSGQNIVYHRRNICLLFSSVFQQLTERLKFLLKPHVKL 244

Query: 786 AGRLSDDAISEWLTEH-LPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               S D  ++ L +  + ++ ++   E+D SKYDKSQ    + IE  I ++LG+D ++ 
Sbjct: 245 FHGCSLDDFAQSLCDSAVGDLTSYYCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELL 304

Query: 609 EIF-EDSYVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
           + +    +  +V S S G       Q ++G   T LGN + NM  +   +G +N   M  
Sbjct: 305 DYWCASDFSSQVGSTSRGFSLSIGSQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAF 364

Query: 432 KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
            GDD+I  L      D +++     F  + KL    V YF S + V     L FVPDP+K
Sbjct: 365 SGDDSI--LFHHSPLDLDISNYELHFAFDVKLFRMTVPYFCSKFFVVGSSGLNFVPDPVK 422

Query: 252 LLELLG-EMGASATTLAERFISFQDRVRS 169
           L   LG E   + + + ERF+SF D  +S
Sbjct: 423 LFVSLGSEKNDAESVMRERFVSFLDLTKS 451


>gb|AFI24684.1| hypothetical protein 1 [Negev virus]
          Length = 2368

 Score =  125 bits (313), Expect = 5e-26
 Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 6/272 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            +Y+  +KR+ KP L   A       Q IV + K   A+F S+FR+I +R  ++L P +K 
Sbjct: 2037 EYNFSIKRKPKPNLTVDATASYLALQTIVYHEKSINAMFCSIFREIKKRVTSSLLPHVKI 2096

Query: 786  AGRLSDDAISEWLTEHLPE---VVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQ 616
               +S +   E L   +P          +EID SKYDKSQ  LA   E  +M + G+ P 
Sbjct: 2097 FCDMSSEDFEEVLQRDIPPSKLSAVCDKLEIDISKYDKSQRELALEFECKLMLRFGVAPD 2156

Query: 615  VSEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            + E++ +++V  RV  K+  L  + +YQ KSG   T +GN ++ M  V + I V  + + 
Sbjct: 2157 IVELWFNAHVLTRVYDKTTKLKALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSQLELA 2216

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGL-FNLEAKLLTRNVLYFSSGYVVPVGERLYFVPD 262
            +  GDD++  L        + A+  GL FNLE K    +  YF S +++ V +   F PD
Sbjct: 2217 LFSGDDSL--LYGHSLSQFKNAQHFGLKFNLEIKFFEFDKSYFCSKFLLVVNDHWTFTPD 2274

Query: 261  PLKLLELLGEMGASATTLAERF-ISFQDRVRS 169
            PLK +  LG          E + ISF D V++
Sbjct: 2275 PLKFITKLGRHDLVNPLHVEEYRISFVDTVKN 2306


>gb|AFI24681.1| hypothetical protein 1 [Negev virus]
          Length = 2368

 Score =  125 bits (313), Expect = 5e-26
 Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 6/272 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            +Y+  +KR+ KP L   A       Q IV + K   A+F S+FR+I +R  ++L P +K 
Sbjct: 2037 EYNFSIKRKPKPNLTVDATASYLALQTIVYHEKSINAMFCSIFREIKKRVTSSLLPHVKI 2096

Query: 786  AGRLSDDAISEWLTEHLPE---VVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQ 616
               +S +   E L   +P          +EID SKYDKSQ  LA   E  +M + G+ P 
Sbjct: 2097 FCDMSSEDFEEVLQRDIPPSKLSAVCDKLEIDISKYDKSQRELALEFECKLMLRFGVAPD 2156

Query: 615  VSEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            + E++ +++V  RV  K+  L  + +YQ KSG   T +GN ++ M  V + I V  + + 
Sbjct: 2157 IVELWFNAHVLTRVYDKTTKLKALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSQLELA 2216

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGL-FNLEAKLLTRNVLYFSSGYVVPVGERLYFVPD 262
            +  GDD++  L        + A+  GL FNLE K    +  YF S +++ V +   F PD
Sbjct: 2217 LFSGDDSL--LYGHSLSQFKNAQHFGLKFNLEIKFFEFDKSYFCSKFLLVVNDHWTFTPD 2274

Query: 261  PLKLLELLGEMGASATTLAERF-ISFQDRVRS 169
            PLK +  LG          E + ISF D V++
Sbjct: 2275 PLKFITKLGRHDLVNPLHVEEYRISFVDTVKN 2306


>gb|AFI24672.1| hypothetical protein 1 [Negev virus]
          Length = 2368

 Score =  125 bits (313), Expect = 5e-26
 Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 6/272 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            +Y+  +KR+ KP L   A       Q IV + K   A+F S+FR+I +R  ++L P +K 
Sbjct: 2037 EYNFSIKRKPKPNLTVDATASYLALQTIVYHEKSINAMFCSIFREIKKRVTSSLLPHVKI 2096

Query: 786  AGRLSDDAISEWLTEHLPE---VVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQ 616
               +S +   E L   +P          +EID SKYDKSQ  LA   E  +M + G+ P 
Sbjct: 2097 FCDMSSEDFEEVLQRDIPPSKLSAVCDKLEIDISKYDKSQRELALEFECKLMLRFGVAPD 2156

Query: 615  VSEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            + E++ +++V  RV  K+  L  + +YQ KSG   T +GN ++ M  V + I V  + + 
Sbjct: 2157 IVELWFNAHVLTRVYDKTTKLKALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSQLELA 2216

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGL-FNLEAKLLTRNVLYFSSGYVVPVGERLYFVPD 262
            +  GDD++  L        + A+  GL FNLE K    +  YF S +++ V +   F PD
Sbjct: 2217 LFSGDDSL--LYGHSLSQFKNAQHFGLKFNLEIKFFEFDKSYFCSKFLLVVNDHWTFTPD 2274

Query: 261  PLKLLELLGEMGASATTLAERF-ISFQDRVRS 169
            PLK +  LG          E + ISF D V++
Sbjct: 2275 PLKFITKLGRHDLVNPLHVEEYRISFVDTVKN 2306


>emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
          Length = 2866

 Score =  123 bits (309), Expect = 1e-25
 Identities = 85/269 (31%), Positives = 135/269 (50%), Gaps = 3/269 (1%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            ++  +VK  +K KL+ +A+  L   Q IV + +    LF+S+F+++ ER    L+P +K 
Sbjct: 2527 RFKIMVKADMKSKLDATAETSLPSGQNIVYHRRNVCLLFSSVFQQLTERLKFLLKPHVKL 2586

Query: 786  AGRLSDDAISEWLTEH-LPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
                S D  ++ L +  + ++ A+   E+D SKYDKSQ    + IE  I ++LG+  ++ 
Sbjct: 2587 FHGCSWDDFAQSLRDSAVGDLTAYYCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMGTELL 2646

Query: 609  EIF-EDSYVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
            E +    +  +V S S G       Q ++G   T LGN + NM  +  A+G +N   M  
Sbjct: 2647 EYWCASDFSSQVGSTSRGCSLSIGSQRRTGTATTWLGNTVVNMALMARALGCENFSSMAF 2706

Query: 432  KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
             GDD+I  L      D +++     F  + KL    V YF S + V     L FVPD +K
Sbjct: 2707 SGDDSI--LFHHSPLDLDISNYEFHFAFDVKLFRMTVPYFCSKFFVVGSSGLNFVPDAVK 2764

Query: 252  LLELLG-EMGASATTLAERFISFQDRVRS 169
            L   LG E     + + ERF+SF D  +S
Sbjct: 2765 LFVSLGSEKNDDESVMRERFVSFLDLTKS 2793


>ref|YP_004928118.1| polyprotein [Hibiscus green spot virus] gi|353703574|gb|AER13445.1|
            polyprotein [Hibiscus green spot virus]
          Length = 2645

 Score =  123 bits (308), Expect = 2e-25
 Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 6/275 (2%)
 Frame = -3

Query: 963  YDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSA 784
            Y+ I K   K  L   +  E   PQ ++   K   +++  +FR+I +     LR   K  
Sbjct: 2313 YNFITKGNPKVNLTDRSCEEFTAPQTVLFQGKDVNSMYCVIFRRIKKSLLKMLRISGKYF 2372

Query: 783  GRLSDDAI--SEWLTEHLPE--VVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQ 616
                 DAI  +  LT+ +P   V    A+EID SKYDKSQGL+A + E  IM+  G++  
Sbjct: 2373 IYTDMDAIDFAAMLTKKVPPHMVKYSKALEIDISKYDKSQGLIALLFECKIMRWFGVEEH 2432

Query: 615  VSEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            + +++ D ++  RV  +   L F    Q +SG   T+LGN ++ M  +     V+ + + 
Sbjct: 2433 LVQLWFDMHMCSRVDDRHTSLKFEVRLQRRSGDAATLLGNTMFLMAVIAYHYKVEEMDLC 2492

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDP 259
               GDD+++     +  D +    + LFNLE K       +F S +++PVG+R YFVPDP
Sbjct: 2493 AFAGDDSLLIGANHLL-DTDATEFTDLFNLEVKFFRYEYYHFCSKFLIPVGDRWYFVPDP 2551

Query: 258  LKLLELLGEMGASATTLAERF-ISFQDRVRSITRD 157
            +KLL  L           ER+ +S+ D V+    D
Sbjct: 2552 VKLLVKLARCDLRNRVHIERYRVSYMDSVQFFCND 2586


>gb|AFI24678.1| hypothetical protein 1 [Piura virus]
          Length = 2336

 Score =  118 bits (296), Expect = 4e-24
 Identities = 89/279 (31%), Positives = 134/279 (48%), Gaps = 9/279 (3%)
 Frame = -3

Query: 963  YDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSA 784
            Y   +KR+ KP L   A       Q IV + K   A+F S+FR+I  R   +L+  +K  
Sbjct: 2006 YTFSIKRKPKPNLTVDATKSYLALQTIVYHEKPINAMFCSIFREIKSRVTMSLKRHVKIF 2065

Query: 783  GRLSDDAISEWLTEHLPE---VVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQV 613
              +S +   + L   +P          +EID SKYDKSQ  LA   E  +M   G+D  +
Sbjct: 2066 CDMSAEDFEDVLNRDIPPSSLSACIDKLEIDISKYDKSQRELALDFECKLMSYFGVDADI 2125

Query: 612  SEIFEDSYV-GRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMI 436
             E++ +++V   V  K+  +  +  YQ KSG   T +GN ++ M  V + I V  + M +
Sbjct: 2126 VELWFNAHVLTEVYDKTTKMKALIPYQRKSGDASTFIGNTLFLMAVVCDLIPVSELEMAL 2185

Query: 435  AKGDDNIVWLLKEVAGDAEVARIS---GL-FNLEAKLLTRNVLYFSSGYVVPVGERLYFV 268
              GDD++++       D +  R S   GL FNLE K     + YF S +++ V +R  F 
Sbjct: 2186 FSGDDSLLY-----GHDMDRYRDSQHFGLKFNLEIKFFEFELSYFCSKFLLAVRDRWTFT 2240

Query: 267  PDPLKLLELLGEMGASATTLAERF-ISFQDRVRSITRDH 154
            PDP+K +  LG          E + ISF D VR+    H
Sbjct: 2241 PDPVKFMTKLGRHDLVNPLHVEEYRISFVDTVRNYRSYH 2279


>ref|YP_008411010.1| RNA-dependent RNA polymerase 1b [Blackberry vein banding associated
           virus] gi|528899104|gb|AGS48178.1| RNA-dependent RNA
           polymerase 1b [Blackberry vein banding associated virus]
          Length = 545

 Score =  117 bits (294), Expect = 8e-24
 Identities = 83/274 (30%), Positives = 137/274 (50%), Gaps = 2/274 (0%)
 Frame = -3

Query: 966 KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
           KY  +VK  +KPKL+ +  ++    Q IV +    TALF+ +F  + ER    +      
Sbjct: 185 KYTLMVKADVKPKLDDTPLYKYVTGQNIVYHDSCVTALFSCIFTAVVERLKFVVSDNWVF 244

Query: 786 AGRLSDDAISEWLTEHLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSE 607
              +  D++++ ++  L ++ A+   E+D SKYDKSQ  L + +E LI+  LG+D +V +
Sbjct: 245 YHGMDIDSLAQRISADLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLD 304

Query: 606 -IFEDSYVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIAK 430
             F   Y   VS  S  L+     Q +SG   T LGN +     +   +  +    ++  
Sbjct: 305 TFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVS 364

Query: 429 GDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLKL 250
           GDD++++   E+  D + + +S  F  + KL  + V YF S ++V     L+FVPDPLK+
Sbjct: 365 GDDSLIFSRTEL--DIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKM 422

Query: 249 LELLG-EMGASATTLAERFISFQDRVRSITRDHG 151
              LG    A    L E ++S  D    IT++ G
Sbjct: 423 FIKLGVSRVADLDLLHEVYMSMVD----ITKNFG 452


>gb|AGL80631.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
           pitting-associated virus]
          Length = 525

 Score =  117 bits (293), Expect = 1e-23
 Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 3/269 (1%)
 Frame = -3

Query: 966 KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
           ++  +VK  +K KL+ +A+  L   Q IV + +    LF+S+F+++ ER    L+  +K 
Sbjct: 185 RFKIMVKSDMKVKLDGTAETVLPSGQNIVYHKRNICLLFSSVFQQLTERLKFLLKSNVKL 244

Query: 786 AGRLSDDAISEWLTE-HLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               S +A ++ L +  + ++ ++   E+D SKYDKSQ    + IE  I ++L +DP++ 
Sbjct: 245 FHGCSLEAFAQSLQDCAIGDLSSYYCAEVDLSKYDKSQNDFTKAIEHEIYRRLNMDPELL 304

Query: 609 EIFEDS-YVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
           + +  S +  +V S S G       Q ++G   T LGN + NM  +   +   +   M  
Sbjct: 305 DFWAASDFSSQVGSTSRGFSLSIGSQRRTGTATTWLGNTVVNMALMARILDCSSFSCMAF 364

Query: 432 KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
            GDD+I++    +  D +V+     F  + KL    V YF S + V   + L FVPDP+K
Sbjct: 365 SGDDSILFHPSPL--DLDVSNYEIHFAFDVKLFRLTVPYFCSKFFVMGSKGLEFVPDPVK 422

Query: 252 L-LELLGEMGASATTLAERFISFQDRVRS 169
           L + L GE     + + ERF+SF D   S
Sbjct: 423 LFVSLGGEKNDDESVMRERFVSFLDLTAS 451


>ref|NP_612605.1| replication protein [Beet virus Q] gi|3549698|emb|CAA11457.1| unknown
            [Beet virus Q]
          Length = 1818

 Score =  115 bits (288), Expect = 4e-23
 Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 2/266 (0%)
 Frame = -3

Query: 963  YDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSA 784
            Y+ ++K  +KPKL+ S Q E A  Q +V   K   ALF  + +KI ER   AL+P +   
Sbjct: 1491 YNFMIKNDVKPKLDLSPQSEYAALQTVVLPDKIVNALFGPIMKKINERIRFALKPHVIYN 1550

Query: 783  GRLSDDAISEWLTEHLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSEI 604
             R++   +     E L     F +VEID SK+DKS+  L       + +  GLD   + +
Sbjct: 1551 TRMTASELDA-AVEFLDVREEFESVEIDFSKFDKSKTSLHIRAVLELYRMFGLDDLCAYL 1609

Query: 603  FEDSYVGR-VSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIAKG 427
            +E S     V  +  GL+    YQ KSG   T   N     +S++E++ ++  R MI  G
Sbjct: 1610 WEKSQCQTIVKDRVNGLVAHLLYQQKSGNCDTYGSNTWSAALSLIESLPLEKARFMIFGG 1669

Query: 426  DDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLKLL 247
            DD++++  K +A      R++ ++N + K+       F   +++ VGER  F PDP KLL
Sbjct: 1670 DDSLIFFPKRMAIPDPCRRLAAVWNFDCKMFNFENNAFCGKFLIKVGERYRFAPDPYKLL 1729

Query: 246  ELLGEMG-ASATTLAERFISFQDRVR 172
              LG         L+E F S  D  R
Sbjct: 1730 TKLGRKDIKDGKLLSEIFTSVCDNYR 1755


>emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing protein [Haemonchus
            contortus]
          Length = 606

 Score =  115 bits (288), Expect = 4e-23
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 6/270 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            +Y  ++K+  K KL   A  E    Q IV +     A++ S+F+ +FERF   L+P +  
Sbjct: 329  RYTMMIKKEPKNKLEPHAFEEYLPVQNIVYHRPVINAIYGSMFKILFERFRRLLKPNVFC 388

Query: 786  AGRLSDDAISEWLTEHLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSE 607
              + S D +   L  +L     +   EID SK+DKSQ  L    E    ++LG++  ++ 
Sbjct: 389  LLKKSLDELKIHLNTYLLPRQKYQKFEIDFSKFDKSQLGLCFEFENYFFERLGMEKYLNS 448

Query: 606  IFEDSYVGRVSSKSL----GLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMM 439
            ++    +G   S ++    G+  +  YQ KSG   T  GN + +M S+  +  +      
Sbjct: 449  LWR---LGHQKSNAIDFIAGVKALLFYQRKSGDAATAFGNTLISMASIARSTDIRGFICA 505

Query: 438  IAKGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDP 259
               GDD++++   +      V  +S +FNL AK + + V YF S +++   +    +PDP
Sbjct: 506  YFVGDDSLIFYADKRGDKQLVKNLSDIFNLSAKSIQKEVGYFCSTFIIETADGYVPIPDP 565

Query: 258  LKLLELLGE--MGASATTLAERFISFQDRV 175
            LK +E LG    G     L +RFISF + +
Sbjct: 566  LKRVERLGRDLCGVDKQGLKDRFISFAELI 595


>ref|NP_659020.2| replicase [Sorghum chlorotic spot virus]
          Length = 1785

 Score =  115 bits (287), Expect = 5e-23
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 2/267 (0%)
 Frame = -3

Query: 963  YDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSA 784
            Y+ ++K  +KPK++ + Q E A  Q +V   K   ALF  + ++I ER   AL+P +   
Sbjct: 1458 YNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYN 1517

Query: 783  GRLSDDAISEWLTEHLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSEI 604
             R++ D +   + E L     + A EID SK+DKS+  L       + +  GL+  ++ +
Sbjct: 1518 SRMNADELDRTV-EFLDVNKKYNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLEELLAFM 1576

Query: 603  FEDSYVGRVSSKSL-GLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIAKG 427
            +E S    V    L G++    YQ KSG   T   N     ++++E + ++    MI  G
Sbjct: 1577 WEKSQCQTVVKDRLNGIVAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAEFMIFGG 1636

Query: 426  DDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLKLL 247
            DD+++   +EV  +    R++ L+N + KL + N   F   +++ +G+R  F PDP+KL+
Sbjct: 1637 DDSLILFPEEVVVEDPCRRLASLWNFDCKLFSFNHNLFCGKFLLKIGDRYRFSPDPVKLM 1696

Query: 246  ELLGEMG-ASATTLAERFISFQDRVRS 169
              LG         L+E F+S  D  +S
Sbjct: 1697 TKLGRKDIVDGQVLSEIFVSIGDNYKS 1723


>dbj|BAA94803.1| 59-kDa readthrough protein [Sorghum chlorotic spot virus]
          Length = 507

 Score =  115 bits (287), Expect = 5e-23
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 2/267 (0%)
 Frame = -3

Query: 963 YDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSA 784
           Y+ ++K  +KPK++ + Q E A  Q +V   K   ALF  + ++I ER   AL+P +   
Sbjct: 180 YNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYN 239

Query: 783 GRLSDDAISEWLTEHLPEVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSEI 604
            R++ D +   + E L     + A EID SK+DKS+  L       + +  GL+  ++ +
Sbjct: 240 SRMNADELDRTV-EFLDVNKKYNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLEELLAFM 298

Query: 603 FEDSYVGRVSSKSL-GLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIAKG 427
           +E S    V    L G++    YQ KSG   T   N     ++++E + ++    MI  G
Sbjct: 299 WEKSQCQTVVKDRLNGIVAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAEFMIFGG 358

Query: 426 DDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLKLL 247
           DD+++   +EV  +    R++ L+N + KL + N   F   +++ +G+R  F PDP+KL+
Sbjct: 359 DDSLILFPEEVVVEDPCRRLASLWNFDCKLFSFNHNLFCGKFLLKIGDRYRFSPDPVKLM 418

Query: 246 ELLGEMG-ASATTLAERFISFQDRVRS 169
             LG         L+E F+S  D  +S
Sbjct: 419 TKLGRKDIVDGQVLSEIFVSIGDNYKS 445


>gb|ACT15363.2| polyprotein 1a/1b [Diodia vein chlorosis virus]
          Length = 2505

 Score =  115 bits (287), Expect = 5e-23
 Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 6/272 (2%)
 Frame = -3

Query: 954  IVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKSAGRL 775
            +VK  +KPK++TS+    + P  I+         ++ +F +IF+R    L  ++     +
Sbjct: 2186 MVKGDMKPKMDTSSYTTYSPPANIIYYEHVINMFYSPMFLRIFDRIVYCLNSKVVMYSGM 2245

Query: 774  SDDAISEWLTEHLP-EVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVSEIFE 598
            + + ++  +   LP  +  +   EID SK+DKSQG++ +M E LI +    D    E  +
Sbjct: 2246 NLETLASLVQAKLPLPIDQYKTTEIDFSKFDKSQGVIFKMYEELIYKFFKFDSDTYESMK 2305

Query: 597  DSYVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIAKGDDN 418
             S     +    G+      Q ++G+P T L N I  M  ++    +D+I +++  GDD+
Sbjct: 2306 FSEYFCRARSQCGVTTELPAQRRTGSPNTWLSNTIVTMAMLLSQYDLDDIDLLLVSGDDS 2365

Query: 417  IVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLKLLELL 238
            +++  K++   A    I+  F +EAK +T +V YF S Y++     +  +PDP++  E L
Sbjct: 2366 LIFSRKDLGNKAN--EINRDFGMEAKFITNSVPYFCSKYIISDRGEIKVLPDPVRFFEKL 2423

Query: 237  GEMGASA-----TTLAERFISFQDRVRSITRD 157
                  A     T L ERF SF+D ++    D
Sbjct: 2424 SVPMPLADYEGMTMLRERFTSFKDLMQEYNND 2455


>gb|AGE12747.1| ORF1a/1b [Tomato infectious chlorosis virus]
          Length = 2394

 Score =  114 bits (285), Expect = 8e-23
 Identities = 78/277 (28%), Positives = 141/277 (50%), Gaps = 7/277 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            K + +VK   KPK++TS       P  I+   +     F+ +F  +F+R    L  +I  
Sbjct: 2071 KLNLMVKGETKPKMDTSTYESYNAPANIIYYQQVVNLYFSPMFLAVFDRLTYCLNDKIIL 2130

Query: 786  AGRLSDDAISEWLTEHLP-EVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               ++ D +++ +   L  ++  +   EID SK+DKSQG + ++ E L+ +    D    
Sbjct: 2131 YSGMNTDTLAKLIESKLSADLNDYNTTEIDFSKFDKSQGTIFKIYEKLVYELFKFDQDTY 2190

Query: 609  EIFEDS-YVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
            +  E S +  RVSS S G+      Q ++G+P T L N +  +  +M    +++I +++ 
Sbjct: 2191 KNIEMSEHFCRVSSVS-GIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLILV 2249

Query: 432  KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
             GDD++++  +++     V  I+  F +EAKL+  +V YF S Y++    ++  VPDP++
Sbjct: 2250 SGDDSLIFSRRKLPN--VVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVR 2307

Query: 252  LLELLG-----EMGASATTLAERFISFQDRVRSITRD 157
              E L      +   S  +L ER+ISF+D +R    D
Sbjct: 2308 FFEKLSTPVRLDEIDSKLSLRERYISFKDLMRGYDLD 2344


>gb|AGE12744.1| ORF1a/1b [Tomato infectious chlorosis virus]
          Length = 2394

 Score =  114 bits (285), Expect = 8e-23
 Identities = 78/277 (28%), Positives = 141/277 (50%), Gaps = 7/277 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            K + +VK   KPK++TS       P  I+   +     F+ +F  +F+R    L  +I  
Sbjct: 2071 KLNLMVKGETKPKMDTSTYESYNAPANIIYYQQVVNLYFSPMFLAVFDRLTYCLNDKIIL 2130

Query: 786  AGRLSDDAISEWLTEHLP-EVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               ++ D +++ +   L  ++  +   EID SK+DKSQG + ++ E L+ +    D    
Sbjct: 2131 YSGMNTDTLAKLIESKLSADLNDYNTTEIDFSKFDKSQGTIFKIYEKLVYELFKFDQDTY 2190

Query: 609  EIFEDS-YVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
            +  E S +  RVSS S G+      Q ++G+P T L N +  +  +M    +++I +++ 
Sbjct: 2191 KNIEMSEHFCRVSSVS-GIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLILV 2249

Query: 432  KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
             GDD++++  +++     V  I+  F +EAKL+  +V YF S Y++    ++  VPDP++
Sbjct: 2250 SGDDSLIFSRRKLPN--VVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVR 2307

Query: 252  LLELLG-----EMGASATTLAERFISFQDRVRSITRD 157
              E L      +   S  +L ER+ISF+D +R    D
Sbjct: 2308 FFEKLSTPVRLDEIDSKLSLRERYISFKDLMRGYDLD 2344


>ref|YP_003204952.1| ORF 1a/1b fusion protein [Tomato infectious chlorosis virus]
            gi|241992719|gb|ACS73872.1| ORF 1a/1b fusion protein
            [Tomato infectious chlorosis virus]
          Length = 2394

 Score =  114 bits (285), Expect = 8e-23
 Identities = 78/277 (28%), Positives = 141/277 (50%), Gaps = 7/277 (2%)
 Frame = -3

Query: 966  KYDTIVKRRIKPKLNTSAQHELAQPQVIVSNSKKDTALFTSLFRKIFERFDNALRPEIKS 787
            K + +VK   KPK++TS       P  I+   +     F+ +F  +F+R    L  +I  
Sbjct: 2071 KLNLMVKGETKPKMDTSTYESYNAPANIIYYQQVVNLYFSPMFLAVFDRLTYCLNDKIIL 2130

Query: 786  AGRLSDDAISEWLTEHLP-EVVAFPAVEIDSSKYDKSQGLLARMIEALIMQKLGLDPQVS 610
               ++ D +++ +   L  ++  +   EID SK+DKSQG + ++ E L+ +    D    
Sbjct: 2131 YSGMNTDTLAKLIESKLSADLNDYNTTEIDFSKFDKSQGTIFKIYEKLVYELFKFDQDTY 2190

Query: 609  EIFEDS-YVGRVSSKSLGLMFVSAYQMKSGAPQTMLGNLIYNMVSVMEAIGVDNIRMMIA 433
            +  E S +  RVSS S G+      Q ++G+P T L N +  +  +M    +++I +++ 
Sbjct: 2191 KNIEMSEHFCRVSSVS-GIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLILV 2249

Query: 432  KGDDNIVWLLKEVAGDAEVARISGLFNLEAKLLTRNVLYFSSGYVVPVGERLYFVPDPLK 253
             GDD++++  +++     V  I+  F +EAKL+  +V YF S Y++    ++  VPDP++
Sbjct: 2250 SGDDSLIFSRRKLPN--VVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVR 2307

Query: 252  LLELLG-----EMGASATTLAERFISFQDRVRSITRD 157
              E L      +   S  +L ER+ISF+D +R    D
Sbjct: 2308 FFEKLSTPVRLDEIDSKLSLRERYISFKDLMRGYDLD 2344