BLASTX nr result
ID: Akebia27_contig00031665
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia27_contig00031665 (1979 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 435 e-167 emb|CBI34757.3| unnamed protein product [Vitis vinifera] 416 e-162 ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 365 e-150 ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 375 e-148 ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun... 383 e-147 ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr... 367 e-142 ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 366 e-142 ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 366 e-142 ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 382 e-140 ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 382 e-140 gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no... 355 e-139 ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 379 e-137 gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 379 e-137 ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su... 336 e-134 ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su... 332 e-132 ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su... 332 e-132 ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 342 e-132 ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 350 e-132 ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 347 e-131 ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 345 e-130 >ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit 1-like [Vitis vinifera] Length = 1560 Score = 435 bits (1118), Expect(2) = e-167 Identities = 224/368 (60%), Positives = 279/368 (75%), Gaps = 4/368 (1%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYG----NDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQ 168 GTVRNAYG+Q++QFSY + S +E+ D G PVGS++AC+ISEAAYSALDQ Sbjct: 880 GTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQ 939 Query: 169 PISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVL 348 PIS LE SPLLNLK+VLE G +K+T+DRT+SLFLSKKLE+ +G+EY AL VK+HLEK+L Sbjct: 940 PISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLL 999 Query: 349 FSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKN 528 FS++VSTVMI++S QN SPW+CHFHVC+E K+R L SII+AL +C S Sbjct: 1000 FSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAE 1059 Query: 529 PKADLPKLQILSRDCSITDAEKENDGTFCISVAVEISKGSLIPLDTVRDFVVPFLLGSVI 708 K +LP LQI S+DC + D EKE+ FCI+V++ SK S I LDTVRD V+PFLLG+V+ Sbjct: 1060 SKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVV 1118 Query: 709 KGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLI 888 KG+ +KVDILWN P+ S KS SG L L+V+VS +C W +L++A L+IMD+I Sbjct: 1119 KGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMI 1177 Query: 889 DWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFL 1068 DWERSHPDNIHDIF YGIDA KYFL SLKS +SDIGKT+LPEHLLLVA CLS TGEF+ Sbjct: 1178 DWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFV 1237 Query: 1069 GLNARGIS 1092 GLNA+G++ Sbjct: 1238 GLNAKGMA 1245 Score = 184 bits (466), Expect(2) = e-167 Identities = 97/219 (44%), Positives = 133/219 (60%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 +PGSCFI +LDA+AWGK VG+GG FDILYS KGH+L +P D++ +L Sbjct: 1264 SPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLL 1323 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 ++S N+++++P K GA+ + A D +KGC + E++ V R SL+ Sbjct: 1324 GSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLN 1383 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KLS L+ IL K IN LSE DK+ +M AL++HP EK+G G Q+I+V H K+ Sbjct: 1384 DIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYH 1443 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYQ 1837 N+RCF LVRTDGT DFSY KCV GA + + YQ Sbjct: 1444 NTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQ 1482 >emb|CBI34757.3| unnamed protein product [Vitis vinifera] Length = 1359 Score = 416 bits (1069), Expect(2) = e-162 Identities = 217/368 (58%), Positives = 271/368 (73%), Gaps = 4/368 (1%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYG----NDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQ 168 GTVRNAYG+Q++QFSY + S +E+ D G PVGS++AC+ISEAAYSALDQ Sbjct: 749 GTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQ 808 Query: 169 PISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVL 348 PIS LE SPLLNLK+VLE G +K+T+DRT+SLFLSKKLE+ +G+EY AL VK+HLEK+L Sbjct: 809 PISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLL 868 Query: 349 FSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKN 528 FS++VSTVMI++S QN SPW+CHFHVC+E K+R L SII+AL +C S Sbjct: 869 FSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAE 928 Query: 529 PKADLPKLQILSRDCSITDAEKENDGTFCISVAVEISKGSLIPLDTVRDFVVPFLLGSVI 708 K +LP LQI S+DC + D EKE+ FCI+V++ SK S I LDTVRD V+PFLLG+V+ Sbjct: 929 SKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVV 987 Query: 709 KGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLI 888 KG + D+L KS SG L L+V+VS +C W +L++A L+IMD+I Sbjct: 988 KG-CCIKNSDVL-----------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMI 1035 Query: 889 DWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFL 1068 DWERSHPDNIHDIF YGIDA KYFL SLKS +SDIGKT+LPEHLLLVA CLS TGEF+ Sbjct: 1036 DWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFV 1095 Query: 1069 GLNARGIS 1092 GLNA+G++ Sbjct: 1096 GLNAKGMA 1103 Score = 184 bits (466), Expect(2) = e-162 Identities = 97/219 (44%), Positives = 133/219 (60%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 +PGSCFI +LDA+AWGK VG+GG FDILYS KGH+L +P D++ +L Sbjct: 1122 SPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLL 1181 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 ++S N+++++P K GA+ + A D +KGC + E++ V R SL+ Sbjct: 1182 GSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLN 1241 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KLS L+ IL K IN LSE DK+ +M AL++HP EK+G G Q+I+V H K+ Sbjct: 1242 DIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYH 1301 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYQ 1837 N+RCF LVRTDGT DFSY KCV GA + + YQ Sbjct: 1302 NTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQ 1340 >ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit 1-like [Cucumis sativus] Length = 1469 Score = 365 bits (937), Expect(2) = e-150 Identities = 194/368 (52%), Positives = 258/368 (70%), Gaps = 4/368 (1%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGND--TSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSALDQP 171 GTVRNAYG+Q++QF Y D TS EN R G PVGSLAAC+ISEAAYSALDQP Sbjct: 859 GTVRNAYGNQLVQFCYDIDRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQP 918 Query: 172 ISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLF 351 IS LE SPLLNLK+VLE G K+ ++ +T SLFLS+KL + YG+EY AL VK+HLE+V+F Sbjct: 919 ISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMF 978 Query: 352 SNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNP 531 ++VS+VMII+S K SPW+CHFHVCKE +K+R L + S+I++LN C S + Sbjct: 979 KDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEG 1038 Query: 532 KADLPKLQILSRDCSITDAEKENDGTFCISVAV-EISKGSLIPLDTVRDFVVPFLLGSVI 708 + +LP LQI+++DC + D+ E+ T C++V + E +K S + LD ++D ++ FLLG+VI Sbjct: 1039 RMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVI 1098 Query: 709 KGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLI 888 +G + ++VDI WN P K + S GEL L+V +S S + W L+N L IMDLI Sbjct: 1099 RGFTEIDRVDITWNDRPKVPKPRCSH-GELYLRVTMSGEGNS-RFWATLMNNCLPIMDLI 1156 Query: 889 DWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFL 1068 DW RSHPDN H + YGID+ KYFL SL+S D+GKTI EHLLLV++ LS TGEF+ Sbjct: 1157 DWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFV 1216 Query: 1069 GLNARGIS 1092 GLN +G++ Sbjct: 1217 GLNVKGLT 1224 Score = 195 bits (495), Expect(2) = e-150 Identities = 97/207 (46%), Positives = 138/207 (66%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 +PG+C I +LDA+AWG+ +GTGGQFDILYSGKGH+L+KPVDV+++L Sbjct: 1243 SPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLL 1302 Query: 1361 RGESSLQGNNIEMRIPAYQKN-MCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSL 1537 G+S+ + N +I + KN + +K+ A+ + KG + + + R+ +L Sbjct: 1303 GGQSTCEKQNT--KIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTL 1360 Query: 1538 DDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKH 1717 +D+ KLS LR ILHK S+NE L+E DKS +M AL++HPH EK+G G QDI+VG H K+ Sbjct: 1361 NDIQKLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKY 1420 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 N+RCF+L+R+DGT DFSY KCV+GA Sbjct: 1421 QNTRCFVLIRSDGTTEDFSYHKCVLGA 1447 >ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma cacao] Length = 1484 Score = 375 bits (962), Expect(2) = e-148 Identities = 203/376 (53%), Positives = 261/376 (69%), Gaps = 13/376 (3%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTS---------GFCDENVYRCDEFGS-PVGSLAACSISEAA 150 GTVRN+YG ++QF Y D G E+ + G PVGSL+AC+ISEAA Sbjct: 863 GTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAA 922 Query: 151 YSALDQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKS 330 YSALDQP+S LETSPLLNLK+V+E G K++ +D+T++LFLS KL R +G EYAAL VK+ Sbjct: 923 YSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKN 982 Query: 331 HLEKVLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNREC 510 HLE++ FS++V+TV II+S Q +PW+CHFHVCK+ MKRR L VQSII++L+ C Sbjct: 983 HLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHC 1042 Query: 511 KSNGKNPKADLPKLQILS--RDCSITDAEKENDGTFCISVA-VEISKGSLIPLDTVRDFV 681 + K LP +QI S R CS D E+D TFCI+V VE SK S + LD +RD V Sbjct: 1043 TTAKTMWKISLPDMQITSNGRACSHIDMPNEDD-TFCITVTIVEYSKSSHMELDVIRDMV 1101 Query: 682 VPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLN 861 +P+LL +VIKG +KVDILW SK KS GEL L+VFVS + K+W +L+N Sbjct: 1102 IPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMN 1161 Query: 862 ASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVAD 1041 L+IMD+IDW RSHPDNI+ + YGIDA K+FL +LKS +SD GKTIL EHLL+VA+ Sbjct: 1162 DCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVAN 1221 Query: 1042 CLSVTGEFLGLNARGI 1089 CLS TGEF+GLN++G+ Sbjct: 1222 CLSATGEFVGLNSKGL 1237 Score = 181 bits (458), Expect(2) = e-148 Identities = 90/206 (43%), Positives = 129/206 (62%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NP + F+ T+DA+AWG+ +GTGGQFDI+YS K +L +PVDV+ +L Sbjct: 1257 NPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLL 1316 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 S Q ++E +P +K+G+ + A D ++ E ++R +LD Sbjct: 1317 GSSISSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWRELLTLD 1376 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ +LS LR+ILHK I+ LSEAD + +M AL++HP EK+G+G Q+I+VG HP+H Sbjct: 1377 DIQRLSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHA 1436 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 N+RCF LVRTDGT+VDFSY KCV+GA Sbjct: 1437 NARCFSLVRTDGTIVDFSYHKCVLGA 1462 >ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica] gi|462406650|gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica] Length = 1356 Score = 383 bits (983), Expect(2) = e-147 Identities = 201/372 (54%), Positives = 260/372 (69%), Gaps = 8/372 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGND------TSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSA 159 GTVRNAYG+Q++QFSY D TS ++ CD G PVGSL+AC++SEAAYSA Sbjct: 749 GTVRNAYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYSA 808 Query: 160 LDQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLE 339 LDQP+S LETSPLLNLK +LE G KK+++ +T+SLFLSKKL R +G+EY AL VK+HL Sbjct: 809 LDQPVSLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLV 868 Query: 340 KVLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSN 519 + FS++VSTVMII+S Q+ K SPW+ HFH+CKE +++R L V S++++L C S Sbjct: 869 GLTFSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSA 928 Query: 520 GKNPKADLPKLQILSRDCSITDAEKENDGTFCISVAV-EISKGSLIPLDTVRDFVVPFLL 696 K L L I S+ CS +D TFCI+V + E SK S LD RD V+PFLL Sbjct: 929 RPELKIVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLL 988 Query: 697 GSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEI 876 G+V+KG +KVDILWN P SK SGEL L+V +S ++W++L++ L+I Sbjct: 989 GTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQI 1048 Query: 877 MDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVT 1056 MDLIDW RSHPDN+HD YGIDA KYFL +L++ +DIGK ILP+HL+LVADCLS T Sbjct: 1049 MDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSAT 1108 Query: 1057 GEFLGLNARGIS 1092 GEF+GLNA+GI+ Sbjct: 1109 GEFVGLNAKGIA 1120 Score = 167 bits (423), Expect(2) = e-147 Identities = 90/206 (43%), Positives = 122/206 (59%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 +PG+CFI +++A+AWG P GTG QFDILYS +G L KP++ + +L Sbjct: 1139 SPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLL 1198 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 + S N A+ N DK S+ G SE + V R+ +++ Sbjct: 1199 GSQISSSRENAFETSKAWN-NTLDKCDVTSI---------GLEKSESVFKSVIRKYLTIN 1248 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ K + TL+ IL K INE L+E DKS++ ALH+HPH +KMG+G QDI+VG+HPKH Sbjct: 1249 DIQKWTQTLKRILRKYDINESLTEGDKSILKMALHFHPHKVDKMGSGVQDIKVGQHPKHE 1308 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 N+RCFMLVR D T DFSY KCV+GA Sbjct: 1309 NARCFMLVRIDRTEEDFSYHKCVLGA 1334 >ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina] gi|557542783|gb|ESR53761.1| hypothetical protein CICLE_v10018489mg [Citrus clementina] Length = 1443 Score = 367 bits (942), Expect(2) = e-142 Identities = 197/366 (53%), Positives = 255/366 (69%), Gaps = 2/366 (0%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSALDQPIS 177 GTVRNAYG+QI+QFSY + + E G PVGSL+AC+ISEAAYSALDQPIS Sbjct: 841 GTVRNAYGNQIVQFSYNIEGTST------PTGEIGDQPVGSLSACAISEAAYSALDQPIS 894 Query: 178 KLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSN 357 LETSPLLNLK VLE G KK+ +D+T+SLFLS KL + +G+EY AL VK+HLE ++ S+ Sbjct: 895 LLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSD 954 Query: 358 VVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKA 537 +VST MIIYS Q K SPWICHFHV KE MKR GL SII++L R+CK+ K Sbjct: 955 IVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKI 1014 Query: 538 DLPKLQILSRDCSITDAEKENDGTFCISV-AVEISKGSLIPLDTVRDFVVPFLLGSVIKG 714 +P + I ++DCS + +KE + FC++V VE K + I L+T++ +V+PFLL +V+KG Sbjct: 1015 SVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKG 1074 Query: 715 VSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLIDW 894 +KVDILW ASKS GEL L+V +S C +W+ L+N +IMD+IDW Sbjct: 1075 FREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDW 1134 Query: 895 ERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFLGL 1074 RSHPDNI YGIDA ++FL +L+S +SD GK ILPEHLL+VA+ LS TGEF+GL Sbjct: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194 Query: 1075 NARGIS 1092 NA+G++ Sbjct: 1195 NAKGLA 1200 Score = 169 bits (427), Expect(2) = e-142 Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 6/230 (2%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG+ FI ++DA+ WGK VGTGG FDI+YSG+G L KPVDV+++L Sbjct: 1219 NPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1278 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNS--ERLLNPVFRRDHS 1534 S + N ++++ Q + DK GA+ D KG N E + V R+ + Sbjct: 1279 STPVSSKQNE-KLKVCKAQGLISDKCGAKF----GDFAFKGLGNLDFETISRGVLRKSWT 1333 Query: 1535 LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1714 +DV++LS L+ ILHK SI + LSE DK+ V+ AL++HP EK+G P DI+V HP+ Sbjct: 1334 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1393 Query: 1715 HGNSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLY----QRLGMA 1852 H NSRCF LVR DG++ DFSY KCV+GA ++Y +RLG A Sbjct: 1394 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1443 >ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1 [Citrus sinensis] Length = 1481 Score = 366 bits (940), Expect(2) = e-142 Identities = 195/365 (53%), Positives = 254/365 (69%), Gaps = 1/365 (0%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRNAYG+QI+QFSY + + + G VGSL+AC+ISEAAYSALDQPIS Sbjct: 879 GTVRNAYGNQIVQFSYNIEGTSTPTGEIG-----GQSVGSLSACAISEAAYSALDQPISL 933 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G KK+ +D+T+SLFLS KL + +G+EY AL VK+HLE ++ S++ Sbjct: 934 LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDI 993 Query: 361 VSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKAD 540 VST MIIYS Q K SPWICHFHV KE MKR GL SII++L R+CK+ K Sbjct: 994 VSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS 1053 Query: 541 LPKLQILSRDCSITDAEKENDGTFCISV-AVEISKGSLIPLDTVRDFVVPFLLGSVIKGV 717 +P + I ++DCS + +KE + FC++V VE K + I L+T++ +V+PFLL +V+KG Sbjct: 1054 VPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGF 1113 Query: 718 SAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWE 897 +KVDILW ASKS GEL L+V +S C +W+ L+N +IMD+IDW Sbjct: 1114 REIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWT 1173 Query: 898 RSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLN 1077 RSHPDNI YGIDA ++FL +L+S +SD GK ILPEHLL+VA+ LS TGEF+GLN Sbjct: 1174 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1233 Query: 1078 ARGIS 1092 A+G++ Sbjct: 1234 AKGLA 1238 Score = 169 bits (427), Expect(2) = e-142 Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 6/230 (2%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG+ FI ++DA+ WGK VGTGG FDI+YSG+G L KPVDV+++L Sbjct: 1257 NPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1316 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNS--ERLLNPVFRRDHS 1534 S + N ++++ Q + DK GA+ D KG N E + V R+ + Sbjct: 1317 STPVSSKQNE-KLKVCKAQGLISDKCGAKF----GDFAFKGLGNLDFETISRGVLRKSWT 1371 Query: 1535 LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1714 +DV++LS L+ ILHK SI + LSE DK+ V+ AL++HP EK+G P DI+V HP+ Sbjct: 1372 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1431 Query: 1715 HGNSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLY----QRLGMA 1852 H NSRCF LVR DG++ DFSY KCV+GA ++Y +RLG A Sbjct: 1432 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1481 >ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2 [Citrus sinensis] gi|568847098|ref|XP_006477377.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3 [Citrus sinensis] gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4 [Citrus sinensis] Length = 1443 Score = 366 bits (940), Expect(2) = e-142 Identities = 195/365 (53%), Positives = 254/365 (69%), Gaps = 1/365 (0%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRNAYG+QI+QFSY + + + G VGSL+AC+ISEAAYSALDQPIS Sbjct: 841 GTVRNAYGNQIVQFSYNIEGTSTPTGEIG-----GQSVGSLSACAISEAAYSALDQPISL 895 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G KK+ +D+T+SLFLS KL + +G+EY AL VK+HLE ++ S++ Sbjct: 896 LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDI 955 Query: 361 VSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKAD 540 VST MIIYS Q K SPWICHFHV KE MKR GL SII++L R+CK+ K Sbjct: 956 VSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS 1015 Query: 541 LPKLQILSRDCSITDAEKENDGTFCISV-AVEISKGSLIPLDTVRDFVVPFLLGSVIKGV 717 +P + I ++DCS + +KE + FC++V VE K + I L+T++ +V+PFLL +V+KG Sbjct: 1016 VPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGF 1075 Query: 718 SAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLIDWE 897 +KVDILW ASKS GEL L+V +S C +W+ L+N +IMD+IDW Sbjct: 1076 REIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWT 1135 Query: 898 RSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFLGLN 1077 RSHPDNI YGIDA ++FL +L+S +SD GK ILPEHLL+VA+ LS TGEF+GLN Sbjct: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195 Query: 1078 ARGIS 1092 A+G++ Sbjct: 1196 AKGLA 1200 Score = 169 bits (427), Expect(2) = e-142 Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 6/230 (2%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG+ FI ++DA+ WGK VGTGG FDI+YSG+G L KPVDV+++L Sbjct: 1219 NPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL 1278 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNS--ERLLNPVFRRDHS 1534 S + N ++++ Q + DK GA+ D KG N E + V R+ + Sbjct: 1279 STPVSSKQNE-KLKVCKAQGLISDKCGAKF----GDFAFKGLGNLDFETISRGVLRKSWT 1333 Query: 1535 LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1714 +DV++LS L+ ILHK SI + LSE DK+ V+ AL++HP EK+G P DI+V HP+ Sbjct: 1334 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1393 Query: 1715 HGNSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLY----QRLGMA 1852 H NSRCF LVR DG++ DFSY KCV+GA ++Y +RLG A Sbjct: 1394 HQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1443 >ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1 [Solanum tuberosum] Length = 1446 Score = 382 bits (981), Expect(2) = e-140 Identities = 202/371 (54%), Positives = 260/371 (70%), Gaps = 7/371 (1%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGN-----DTSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSAL 162 GTVRNAYG+QI+QFSY T G D G PVGSLAAC+ISEAAYSAL Sbjct: 835 GTVRNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSAL 894 Query: 163 DQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEK 342 DQP+S LE+SPLLNLKK+LESG + ++T S+FLSK+L RW +G+EY AL VK HLE+ Sbjct: 895 DQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLER 954 Query: 343 VLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNG 522 +L S VVSTVMI +S + PW+CHFH+ KE +K R L ++SI++ALN ++ Sbjct: 955 LLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAAT 1014 Query: 523 KNPKADLPKLQILSRDCSITDAEKENDGTFCISVA-VEISKGSLIPLDTVRDFVVPFLLG 699 DLP L I +DCS+ +A KE CI+V+ VE SK LDT+RD V+PFLL Sbjct: 1015 TKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLDTLRDVVIPFLLE 1073 Query: 700 SVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIM 879 +VIKG SAF+KVDILW LP+ SKS + +GEL L+VF+SE+C K WN L+++ L+I Sbjct: 1074 TVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIR 1133 Query: 880 DLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTG 1059 DLIDWERS+PD++HD+ YGID A +YFL L S VS+ GK ILPEHL+L AD L+ TG Sbjct: 1134 DLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATG 1193 Query: 1060 EFLGLNARGIS 1092 EF+ L+A+G++ Sbjct: 1194 EFVPLSAKGLT 1204 Score = 145 bits (366), Expect(2) = e-140 Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG F+ +L+++AWGK +GTG FDI+YSGKG++ +P+DV+ +L Sbjct: 1223 NPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLL 1282 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 + + +++ + M K A L DD K C + + R S + Sbjct: 1283 QNHVTSGTPKVKVTLDE-DGGMDGKSLARRLDRLDDLNKKSCKSEWSITK--LRSFISFN 1339 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKH 1717 D+ KLS +L+ +L K +I+ L+EADK + M AL +HP EK+G G PQ+I++G H ++ Sbjct: 1340 DIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEY 1399 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCFMLVR+DG+V DFSYRKC+ A Sbjct: 1400 EDSRCFMLVRSDGSVEDFSYRKCMQHA 1426 >ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2 [Solanum tuberosum] Length = 1233 Score = 382 bits (981), Expect(2) = e-140 Identities = 202/371 (54%), Positives = 260/371 (70%), Gaps = 7/371 (1%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGN-----DTSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSAL 162 GTVRNAYG+QI+QFSY T G D G PVGSLAAC+ISEAAYSAL Sbjct: 622 GTVRNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSAL 681 Query: 163 DQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEK 342 DQP+S LE+SPLLNLKK+LESG + ++T S+FLSK+L RW +G+EY AL VK HLE+ Sbjct: 682 DQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLER 741 Query: 343 VLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNG 522 +L S VVSTVMI +S + PW+CHFH+ KE +K R L ++SI++ALN ++ Sbjct: 742 LLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAAT 801 Query: 523 KNPKADLPKLQILSRDCSITDAEKENDGTFCISVA-VEISKGSLIPLDTVRDFVVPFLLG 699 DLP L I +DCS+ +A KE CI+V+ VE SK LDT+RD V+PFLL Sbjct: 802 TKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLDTLRDVVIPFLLE 860 Query: 700 SVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIM 879 +VIKG SAF+KVDILW LP+ SKS + +GEL L+VF+SE+C K WN L+++ L+I Sbjct: 861 TVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIR 920 Query: 880 DLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTG 1059 DLIDWERS+PD++HD+ YGID A +YFL L S VS+ GK ILPEHL+L AD L+ TG Sbjct: 921 DLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATG 980 Query: 1060 EFLGLNARGIS 1092 EF+ L+A+G++ Sbjct: 981 EFVPLSAKGLT 991 Score = 145 bits (366), Expect(2) = e-140 Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG F+ +L+++AWGK +GTG FDI+YSGKG++ +P+DV+ +L Sbjct: 1010 NPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLL 1069 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 + + +++ + M K A L DD K C + + R S + Sbjct: 1070 QNHVTSGTPKVKVTLDE-DGGMDGKSLARRLDRLDDLNKKSCKSEWSITK--LRSFISFN 1126 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKH 1717 D+ KLS +L+ +L K +I+ L+EADK + M AL +HP EK+G G PQ+I++G H ++ Sbjct: 1127 DIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEY 1186 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCFMLVR+DG+V DFSYRKC+ A Sbjct: 1187 EDSRCFMLVRSDGSVEDFSYRKCMQHA 1213 >gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis] Length = 1410 Score = 355 bits (910), Expect(2) = e-139 Identities = 187/367 (50%), Positives = 252/367 (68%), Gaps = 3/367 (0%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GT+RN+YGS ++QF YG D + G PVGSL+AC+ISEAAYSALDQPIS Sbjct: 806 GTIRNSYGSHVVQFYYGTDEG--------TSEIAGQPVGSLSACAISEAAYSALDQPISL 857 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK LE G KK +T+ L+LS++L R +GYEYAAL VK++LE ++FS++ Sbjct: 858 LETSPLLNLKNALECGSKKRQGGQTMLLYLSRRLGRQRHGYEYAALEVKNYLEALMFSDI 917 Query: 361 VSTVMIIYSQQ---NCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNP 531 VSTVMI ++ Q K SPW E ++RR L VQS+IN+L ++ K Sbjct: 918 VSTVMITFTSQAGSQKSQKSFSPW--------EILRRRRLTVQSVINSLYERHSTSRKGS 969 Query: 532 KADLPKLQILSRDCSITDAEKENDGTFCISVAVEISKGSLIPLDTVRDFVVPFLLGSVIK 711 K LP L+I S+DCS+ +E++ T CI+V++E SK S+I L TV+D ++PFLL +++K Sbjct: 970 KVKLPNLRIRSKDCSVPATREEDNDTCCITVSIECSKNSVIQLITVQDLLIPFLLETIVK 1029 Query: 712 GVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEIMDLID 891 G EKVDILW+ N SK+ + SGEL LKV +S + W+ L+N L IMDLID Sbjct: 1030 GFREIEKVDILWSDRSNTSKATRDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRIMDLID 1089 Query: 892 WERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVTGEFLG 1071 W RSHP+N+++ + YGID+ K+FL +L+S VSD+GKTILPEHLLLVA+ LSVTG F+G Sbjct: 1090 WSRSHPENVNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVTGNFVG 1149 Query: 1072 LNARGIS 1092 L +G++ Sbjct: 1150 LTPKGLA 1156 Score = 170 bits (430), Expect(2) = e-139 Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 5/224 (2%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NP +CFI TLDA+AWG P+GTGGQF++++SGKGH++DKP++V+ ML Sbjct: 1175 NPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFSGKGHEVDKPINVYDML 1234 Query: 1361 RGESS--LQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTN---SERLLNPVFRR 1525 S +QG N P + + K+GA L D +++G S+ + +F+ Sbjct: 1235 ATGISPDVQGVN---ETPDAKNHRSVKFGA--LLLYDKSVSQGLKKLGISKDRIKKLFK- 1288 Query: 1526 DHSLDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGK 1705 LDD+ LS L IL+K IN+ L DKS +M AL++HP EK+GTG QDI+V Sbjct: 1289 ---LDDIWILSNALAKILNKYPINQSLDHKDKSTLMIALYFHPRIDEKIGTGFQDIKVAY 1345 Query: 1706 HPKHGNSRCFMLVRTDGTVVDFSYRKCVMGAAAATNNISPQLYQ 1837 HPKH +SRCF+LVR DGTV DFSYRKCV+GA + + ++Y+ Sbjct: 1346 HPKHQSSRCFVLVRADGTVEDFSYRKCVLGALEIIDPQAAEIYK 1389 >ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum lycopersicum] Length = 1446 Score = 379 bits (974), Expect(2) = e-137 Identities = 199/372 (53%), Positives = 261/372 (70%), Gaps = 8/372 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSY-------GNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSA 159 GTVRNAYG+QI+QFSY +G E+ + G PVGSLAAC+ISEAAY A Sbjct: 835 GTVRNAYGNQIVQFSYYEAEQIASTKVTGEALES-HNHAIGGHPVGSLAACAISEAAYCA 893 Query: 160 LDQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLE 339 LDQP+S LE+SPLLNLKK+LESG T ++T S+FLSK+L RW +G+EY AL VK HLE Sbjct: 894 LDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLE 953 Query: 340 KVLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSN 519 ++L S VVSTVMI +S + PW+CHFH+ KE +K R L ++S+++ALN ++ Sbjct: 954 RLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAA 1013 Query: 520 GKNPKADLPKLQILSRDCSITDAEKENDGTFCISVA-VEISKGSLIPLDTVRDFVVPFLL 696 DLP L I +DCS+ + +KE CI+V+ VE SK LDT+RD V+PFLL Sbjct: 1014 TTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLDTLRDVVIPFLL 1072 Query: 697 GSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEI 876 +VIKG SAF+KVDILW LP+ SKS + +GEL L+VF+SE+C K WN L+++ L+I Sbjct: 1073 ETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQI 1132 Query: 877 MDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVT 1056 DLIDWERS+PD++HD+ YGID A +YFL L S VS+ GK ILPEHL+L AD L+ T Sbjct: 1133 RDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTT 1192 Query: 1057 GEFLGLNARGIS 1092 GEF+ L+A+G++ Sbjct: 1193 GEFVPLSAKGLT 1204 Score = 137 bits (345), Expect(2) = e-137 Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG F+ +L+++AWGK +GTG FDI+YSGKG++L + ++V+ +L Sbjct: 1223 NPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLL 1282 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 R ++ N+++ + M L DD K C L R S + Sbjct: 1283 RNLVTVDTPNVKVTL-GKDGGMDGMSLVRRLDRLDDLDKKSC--KSELSFTKLRSYFSFN 1339 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKH 1717 D+ KLS +L+ +L K I L+EADK + M AL +HP EK+G G P++I++G H + Sbjct: 1340 DIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEF 1399 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 SRCFM+VR+D TV DFSYRKC+ A Sbjct: 1400 EGSRCFMVVRSDDTVEDFSYRKCMQHA 1426 >gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum] Length = 1138 Score = 379 bits (974), Expect(2) = e-137 Identities = 199/372 (53%), Positives = 261/372 (70%), Gaps = 8/372 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSY-------GNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSA 159 GTVRNAYG+QI+QFSY +G E+ + G PVGSLAAC+ISEAAY A Sbjct: 527 GTVRNAYGNQIVQFSYYEAEQIASTKVTGEALES-HNHAIGGHPVGSLAACAISEAAYCA 585 Query: 160 LDQPISKLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLE 339 LDQP+S LE+SPLLNLKK+LESG T ++T S+FLSK+L RW +G+EY AL VK HLE Sbjct: 586 LDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLE 645 Query: 340 KVLFSNVVSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSN 519 ++L S VVSTVMI +S + PW+CHFH+ KE +K R L ++S+++ALN ++ Sbjct: 646 RLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAA 705 Query: 520 GKNPKADLPKLQILSRDCSITDAEKENDGTFCISVA-VEISKGSLIPLDTVRDFVVPFLL 696 DLP L I +DCS+ + +KE CI+V+ VE SK LDT+RD V+PFLL Sbjct: 706 TTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLDTLRDVVIPFLL 764 Query: 697 GSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLEI 876 +VIKG SAF+KVDILW LP+ SKS + +GEL L+VF+SE+C K WN L+++ L+I Sbjct: 765 ETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQI 824 Query: 877 MDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSVT 1056 DLIDWERS+PD++HD+ YGID A +YFL L S VS+ GK ILPEHL+L AD L+ T Sbjct: 825 RDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTT 884 Query: 1057 GEFLGLNARGIS 1092 GEF+ L+A+G++ Sbjct: 885 GEFVPLSAKGLT 896 Score = 137 bits (345), Expect(2) = e-137 Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPG F+ +L+++AWGK +GTG FDI+YSGKG++L + ++V+ +L Sbjct: 915 NPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLL 974 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 R ++ N+++ + M L DD K C L R S + Sbjct: 975 RNLVTVDTPNVKVTL-GKDGGMDGMSLVRRLDRLDDLDKKSC--KSELSFTKLRSYFSFN 1031 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTG-PQDIQVGKHPKH 1717 D+ KLS +L+ +L K I L+EADK + M AL +HP EK+G G P++I++G H + Sbjct: 1032 DIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEF 1091 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 SRCFM+VR+D TV DFSYRKC+ A Sbjct: 1092 EGSRCFMVVRSDDTVEDFSYRKCMQHA 1118 >ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2 [Glycine max] Length = 1457 Score = 336 bits (862), Expect(2) = e-134 Identities = 181/373 (48%), Positives = 244/373 (65%), Gaps = 9/373 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + C++ + G VG+++AC+ISEAAYSAL QP+S Sbjct: 847 GTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSL 906 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G +K D+T+SLFLS+KL + +G+EYAAL VK++LE++LFSN+ Sbjct: 907 LETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNI 966 Query: 361 VSTVMIIYSQQNCHGK-LCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKA 537 VS VMII++ + + SPW+CHFH+ KE + RR L V SII++L + S K+ K Sbjct: 967 VSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKV 1026 Query: 538 DLPKLQILSRDCSITDAEKENDGTF--------CISVAVEISKGSLIPLDTVRDFVVPFL 693 L+I SR CS KE + T CI V + + + I LD+VRD V+PFL Sbjct: 1027 CFTNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFL 1086 Query: 694 LGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLE 873 LG+ I+G +KVDILWN + S+ SGEL L+V +S + W +LL + Sbjct: 1087 LGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHK 1146 Query: 874 IMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSV 1053 IM +IDW RSH DNI+ + YGIDA +YF SL SD GK+ILP+HL LVA+ LS Sbjct: 1147 IMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSC 1206 Query: 1054 TGEFLGLNARGIS 1092 +GEF+GLNA+G++ Sbjct: 1207 SGEFVGLNAKGMA 1219 Score = 171 bits (432), Expect(2) = e-134 Identities = 86/206 (41%), Positives = 124/206 (60%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGSCFI +LD +AWG + +GT G FD++YS KGH++ K VDV+ +L Sbjct: 1238 NPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1297 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 N I + Y + C G+E + +G + + R +++ Sbjct: 1298 EASFDKPNNKIGTHLHKYSSDKC---GSEFRHKNGYALKEG-----KQWKTILRNFVTVN 1349 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KL+ R IL+K SI+E LSE+D+S ++ L++HPH +EK G GPQDI+VG HPK+ Sbjct: 1350 DIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYK 1409 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++RTDGTV DFSYRKC++GA Sbjct: 1410 DSRCFHIIRTDGTVEDFSYRKCILGA 1435 >ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1 [Glycine max] Length = 1458 Score = 332 bits (850), Expect(2) = e-132 Identities = 181/374 (48%), Positives = 244/374 (65%), Gaps = 10/374 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + C++ + G VG+++AC+ISEAAYSAL QP+S Sbjct: 847 GTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSL 906 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G +K D+T+SLFLS+KL + +G+EYAAL VK++LE++LFSN+ Sbjct: 907 LETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNI 966 Query: 361 VSTVMIIYSQQNCHGK-LCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKA 537 VS VMII++ + + SPW+CHFH+ KE + RR L V SII++L + S K+ K Sbjct: 967 VSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKV 1026 Query: 538 DLPKLQILS-RDCSITDAEKENDGTF--------CISVAVEISKGSLIPLDTVRDFVVPF 690 L+I S R CS KE + T CI V + + + I LD+VRD V+PF Sbjct: 1027 CFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPF 1086 Query: 691 LLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASL 870 LLG+ I+G +KVDILWN + S+ SGEL L+V +S + W +LL Sbjct: 1087 LLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCH 1146 Query: 871 EIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLS 1050 +IM +IDW RSH DNI+ + YGIDA +YF SL SD GK+ILP+HL LVA+ LS Sbjct: 1147 KIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLS 1206 Query: 1051 VTGEFLGLNARGIS 1092 +GEF+GLNA+G++ Sbjct: 1207 CSGEFVGLNAKGMA 1220 Score = 171 bits (432), Expect(2) = e-132 Identities = 86/206 (41%), Positives = 124/206 (60%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGSCFI +LD +AWG + +GT G FD++YS KGH++ K VDV+ +L Sbjct: 1239 NPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1298 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 N I + Y + C G+E + +G + + R +++ Sbjct: 1299 EASFDKPNNKIGTHLHKYSSDKC---GSEFRHKNGYALKEG-----KQWKTILRNFVTVN 1350 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KL+ R IL+K SI+E LSE+D+S ++ L++HPH +EK G GPQDI+VG HPK+ Sbjct: 1351 DIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYK 1410 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++RTDGTV DFSYRKC++GA Sbjct: 1411 DSRCFHIIRTDGTVEDFSYRKCILGA 1436 >ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4 [Glycine max] Length = 1381 Score = 332 bits (850), Expect(2) = e-132 Identities = 181/374 (48%), Positives = 244/374 (65%), Gaps = 10/374 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + C++ + G VG+++AC+ISEAAYSAL QP+S Sbjct: 770 GTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSL 829 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G +K D+T+SLFLS+KL + +G+EYAAL VK++LE++LFSN+ Sbjct: 830 LETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNI 889 Query: 361 VSTVMIIYSQQNCHGK-LCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKA 537 VS VMII++ + + SPW+CHFH+ KE + RR L V SII++L + S K+ K Sbjct: 890 VSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKV 949 Query: 538 DLPKLQILS-RDCSITDAEKENDGTF--------CISVAVEISKGSLIPLDTVRDFVVPF 690 L+I S R CS KE + T CI V + + + I LD+VRD V+PF Sbjct: 950 CFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPF 1009 Query: 691 LLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASL 870 LLG+ I+G +KVDILWN + S+ SGEL L+V +S + W +LL Sbjct: 1010 LLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCH 1069 Query: 871 EIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLS 1050 +IM +IDW RSH DNI+ + YGIDA +YF SL SD GK+ILP+HL LVA+ LS Sbjct: 1070 KIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLS 1129 Query: 1051 VTGEFLGLNARGIS 1092 +GEF+GLNA+G++ Sbjct: 1130 CSGEFVGLNAKGMA 1143 Score = 171 bits (432), Expect(2) = e-132 Identities = 86/206 (41%), Positives = 124/206 (60%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGSCFI +LD +AWG + +GT G FD++YS KGH++ K VDV+ +L Sbjct: 1162 NPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1221 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 N I + Y + C G+E + +G + + R +++ Sbjct: 1222 EASFDKPNNKIGTHLHKYSSDKC---GSEFRHKNGYALKEG-----KQWKTILRNFVTVN 1273 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KL+ R IL+K SI+E LSE+D+S ++ L++HPH +EK G GPQDI+VG HPK+ Sbjct: 1274 DIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYK 1333 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++RTDGTV DFSYRKC++GA Sbjct: 1334 DSRCFHIIRTDGTVEDFSYRKCILGA 1359 >ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] Length = 1687 Score = 342 bits (876), Expect(2) = e-132 Identities = 185/386 (47%), Positives = 245/386 (63%), Gaps = 22/386 (5%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + CD G PVG+L+AC++SEAAYSAL QPIS Sbjct: 1013 GTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISL 1072 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LE SPLLNLK VLE G +K D+T+SLFLS+K+ + G+EYAAL VK++LE+ +FSN+ Sbjct: 1073 LEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNI 1132 Query: 361 VSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKAD 540 VSTVMII++ Q+C SPW+CHFH+ KE + RR L V SII++L ++ S + K Sbjct: 1133 VSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESKVI 1192 Query: 541 LPKLQILSRD-----------CS-----------ITDAEKENDGTFCISVAVEISKGSLI 654 LP L+I S+ CS T E DG CI+VAV + + Sbjct: 1193 LPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAVVEDSKNSV 1252 Query: 655 PLDTVRDFVVPFLLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKS 834 LD+VR ++PFLL + IKG +KVDILW LP +KS +GEL L+V +S + Sbjct: 1253 QLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDN 1312 Query: 835 AKVWNLLLNASLEIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTIL 1014 W L+N IM LIDW RSHPDNIH + +GIDA +++ +L S SD GK+IL Sbjct: 1313 GTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSIL 1372 Query: 1015 PEHLLLVADCLSVTGEFLGLNARGIS 1092 P+HL LVA+ LS +GEF+GLNA+G++ Sbjct: 1373 PKHLRLVANSLSASGEFVGLNAKGMA 1398 Score = 158 bits (399), Expect(2) = e-132 Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 1/207 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGS F+ LDA+AWG +P+GTGGQFDI+YS K +++K VDV+ +L Sbjct: 1417 NPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLL 1476 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSE-RLLNPVFRRDHSL 1537 E+S + E+ IP +K K ++ S G T E + V R + Sbjct: 1477 --ETSFNQMDQEINIPQSRKYSSGKCSSDFRSK-----NGGYTPKEPKQWKSVLRNFMTA 1529 Query: 1538 DDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKH 1717 +D+ +L+ R IL+K I+E LSE DK +M+ LH+HP EK G+GPQ+I+VG HP+ Sbjct: 1530 NDIQRLTFDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEF 1589 Query: 1718 GNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++R DG+V DFSYRKC++GA Sbjct: 1590 TDSRCFFIIRKDGSVEDFSYRKCILGA 1616 >ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5 [Cicer arietinum] Length = 1474 Score = 350 bits (898), Expect(2) = e-132 Identities = 182/373 (48%), Positives = 249/373 (66%), Gaps = 9/373 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + CD + G PVG+L+AC++SEAAYSAL QPIS Sbjct: 853 GTVRNLYGNQLIQFSYDAEEDSSCDSHFREDTIGGEPVGTLSACAVSEAAYSALSQPISL 912 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LE SPLLNLK VLE G +K D+T+SLFLS+K+ + G+EYAAL VK++LE+++FS++ Sbjct: 913 LEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDI 972 Query: 361 VSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKAD 540 VSTVMII++ Q+ + SPW+CHFH+ KE + RR L V SII++L + S K K Sbjct: 973 VSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVT 1032 Query: 541 LPKLQILSRDCSI---------TDAEKENDGTFCISVAVEISKGSLIPLDTVRDFVVPFL 693 LP L+I ++ CS+ T +KE DG CI+V + + + + LD VR+ ++PFL Sbjct: 1033 LPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPFL 1092 Query: 694 LGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASLE 873 L + IKG+ +KVDILW L SKS SGEL L+V +S + W L+N Sbjct: 1093 LRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCHR 1152 Query: 874 IMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLSV 1053 IM +IDW RSHPDNIH + +GIDA ++FL +L S SD G +ILP+HL LVA+ LS Sbjct: 1153 IMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLSA 1212 Query: 1054 TGEFLGLNARGIS 1092 +GEF+GLN++G++ Sbjct: 1213 SGEFVGLNSKGMA 1225 Score = 149 bits (377), Expect(2) = e-132 Identities = 84/208 (40%), Positives = 117/208 (56%), Gaps = 2/208 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGS F+ TLD +AWG + +GT GQFD++YS K +L K VDV+ +L Sbjct: 1244 NPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLL 1303 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKG--CTNSERLLNPVFRRDHS 1534 E+S + E+ DK ++ KG + V R + Sbjct: 1304 --ETSFDQLDQEINTSQSNNYSSDKCNSQFRHK------KGRYAPKEPKQWKSVIRNFMT 1355 Query: 1535 LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1714 +D+ KL+ R IL+K I++ LSE DK +M+ LH+HP EK+G+GPQ I+VG HPK Sbjct: 1356 ANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPK 1415 Query: 1715 HGNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++RTDGTV DFSYRKC++GA Sbjct: 1416 FTDSRCFFIIRTDGTVEDFSYRKCILGA 1443 >ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1 [Cicer arietinum] gi|502160026|ref|XP_004511608.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2 [Cicer arietinum] gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3 [Cicer arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X4 [Cicer arietinum] Length = 1475 Score = 347 bits (890), Expect(2) = e-131 Identities = 183/374 (48%), Positives = 249/374 (66%), Gaps = 10/374 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + CD + G PVG+L+AC++SEAAYSAL QPIS Sbjct: 853 GTVRNLYGNQLIQFSYDAEEDSSCDSHFREDTIGGEPVGTLSACAVSEAAYSALSQPISL 912 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LE SPLLNLK VLE G +K D+T+SLFLS+K+ + G+EYAAL VK++LE+++FS++ Sbjct: 913 LEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDI 972 Query: 361 VSTVMIIYSQQNCHGKLCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKAD 540 VSTVMII++ Q+ + SPW+CHFH+ KE + RR L V SII++L + S K K Sbjct: 973 VSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSKVT 1032 Query: 541 LPKLQI-LSRDCSI---------TDAEKENDGTFCISVAVEISKGSLIPLDTVRDFVVPF 690 LP L+I +R CS+ T +KE DG CI+V + + + + LD VR+ ++PF Sbjct: 1033 LPNLKISTNRKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLDVVRNMMIPF 1092 Query: 691 LLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASL 870 LL + IKG+ +KVDILW L SKS SGEL L+V +S + W L+N Sbjct: 1093 LLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTFWGALINHCH 1152 Query: 871 EIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLS 1050 IM +IDW RSHPDNIH + +GIDA ++FL +L S SD G +ILP+HL LVA+ LS Sbjct: 1153 RIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVANSLS 1212 Query: 1051 VTGEFLGLNARGIS 1092 +GEF+GLN++G++ Sbjct: 1213 ASGEFVGLNSKGMA 1226 Score = 149 bits (377), Expect(2) = e-131 Identities = 84/208 (40%), Positives = 117/208 (56%), Gaps = 2/208 (0%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGS F+ TLD +AWG + +GT GQFD++YS K +L K VDV+ +L Sbjct: 1245 NPGSTFLKAAKSGVVDNLQGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLL 1304 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKG--CTNSERLLNPVFRRDHS 1534 E+S + E+ DK ++ KG + V R + Sbjct: 1305 --ETSFDQLDQEINTSQSNNYSSDKCNSQFRHK------KGRYAPKEPKQWKSVIRNFMT 1356 Query: 1535 LDDVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPK 1714 +D+ KL+ R IL+K I++ LSE DK +M+ LH+HP EK+G+GPQ I+VG HPK Sbjct: 1357 ANDIQKLTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPK 1416 Query: 1715 HGNSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF ++RTDGTV DFSYRKC++GA Sbjct: 1417 FTDSRCFFIIRTDGTVEDFSYRKCILGA 1444 >ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine max] Length = 1369 Score = 345 bits (885), Expect(2) = e-130 Identities = 187/374 (50%), Positives = 247/374 (66%), Gaps = 10/374 (2%) Frame = +1 Query: 1 GTVRNAYGSQIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISK 180 GTVRN YG+Q+IQFSY + CD+ G PVG+++AC+ISEAAYSAL QP+S Sbjct: 761 GTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAAYSALGQPVSL 820 Query: 181 LETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNV 360 LETSPLLNLK VLE G +K D+T+SLFLS+KL + +G+EYAAL VK++LE++LFSN+ Sbjct: 821 LETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNI 880 Query: 361 VSTVMIIYSQQNCHGK-LCSPWICHFHVCKERMKRRGLNVQSIINALNRECKSNGKNPKA 537 VSTVMII++ + + SPW+CHFH+ KE + RR L V SII++L + S K+ K Sbjct: 881 VSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKV 940 Query: 538 DLPKLQILS-RDCSITDAEKENDGTF--------CISVAVEISKGSLIPLDTVRDFVVPF 690 L+I S R CS KE + T CI+V + + + I LD+VRD V+PF Sbjct: 941 CFTNLKISSNRKCSADSMAKEGEDTSIDKKEGDDCITVTIVENSKNPIQLDSVRDLVIPF 1000 Query: 691 LLGSVIKGVSAFEKVDILWNYLPNASKSQKSRSGELCLKVFVSENCKSAKVWNLLLNASL 870 LLG+ IKG +KVD+LWN S SGEL L+V +S + W +LLN Sbjct: 1001 LLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEGSRGRFWGVLLNLCH 1060 Query: 871 EIMDLIDWERSHPDNIHDIFNFYGIDAARKYFLRSLKSTVSDIGKTILPEHLLLVADCLS 1050 +IM +IDW RSHPDNI+ + YGIDA +YF SL S SD GK+ILP+HL LVA+ LS Sbjct: 1061 KIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKSILPKHLCLVANSLS 1120 Query: 1051 VTGEFLGLNARGIS 1092 +GEF+GLNA+G++ Sbjct: 1121 CSGEFVGLNAKGMA 1134 Score = 150 bits (380), Expect(2) = e-130 Identities = 82/206 (39%), Positives = 118/206 (57%) Frame = +2 Query: 1181 NPGSCFIXXXXXXXXXXXXXTLDAVAWGKEVPVGTGGQFDILYSGKGHKLDKPVDVFHML 1360 NPGSCFI +LDA+AWG + +GT G FDI+YS K+ K +V+ +L Sbjct: 1153 NPGSCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIYS---EKVAKSGNVYELL 1209 Query: 1361 RGESSLQGNNIEMRIPAYQKNMCDKWGAESLSACDDPITKGCTNSERLLNPVFRRDHSLD 1540 N + Y + C G+E + +G + + R +++ Sbjct: 1210 EASFDKPNNKAGTHLHKYSSDKC---GSEFRHKNGYALKEG-----KQWKTILRNFVTVN 1261 Query: 1541 DVVKLSITLRDILHKSSINEFLSEADKSVVMEALHYHPHSTEKMGTGPQDIQVGKHPKHG 1720 D+ KL+ R IL+K SI+E LSE+D+S ++ L++HP +EK G GPQDI+VG HPK+ Sbjct: 1262 DIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKYK 1321 Query: 1721 NSRCFMLVRTDGTVVDFSYRKCVMGA 1798 +SRCF +VR DGTV DFSYRKC++GA Sbjct: 1322 DSRCFHIVRIDGTVEDFSYRKCILGA 1347