BLASTX nr result
ID: Akebia27_contig00030081
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00030081
(849 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 225 1e-56
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 211 3e-52
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The... 207 4e-51
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr... 207 5e-51
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 207 5e-51
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr... 207 5e-51
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 203 8e-50
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 194 3e-47
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 188 3e-45
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 186 7e-45
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 186 7e-45
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu... 185 2e-44
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 184 5e-44
gb|ABD96891.1| hypothetical protein [Cleome spinosa] 180 7e-43
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea] 179 9e-43
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm... 178 3e-42
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 177 4e-42
ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 177 4e-42
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 175 2e-41
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 175 2e-41
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 225 bits (574), Expect = 1e-56
Identities = 131/272 (48%), Positives = 169/272 (62%), Gaps = 20/272 (7%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFDLFHFDRQNHPQPYTQFCWSKISVDMWRNVAKHVASSR----- 594
MS S+T + N+ F FH H P S IS +WRN AK S +
Sbjct: 1 MSRSQTPLSPANISKNFT-FHSPLIFHKNP------SMISTTVWRNFAKQAISRKQRFHI 53
Query: 593 ---------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN-GVLLSQEDQMGRRNF 444
+L Q S+ + FEL SS FS++G R G + S ED M + +F
Sbjct: 54 NSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSF 113
Query: 443 RYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQK 279
RNPI F KG+ASVAEAVSSTD EE+VSVVDE+Q LL++MS E+K+ + Q+
Sbjct: 114 WSVRNPIWFNGFCPKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRT 173
Query: 278 QQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLG 99
+QN GMG GKYH+L++RQ+KIETEAW++AA+EY+EL+ DMC+QKLAPNLPYMKSLFLG
Sbjct: 174 RQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLG 233
Query: 98 WFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
WF P R++I EQ+ R+GKN+ YA Y D L
Sbjct: 234 WFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQL 265
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product
[Vitis vinifera]
Length = 1035
Score = 211 bits (537), Expect = 3e-52
Identities = 135/277 (48%), Positives = 168/277 (60%), Gaps = 25/277 (9%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFDLF-HFDRQNHPQPYTQFCWSKISVDMWRNVAKHVA------- 603
MSS +T I + NL DL F++ + +P K MWRN+AK
Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPL----KKPTVMWRNIAKRAIPRAPRKC 56
Query: 602 ---SSRNLTR------FSQNSIIQK--KTRSFELKIQSSFDFSKMGIRN-GVLLSQEDQM 459
S+ L+R FSQ+ I + K +FE SS FS+MG R G + S+ED +
Sbjct: 57 VYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAV 116
Query: 458 GRRNFRYFRNPISFKGF-----ASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFE 294
GR +F RN + F GF ASVAEAVSSTD EEDVS DEIQ LL +M KE+K+
Sbjct: 117 GRPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVN 176
Query: 293 LGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMK 114
++++ + GM G+Y LR+RQVKIETEAW+ AA+EYKELL DMC+QKLAPNLPYMK
Sbjct: 177 FKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMK 236
Query: 113 SLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
SLFLGWF P RD+I EQE R GKN+ YA YFD L
Sbjct: 237 SLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQL 273
>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1100
Score = 207 bits (527), Expect = 4e-51
Identities = 128/273 (46%), Positives = 167/273 (61%), Gaps = 21/273 (7%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFDLF-HFDRQNHPQPYTQFCWSKISVDMWRNVAKHVASSR---- 594
MS T + + NL +KFD F D +N Y KIS+ MWRN+AKH S R
Sbjct: 1 MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNP--PKISIVMWRNIAKHAISRRTHSF 58
Query: 593 -------NLTRFSQNSIIQKKTRSFELKIQSSFDFSKM----GIRNGVLLSQEDQMGRRN 447
+ SQ+SI +K++ LK S S+ G R G +L+ + +G+++
Sbjct: 59 QCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGKQS 118
Query: 446 FRYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQ 282
F RN I +G+ SVAEAVSSTD EEDVSVV+EI+ LL++M KE ++ ++
Sbjct: 119 FGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKEQRRETGNRRR 178
Query: 281 KQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFL 102
+ Q + GMG KY LR+RQVKIETEAW+QAA+EY+ELL DMC+ KLAPNLPY+KSLFL
Sbjct: 179 RCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYIKSLFL 238
Query: 101 GWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
GWF P RD+I EQE +R GK R YA Y D L
Sbjct: 239 GWFEPLRDAIIKEQELYRLGKLRAGYAGYLDQL 271
>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533046|gb|ESR44229.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 928
Score = 207 bits (526), Expect = 5e-51
Identities = 127/270 (47%), Positives = 170/270 (62%), Gaps = 18/270 (6%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 600
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 599 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 444
+ + SQ+SI+++K + L + R G +L+ ED MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 443 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 270
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++ E G + +
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178
Query: 269 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 93
V GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179 RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
Query: 92 GPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
P RD+I EQE+ R K++ YA YFD L
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQL 268
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 207 bits (526), Expect = 5e-51
Identities = 127/270 (47%), Positives = 170/270 (62%), Gaps = 18/270 (6%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 600
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 599 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 444
+ + SQ+SI+++K + L + R G +L+ ED MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 443 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 270
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++ E G + +
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178
Query: 269 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 93
V GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179 RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
Query: 92 GPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
P RD+I EQE+ R K++ YA YFD L
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQL 268
>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533044|gb|ESR44227.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 933
Score = 207 bits (526), Expect = 5e-51
Identities = 127/270 (47%), Positives = 170/270 (62%), Gaps = 18/270 (6%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 600
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 599 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 444
+ + SQ+SI+++K + L + R G +L+ ED MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 443 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 270
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE+++ E G + +
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGRNRR 178
Query: 269 LVG-GMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWF 93
V GMG GKY +L+ RQVKIETEAW+QAA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 179 RVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWF 238
Query: 92 GPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
P RD+I EQE+ R K++ YA YFD L
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQL 268
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 203 bits (516), Expect = 8e-50
Identities = 124/269 (46%), Positives = 168/269 (62%), Gaps = 17/269 (6%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFD-----LFHFDRQNHPQPYTQF-CWSKISVDMWRNVAKHVAS- 600
MS+++T P NKFD ++ + N+ +P +F KIS MWRNVAK S
Sbjct: 1 MSNNKT--PIFFSANKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58
Query: 599 --------SRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 444
+ + SQ+SI+++K + L + R G +L+ ED MGR +F
Sbjct: 59 HLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRIGEILNHEDYMGRTSF 118
Query: 443 RYFRNPISF--KGFASVAEAVSSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQN 270
+N + +G+A+VAEAVSSTD EEDVS+V+EIQ LL++M KE + G + ++
Sbjct: 119 GVLKNDNFWCPRGYATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEQQSG---GGRNRRR 175
Query: 269 LVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFG 90
+ GMG GKY +L+ RQVKIETEAW++AA EY+ELL DMC+QKLAPNLPYMKSLFLGWF
Sbjct: 176 VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFE 235
Query: 89 PFRDSITGEQEQFRRGKNRGNYARYFDHL 3
P RD+I EQE+ R K++ YA YFD L
Sbjct: 236 PLRDAIAKEQERCRMAKHKVAYAPYFDQL 264
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 194 bits (494), Expect = 3e-47
Identities = 110/229 (48%), Positives = 150/229 (65%), Gaps = 19/229 (8%)
Frame = -2
Query: 632 MWRNVAKHVASSRNLTRFSQNSIIQK-----------KTRSFELKIQSSFDFSKMGIRN- 489
MWRN+AKH A +R L SQ+S K R+ E + + G+R
Sbjct: 1 MWRNLAKH-AYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59
Query: 488 GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQGLL 330
GVL Q+D++GR F + P++F KG+AS AEA++S EED+S VDE+Q L+
Sbjct: 60 GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIAS---EEDMSGVDEVQELV 116
Query: 329 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 150
E+++K DK +KQ L+GG+ GK+++LR+RQ+K+ETEAW++AA+EY+ELL DMC
Sbjct: 117 EEVNKGDKL------EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMC 170
Query: 149 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
+QKLAPNLPY+KSLFLGWF P RD I EQ+ ++GKNR YA YFDHL
Sbjct: 171 EQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHL 219
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and
chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 188 bits (477), Expect = 3e-45
Identities = 113/229 (49%), Positives = 145/229 (63%), Gaps = 19/229 (8%)
Frame = -2
Query: 632 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 492
MWRN+ K ++S S+N T F Q+S+ + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 491 N-GVLLSQEDQMGRRNFRYFRNPISF---KGFASVAEAV--SSTDTEEDVSVVDEIQGLL 330
N G L ++ + R + N F K +ASVAEAV SSTD EEDVSVVDE+Q LL
Sbjct: 94 NLGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELL 153
Query: 329 EKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMC 150
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC
Sbjct: 154 TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213
Query: 149 KQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
+QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+Y L
Sbjct: 214 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQL 262
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 186 bits (473), Expect = 7e-45
Identities = 113/228 (49%), Positives = 144/228 (63%), Gaps = 18/228 (7%)
Frame = -2
Query: 632 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 492
MWRN+ K ++S S+N T F Q+SI + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 491 N-GVLLSQEDQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 327
N G L ++ + R + N K +ASVAEAV SSTD EEDVSVVDE+ LL
Sbjct: 94 NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153
Query: 326 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 147
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213
Query: 146 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+YF L
Sbjct: 214 QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQL 261
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 186 bits (473), Expect = 7e-45
Identities = 113/228 (49%), Positives = 144/228 (63%), Gaps = 18/228 (7%)
Frame = -2
Query: 632 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKTRSFELKIQSSFDFSKMGIR 492
MWRN+ K ++S S+N T F Q+SI + T+ F I S MG +
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTK-FRSLIPISCSNIVMGFQ 93
Query: 491 N-GVLLSQEDQMGRRNFR--YFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLE 327
N G L ++ + R + N K +ASVAEAV SSTD EEDVSVVDE+ LL
Sbjct: 94 NLGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLT 153
Query: 326 KMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCK 147
++ KE+KK F ++KQ+ L GMG KY L++RQVK+ETEAW+QAA+EYKELL DMC+
Sbjct: 154 ELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCE 213
Query: 146 QKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ YA+YF L
Sbjct: 214 QKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQL 261
>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
gi|550340797|gb|ERP62048.1| hypothetical protein
POPTR_0004s11060g [Populus trichocarpa]
Length = 475
Score = 185 bits (470), Expect = 2e-44
Identities = 112/244 (45%), Positives = 142/244 (58%), Gaps = 28/244 (11%)
Frame = -2
Query: 650 SKISVDMWRNVAKHV-----ASSRNLTRFSQNSIIQKKTRSFELKIQSSFDFSKMGI--- 495
SK S MWRNVAK + S N F +T SF Q F K
Sbjct: 32 SKPSTVMWRNVAKQAILKPQSKSLNFPSFP-------RTHSFLGAPQEPIFFEKSKFHSV 84
Query: 494 ----------RNGVLLSQEDQMGRRNFRYFRNPISF----------KGFASVAEAVSSTD 375
R G + + ED MG+ +F + RN S +G+ SVAEAVSSTD
Sbjct: 85 NNSSPQLCFRRIGEISTHEDYMGKPSFGFLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTD 144
Query: 374 TEEDVSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAW 195
E++V V +E+Q LL+ KE++K + ++++ + GMG GKY LR+RQVKIE EAW
Sbjct: 145 VEDNVVVDEELQELLQDTRKEEEKEKDFRRRRRLHANRGMGSGKYKALRRRQVKIEAEAW 204
Query: 194 DQAAREYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARY 15
+QAA+EYKELL+DMC+ KLAPNLPYMK LFLGWF P RD+I EQE RRGK R +Y+ Y
Sbjct: 205 EQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRDAIAKEQESIRRGKTRPDYSPY 264
Query: 14 FDHL 3
FD L
Sbjct: 265 FDLL 268
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 184 bits (466), Expect = 5e-44
Identities = 108/232 (46%), Positives = 147/232 (63%), Gaps = 22/232 (9%)
Frame = -2
Query: 632 MWRNVAKHVASSR-NLTR-------------FSQNSIIQKKTRSFELKIQSSFDFSKMGI 495
MWRN+AK VAS + NL+ FSQ S K R FE + + MG
Sbjct: 1 MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60
Query: 494 RN-GVLLSQEDQMGRRNFRYFRNPISF-------KGFASVAEAVSSTDTEEDVSVVDEIQ 339
R G + SQ++++GR + P KG+ASVAEA++STD EED S +EIQ
Sbjct: 61 RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQ 120
Query: 338 GLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLE 159
+LE + +E+ E ++ + +V GMG GKY+LLRKRQ+K+ETEAW +AA+EY+ELL
Sbjct: 121 EMLEDLIRENN-MVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179
Query: 158 DMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
DMC+QKLAPNLPY+KSLFLGWF P RD+I +Q+ ++ +R ++A YFDHL
Sbjct: 180 DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHL 231
>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 180 bits (456), Expect = 7e-43
Identities = 112/230 (48%), Positives = 139/230 (60%), Gaps = 20/230 (8%)
Frame = -2
Query: 632 MWRNVAKHVAS-----------SRNLTRFSQNSIIQKKT--RSFELKIQSSFDFSKMGI- 495
MWRN+AK S SR L FS SI + R + SS F MG
Sbjct: 40 MWRNIAKQTISRSPVRLSVCRQSRGLLGFSSESIFPEIFIFRPSVIGPISSSGFHDMGYS 99
Query: 494 RNGVLLSQEDQMGRRNFRYFRNPISF-----KGFASVAEAVSSTDTEEDVSVVDEIQGLL 330
R + + D GR F + ++ F + + + AEAVSSTD EED SVVDE+Q LL
Sbjct: 100 RTCEIPAPGDFSGRPGFGFLKDECCFHRFSPRSYVNAAEAVSSTDIEEDASVVDEVQELL 159
Query: 329 EKMSKEDKKF-FELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDM 153
+M KE+KK L + K+Q +G M KY L++RQVKIETEAW++AA EYKELL DM
Sbjct: 160 REMKKEEKKEKVHLRRVKRQEDLG-MLEKKYQSLKRRQVKIETEAWEKAANEYKELLTDM 218
Query: 152 CKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
C+QKLAPNLPY+KSLFLGWF P R++I +QE +R GKNR NYA Y D L
Sbjct: 219 CEQKLAPNLPYVKSLFLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQL 268
>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 179 bits (455), Expect = 9e-43
Identities = 115/238 (48%), Positives = 138/238 (57%), Gaps = 25/238 (10%)
Frame = -2
Query: 641 SVDMWRNVAKHVASSRNLTRFSQNSIIQK----------------KTRSFELKIQSSFDF 510
S MWRN AK S + SI + K R FEL + F
Sbjct: 38 STIMWRNFAKQAISRTPNLCLRKFSISRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSF 97
Query: 509 SKMGI-RNGVLLSQEDQMGRRNFRYFRNPISF-----KGFASVAEAV--SSTDTEEDVSV 354
S++G R G L +E R N ++F KG+ASV EA SSTD E+DVSV
Sbjct: 98 SEVGFCREGGSLVKEGIGERPVSGCLGNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSV 157
Query: 353 VDEIQGLLEKMSKEDKKF-FELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAARE 177
DEIQ L+E+M KE+K+ + Q+QQ +V GM KY LR RQ+K+ETE+W QAA E
Sbjct: 158 FDEIQELVEEMRKEEKRAKWRESHQRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAANE 217
Query: 176 YKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
YKELL DMCK KLAPNLPY+KSLFLGWF PFRDSI +QE R+GK RG Y YFD L
Sbjct: 218 YKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQL 275
>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical
protein [Ricinus communis]
Length = 395
Score = 178 bits (451), Expect = 3e-42
Identities = 111/240 (46%), Positives = 148/240 (61%), Gaps = 30/240 (12%)
Frame = -2
Query: 632 MWRNVAKHV---ASSRNLTRFSQNS------IIQKKTRSFELKIQSSFDFSKMG--IRNG 486
MWRNVAK A S++L+ +S + Q+ + + + K+ + S + R G
Sbjct: 1 MWRNVAKQTISRAQSKSLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYACSSLVGFCRLG 60
Query: 485 VLLSQEDQMGRRNFRYFRNPISF------------------KGFASVAEAVSS-TDTEED 363
++ ED MG+ F N + +G+ SVAEAVSS TD EED
Sbjct: 61 EIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVSSSTDVEED 120
Query: 362 VSVVDEIQGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAA 183
VSVV+E+Q LL++M +E+ + EL ++K++ GMG KY +L+KRQVKIETEAW+ A
Sbjct: 121 VSVVEEVQELLQEMRREEAREKELIRRKER----GMGSKKYQMLKKRQVKIETEAWEWAV 176
Query: 182 REYKELLEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
+EYKELL DMC++KLAPNLPYMKSLFLGWF PFRD+I EQE R GKNR +A YFD L
Sbjct: 177 KEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNRTAFAPYFDQL 236
>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 1019
Score = 177 bits (449), Expect = 4e-42
Identities = 109/230 (47%), Positives = 143/230 (62%), Gaps = 23/230 (10%)
Frame = -2
Query: 632 MWRNVAKHVAS---------SRNLTR----FSQNSIIQKKT--RSFELKIQSSFDFSKMG 498
MWRN+ K +S S+N T F Q+S+ + K RSF S+ F +MG
Sbjct: 31 MWRNIVKQFSSRTPQKILLTSKNRTYSFLGFGQDSVFKDKRILRSFIPVSCSNSGFLEMG 90
Query: 497 IRNGVLLSQEDQMGRRNF------RYFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEI 342
+N L + D+ RR + N I K +ASVAEAV SSTD EEDVSVV E+
Sbjct: 91 FQN---LGEFDEFLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTDAEEDVSVVGEV 147
Query: 341 QGLLEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELL 162
Q LL ++ KE+KK F ++ Q+ L G+ KY L++RQVKIET+AW+ AA+EY+ELL
Sbjct: 148 QELLTELKKEEKKQFTFRRRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELL 207
Query: 161 EDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYF 12
DMC+QKLAPNLPY+KSLFLGWF P RD I EQE +GK++ Y++YF
Sbjct: 208 FDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKAAYSKYF 257
>ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Cicer arietinum]
Length = 1002
Score = 177 bits (449), Expect = 4e-42
Identities = 102/230 (44%), Positives = 144/230 (62%), Gaps = 20/230 (8%)
Frame = -2
Query: 632 MWRNVAKHVASSR-NLT-----------RFSQNSIIQKKTRSFELKIQSSFDFSKMGIRN 489
MW N+ K +S + NL+ RFSQ+S +K I S F G
Sbjct: 1 MWTNIVKRASSKKFNLSYSISSSSSSSLRFSQHSNFPEKILPQTRIINSRHPF--FGFSQ 58
Query: 488 GVLLSQEDQMGRRNFRYFRNPISF--------KGFASVAEAVSSTDTEEDVSVVDEIQGL 333
+ + E+++GR N + +P +F +G+ SVAEA+ S+DTE+D S +E+Q L
Sbjct: 59 VSIFNSENKLGRSNLSFSEDPFTFSSTSVAHFRGYGSVAEAIESSDTEDDHSGCEEVQKL 118
Query: 332 LEKMSKEDKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDM 153
LE+M KE+KK EL QK N GGM KY +L++RQ+KIETEAW++AAREY+ELLEDM
Sbjct: 119 LEEMVKEEKKKPELENQKN-NSGGGMASYKYKMLKRRQIKIETEAWEEAAREYQELLEDM 177
Query: 152 CKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
+QKLAPNLPYMKSLFLGWF P +++I +QE + ++R +++ YF+ L
Sbjct: 178 REQKLAPNLPYMKSLFLGWFEPLKNAIADDQELCKDYRHRASHSPYFNEL 227
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 175 bits (444), Expect = 2e-41
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 24/234 (10%)
Frame = -2
Query: 632 MWRNVAKHVASSRNLTRFSQN---------------SIIQKKTRSFELKIQSSFDFSKMG 498
MWRN++K + RN FS++ SI + +L+ + S++G
Sbjct: 1 MWRNLSKQ-SYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELG 59
Query: 497 IRNGVLLSQEDQ--------MGRRNFRYFRNPISFKGFASVAEAVSSTDTEEDVSVVDEI 342
R ++ + + + FR+F S +G+A+ AEA+ ST EE VDE+
Sbjct: 60 FRRALVFWRPPREASCPNYAISSHTFRFFG---STRGYAAAAEALVSTSEEE----VDEL 112
Query: 341 QGLLEKMSKE-DKKFFELGQQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKEL 165
Q L+E+++KE + K + +QKQ LVGGMG GKY+ LR+RQ+KIETEAW+ AA+EY+EL
Sbjct: 113 QELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQEL 172
Query: 164 LEDMCKQKLAPNLPYMKSLFLGWFGPFRDSITGEQEQFRRGKNRGNYARYFDHL 3
LEDMC+QKLAPNLPY+KSLFLGWF P RD+I EQ+ + GKNRG YA YFD L
Sbjct: 173 LEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQL 226
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Solanum lycopersicum]
Length = 1022
Score = 175 bits (444), Expect = 2e-41
Identities = 119/272 (43%), Positives = 158/272 (58%), Gaps = 23/272 (8%)
Frame = -2
Query: 758 MSSSRTLIPTRNLCNKFDLFHFDRQNHPQPYTQFCWSKISVDMWRNVAKHVAS------- 600
MS ++T I +L +FD F D + +P IS MWRN+ K ++
Sbjct: 1 MSCTKTPI---SLTIRFDQFT-DLETNPY--------HISPIMWRNIVKQFSTRTPQKIL 48
Query: 599 --SRN----LTRFSQNSIIQKKT--RSFELKIQSSFDFSKMGIRNGVLLSQEDQMGRRNF 444
S+N F +S+ + K RSF S+ F +MG +N D+ RR
Sbjct: 49 LTSKNHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFLEMGFQNLGEFLPGDEFLRRPL 108
Query: 443 ------RYFRNPISFKGFASVAEAV--SSTDTEEDVSVVDEIQGLLEKMSKEDKKFFELG 288
+ N I K +ASVAEAV SSTD EEDVSVV E+Q LL ++ KE+KK F
Sbjct: 109 LCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFR 168
Query: 287 QQKQQNLVGGMGPGKYHLLRKRQVKIETEAWDQAAREYKELLEDMCKQKLAPNLPYMKSL 108
++KQ+ L G+ KY L +RQVKIET+AW+QAA+EY+ELL DMC+QKLAPNLPY+KSL
Sbjct: 169 RRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSL 228
Query: 107 FLGWFGPFRDSITGEQEQFRRGKNRGNYARYF 12
FLGWF P RD I EQE +GK++ Y++YF
Sbjct: 229 FLGWFEPLRDKIAQEQELCIQGKSKAAYSKYF 260