BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00029874
         (359 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chlorop...    73   4e-11
gb|EXC01483.1| 50S ribosomal protein L4 [Morus notabilis]              69   7e-10
ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus ...    69   9e-10
ref|XP_007016161.1| 50S ribosomal protein L4 isoform 3, partial ...    68   1e-09
ref|XP_007016160.1| 50S ribosomal protein L4 isoform 2, partial ...    68   1e-09
ref|XP_007016159.1| 50S ribosomal protein L4 isoform 1 [Theobrom...    68   1e-09
ref|XP_002309469.2| hypothetical protein POPTR_0006s23770g [Popu...    66   6e-09
ref|NP_001030985.1| 50S ribosomal protein L4 [Arabidopsis thalia...    65   1e-08
ref|NP_849604.1| 50S ribosomal protein L4 [Arabidopsis thaliana]...    65   1e-08
gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana]             65   1e-08
emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana] gi|2...    65   1e-08
ref|NP_563786.1| 50S ribosomal protein L4 [Arabidopsis thaliana]...    65   1e-08
ref|XP_006417815.1| hypothetical protein EUTSA_v10008395mg [Eutr...    65   1e-08
ref|XP_006417814.1| hypothetical protein EUTSA_v10008395mg [Eutr...    65   1e-08
ref|XP_006305486.1| hypothetical protein CARUB_v10009944mg [Caps...    64   2e-08
ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arab...    64   2e-08
gb|EMT00761.1| 50S ribosomal protein L4, chloroplastic [Aegilops...    64   2e-08
emb|CAA63651.1| ribosomal protein L4 [Spinacia oleracea]               63   4e-08
sp|O49937.1|RK4_SPIOL RecName: Full=50S ribosomal protein L4, ch...    63   4e-08
tpg|DAA44542.1| TPA: 50S ribosomal protein L4 [Zea mays]               63   4e-08

>ref|XP_004143147.1| PREDICTED: 50S ribosomal protein L4, chloroplastic-like [Cucumis
           sativus] gi|449496602|ref|XP_004160176.1| PREDICTED: 50S
           ribosomal protein L4, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 35/52 (67%), Positives = 41/52 (78%)
 Frame = +3

Query: 204 SHSQTLNPNSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S   +L P +  + I SELATLP+LSF G+K+GETYLDLKSAPP TARAVVH
Sbjct: 33  SKPNSLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVH 84


>gb|EXC01483.1| 50S ribosomal protein L4 [Morus notabilis]
          Length = 293

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 37/58 (63%), Positives = 42/58 (72%), Gaps = 4/58 (6%)
 Frame = +3

Query: 198 PFSHSQTLN----PNSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           PF   +T N    P    + I SELATLP+LSF GEK+GET+LDLKSAPP TARAVVH
Sbjct: 32  PFLSFKTPNSLKSPTPKPLSIISELATLPVLSFTGEKVGETFLDLKSAPPETARAVVH 89


>ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
           gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4,
           putative [Ricinus communis]
          Length = 283

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 36/55 (65%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
 Frame = +3

Query: 201 FSHSQTLNP--NSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           FS   +LNP  +S  + I  +++TLPILSF GEKIGETYLDLK+APP TARAVVH
Sbjct: 30  FSKPNSLNPPNSSLSLSISCQVSTLPILSFTGEKIGETYLDLKTAPPDTARAVVH 84


>ref|XP_007016161.1| 50S ribosomal protein L4 isoform 3, partial [Theobroma cacao]
           gi|508786524|gb|EOY33780.1| 50S ribosomal protein L4
           isoform 3, partial [Theobroma cacao]
          Length = 269

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = +3

Query: 228 NSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           ++P + I S+L+TL ILSF GEKIGETYLDLKSAPP TARAVVH
Sbjct: 21  SNPNLCIASQLSTLSILSFTGEKIGETYLDLKSAPPETARAVVH 64


>ref|XP_007016160.1| 50S ribosomal protein L4 isoform 2, partial [Theobroma cacao]
           gi|508786523|gb|EOY33779.1| 50S ribosomal protein L4
           isoform 2, partial [Theobroma cacao]
          Length = 271

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = +3

Query: 228 NSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           ++P + I S+L+TL ILSF GEKIGETYLDLKSAPP TARAVVH
Sbjct: 21  SNPNLCIASQLSTLSILSFTGEKIGETYLDLKSAPPETARAVVH 64


>ref|XP_007016159.1| 50S ribosomal protein L4 isoform 1 [Theobroma cacao]
           gi|508786522|gb|EOY33778.1| 50S ribosomal protein L4
           isoform 1 [Theobroma cacao]
          Length = 303

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/44 (75%), Positives = 38/44 (86%)
 Frame = +3

Query: 228 NSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           ++P + I S+L+TL ILSF GEKIGETYLDLKSAPP TARAVVH
Sbjct: 38  SNPNLCIASQLSTLSILSFTGEKIGETYLDLKSAPPETARAVVH 81


>ref|XP_002309469.2| hypothetical protein POPTR_0006s23770g [Populus trichocarpa]
           gi|550336953|gb|EEE92992.2| hypothetical protein
           POPTR_0006s23770g [Populus trichocarpa]
          Length = 290

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 32/38 (84%), Positives = 34/38 (89%)
 Frame = +3

Query: 246 IRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           I  ++ATLPILSF GEKIGETYLDLKSAPP TARAVVH
Sbjct: 43  ISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVH 80


>ref|NP_001030985.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
           gi|79317147|ref|NP_001030986.1| 50S ribosomal protein L4
           [Arabidopsis thaliana]
           gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34
           [Arabidopsis thaliana] gi|222423413|dbj|BAH19678.1|
           AT1G07320 [Arabidopsis thaliana]
           gi|332189987|gb|AEE28108.1| 50S ribosomal protein L4
           [Arabidopsis thaliana] gi|332189988|gb|AEE28109.1| 50S
           ribosomal protein L4 [Arabidopsis thaliana]
          Length = 278

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPILSF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVH 84


>ref|NP_849604.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
           gi|332189986|gb|AEE28107.1| 50S ribosomal protein L4
           [Arabidopsis thaliana]
          Length = 280

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPILSF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVH 84


>gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana]
          Length = 282

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPILSF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVH 84


>emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana]
           gi|2792000|emb|CAA74894.1| ribosomal protein L4
           [Arabidopsis thaliana]
          Length = 282

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPILSF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVH 84


>ref|NP_563786.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
           gi|21542429|sp|O50061.2|RK4_ARATH RecName: Full=50S
           ribosomal protein L4, chloroplastic; AltName: Full=CL4;
           AltName: Full=R-protein L4; Flags: Precursor
           gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis
           thaliana] gi|21436209|gb|AAM51392.1| unknown protein
           [Arabidopsis thaliana] gi|110741117|dbj|BAE98652.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332189985|gb|AEE28106.1| 50S ribosomal protein L4
           [Arabidopsis thaliana]
          Length = 282

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPILSF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVH 84


>ref|XP_006417815.1| hypothetical protein EUTSA_v10008395mg [Eutrema salsugineum]
           gi|557095586|gb|ESQ36168.1| hypothetical protein
           EUTSA_v10008395mg [Eutrema salsugineum]
          Length = 286

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPI+SF+GEKIGETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVASQLATLPIISFEGEKIGETYLDLKTAPEDTARAVVH 84


>ref|XP_006417814.1| hypothetical protein EUTSA_v10008395mg [Eutrema salsugineum]
           gi|557095585|gb|ESQ36167.1| hypothetical protein
           EUTSA_v10008395mg [Eutrema salsugineum]
          Length = 284

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPI+SF+GEKIGETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVASQLATLPIISFEGEKIGETYLDLKTAPEDTARAVVH 84


>ref|XP_006305486.1| hypothetical protein CARUB_v10009944mg [Capsella rubella]
           gi|482574197|gb|EOA38384.1| hypothetical protein
           CARUB_v10009944mg [Capsella rubella]
          Length = 283

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 30/43 (69%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPI+SF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVASQLATLPIISFEGEKVGETYLDLKTAPEDTARAVVH 84


>ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp.
           lyrata] gi|297335482|gb|EFH65899.1| hypothetical protein
           ARALYDRAFT_470751 [Arabidopsis lyrata subsp. lyrata]
          Length = 280

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 30/43 (69%), Positives = 37/43 (86%)
 Frame = +3

Query: 231 SPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           S  + + S+LATLPI+SF+GEK+GETYLDLK+AP  TARAVVH
Sbjct: 42  SKPLSVASQLATLPIISFEGEKVGETYLDLKTAPEDTARAVVH 84


>gb|EMT00761.1| 50S ribosomal protein L4, chloroplastic [Aegilops tauschii]
          Length = 283

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
 Frame = +3

Query: 198 PFSHSQTLNPNSPRI-FIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           PF H   L P++  +  +R+E  TLP+++F GEK+GE  LD+K+APP+TARAVVH
Sbjct: 5   PFPHQAALRPSASILRALRAEATTLPVINFTGEKVGEVALDIKAAPPSTARAVVH 59


>emb|CAA63651.1| ribosomal protein L4 [Spinacia oleracea]
          Length = 293

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = +3

Query: 204 SHSQTLNPNSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           SHSQT    S  + I+SEL  LPIL+F GEK+GET+L+LK+APP  ARAVVH
Sbjct: 38  SHSQT----SLSLSIKSELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVH 85


>sp|O49937.1|RK4_SPIOL RecName: Full=50S ribosomal protein L4, chloroplastic;
           Short=R-protein L4; Flags: Precursor
           gi|189096129|pdb|3BBO|G Chain G, Homology Model For The
           Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em
           Map Of The 70s Chlororibosome gi|2792007|emb|CAA75149.1|
           chloroplast ribosomal protein L4 [Spinacia oleracea]
          Length = 293

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = +3

Query: 204 SHSQTLNPNSPRIFIRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           SHSQT    S  + I+SEL  LPIL+F GEK+GET+L+LK+APP  ARAVVH
Sbjct: 38  SHSQT----SLSLSIKSELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVH 85


>tpg|DAA44542.1| TPA: 50S ribosomal protein L4 [Zea mays]
          Length = 314

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +3

Query: 246 IRSELATLPILSFDGEKIGETYLDLKSAPPATARAVVH 359
           +R+E ATLP+LSF GEK+GE  LDLKSAPP+TARAVVH
Sbjct: 55  LRAEAATLPVLSFTGEKVGEVTLDLKSAPPSTARAVVH 92