BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00027462
         (566 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADU03655.1| RdRp [Cordyline virus 1]                                58   2e-06
ref|NP_835244.2| polyprotein [Grapevine rootstock stem lesion as...    56   6e-06
ref|NP_835337.1| replicase [Grapevine rootstock stem lesion asso...    56   6e-06
gb|AAN63467.1|AF314061_2 RNA-dependent RNA polymerase [grapevine...    56   6e-06
ref|YP_004935919.1| RdRp gene product, partial [Grapevine leafro...    56   6e-06
gb|AEQ59444.1| RdRp [Grapevine leafroll-associated virus 7]            56   7e-06
dbj|BAM29350.1| RNA dependent RNA polymerase [Grapevine leafroll...    55   1e-05
ref|YP_762622.1| RdRp [Strawberry chlorotic fleck-associated vir...    55   1e-05

>gb|ADU03655.1| RdRp [Cordyline virus 1]
          Length = 519

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
 Frame = -3

Query: 489 FSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNPTVRKYL--ELDGAMFD 316
           FSP+  E   R+   L+PNV++    +  +++E +     R    +  Y   E+D + FD
Sbjct: 234 FSPIFLEIFSRISYCLRPNVVIFSGMNLDELAEVI---QTRLRFPIDSYYCCEIDFSKFD 290

Query: 315 KSQGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKVATPPERETGQYDTL 136
           KSQG++ K     +   FK  P +    + S   + A S  +GVKV    +R TG  +T 
Sbjct: 291 KSQGVIMKMYEEIVYKFFKFSPNVYDNFKISEYFVKARS-ASGVKVDLFAQRRTGSPNTF 349

Query: 135 DGNSDVSLAIYATFFASILEYIEFIMVMGDD 43
             NS V+L + + ++   L+  + ++V GDD
Sbjct: 350 LSNSIVTLGLISNYYD--LDDFDLVLVSGDD 378


>ref|NP_835244.2| polyprotein [Grapevine rootstock stem lesion associated virus]
          Length = 3390

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 45/171 (26%), Positives = 78/171 (45%)
 Frame = -3

Query: 537  PAQSIAYDPTGKRVALFSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNP 358
            PAQ+I +       A+FSP+  E   R++S LKPN+      +  D +  +       + 
Sbjct: 3059 PAQNIMFHRKSIN-AIFSPIFNEVKNRIMSCLKPNIKFFTEMTNRDFASVVSNM--LGDD 3115

Query: 357  TVRKYLELDGAMFDKSQGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKV 178
             V    E+D + +DKSQ    KS    +     V  ELL +        +A+++   +  
Sbjct: 3116 DVYHIGEVDFSKYDKSQDAFVKSFEEVMYKELGVDEELLAIWMCGERLSIANTLDGQLSF 3175

Query: 177  ATPPERETGQYDTLDGNSDVSLAIYATFFASILEYIEFIMVMGDDVTVAVR 25
                +R++G  +T  GNS V+L I + ++   + + E + V GDD  +  R
Sbjct: 3176 TIENQRKSGASNTWIGNSLVTLGILSLYYD--VRHFEALYVSGDDSLIFSR 3224


>ref|NP_835337.1| replicase [Grapevine rootstock stem lesion associated virus]
          Length = 2549

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 45/171 (26%), Positives = 78/171 (45%)
 Frame = -3

Query: 537  PAQSIAYDPTGKRVALFSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNP 358
            PAQ+I +       A+FSP+  E   R++S LKPN+      +  D +  +       + 
Sbjct: 2218 PAQNIMFHRKSIN-AIFSPIFNEVKNRIMSCLKPNIKFFTEMTNRDFASVVSNM--LGDD 2274

Query: 357  TVRKYLELDGAMFDKSQGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKV 178
             V    E+D + +DKSQ    KS    +     V  ELL +        +A+++   +  
Sbjct: 2275 DVYHIGEVDFSKYDKSQDAFVKSFEEVMYKELGVDEELLAIWMCGERLSIANTLDGQLSF 2334

Query: 177  ATPPERETGQYDTLDGNSDVSLAIYATFFASILEYIEFIMVMGDDVTVAVR 25
                +R++G  +T  GNS V+L I + ++   + + E + V GDD  +  R
Sbjct: 2335 TIENQRKSGASNTWIGNSLVTLGILSLYYD--VRHFEALYVSGDDSLIFSR 2383


>gb|AAN63467.1|AF314061_2 RNA-dependent RNA polymerase [grapevine rootstock stem lesion
           associated virus]
          Length = 459

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 45/171 (26%), Positives = 78/171 (45%)
 Frame = -3

Query: 537 PAQSIAYDPTGKRVALFSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNP 358
           PAQ+I +       A+FSP+  E   R++S LKPN+      +  D +  +       + 
Sbjct: 128 PAQNIMFHRKSIN-AIFSPIFNEVKNRIMSCLKPNIKFFTEMTNRDFASVVSNM--LGDD 184

Query: 357 TVRKYLELDGAMFDKSQGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKV 178
            V    E+D + +DKSQ    KS    +     V  ELL +        +A+++   +  
Sbjct: 185 DVYHIGEVDFSKYDKSQDAFVKSFEEVMYKELGVDEELLAIWMCGERLSIANTLDGQLSF 244

Query: 177 ATPPERETGQYDTLDGNSDVSLAIYATFFASILEYIEFIMVMGDDVTVAVR 25
               +R++G  +T  GNS V+L I + ++   + + E + V GDD  +  R
Sbjct: 245 TIENQRKSGASNTWIGNSLVTLGILSLYYD--VRHFEALYVSGDDSLIFSR 293


>ref|YP_004935919.1| RdRp gene product, partial [Grapevine leafroll-associated virus 7]
           gi|346983347|emb|CCD33051.1| RNA dependent RNA
           polymerase, partial [Grapevine leafroll-associated virus
           7]
          Length = 505

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 48/149 (32%), Positives = 70/149 (46%)
 Frame = -3

Query: 489 FSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNPTVRKYLELDGAMFDKS 310
           FSPV  E + R+   LK N+++    + +++   +      P P+   Y ELD + FDKS
Sbjct: 220 FSPVFLEIMGRIKYCLKDNIVLYGGMNLSELGSVIKSKLTDPLPSYN-YTELDFSKFDKS 278

Query: 309 QGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKVATPPERETGQYDTLDG 130
           QG + K     +   FK  P      + S     ASS   GVKV     R TG  +T   
Sbjct: 279 QGSIIKMYEEMVYKFFKFSPNTYDNFKLSEYFCQASS-NCGVKVDLFSSRRTGSPNTWLS 337

Query: 129 NSDVSLAIYATFFASILEYIEFIMVMGDD 43
           N+  +LAI +  +   LE  + I+V GDD
Sbjct: 338 NTLCTLAILSATYQ--LEDYDLILVSGDD 364


>gb|AEQ59444.1| RdRp [Grapevine leafroll-associated virus 7]
          Length = 475

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 48/149 (32%), Positives = 70/149 (46%)
 Frame = -3

Query: 489 FSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNPTVRKYLELDGAMFDKS 310
           FSPV  E + R+   LK N+++    + +++   +      P P+   Y ELD + FDKS
Sbjct: 190 FSPVFLEIMGRIKYCLKDNIVLYGGMNLSELGSVIKSKLTDPLPSYN-YTELDFSKFDKS 248

Query: 309 QGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKVATPPERETGQYDTLDG 130
           QG + K     +   FK  P      + S     ASS   GVKV     R TG  +T   
Sbjct: 249 QGSIIKMYEELVYKFFKFSPNTYDNFKLSEYFCQASS-NCGVKVDLFSSRRTGSPNTWLS 307

Query: 129 NSDVSLAIYATFFASILEYIEFIMVMGDD 43
           N+  +LAI +  +   LE  + I+V GDD
Sbjct: 308 NTLCTLAILSATYQ--LEDYDLILVSGDD 334


>dbj|BAM29350.1| RNA dependent RNA polymerase [Grapevine leafroll-associated virus
           7]
          Length = 475

 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 48/149 (32%), Positives = 69/149 (46%)
 Frame = -3

Query: 489 FSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNPTVRKYLELDGAMFDKS 310
           FSPV  E + R+   LK N+++    +  ++   +      P P+   Y ELD + FDKS
Sbjct: 190 FSPVFLEIMGRIKYCLKDNIVLYGGMNLTELGSVIKSKLTDPLPSYN-YTELDFSKFDKS 248

Query: 309 QGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKVATPPERETGQYDTLDG 130
           QG + K     +   FK  P      + S     ASS   GVKV     R TG  +T   
Sbjct: 249 QGSIIKMYEELVYKFFKFSPNTYDNFKLSEYFCKASS-NCGVKVDLFSSRRTGSPNTWLS 307

Query: 129 NSDVSLAIYATFFASILEYIEFIMVMGDD 43
           N+  +LAI +  +   LE  + I+V GDD
Sbjct: 308 NTLCTLAILSATYQ--LEDYDLILVSGDD 334


>ref|YP_762622.1| RdRp [Strawberry chlorotic fleck-associated virus]
           gi|112817664|gb|ABI23191.1| RdRp [Strawberry chlorotic
           fleck-associated virus]
          Length = 469

 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 45/165 (27%), Positives = 74/165 (44%)
 Frame = -3

Query: 537 PAQSIAYDPTGKRVALFSPVIAEKVKRMLSTLKPNVLVMQRKSPADISEFLCRFDHRPNP 358
           PAQ+I +       A+FSPV  E   R+L  L  N++     +    S+ L R     + 
Sbjct: 128 PAQNIMFHRKAVN-AIFSPVFDEFKNRVLYCLNSNIVFFTEMTNDHFSQILRRL--LGDQ 184

Query: 357 TVRKYLELDGAMFDKSQGLMAKSMHWNLLAMFKVLPELLQMIEASGSALVASSIQAGVKV 178
            V    E+D + FDKSQ +  K     L   F +  ELL +      +  A+++   +  
Sbjct: 185 DVYNVGEIDFSKFDKSQDIFVKEYERTLYEAFGIDSELLNVWMQGEYSAKATTLDGSLSF 244

Query: 177 ATPPERETGQYDTLDGNSDVSLAIYATFFASILEYIEFIMVMGDD 43
           +   +R +G  +T  GNS V+L I A ++   +     + + GDD
Sbjct: 245 SVDNQRRSGGSNTWIGNSLVTLGIIALYYD--VSKFRLLAISGDD 287