BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00027356
         (702 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein A...    61   2e-07
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    53   5e-07
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    60   9e-07
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A...    58   3e-06
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    56   6e-06
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A...    57   8e-06

>ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 364

 Score = 61.2 bits (147), Expect(2) = 2e-07
 Identities = 33/94 (35%), Positives = 52/94 (55%)
 Frame = -1

Query: 444 LDDMIDWTPNSRGMFSFKST*DALRDKGPQLSWKNVI*TRKKIPLHLLIAWLVVQKGLLT 265
           + D + W P S G  S K     LR + P L W  +I ++  IP   L +W V++  +L+
Sbjct: 1   MSDKLIWVPLSSGELSAKEAFQFLRPRLPSLDWGKLIWSKFIIPRISLHSWKVLRGRVLS 60

Query: 264 IENLKKRGMSMASKCILCEGTPEGKDHPLLTMSF 163
            + L++RG+++AS+C+LC    E   H  LT SF
Sbjct: 61  EDLLQRRGIALASRCVLCGRDGESLPHIFLTCSF 94



 Score = 20.8 bits (42), Expect(2) = 2e-07
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 182 LFLQCPFSCWIWRSVLGEF 126
           +FL C F+  +W +  G F
Sbjct: 88  IFLTCSFAASLWNNRAGLF 106


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 52.8 bits (125), Expect(2) = 5e-07
 Identities = 29/93 (31%), Positives = 43/93 (46%)
 Frame = -1

Query: 462 VVPSQKLDDMIDWTPNSRGMFSFKST*DALRDKGPQLSWKNVI*TRKKIPLHLLIAWLVV 283
           V PS  ++DM    P S   FS  S  +A+R    ++ W  ++     IP H    WL +
Sbjct: 163 VRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAI 222

Query: 282 QKGLLTIENLKKRGMSMASKCILCEGTPEGKDH 184
           +  L T + L +   S+   CILC    E +DH
Sbjct: 223 KDRLGTRDRLSRWDSSIPLSCILCGRNYESRDH 255



 Score = 27.7 bits (60), Expect(2) = 5e-07
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = -2

Query: 182 LFLQCPFSCWIWRSVL----GEFGIRHWGV 105
           LF  CPF   IW  +L        IR+WGV
Sbjct: 256 LFFPCPFGWEIWSRILLFMSSSHRIRYWGV 285


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 59.7 bits (143), Expect = 9e-07
 Identities = 29/93 (31%), Positives = 45/93 (48%)
 Frame = -1

Query: 462 VVPSQKLDDMIDWTPNSRGMFSFKST*DALRDKGPQLSWKNVI*TRKKIPLHLLIAWLVV 283
           V PS  ++D   W P SR  FS  S  + +R    ++ W  ++     IP H   AWL +
Sbjct: 161 VRPSPSVEDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAI 220

Query: 282 QKGLLTIENLKKRGMSMASKCILCEGTPEGKDH 184
           +  L T + L +   S+   C+LC G  E ++H
Sbjct: 221 RDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNH 253


>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 872

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
 Frame = -1

Query: 657 WRGVLFVWEEASKNIKFIVGNSYNTLLWLD-----------GNIIACKFSTT-------R 532
           W GV   W     N +++VG       W D           GN  A   +++        
Sbjct: 405 WPGVRKFWGLVQNNTRWLVGTGDKISFWRDNFLGRPLIEFFGNHGALNDNSSLVSDYIDN 464

Query: 531 *KWILPQPHDYRLH*VRDLIMKQVVP-SQKLDDMIDWTPNSRGMFSFKST*DALRDKGPQ 355
             W+LP      L  V +LI +  +  +  ++D + W  +S G  + K     L+   P 
Sbjct: 465 GSWVLPPLLQLNLSAVCNLICQVPISINPSMEDKLIWQASSTGELTAKQAFLFLQQASPV 524

Query: 354 LSWKNVI*TRKKIPLHLLIAWLVVQKGLLTIENLKKRGMSMASKCILCEGTPEGKDHPLL 175
           + W   + ++  +P   L AW V++  +++   L++RG+++ S+C  C  + E  DH  L
Sbjct: 525 VPWGKPLWSKFILPRMSLHAWKVMRGTVISYHLLQRRGVALVSRCEFCGNSTESLDHIFL 584

Query: 174 TMSF 163
             SF
Sbjct: 585 HCSF 588


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 55.8 bits (133), Expect(2) = 6e-06
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
 Frame = -1

Query: 474 IMKQVVPSQKL------DDMIDWTPNSRG---MFSFKST*DALRDKGPQLSWKNVI*TRK 322
           ++K V+PS +       DD+  W P+      +FS   T  AL   G  + W+  +  + 
Sbjct: 103 LLKSVLPSSESMIECQHDDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKD 162

Query: 321 KIPLHLLIAWLVVQKGLLTIENLKKRGMSMASKCILCEGTPEGKDHPLLTMSF 163
           +IP H  I W+   K L T + L + G+++ + C+LC    E  DH      F
Sbjct: 163 RIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQF 215



 Score = 20.8 bits (42), Expect(2) = 6e-06
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 182 LFLQCPFSCWIW 147
           LF QC FS  IW
Sbjct: 209 LFFQCQFSNEIW 220


>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 397

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
 Frame = -1

Query: 441 DDMIDWTPNSRGMFSFKST*DALRDKGPQ---LSWKNVI*TRKKIPLHLLI-AWLVVQKG 274
           +D + W  +++G+F+  S    +   G Q   L WK +   + KIP  +++  WLVV++ 
Sbjct: 201 EDTLKWKCHNKGLFTVSSAYRNMNQMGSQVNFLPWKLI--WKVKIPYKVVVFTWLVVKEA 258

Query: 273 LLTIENLKKRGMSMASKCILCEGTPEGKDHPLL 175
           +LT ENL KRG+ M  +C  CE   E  +H  L
Sbjct: 259 VLTQENLMKRGIQMCPRCCFCEQVAETINHLFL 291