BLASTX nr result
ID: Akebia27_contig00024980
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00024980
(943 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG22123.1| polyprotein [Prunus avium] 465 e-128
gb|ABG22121.1| polyprotein [Solanum melongena] 456 e-126
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 397 e-108
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 397 e-108
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 394 e-107
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 392 e-107
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 388 e-105
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 388 e-105
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 384 e-104
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 384 e-104
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 381 e-103
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 381 e-103
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 380 e-103
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 380 e-103
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera] 379 e-103
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 379 e-103
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 379 e-102
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 378 e-102
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 376 e-102
gb|AFB73912.1| polyprotein [Citrus sinensis] 375 e-101
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 465 bits (1197), Expect = e-128
Identities = 229/276 (82%), Positives = 251/276 (90%)
Frame = -3
Query: 899 YVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVKGRVWLSQKQYLK 720
YVDDMLI KSKVEI++LKTQLSNEFEMKDLGEA+KILGMEI+RDR KG++ L QKQYLK
Sbjct: 1 YVDDMLIVCKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLK 60
Query: 719 KVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASVVGSLMYAMVCTR 540
KVLQRF M+EN+KPVSTPLAPHFKLSA MSP TD E YM Q+PYAS VGSLMYAMVCTR
Sbjct: 61 KVLQRFGMNENSKPVSTPLAPHFKLSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTR 120
Query: 539 PDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRFGQHAVGYVDSDY 360
PDISQAVS+VSRYMH+PGKGHWQA KWILRYILGTVD GL+F+++ GQ VGYVDSDY
Sbjct: 121 PDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDY 180
Query: 359 AGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIWLRGLIED 180
AGDLDKRRSTTG+VFT+AGGPVSWRS LQSTVALSTTEAEYMAVTEAIKEAIWL+GL++D
Sbjct: 181 AGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDD 240
Query: 179 LGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVR 72
LG+ Q HV VYCDSQSAI+LAKNQVHH RTKHIDVR
Sbjct: 241 LGVQQDHVDVYCDSQSAIYLAKNQVHHARTKHIDVR 276
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 456 bits (1173), Expect = e-126
Identities = 223/290 (76%), Positives = 257/290 (88%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
F KL +GS++YLLLYVDDMLIA+KS+ EID+LK QLS EFEMKDLGEAKKILGMEI RDR
Sbjct: 72 FHKLQNGSYVYLLLYVDDMLIAAKSQFEIDRLKAQLSKEFEMKDLGEAKKILGMEISRDR 131
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
+G++ L+QKQYLKKVLQRF +++++KPVSTPLAPH KLS+ +SP TD EREYM +VPYA
Sbjct: 132 QRGKLCLTQKQYLKKVLQRFGINDDSKPVSTPLAPHLKLSSQLSPKTDEEREYMAKVPYA 191
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
+ VGSLMYAMVCTR DISQAVS+VSRYMHDPGKGHWQA KWILRYI TVD GL+FE++
Sbjct: 192 NAVGSLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDK 251
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
G VGY DSDYAGDLDKRRSTTGY+FTLA GPVSW+STLQ+TVALSTTEAEYMA+TE
Sbjct: 252 SLGSCVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITE 311
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVR 72
A+KEAIWL GL+E+LG+ QKH++V+ DSQSAIHLAKNQV H RTKHIDVR
Sbjct: 312 AVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLAKNQVFHARTKHIDVR 361
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 397 bits (1021), Expect = e-108
Identities = 199/311 (63%), Positives = 247/311 (79%)
Frame = -3
Query: 935 KLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVK 756
K +GS IYLLLYVDDMLIA+KSK+EI KLK LS+EF+MKDLG AKKILGMEI RDR
Sbjct: 1004 KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKS 1063
Query: 755 GRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASV 576
G ++LSQ Y+KKVLQRF+M +N K VSTP+APHFKLSA P TDAE EYM++VPY+S
Sbjct: 1064 GLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSA 1122
Query: 575 VGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRF 396
VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A +WI RY+ GT + L F R D+
Sbjct: 1123 VGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDK- 1181
Query: 395 GQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAI 216
+GYVDSDYA DLD+RRS TGYVFT+ VSWR+TLQS VALSTTEAEYMA+ EA
Sbjct: 1182 --GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEAC 1239
Query: 215 KEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGD 36
KE IWL+GL +L ++ + ++CDSQSAI+L K+Q+ H RTKHID+++HFVR++++EG
Sbjct: 1240 KELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGK 1299
Query: 35 ILLQKIGTADN 3
+ + KI T DN
Sbjct: 1300 LKVCKICTHDN 1310
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 397 bits (1019), Expect = e-108
Identities = 198/311 (63%), Positives = 246/311 (79%)
Frame = -3
Query: 935 KLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVK 756
K +GS IYLLLYVDDMLIA+KSK+EI KLK LS+EF+MKDLG AKKILGMEI RDR
Sbjct: 1002 KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKS 1061
Query: 755 GRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASV 576
G ++LSQ Y+KKVLQRF+M +N K VSTP+APHFKLSA P DAE EYM++VPY+S
Sbjct: 1062 GLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSA 1120
Query: 575 VGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRF 396
VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A +WI RY+ GT + L F R D+
Sbjct: 1121 VGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDK- 1179
Query: 395 GQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAI 216
+GYVDSDYA DLD+RRS TGYVFT+ VSWR+TLQS VALSTTEAEYMA+ EA
Sbjct: 1180 --GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEAC 1237
Query: 215 KEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGD 36
KE IWL+GL +L ++ + ++CDSQSAI+L K+Q+ H RTKHID+++HFVR++++EG
Sbjct: 1238 KELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGK 1297
Query: 35 ILLQKIGTADN 3
+ + KI T DN
Sbjct: 1298 LKVCKISTHDN 1308
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 394 bits (1012), Expect = e-107
Identities = 197/311 (63%), Positives = 245/311 (78%)
Frame = -3
Query: 935 KLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVK 756
K +GS IYLLLYVDDMLIA+KSK+EI KLK LS+EF+MKDLG AKKIL MEI RDR
Sbjct: 1002 KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKS 1061
Query: 755 GRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASV 576
G ++LSQ Y+KKVLQRF+M +N K VSTP+APHFKLSA P TDAE EYM++VPY+S
Sbjct: 1062 GLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSA 1120
Query: 575 VGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRF 396
VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+ +WI RY+ GT + L F R D+
Sbjct: 1121 VGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDK- 1179
Query: 395 GQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAI 216
+GYVDSDYA DLD+RRS TGYVFT+ VSWR+TLQS VALSTTEAEYMA+ EA
Sbjct: 1180 --GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEAC 1237
Query: 215 KEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGD 36
KE IWL+GL +L ++ + ++CDSQSAI+L K+Q+ H RTKHID+++HFVR++++EG
Sbjct: 1238 KELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGK 1297
Query: 35 ILLQKIGTADN 3
+ + KI T DN
Sbjct: 1298 LKVCKISTHDN 1308
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 392 bits (1008), Expect = e-107
Identities = 189/272 (69%), Positives = 229/272 (84%)
Frame = -3
Query: 818 MKDLGEAKKILGMEIKRDRVKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSA 639
MK LG+A++ILGM+I+RD+ VWL+QK YLKKVL+RF MD+ TK V TPLA HFKLS+
Sbjct: 1 MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60
Query: 638 LMSPCTDAEREYMNQVPYASVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKW 459
P + ER+YM VPYASVVGSL+YAMVCTRPDISQAVSMVSRYMH+PGK W A KW
Sbjct: 61 SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120
Query: 458 ILRYILGTVDTGLMFERNDRFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRST 279
ILRY+ GTVD GL+F++N GQ VGY DSD+AGDLDK+RST+GYVFTL GG VSWRS
Sbjct: 121 ILRYLYGTVDVGLLFKKN--CGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSI 178
Query: 278 LQSTVALSTTEAEYMAVTEAIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHH 99
LQST+ALSTTEAEY+A TEA+KEAIWL+GL+ DLG+IQ+++ V+CD+QSAI LAKNQ +H
Sbjct: 179 LQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYH 238
Query: 98 TRTKHIDVRFHFVREIVDEGDILLQKIGTADN 3
RTKHIDV++H+VREI++ GD+LL+KI T DN
Sbjct: 239 ARTKHIDVKYHYVREIIEGGDVLLKKIDTKDN 270
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 388 bits (997), Expect = e-105
Identities = 193/303 (63%), Positives = 241/303 (79%)
Frame = -3
Query: 935 KLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVK 756
K +GS IYLLLYVDDMLIA+KSK+EI KLK LS+EF+MKDLG AKKILGMEI RDR
Sbjct: 1002 KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKS 1061
Query: 755 GRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASV 576
G ++LSQ Y+KKVLQRF+M +N K VSTP+APHFKLSA P DAE EYM++VPY+S
Sbjct: 1062 GLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSA 1120
Query: 575 VGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRF 396
VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A +WI RY+ GT + L F R D+
Sbjct: 1121 VGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDK- 1179
Query: 395 GQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAI 216
+GYVDSDYA DLD+RRS TGYVFT+ VSWR+TLQS VALSTTEAEYMA+ EA
Sbjct: 1180 --GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEAC 1237
Query: 215 KEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGD 36
KE IWL+GL +L ++ + ++CDS+SAI+L K+Q+ H RTKHID+++HFVR++++E D
Sbjct: 1238 KELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIEEDD 1297
Query: 35 ILL 27
L+
Sbjct: 1298 WLI 1300
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 388 bits (996), Expect = e-105
Identities = 196/313 (62%), Positives = 249/313 (79%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+ K+ DGS IYLLLYVDDMLIA+K K EI KLK QLS+EFEMKDLG AKKILG+EI ++R
Sbjct: 805 YPKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGIEITKER 864
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
G+++LSQK Y++KVL+RF+M + KPVSTPLA HF+LS+ + P +D + EYM++VPY+
Sbjct: 865 HSGKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYS 923
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
SVVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A +WI RY+ GT L F R+
Sbjct: 924 SVVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGRS- 982
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
R G VGYVDSD+AGDLD+RRS GYVFT+ G VSW++ LQ+TVALSTTEAEYMA++E
Sbjct: 983 RDG--LVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISE 1040
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KE IWLRGL +L + + ++CDSQSAI L K+Q+ H RTKHIDVR+HF+R ++ E
Sbjct: 1041 ACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITE 1100
Query: 41 GDILLQKIGTADN 3
GD+ + KI T DN
Sbjct: 1101 GDVKVCKISTHDN 1113
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 384 bits (986), Expect = e-104
Identities = 195/313 (62%), Positives = 248/313 (79%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+ K+ DGS IYLLLYVDDMLIA+K K EI+KLK QLS+EFEMKDLG AKKILGMEI R+R
Sbjct: 878 YLKVVDGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRER 937
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
G+++LSQK Y++KVL+RF+M + KPVSTPLA HF+LS+ + P +D + EYM++VPY
Sbjct: 938 HSGKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYL 996
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
SVVGSLMYAMVC+R D+S A+S+VSRYM +PGK HW+ +WI +Y+ GT L F R+
Sbjct: 997 SVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRS- 1055
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
R G VGYVDSD+AGDLD+RRS TGYVFT+ G VSW+++LQ+TVALSTTE EYMA++E
Sbjct: 1056 RDG--LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISE 1113
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIWLRGL +L + + ++CDSQSAI K+Q+ H RTKHIDVR+HF+R ++ E
Sbjct: 1114 ACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAE 1173
Query: 41 GDILLQKIGTADN 3
GD+ + KI T DN
Sbjct: 1174 GDVKVCKISTHDN 1186
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 384 bits (985), Expect = e-104
Identities = 192/309 (62%), Positives = 239/309 (77%), Gaps = 1/309 (0%)
Frame = -3
Query: 926 DGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVKGRV 747
DG I LLLYVDDMLIA + ++I KLK +L EF+MKDLG A+KILG+EI+RDR G++
Sbjct: 971 DGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKI 1030
Query: 746 WLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASVVGS 567
WLSQ++Y+ K+L+RF+M E K VS PLA HF+LSA P E + M VPYAS VG
Sbjct: 1031 WLSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGC 1089
Query: 566 LMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRFGQH 387
LMYAM+CTRPD++QA+S+VS+YM +PGK HW+A KWI +Y+ T G+MFER R G+
Sbjct: 1090 LMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER--RQGEA 1147
Query: 386 AV-GYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAIKE 210
V G+VDSD+AGDLD+RRST GYVFT GGPVSW++TLQ+ ALSTTEAEYMA+TEA KE
Sbjct: 1148 CVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKE 1207
Query: 209 AIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGDIL 30
AIWL GL LG+ Q+ VVV CDSQSAIHLAKNQV H RTKHID R+H +R+ V+ G I+
Sbjct: 1208 AIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVII 1267
Query: 29 LQKIGTADN 3
++K+ T DN
Sbjct: 1268 VEKVHTDDN 1276
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 381 bits (979), Expect = e-103
Identities = 191/313 (61%), Positives = 241/313 (76%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ DG FI LLLYVDDML+ +K + +LK QL+ EF+MKDLG A KILGM+I RDR
Sbjct: 971 YKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YL+KVL+RF+M ++ P+STPL ++KLS+ M P ++AER M++VPYA
Sbjct: 1031 KDRKIWLSQKNYLQKVLRRFNM-QDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYA 1089
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAM+CTRPDI+QAV VSR+M DPGK HW A K ILRYI GT L F ++
Sbjct: 1090 SAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSE 1149
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GYVDSD+AGDLDKR+STTGYVFTLAGG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1150 FTIR---GYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW + L+E+LG Q+ + VYCDS SA+H+A+N H+RTKHI V++HFVRE+V+E
Sbjct: 1207 ACKEAIWTQRLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 41 GDILLQKIGTADN 3
G + +QKI T DN
Sbjct: 1267 GSVNMQKIHTKDN 1279
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 381 bits (978), Expect = e-103
Identities = 190/313 (60%), Positives = 242/313 (77%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ FI LLLYVDDML+ +K + +LK QL+ EF+MKDLG A KILGM+I RDR
Sbjct: 971 YKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YL+KVL+RF+M ++ KP+STPL +FKLS+ MSP +AER M++VPYA
Sbjct: 1031 KDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYA 1089
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAM+CTRPDI+QAV +VSR+M DPGK HW A K I+RYI GT + F ++
Sbjct: 1090 SAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE 1149
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GYVDSD+AGD DKR+STTGYVFTLAGG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1150 LTVR---GYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW++ L+E+LG Q+ + VYCDSQSA+H+A+N H+RTKHI V++HFVRE+V+E
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 41 GDILLQKIGTADN 3
G + +QKI T DN
Sbjct: 1267 GSVDMQKIHTNDN 1279
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 380 bits (977), Expect = e-103
Identities = 190/313 (60%), Positives = 241/313 (76%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ FI LLLYVDDML+ +K + +LK QL+ EF+MKDLG A KILGM+I RDR
Sbjct: 971 YKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YL+KVL+RF+M ++ KP+STPL +FKLS+ MSP +AER M++VPYA
Sbjct: 1031 KDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYA 1089
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAM+CTRPDI+QAV +VSR+M DPGK HW A K I+RYI GT + F ++
Sbjct: 1090 SAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE 1149
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
GYVDSD+AGD DKR+STTGYVFTLAGG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1150 LT---VWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW++ L+E+LG Q+ + VYCDSQSA+H+A+N H+RTKHI V++HFVRE+V+E
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 41 GDILLQKIGTADN 3
G + +QKI T DN
Sbjct: 1267 GSVDMQKIHTNDN 1279
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 380 bits (977), Expect = e-103
Identities = 190/313 (60%), Positives = 242/313 (77%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ FI LLLYVDDML+ +K + +LK QL+ EF+MKDLG A KILGM+I RDR
Sbjct: 971 YKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YL+KVL+RF+M ++ KP+STPL +FKLS+ MSP +AER M++VPYA
Sbjct: 1031 KDMKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYA 1089
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAM+CTRPDI+QAV +VSR+M DPGK HW A K I+RYI GT + F ++
Sbjct: 1090 SAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE 1149
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GYVDSD+AGD DKR+STTGYVFTLAGG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1150 LTVR---GYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW++ L+E+LG Q+ + VYCDSQSA+H+A+N H+RTKHI V++HFVRE+V+E
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 41 GDILLQKIGTADN 3
G + +QKI T DN
Sbjct: 1267 GSVDMQKIHTNDN 1279
>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
Length = 406
Score = 379 bits (974), Expect = e-103
Identities = 185/308 (60%), Positives = 238/308 (77%)
Frame = -3
Query: 926 DGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVKGRV 747
D SFI+LLLYVDDMLI KS VE++KLK+ LS EF+MKDLG KKI+G+EI RDR GR+
Sbjct: 80 DSSFIFLLLYVDDMLIVVKSMVEVNKLKSLLSKEFDMKDLGVTKKIIGIEIHRDRALGRL 139
Query: 746 WLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASVVGS 567
WLSQ Y+K++L+RF+MD N KPVSTPLA HF+LS P TD E M++VPYAS VG
Sbjct: 140 WLSQHNYVKRMLERFNMD-NAKPVSTPLANHFRLSTSQCPKTDGEVNDMSKVPYASAVGC 198
Query: 566 LMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRFGQH 387
LMYAMVCTR D++ AVS+VS+++ +PG+ +W A KWI RY+ GT D G+ F +
Sbjct: 199 LMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQQS-DPS 257
Query: 386 AVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 207
GYVD+DYAGDLD+RRST GYVFTL GGP+ W+S +QS VAL TT++EYMA+ E KE+
Sbjct: 258 VKGYVDADYAGDLDERRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKES 317
Query: 206 IWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGDILL 27
+WL GL+++LGI Q V +Y D+QSAI+L KNQV+H RTKHIDVRFH + E+V G++LL
Sbjct: 318 LWLTGLVKELGIQQGGVQLYFDNQSAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLL 377
Query: 26 QKIGTADN 3
+K+ T++N
Sbjct: 378 KKVHTSEN 385
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 379 bits (973), Expect = e-103
Identities = 195/313 (62%), Positives = 245/313 (78%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+ K+ DGS IYLLLYVDDMLIA+K K EI KLK QLS+EFEMKDLG AKKILGMEI R R
Sbjct: 1206 YLKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKR 1265
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
+++LSQK Y++KVL+RF+M + KPVSTPLA HF+LS+ + P +D + EYM++VPY+
Sbjct: 1266 HSFKLYLSQKGYIEKVLRRFNMHD-AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYS 1324
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A +WI RY+ GT L F R+
Sbjct: 1325 SAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS- 1383
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
R G VGYVDSD+AGDLD+ RS GYVFT+ G VSW+++LQ+TVALSTTEAEYMA++E
Sbjct: 1384 RDG--LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISE 1441
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIWLRGL L + + ++CDSQSAI L K+Q+ H RTKHIDVR+HF+R ++ E
Sbjct: 1442 ACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAE 1501
Query: 41 GDILLQKIGTADN 3
GD+ + KI DN
Sbjct: 1502 GDVKICKISIHDN 1514
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 379 bits (972), Expect = e-102
Identities = 192/311 (61%), Positives = 240/311 (77%)
Frame = -3
Query: 935 KLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDRVK 756
K +GS IYLLLYVDDMLIA+KSK +I LK QLS+EF+MKDLG AKKILGMEI RDR
Sbjct: 991 KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNS 1050
Query: 755 GRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYASV 576
G ++LSQ+ Y+KKVLQRF+M + KPVSTP+APHFKLSAL TD + EYM++VPY+S
Sbjct: 1051 GLLFLSQQSYIKKVLQRFNMHD-AKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSA 1109
Query: 575 VGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERNDRF 396
VGSLMYAMVC+ PD+S A+S+VSRYM +PGK HW+A +WI RY+ GT D L F R D+
Sbjct: 1110 VGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDK- 1168
Query: 395 GQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTEAI 216
VGYVDSD+A DLDKRRS TGYVFT+ VSW++TLQ VA STTEAEYMA+ EA
Sbjct: 1169 --GLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEAC 1226
Query: 215 KEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDEGD 36
KE++WL+GL +L + + ++CDSQSAI L K+Q+ H RTKHID+++H+VR+IV +G
Sbjct: 1227 KESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGK 1286
Query: 35 ILLQKIGTADN 3
+ + KI DN
Sbjct: 1287 LKVCKISIHDN 1297
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 378 bits (970), Expect = e-102
Identities = 188/313 (60%), Positives = 241/313 (76%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ FI LLLYVDD+L+ +K + +LK QL+ EF+MKDLG A KILGM+I RDR
Sbjct: 971 YKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDR 1030
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YL+KVL+RF+M ++ KP+STPL +FKLS+ MSP +AER M++VPYA
Sbjct: 1031 KDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYA 1089
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAM+CTRPDI+QAV +VSR+M DPGK HW A K I+RYI GT + F ++
Sbjct: 1090 SAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE 1149
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GYVDSD+AGD DKR+STTGYVFTL GG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1150 LTVR---GYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQ 1206
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW++ L+E+LG Q+ + VYCDSQSA+H+A+N H+RTKHI V++HFVRE+V+E
Sbjct: 1207 ACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEE 1266
Query: 41 GDILLQKIGTADN 3
G + +QKI T DN
Sbjct: 1267 GSVDMQKIHTNDN 1279
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 376 bits (965), Expect = e-102
Identities = 192/313 (61%), Positives = 240/313 (76%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+ +L D SFIYL+LYVDDMLIA+K K +I KLK LS EFEMKDLG A+KILGMEI RDR
Sbjct: 975 YNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDR 1034
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
+ +++LSQ+ Y++KVL RF M ++KP+ TP A + L+A+ +P ++ E+EYM++VPYA
Sbjct: 1035 ERRKLFLSQRSYIQKVLARFGMS-SSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYA 1093
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLMYAMVCTRPD++ AVS+VSR+M PG+ HWQA K I RY+ GT D GL++ +
Sbjct: 1094 SAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDT 1153
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GY DSDYAGD+D RRS TGYVFTL G VSW++TLQ TV LSTTEAEYMA+TE
Sbjct: 1154 QC--LVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTE 1211
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KE IWL+GL+ DLG+ VYCDS SAI LAK+QVHH RTKHIDVR+HF+R E
Sbjct: 1212 AAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SE 1268
Query: 41 GDILLQKIGTADN 3
I ++K+GTADN
Sbjct: 1269 KRIKVKKVGTADN 1281
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 375 bits (962), Expect = e-101
Identities = 189/313 (60%), Positives = 242/313 (77%)
Frame = -3
Query: 941 FRKLCDGSFIYLLLYVDDMLIASKSKVEIDKLKTQLSNEFEMKDLGEAKKILGMEIKRDR 762
+++ D FI LLLYVDDML+A +K I +LK QL+ EFEMKDLG A KILGM+I RDR
Sbjct: 975 YKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDR 1034
Query: 761 VKGRVWLSQKQYLKKVLQRFDMDENTKPVSTPLAPHFKLSALMSPCTDAEREYMNQVPYA 582
++WLSQK YLKK+L+RF+M ++ K +STPL +FKLS+ M P +AER+ M++VPYA
Sbjct: 1035 NNRKIWLSQKNYLKKILRRFNM-QDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYA 1093
Query: 581 SVVGSLMYAMVCTRPDISQAVSMVSRYMHDPGKGHWQAAKWILRYILGTVDTGLMFERND 402
S VGSLM+AM+CTRPDI+QAV VSRYM +PG HW A K ILRYI GT + L + ++
Sbjct: 1094 SAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSE 1153
Query: 401 RFGQHAVGYVDSDYAGDLDKRRSTTGYVFTLAGGPVSWRSTLQSTVALSTTEAEYMAVTE 222
+ GYVDSD+AGDLDKR+STTGYVFTLAG VSW S LQ+ VALSTTEAEYMA T+
Sbjct: 1154 FTVR---GYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQ 1210
Query: 221 AIKEAIWLRGLIEDLGIIQKHVVVYCDSQSAIHLAKNQVHHTRTKHIDVRFHFVREIVDE 42
A KEAIW++ L+E+LG Q+ + V+CDSQSA+H+A+N H+RTKHI V++HFVRE+V++
Sbjct: 1211 ACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVED 1270
Query: 41 GDILLQKIGTADN 3
G + LQKI T +N
Sbjct: 1271 GSVDLQKIHTKEN 1283