BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00024535
         (1199 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              205   e-121
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]   192   e-112
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     193   e-108
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   193   e-108
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   193   e-107
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   171   e-102
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   171   e-102
gb|AAD17351.1| contains similarity to retrovirus-related polypro...   209   e-102
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   185   e-101
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         188   e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   184   e-100
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   180   e-100
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   182   2e-99
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   180   4e-99
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   196   7e-99
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   183   9e-99
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       184   9e-99
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594...   171   2e-98
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  183   3e-98
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  182   7e-98

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  205 bits (522), Expect(4) = e-121
 Identities = 96/119 (80%), Positives = 108/119 (90%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+TLLR +IKKN+KTWEDCLPHVEFAYN  +HSA+KFSPF+IVY FN  TPL+L PLP+
Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622



 Score =  143 bits (361), Expect(4) = e-121
 Identities = 64/104 (61%), Positives = 83/104 (79%)
 Frame = -3

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFL 784
            D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K   G Y+RHDGFL
Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370

Query: 783  FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            F +N+LC+PN ++RE  +RE+HGGGLMGHFGV+KT+ V Q+HF+
Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414



 Score =  134 bits (338), Expect(4) = e-121
 Identities = 62/85 (72%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++RIC RC TC+QAK++  PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF
Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA H+A
Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 42   LSECVNLDGKRKAE 1
            LSE V+LDGK+KAE
Sbjct: 1622 LSERVSLDGKKKAE 1635



 Score = 76.6 bits (187), Expect(2) = 5e-14
 Identities = 34/66 (51%), Positives = 52/66 (78%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            +MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+  M+RA+I+ D EA M+RF
Sbjct: 510  QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569

Query: 1133 IAGTKR 1150
            + G  R
Sbjct: 570  MGGLNR 575



 Score = 28.9 bits (63), Expect(2) = 5e-14
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N++I D +E+ HYVE+EEL
Sbjct: 574  NRDIIDRLEVQHYVELEEL 592


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score =  192 bits (488), Expect(3) = e-112
 Identities = 96/130 (73%), Positives = 106/130 (81%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 905  LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35
            L+TLLR II+KN+K WEDCLP  EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV 
Sbjct: 965  LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024

Query: 34   VCESRWKKKS 5
               S  +KK+
Sbjct: 1025 EMTSLDEKKN 1034



 Score =  133 bits (334), Expect(3) = e-112
 Identities = 64/102 (62%), Positives = 77/102 (75%)
 Frame = -3

Query: 948  DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFRENK 769
            DALS RY L+STL+AKL GFE +KELYA + DF+  Y  C+K   G ++R DG+LFREN+
Sbjct: 717  DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776

Query: 768  LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            LCVPN +MRE LVRE+H GGLMGHFGV KTL V  EH +  K
Sbjct: 777  LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818



 Score =  129 bits (325), Expect(3) = e-112
 Identities = 61/85 (71%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF
Sbjct: 819  MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA+H+A
Sbjct: 879  VVVDRFSKMTHFISCHKTDDATHIA 903



 Score = 47.8 bits (112), Expect(2) = 3e-06
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +2

Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMARFIAGTKR 1150
            NV+ Y+K+M+I MIRAN+E D+E TMARF+ G  R
Sbjct: 143  NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNR 177



 Score = 31.2 bits (69), Expect(2) = 3e-06
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N++IA+VVEL HYVE+E +
Sbjct: 176  NRDIANVVELQHYVELENM 194


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  193 bits (491), Expect(3) = e-108
 Identities = 91/119 (76%), Positives = 102/119 (85%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L+P++L PLP+
Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434



 Score =  133 bits (335), Expect(3) = e-108
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDASH+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314



 Score =  114 bits (284), Expect(3) = e-108
 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
            I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y  C        Y  HDGFLF
Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 34/66 (51%), Positives = 48/66 (72%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            EMK  M  RF+  HY +DL+ KLQ L QGS++V+ YYK+M+  MIRAN+  D+E ++ARF
Sbjct: 213  EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272

Query: 1133 IAGTKR 1150
            ++G  R
Sbjct: 273  MSGLHR 278


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score =  193 bits (491), Expect(3) = e-108
 Identities = 91/119 (76%), Positives = 102/119 (85%)
 Frame = -2

Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
           LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343

Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
           L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L+P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402



 Score =  133 bits (335), Expect(3) = e-108
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -1

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282



 Score =  114 bits (284), Expect(3) = e-108
 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
           I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y  C        Y  HDGFLF
Sbjct: 92  IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
           gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
           Japonica Group]
          Length = 681

 Score =  193 bits (490), Expect(3) = e-107
 Identities = 91/119 (76%), Positives = 101/119 (84%)
 Frame = -2

Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
           LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343

Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
           L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T   PFE+VY F  L P++L PLP+
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402



 Score =  133 bits (335), Expect(3) = e-107
 Identities = 59/85 (69%), Positives = 72/85 (84%)
 Frame = -1

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R+  RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDASH+A
Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282



 Score =  112 bits (280), Expect(3) = e-107
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781
           I +DALS + VLL+ L+ K+ G E IKELY  +LDFSE Y  C        Y  HDGFLF
Sbjct: 92  IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLCVP+C++R  L++E+H GGLMGHFG  KT  +  +HFY  K
Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  171 bits (434), Expect(3) = e-102
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383



 Score =  127 bits (319), Expect(3) = e-102
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176



 Score =  124 bits (311), Expect(3) = e-102
 Identities = 54/86 (62%), Positives = 70/86 (81%)
 Frame = -1

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238

Query: 476  FVVVDRFS*MVHFILSHKTDDASHVA 399
            FVVVDRFS M  FI   KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264



 Score = 67.4 bits (163), Expect(2) = 1e-10
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ARF
Sbjct: 190  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249

Query: 1133 IAG 1141
            + G
Sbjct: 250  LNG 252



 Score = 26.6 bits (57), Expect(2) = 1e-10
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N EIA+VVE+  YV ++EL
Sbjct: 254  NTEIANVVEIQQYVTLDEL 272


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  171 bits (434), Expect(3) = e-102
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383



 Score =  127 bits (319), Expect(3) = e-102
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176



 Score =  123 bits (308), Expect(3) = e-102
 Identities = 54/86 (62%), Positives = 70/86 (81%)
 Frame = -1

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I
Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238

Query: 476  FVVVDRFS*MVHFILSHKTDDASHVA 399
            FVVVDRFS M  FI   KT+DASHVA
Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264



 Score = 67.4 bits (163), Expect(2) = 1e-10
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ARF
Sbjct: 190  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249

Query: 1133 IAG 1141
            + G
Sbjct: 250  LNG 252



 Score = 26.6 bits (57), Expect(2) = 1e-10
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N EIA+VVE+  YV ++EL
Sbjct: 254  NTEIANVVEIQQYVTLDEL 272


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
            zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
            E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
            putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score =  209 bits (532), Expect(3) = e-102
 Identities = 98/119 (82%), Positives = 109/119 (91%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 879  LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38
            L+TLLR +IKKN+KTWEDCLPHVEFAYN  VHSATKFSPF+IVY FN +TPL+L PLP+
Sbjct: 939  LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997



 Score =  129 bits (323), Expect(3) = e-102
 Identities = 59/85 (69%), Positives = 68/85 (80%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            MKR ++R+C RC TC+QAK++  PHGL TPLPIP  PW DISMDFV+GLPR R G+D IF
Sbjct: 793  MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA H+A
Sbjct: 853  VVVDRFSKMAHFIPCHKTDDAMHIA 877



 Score = 84.0 bits (206), Expect(3) = e-102
 Identities = 33/50 (66%), Positives = 44/50 (88%)
 Frame = -3

Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
           RH+GFLF +N+LC+PN ++RE  +RE+HGGGLMGHFGV+KTL V Q+HF+
Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789



 Score = 70.1 bits (170), Expect(2) = 3e-10
 Identities = 29/67 (43%), Positives = 53/67 (79%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
            +++K++M +RF+ SHY+++L+ +L+ LVQG+  VE Y+K+M+  M+RA+++ + EATM+R
Sbjct: 130  NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189

Query: 1130 FIAGTKR 1150
            F+ G  R
Sbjct: 190  FMGGLNR 196



 Score = 22.7 bits (47), Expect(2) = 3e-10
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N++I D  E+ HY  +EEL
Sbjct: 195  NRDILDRFEVIHYENLEEL 213


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  185 bits (470), Expect(3) = e-101
 Identities = 86/118 (72%), Positives = 100/118 (84%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK  PF+IVY      P++L PLP
Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430



 Score =  131 bits (330), Expect(3) = e-101
 Identities = 59/85 (69%), Positives = 69/85 (81%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R   RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDASH+A
Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311



 Score =  103 bits (256), Expect(3) = e-101
 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
            I +DALS RY LL+ LD K+FG E IK+ YA + DF++    CK   T   +  +DGF+F
Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+
Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223



 Score =  105 bits (262), Expect(2) = 4e-33
 Identities = 51/112 (45%), Positives = 73/112 (65%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            L+F  IV LHG+P+ IVSDR+++F S+F K L  +LGT+L FST  HPQ DGQTE +N+ 
Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59
            L  +L   +    KTW+  LP+ EF+YN    ++ + +P+E +Y     TPL
Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246



 Score = 64.3 bits (155), Expect(2) = 4e-33
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = -1

Query: 656  SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480
            SMKR+I      C  C++ K++   P GL  PL +P   W +I MDF+ GLP+ + G D 
Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106

Query: 479  IFVVVDRFS*MVHFI 435
            I+VVVDR + +  FI
Sbjct: 2107 IWVVVDRLTKVARFI 2121



 Score = 62.4 bits (150), Expect(2) = 2e-07
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
            D +K VM  RF+ S+Y +DL  +LQ L QG+ +VE YY+++++ ++R N+E  ++A MAR
Sbjct: 222  DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281

Query: 1130 FIAGTKR 1150
            F+ G  R
Sbjct: 282  FLGGLNR 288



 Score = 20.8 bits (42), Expect(2) = 2e-07
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N+EI D+V+   Y  M  L
Sbjct: 287  NREIYDIVDYKDYTNMTRL 305


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  188 bits (478), Expect(3) = e-101
 Identities = 88/118 (74%), Positives = 101/118 (85%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK  PF+IVY      P++L PLP
Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433



 Score =  130 bits (327), Expect(3) = e-101
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R+  RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F
Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HKTDDA+H+A
Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314



 Score =  101 bits (251), Expect(3) = e-101
 Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTN-GTYFRHDGFLF 781
            I +DALS RY LL+ LD K+FG E IK+ Y  + DF +    CK       Y   DGF+F
Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+  K
Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229



 Score = 64.7 bits (156), Expect = 8e-08
 Identities = 31/67 (46%), Positives = 47/67 (70%)
 Frame = +2

Query: 950  DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129
            D +K VM  RF+ S+Y +D+  KLQ L QG+ +VE YY+++++ M+R NIE  +E+ MAR
Sbjct: 216  DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275

Query: 1130 FIAGTKR 1150
            F+ G  R
Sbjct: 276  FLGGLNR 282


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  184 bits (467), Expect(3) = e-100
 Identities = 88/118 (74%), Positives = 99/118 (83%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458



 Score =  126 bits (316), Expect(3) = e-100
 Identities = 57/85 (67%), Positives = 69/85 (81%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339



 Score =  103 bits (258), Expect(3) = e-100
 Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF +    CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  180 bits (456), Expect(3) = e-100
 Identities = 84/118 (71%), Positives = 98/118 (83%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT
Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK  PF+IVY      P++L PLP
Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409



 Score =  133 bits (334), Expect(3) = e-100
 Identities = 60/85 (70%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + R   RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF
Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS MVHFI  HKTDDASH+A
Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290



 Score =  101 bits (251), Expect(3) = e-100
 Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
            I ++ALS RY LL+ LD K+FG E IK+ YA + DF++    CK   T   +  +DGF+F
Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            R NKLC+P  ++R  L++E+HGGGLMGHFG  KT  +   HF+
Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  182 bits (462), Expect(3) = 2e-99
 Identities = 87/118 (73%), Positives = 98/118 (83%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 654  LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYN   HS TK  PFEIVY      P++L PLP
Sbjct: 714  LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771



 Score =  128 bits (322), Expect(3) = 2e-99
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -1

Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
           M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627

Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399
           VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652



 Score =  101 bits (252), Expect(3) = 2e-99
 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
           + +DALS RY +LS LD K+FG E IKE YA + DF +    C +  T   +   +GF+F
Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521

Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
           R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  180 bits (456), Expect(3) = 4e-99
 Identities = 86/118 (72%), Positives = 97/118 (82%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L P P
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458



 Score =  128 bits (322), Expect(3) = 4e-99
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339



 Score =  103 bits (256), Expect(3) = 4e-99
 Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF      CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++R  L++E+HGGGLMGHFGV KT  +  +HF+  K
Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  196 bits (498), Expect(3) = 7e-99
 Identities = 93/118 (78%), Positives = 104/118 (88%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 910  LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T  SPFEIVY FN LTPL+L P+P
Sbjct: 970  LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027



 Score =  128 bits (321), Expect(3) = 7e-99
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R + + CG CI C+QAKS+V PHGLYTPLP+P  PW DISMDFVLGLP+ ++G+D +F
Sbjct: 824  MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI   K DDA HVA
Sbjct: 884  VVVDRFSKMAHFIPCKKVDDACHVA 908



 Score = 86.7 bits (213), Expect(3) = 7e-99
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -3

Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
           RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+
Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820



 Score = 70.9 bits (172), Expect = 1e-09
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            EMK VM KR++ + Y + +  KLQGL QG++ VE YYK+M++ ++RANIE D E TMARF
Sbjct: 153  EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212

Query: 1133 IAG 1141
            + G
Sbjct: 213  LNG 215


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  183 bits (464), Expect(3) = 9e-99
 Identities = 87/118 (73%), Positives = 99/118 (83%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            ++T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354



 Score =  128 bits (322), Expect(3) = 9e-99
 Identities = 58/85 (68%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA+HVA
Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235



 Score = 99.0 bits (245), Expect(3) = 9e-99
 Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
 Frame = -3

Query: 948  DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLFREN 772
            DALS RY +LS LD K+FG E IKE YA + DF +    CK+  T   +   +GF+FR N
Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107

Query: 771  KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            KLC+P  ++   L++E+HGGGLMGHFGV KT  +  +H +  K
Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  184 bits (467), Expect(3) = 9e-99
 Identities = 88/118 (74%), Positives = 99/118 (83%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT
Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++KKNIK WE+CLPHVEFAYNR  HS TK  PFEIVY      P++L PLP
Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458



 Score =  126 bits (317), Expect(3) = 9e-99
 Identities = 57/84 (67%), Positives = 69/84 (82%)
 Frame = -1

Query: 650  KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471
            +R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 470  VVDRFS*MVHFILSHKTDDASHVA 399
            VVDRFS M HFI  HK+DDA+HVA
Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339



 Score = 99.8 bits (247), Expect(3) = 9e-99
 Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781
            + +DALS RY +LS LD K+FG E IKE YA + DF +    CK+  T   +   +GF+F
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208

Query: 780  RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643
            R NKLC+P  ++   L++E+HGGGLMGHFGV K   +  +HF+  K
Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254



 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = +2

Query: 914  VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093
            V SN        D MK VM  RF+ S++ +DL  KLQ L QG+ +VE YY+ ++I M+R 
Sbjct: 212  VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271

Query: 1094 NIEGDKEATMARFIAGTKR 1150
             +  + +A MARF+ G  R
Sbjct: 272  GLVENDDAGMARFMGGLNR 290


>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
          Length = 1191

 Score =  171 bits (434), Expect(3) = 2e-98
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT
Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L  +LR I+K  + +WED LP VEFAYNR  HS+T  +PFE+VY FN LTPL+L PLP
Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165



 Score =  127 bits (319), Expect(3) = 2e-98
 Identities = 61/102 (59%), Positives = 74/102 (72%)
 Frame = -3

Query: 957  ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778
            + +DALS RYVL+STL +KL GF+QIK LYA + DF E +  CK      +   D FLF+
Sbjct: 832  VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891

Query: 777  ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            ENKLCVPNC++RE  VRE+H GGLMGHFGV KTL +  EHFY
Sbjct: 892  ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933



 Score =  110 bits (275), Expect(3) = 2e-98
 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%)
 Frame = -1

Query: 656  SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528
            SM++ ++++C  C+ C+QAKS+  PHGLYTPLP+ + PWIDIS                 
Sbjct: 936  SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995

Query: 527  --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399
                    MDF+LGLPR ++G+D IFVVVDRFS M  FI   KT+DASHVA
Sbjct: 996  NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046



 Score = 67.4 bits (163), Expect(2) = 1e-10
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = +2

Query: 953  EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132
            EMK VM KRFI S++ +DL  +LQ L QGSM+V+ Y+K M + MI+AN   ++EAT+ARF
Sbjct: 216  EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275

Query: 1133 IAG 1141
            + G
Sbjct: 276  LNG 278



 Score = 26.6 bits (57), Expect(2) = 1e-10
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 1141 NKEIADVVELHHYVEMEEL 1197
            N EIA+VVE+  YV ++EL
Sbjct: 280  NTEIANVVEIQQYVTLDEL 298


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  183 bits (464), Expect(3) = 3e-98
 Identities = 84/118 (71%), Positives = 100/118 (84%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK  PFEIVY F    P++L P+P
Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489



 Score =  125 bits (315), Expect(3) = 3e-98
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA++VA
Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370



 Score = 99.8 bits (247), Expect(3) = 3e-98
 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = -3

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787
            D + +DALS RY +LS LD K+FG E IK+ Y  + DF +    C++  T   +  ++GF
Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237

Query: 786  LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            +FR NKLC+P  ++R  L++E+HGGGLMGHFGV K   V   HF+
Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  182 bits (461), Expect(3) = 7e-98
 Identities = 83/118 (70%), Positives = 100/118 (84%)
 Frame = -2

Query: 394  LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215
            LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+
Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428

Query: 214  LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41
            L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK  PFEIVY F    P++L P+P
Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486



 Score =  125 bits (315), Expect(3) = 7e-98
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = -1

Query: 653  MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474
            M+R ++R   RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF
Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342

Query: 473  VVVDRFS*MVHFILSHKTDDASHVA 399
            VVVDRFS M HFI  HK+DDA++VA
Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367



 Score = 99.8 bits (247), Expect(3) = 7e-98
 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = -3

Query: 963  DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787
            D + +DALS RY +LS LD K+FG E IK+ Y  + DF +    C++  T   +  ++GF
Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234

Query: 786  LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652
            +FR NKLC+P  ++R  L++E+HGGGLMGHFGV K   V   HF+
Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279