BLASTX nr result
ID: Akebia27_contig00024535
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia27_contig00024535 (1199 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 205 e-121 emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 192 e-112 gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 193 e-108 gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 193 e-108 ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 193 e-107 gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 171 e-102 gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 171 e-102 gb|AAD17351.1| contains similarity to retrovirus-related polypro... 209 e-102 gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 185 e-101 gb|AAM94350.1| gag-pol polyprotein [Zea mays] 188 e-101 gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 184 e-100 gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 180 e-100 gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 182 2e-99 gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 180 4e-99 ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 196 7e-99 gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 183 9e-99 dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 184 9e-99 ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 171 2e-98 gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 183 3e-98 gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 182 7e-98 >gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] Length = 1887 Score = 205 bits (522), Expect(4) = e-121 Identities = 96/119 (80%), Positives = 108/119 (90%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1504 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 1563 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+TLLR +IKKN+KTWEDCLPHVEFAYN +HSA+KFSPF+IVY FN TPL+L PLP+ Sbjct: 1564 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPL 1622 Score = 143 bits (361), Expect(4) = e-121 Identities = 64/104 (61%), Positives = 83/104 (79%) Frame = -3 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFL 784 D + +DALS RYVLLS+LDAKL GFE IK LYA + DF + Y+ C+K G Y+RHDGFL Sbjct: 1311 DNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFL 1370 Query: 783 FRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 F +N+LC+PN ++RE +RE+HGGGLMGHFGV+KT+ V Q+HF+ Sbjct: 1371 FYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFH 1414 Score = 134 bits (338), Expect(4) = e-121 Identities = 62/85 (72%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++RIC RC TC+QAK++ PHGLYTPLPIPS PW DISMDFV+GLPR R G+D IF Sbjct: 1418 MKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIF 1477 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA H+A Sbjct: 1478 VVVDRFSKMAHFIPCHKTDDAIHIA 1502 Score = 24.6 bits (52), Expect(4) = e-121 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -3 Query: 42 LSECVNLDGKRKAE 1 LSE V+LDGK+KAE Sbjct: 1622 LSERVSLDGKKKAE 1635 Score = 76.6 bits (187), Expect(2) = 5e-14 Identities = 34/66 (51%), Positives = 52/66 (78%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 +MK++M KRF+ SHYY++L+ +L+ LVQG+ +VE YYK+M+ M+RA+I+ D EA M+RF Sbjct: 510 QMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRF 569 Query: 1133 IAGTKR 1150 + G R Sbjct: 570 MGGLNR 575 Score = 28.9 bits (63), Expect(2) = 5e-14 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N++I D +E+ HYVE+EEL Sbjct: 574 NRDIIDRLEVQHYVELEEL 592 >emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] Length = 1173 Score = 192 bits (488), Expect(3) = e-112 Identities = 96/130 (73%), Positives = 106/130 (81%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF++IVRLHG+PR+IVSDRD KFLS F K LW KLGTKLLFSTT HPQ DGQ EVVNRT Sbjct: 905 LFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRT 964 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV* 35 L+TLLR II+KN+K WEDCLP EFAYNR VHS T FSPFEIVY FN LTPL+L PLPV Sbjct: 965 LSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVN 1024 Query: 34 VCESRWKKKS 5 S +KK+ Sbjct: 1025 EMTSLDEKKN 1034 Score = 133 bits (334), Expect(3) = e-112 Identities = 64/102 (62%), Positives = 77/102 (75%) Frame = -3 Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFRENK 769 DALS RY L+STL+AKL GFE +KELYA + DF+ Y C+K G ++R DG+LFREN+ Sbjct: 717 DALSRRYALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENR 776 Query: 768 LCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 LCVPN +MRE LVRE+H GGLMGHFGV KTL V EH + K Sbjct: 777 LCVPNSSMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPK 818 Score = 129 bits (325), Expect(3) = e-112 Identities = 61/85 (71%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++R C RCIT R AKS+V PHGLYT L +PS PW+DISMDFVLGL R+R+GRD IF Sbjct: 819 MKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIF 878 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA+H+A Sbjct: 879 VVVDRFSKMTHFISCHKTDDATHIA 903 Score = 47.8 bits (112), Expect(2) = 3e-06 Identities = 21/35 (60%), Positives = 28/35 (80%) Frame = +2 Query: 1046 NVEYYYKKMKITMIRANIEGDKEATMARFIAGTKR 1150 NV+ Y+K+M+I MIRAN+E D+E TMARF+ G R Sbjct: 143 NVDDYHKEMEIAMIRANVEEDRETTMARFLNGLNR 177 Score = 31.2 bits (69), Expect(2) = 3e-06 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N++IA+VVEL HYVE+E + Sbjct: 176 NRDIANVVELQHYVELENM 194 >gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1713 Score = 193 bits (491), Expect(3) = e-108 Identities = 91/119 (76%), Positives = 102/119 (85%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+ Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 1434 Score = 133 bits (335), Expect(3) = e-108 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1230 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 1289 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 1290 VVVDRFSKMAHFIPCHKSDDASHIA 1314 Score = 114 bits (284), Expect(3) = e-108 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y C Y HDGFLF Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 1183 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 1184 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 1229 Score = 70.5 bits (171), Expect = 1e-09 Identities = 34/66 (51%), Positives = 48/66 (72%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 EMK M RF+ HY +DL+ KLQ L QGS++V+ YYK+M+ MIRAN+ D+E ++ARF Sbjct: 213 EMKREMRARFVPKHYRRDLFDKLQNLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARF 272 Query: 1133 IAGTKR 1150 ++G R Sbjct: 273 MSGLHR 278 >gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza sativa Japonica Group] Length = 681 Score = 193 bits (491), Expect(3) = e-108 Identities = 91/119 (76%), Positives = 102/119 (85%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L+P++L PLP+ Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPL 402 Score = 133 bits (335), Expect(3) = e-108 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282 Score = 114 bits (284), Expect(3) = e-108 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY+ +LDFSE Y C Y HDGFLF Sbjct: 92 IVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197 >ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa Japonica Group] Length = 681 Score = 193 bits (490), Expect(3) = e-107 Identities = 91/119 (76%), Positives = 101/119 (84%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF EIVRLHGMP+TIVSDRD KFLSYF KTLWAKLGT+LLFSTT HPQ DGQTEVVNRT Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+ LLR +IKKN+K WE+CLPHVEFAYNR VHS T PFE+VY F L P++L PLP+ Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPL 402 Score = 133 bits (335), Expect(3) = e-107 Identities = 59/85 (69%), Positives = 72/85 (84%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R+ RC+TC +AKS+++PHGLYTPLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 198 MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIF 257 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDASH+A Sbjct: 258 VVVDRFSKMAHFIPCHKSDDASHIA 282 Score = 112 bits (280), Expect(3) = e-107 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGT-YFRHDGFLF 781 I +DALS + VLL+ L+ K+ G E IKELY +LDFSE Y C Y HDGFLF Sbjct: 92 IVADALSRKNVLLNQLEVKVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLF 151 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLCVP+C++R L++E+H GGLMGHFG KT + +HFY K Sbjct: 152 RANKLCVPHCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPK 197 >gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum] Length = 1588 Score = 171 bits (434), Expect(3) = e-102 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383 Score = 127 bits (319), Expect(3) = e-102 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176 Score = 124 bits (311), Expect(3) = e-102 Identities = 54/86 (62%), Positives = 70/86 (81%) Frame = -1 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSI 1238 Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399 FVVVDRFS M FI KT+DASHVA Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264 Score = 67.4 bits (163), Expect(2) = 1e-10 Identities = 34/63 (53%), Positives = 47/63 (74%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249 Query: 1133 IAG 1141 + G Sbjct: 250 LNG 252 Score = 26.6 bits (57), Expect(2) = 1e-10 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N EIA+VVE+ YV ++EL Sbjct: 254 NTEIANVVEIQQYVTLDEL 272 >gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum] Length = 1588 Score = 171 bits (434), Expect(3) = e-102 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1266 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1325 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1326 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383 Score = 127 bits (319), Expect(3) = e-102 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 1075 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 1135 ENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFY 1176 Score = 123 bits (308), Expect(3) = e-102 Identities = 54/86 (62%), Positives = 70/86 (81%) Frame = -1 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLI 477 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDISMDF+LGLPR ++G+D I Sbjct: 1179 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSI 1238 Query: 476 FVVVDRFS*MVHFILSHKTDDASHVA 399 FVVVDRFS M FI KT+DASHVA Sbjct: 1239 FVVVDRFSKMARFIPCKKTNDASHVA 1264 Score = 67.4 bits (163), Expect(2) = 1e-10 Identities = 34/63 (53%), Positives = 47/63 (74%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF Sbjct: 190 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 249 Query: 1133 IAG 1141 + G Sbjct: 250 LNG 252 Score = 26.6 bits (57), Expect(2) = 1e-10 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N EIA+VVE+ YV ++EL Sbjct: 254 NTEIANVVEIQQYVTLDEL 272 >gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1| putative polyprotein [Arabidopsis thaliana] Length = 1138 Score = 209 bits (532), Expect(3) = e-102 Identities = 98/119 (82%), Positives = 109/119 (91%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+E+VRLHGMP+TIVSDRD KFLSYF KTLW+KLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 879 LFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRT 938 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLPV 38 L+TLLR +IKKN+KTWEDCLPHVEFAYN VHSATKFSPF+IVY FN +TPL+L PLP+ Sbjct: 939 LSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMPLPL 997 Score = 129 bits (323), Expect(3) = e-102 Identities = 59/85 (69%), Positives = 68/85 (80%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 MKR ++R+C RC TC+QAK++ PHGL TPLPIP PW DISMDFV+GLPR R G+D IF Sbjct: 793 MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIF 852 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA H+A Sbjct: 853 VVVDRFSKMAHFIPCHKTDDAMHIA 877 Score = 84.0 bits (206), Expect(3) = e-102 Identities = 33/50 (66%), Positives = 44/50 (88%) Frame = -3 Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 RH+GFLF +N+LC+PN ++RE +RE+HGGGLMGHFGV+KTL V Q+HF+ Sbjct: 740 RHEGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFH 789 Score = 70.1 bits (170), Expect(2) = 3e-10 Identities = 29/67 (43%), Positives = 53/67 (79%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129 +++K++M +RF+ SHY+++L+ +L+ LVQG+ VE Y+K+M+ M+RA+++ + EATM+R Sbjct: 130 NQLKNIMKRRFVPSHYHRELHQRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSR 189 Query: 1130 FIAGTKR 1150 F+ G R Sbjct: 190 FMGGLNR 196 Score = 22.7 bits (47), Expect(2) = 3e-10 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N++I D E+ HY +EEL Sbjct: 195 NRDILDRFEVIHYENLEEL 213 >gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group] gi|31431012|gb|AAP52850.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 2447 Score = 185 bits (470), Expect(3) = e-101 Identities = 86/118 (72%), Positives = 100/118 (84%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1313 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1372 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPH+EFAYNR +HS TK PF+IVY P++L PLP Sbjct: 1373 LSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1430 Score = 131 bits (330), Expect(3) = e-101 Identities = 59/85 (69%), Positives = 69/85 (81%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1286 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDASH+A Sbjct: 1287 VVVDRFSKMAHFIPCHKTDDASHIA 1311 Score = 103 bits (256), Expect(3) = e-101 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 I +DALS RY LL+ LD K+FG E IK+ YA + DF++ CK T + +DGF+F Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1180 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ Sbjct: 1181 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223 Score = 105 bits (262), Expect(2) = 4e-33 Identities = 51/112 (45%), Positives = 73/112 (65%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 L+F IV LHG+P+ IVSDR+++F S+F K L +LGT+L FST HPQ DGQTE +N+ Sbjct: 2135 LYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQI 2194 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPL 59 L +L + KTW+ LP+ EF+YN ++ + +P+E +Y TPL Sbjct: 2195 LEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL 2246 Score = 64.3 bits (155), Expect(2) = 4e-33 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = -1 Query: 656 SMKRKIKRICGRCITCRQAKSQ-VHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDL 480 SMKR+I C C++ K++ P GL PL +P W +I MDF+ GLP+ + G D Sbjct: 2047 SMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDS 2106 Query: 479 IFVVVDRFS*MVHFI 435 I+VVVDR + + FI Sbjct: 2107 IWVVVDRLTKVARFI 2121 Score = 62.4 bits (150), Expect(2) = 2e-07 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129 D +K VM RF+ S+Y +DL +LQ L QG+ +VE YY+++++ ++R N+E ++A MAR Sbjct: 222 DALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMAR 281 Query: 1130 FIAGTKR 1150 F+ G R Sbjct: 282 FLGGLNR 288 Score = 20.8 bits (42), Expect(2) = 2e-07 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N+EI D+V+ Y M L Sbjct: 287 NREIYDIVDYKDYTNMTRL 305 >gb|AAM94350.1| gag-pol polyprotein [Zea mays] Length = 1618 Score = 188 bits (478), Expect(3) = e-101 Identities = 88/118 (74%), Positives = 101/118 (85%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRDAKFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1316 LFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1375 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WEDCLPH+EFAYNR +HS TK PF+IVY P++L PLP Sbjct: 1376 LSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLP 1433 Score = 130 bits (327), Expect(3) = e-101 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R+ RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR R GRD +F Sbjct: 1230 MRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVF 1289 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HKTDDA+H+A Sbjct: 1290 VVVDRFSKMAHFIPCHKTDDATHIA 1314 Score = 101 bits (251), Expect(3) = e-101 Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTN-GTYFRHDGFLF 781 I +DALS RY LL+ LD K+FG E IK+ Y + DF + CK Y DGF+F Sbjct: 1124 IIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVF 1183 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ K Sbjct: 1184 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPK 1229 Score = 64.7 bits (156), Expect = 8e-08 Identities = 31/67 (46%), Positives = 47/67 (70%) Frame = +2 Query: 950 DEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMAR 1129 D +K VM RF+ S+Y +D+ KLQ L QG+ +VE YY+++++ M+R NIE +E+ MAR Sbjct: 216 DALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMAR 275 Query: 1130 FIAGTKR 1150 F+ G R Sbjct: 276 FLGGLNR 282 >gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group] gi|15217296|gb|AAK92640.1|AC079634_1 Putative retroelement [Oryza sativa Japonica Group] gi|31431373|gb|AAP53161.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 1708 Score = 184 bits (467), Expect(3) = e-100 Identities = 88/118 (74%), Positives = 99/118 (83%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458 Score = 126 bits (316), Expect(3) = e-100 Identities = 57/85 (67%), Positives = 69/85 (81%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AK +++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 103 bits (258), Expect(3) = e-100 Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254 >gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] Length = 1619 Score = 180 bits (456), Expect(3) = e-100 Identities = 84/118 (71%), Positives = 98/118 (83%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQ EVVNRT Sbjct: 1292 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRT 1351 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPH+EFA NR +HS TK PF+IVY P++L PLP Sbjct: 1352 LSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLP 1409 Score = 133 bits (334), Expect(3) = e-100 Identities = 60/85 (70%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + R RC TC++AKS++HPHGLY PLP+P+ PW DISMDFVLGLPR + GRD IF Sbjct: 1206 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIF 1265 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS MVHFI HKTDDASH+A Sbjct: 1266 VVVDRFSKMVHFIPCHKTDDASHIA 1290 Score = 101 bits (251), Expect(3) = e-100 Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 I ++ALS RY LL+ LD K+FG E IK+ YA + DF++ CK T + +DGF+F Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVF 1159 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 R NKLC+P ++R L++E+HGGGLMGHFG KT + HF+ Sbjct: 1160 RANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202 >gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 889 Score = 182 bits (462), Expect(3) = 2e-99 Identities = 87/118 (73%), Positives = 98/118 (83%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 654 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 713 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYN HS TK PFEIVY P++L PLP Sbjct: 714 LSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 771 Score = 128 bits (322), Expect(3) = 2e-99 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 568 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 627 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 628 VVVDRFSKMAHFIPCHKSDDATHVA 652 Score = 101 bits (252), Expect(3) = 2e-99 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF + C + T + +GF+F Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVF 521 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 522 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 567 >gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1616 Score = 180 bits (456), Expect(3) = 4e-99 Identities = 86/118 (72%), Positives = 97/118 (82%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTK LFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L P P Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHP 1458 Score = 128 bits (322), Expect(3) = 4e-99 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1314 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1315 VVVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 103 bits (256), Expect(3) = 4e-99 Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++R L++E+HGGGLMGHFGV KT + +HF+ K Sbjct: 1209 RANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254 >ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max] Length = 1176 Score = 196 bits (498), Expect(3) = 7e-99 Identities = 93/118 (78%), Positives = 104/118 (88%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFFKEIVRLHG+PR+IVSDRDAKFLS+F +TLW K+GTKLLFSTT HPQ DGQTEVVNRT Sbjct: 910 LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 969 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L TLLR ++KKN+K+WE CLPHVEFAYNR VHS T SPFEIVY FN LTPL+L P+P Sbjct: 970 LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLLPMP 1027 Score = 128 bits (321), Expect(3) = 7e-99 Identities = 56/85 (65%), Positives = 67/85 (78%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R + + CG CI C+QAKS+V PHGLYTPLP+P PW DISMDFVLGLP+ ++G+D +F Sbjct: 824 MRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVF 883 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI K DDA HVA Sbjct: 884 VVVDRFSKMAHFIPCKKVDDACHVA 908 Score = 86.7 bits (213), Expect(3) = 7e-99 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = -3 Query: 801 RHDGFLFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 RHDGFLF+ NKLCVP C++RE LV ESH GGLMGHFGV KTL + QEHF+ Sbjct: 771 RHDGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFF 820 Score = 70.9 bits (172), Expect = 1e-09 Identities = 34/63 (53%), Positives = 47/63 (74%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 EMK VM KR++ + Y + + KLQGL QG++ VE YYK+M++ ++RANIE D E TMARF Sbjct: 153 EMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEEDSEDTMARF 212 Query: 1133 IAG 1141 + G Sbjct: 213 LNG 215 >gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group] Length = 1619 Score = 183 bits (464), Expect(3) = 9e-99 Identities = 87/118 (73%), Positives = 99/118 (83%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1237 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1296 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 ++T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1297 VSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1354 Score = 128 bits (322), Expect(3) = 9e-99 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1210 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA+HVA Sbjct: 1211 VVVDRFSKMAHFIPCHKSDDATHVA 1235 Score = 99.0 bits (245), Expect(3) = 9e-99 Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Frame = -3 Query: 948 DALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLFREN 772 DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+FR N Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107 Query: 771 KLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 KLC+P ++ L++E+HGGGLMGHFGV KT + +H + K Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150 >dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] Length = 1587 Score = 184 bits (467), Expect(3) = 9e-99 Identities = 88/118 (74%), Positives = 99/118 (83%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EIVRLHG+P TIVSDRD KFLS+F +TLWAKLGTKLLFSTT HPQ DGQTEVVNRT Sbjct: 1341 LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRT 1400 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++KKNIK WE+CLPHVEFAYNR HS TK PFEIVY P++L PLP Sbjct: 1401 LSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLP 1458 Score = 126 bits (317), Expect(3) = 9e-99 Identities = 57/84 (67%), Positives = 69/84 (82%) Frame = -1 Query: 650 KRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIFV 471 +R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IFV Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315 Query: 470 VVDRFS*MVHFILSHKTDDASHVA 399 VVDRFS M HFI HK+DDA+HVA Sbjct: 1316 VVDRFSKMAHFIPCHKSDDATHVA 1339 Score = 99.8 bits (247), Expect(3) = 9e-99 Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGFLF 781 + +DALS RY +LS LD K+FG E IKE YA + DF + CK+ T + +GF+F Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 780 RENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFYETK 643 R NKLC+P ++ L++E+HGGGLMGHFGV K + +HF+ K Sbjct: 1209 RANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254 Score = 59.3 bits (142), Expect = 3e-06 Identities = 33/79 (41%), Positives = 47/79 (59%) Frame = +2 Query: 914 VESNTYLQESASDEMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRA 1093 V SN D MK VM RF+ S++ +DL KLQ L QG+ +VE YY+ ++I M+R Sbjct: 212 VRSNPNNTPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRC 271 Query: 1094 NIEGDKEATMARFIAGTKR 1150 + + +A MARF+ G R Sbjct: 272 GLVENDDAGMARFMGGLNR 290 >ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum] Length = 1191 Score = 171 bits (434), Expect(3) = 2e-98 Identities = 83/118 (70%), Positives = 97/118 (82%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LF KE+V+LHG+PRTIVSDRDAKFLS+F + LW KLGTKLLFST+ HPQ DGQTEVVNRT Sbjct: 1048 LFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRT 1107 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L +LR I+K + +WED LP VEFAYNR HS+T +PFE+VY FN LTPL+L PLP Sbjct: 1108 LGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1165 Score = 127 bits (319), Expect(3) = 2e-98 Identities = 61/102 (59%), Positives = 74/102 (72%) Frame = -3 Query: 957 ISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKSTNGTYFRHDGFLFR 778 + +DALS RYVL+STL +KL GF+QIK LYA + DF E + CK + D FLF+ Sbjct: 832 VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 891 Query: 777 ENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 ENKLCVPNC++RE VRE+H GGLMGHFGV KTL + EHFY Sbjct: 892 ENKLCVPNCSLRELFVREAHYGGLMGHFGVPKTLEILSEHFY 933 Score = 110 bits (275), Expect(3) = 2e-98 Identities = 54/111 (48%), Positives = 70/111 (63%), Gaps = 25/111 (22%) Frame = -1 Query: 656 SMKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDIS----------------- 528 SM++ ++++C C+ C+QAKS+ PHGLYTPLP+ + PWIDIS Sbjct: 936 SMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRIYTPLPVF 995 Query: 527 --------MDFVLGLPRNRHGRDLIFVVVDRFS*MVHFILSHKTDDASHVA 399 MDF+LGLPR ++G+D IFVVVDRFS M FI KT+DASHVA Sbjct: 996 NTPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVA 1046 Score = 67.4 bits (163), Expect(2) = 1e-10 Identities = 34/63 (53%), Positives = 47/63 (74%) Frame = +2 Query: 953 EMKSVMCKRFILSHYYQDLYIKLQGLVQGSMNVEYYYKKMKITMIRANIEGDKEATMARF 1132 EMK VM KRFI S++ +DL +LQ L QGSM+V+ Y+K M + MI+AN ++EAT+ARF Sbjct: 216 EMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCMEEEEATIARF 275 Query: 1133 IAG 1141 + G Sbjct: 276 LNG 278 Score = 26.6 bits (57), Expect(2) = 1e-10 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 1141 NKEIADVVELHHYVEMEEL 1197 N EIA+VVE+ YV ++EL Sbjct: 280 NTEIANVVEIQQYVTLDEL 298 >gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] Length = 1720 Score = 183 bits (464), Expect(3) = 3e-98 Identities = 84/118 (71%), Positives = 100/118 (84%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+ Sbjct: 1372 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1431 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++K NIK WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P Sbjct: 1432 LSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1489 Score = 125 bits (315), Expect(3) = 3e-98 Identities = 57/85 (67%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1345 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA++VA Sbjct: 1346 VVVDRFSKMAHFIPCHKSDDAANVA 1370 Score = 99.8 bits (247), Expect(3) = 3e-98 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%) Frame = -3 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787 D + +DALS RY +LS LD K+FG E IK+ Y + DF + C++ T + ++GF Sbjct: 1178 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1237 Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 +FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+ Sbjct: 1238 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1282 >gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] Length = 1717 Score = 182 bits (461), Expect(3) = 7e-98 Identities = 83/118 (70%), Positives = 100/118 (84%) Frame = -2 Query: 394 LFFKEIVRLHGMPRTIVSDRDAKFLSYF*KTLWAKLGTKLLFSTTGHPQIDGQTEVVNRT 215 LFF+EI+RLHG+P TIVSDRDAKFLS+F + LWAKLGTKLLFSTT HPQ DGQTEVVNR+ Sbjct: 1369 LFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRS 1428 Query: 214 LTTLLRVIIKKNIKTWEDCLPHVEFAYNRFVHSATKFSPFEIVYDFNLLTPLELSPLP 41 L+T+LR ++K N+K WE+CLPH+EFAYNR +HS TK PFEIVY F P++L P+P Sbjct: 1429 LSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIP 1486 Score = 125 bits (315), Expect(3) = 7e-98 Identities = 57/85 (67%), Positives = 70/85 (82%) Frame = -1 Query: 653 MKRKIKRICGRCITCRQAKSQVHPHGLYTPLPIPSEPWIDISMDFVLGLPRNRHGRDLIF 474 M+R ++R RC TC++AKS+++PHGLY PLP+PS PW DISMDFVLGLPR + GRD IF Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIF 1342 Query: 473 VVVDRFS*MVHFILSHKTDDASHVA 399 VVVDRFS M HFI HK+DDA++VA Sbjct: 1343 VVVDRFSKMAHFIPCHKSDDAANVA 1367 Score = 99.8 bits (247), Expect(3) = 7e-98 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%) Frame = -3 Query: 963 DFISSDALSCRYVLLSTLDAKLFGFEQIKELYATNLDFSEEYTLCKKS-TNGTYFRHDGF 787 D + +DALS RY +LS LD K+FG E IK+ Y + DF + C++ T + ++GF Sbjct: 1175 DNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGF 1234 Query: 786 LFRENKLCVPNCTMREFLVRESHGGGLMGHFGVAKTLAVFQEHFY 652 +FR NKLC+P ++R L++E+HGGGLMGHFGV K V HF+ Sbjct: 1235 VFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFF 1279