BLASTX nr result
ID: Akebia27_contig00024138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00024138
(561 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] 71 1e-32
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 68 7e-32
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 68 7e-32
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 68 3e-31
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 65 5e-30
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 72 8e-30
gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr... 69 2e-29
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera] 69 3e-28
emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera] 71 5e-28
emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera] 71 5e-28
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 68 7e-28
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 63 1e-27
gb|AAB82754.1| retrofit [Oryza longistaminata] 65 1e-27
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 72 1e-27
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773... 76 2e-27
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 64 3e-27
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 64 5e-27
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 64 5e-27
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 62 5e-27
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 63 5e-27
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
Length = 1390
Score = 70.9 bits (172), Expect(3) = 1e-32
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLY-EVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L EVY+ +P GF+ K HVCRLHK +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1051 FLQGTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNS 1110
Score = 62.0 bits (149), Expect(3) = 1e-32
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 546
+G +TN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1138 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1197
Query: 547 DCRP 558
P
Sbjct: 1198 AAHP 1201
Score = 53.1 bits (126), Expect(3) = 1e-32
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1015 FKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNA 1050
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 68.2 bits (165), Expect(3) = 7e-32
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLY-EVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 62.0 bits (149), Expect(3) = 7e-32
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 546
+G +TN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 547 DCRP 558
P
Sbjct: 1202 AAHP 1205
Score = 53.5 bits (127), Expect(3) = 7e-32
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 68.2 bits (165), Expect(3) = 7e-32
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLY-EVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 62.0 bits (149), Expect(3) = 7e-32
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 546
+G +TN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 547 DCRP 558
P
Sbjct: 1202 AAHP 1205
Score = 53.5 bits (127), Expect(3) = 7e-32
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F +TFSP +KS TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 68.2 bits (165), Expect(3) = 3e-31
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLY-EVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 62.0 bits (149), Expect(3) = 3e-31
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 546
+G +TN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 547 DCRP 558
P
Sbjct: 1202 AAHP 1205
Score = 51.2 bits (121), Expect(3) = 3e-31
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F +TFSP +K TVR VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKLTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 65.5 bits (158), Expect(3) = 5e-30
Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL+G L E V+MQ+P GFI + + VCRLHK +YGL+QAPRAWF++ LL GF+ +
Sbjct: 1050 FLNGDLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSA 1109
Score = 62.4 bits (150), Expect(3) = 5e-30
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +1
Query: 373 GPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMID 549
G +T A+T I LNS FS+KDLGE+++FLG++ T++ L L+Q K +LL KT+M+
Sbjct: 1138 GSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVH 1197
Query: 550 CRPS 561
C+P+
Sbjct: 1198 CKPA 1201
Score = 49.7 bits (117), Expect(3) = 5e-30
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F++TFSP VK TVR+V ++A+SR W I+QLDV NA
Sbjct: 1014 FTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNA 1049
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 71.6 bits (174), Expect(3) = 8e-30
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FLHG L E VYM++P G+ + HVCRL + +YGL+QAPRAWF +FS FLL+ GF S
Sbjct: 953 FLHGFLNEEVYMEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSS 1012
Score = 52.8 bits (125), Expect(3) = 8e-30
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
F TFSP V+ TVRI+LSLAV+ GW++ QLDVKNA
Sbjct: 917 FGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNA 952
Score = 52.4 bits (124), Expect(3) = 8e-30
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +1
Query: 298 ASMLI*HSRDGPXXXXXXXXXXXXSGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAH 477
+S+ HS G +G + + FI L++ FSMKDLG+L++FLGVE
Sbjct: 1016 SSLFFYHSSLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQ 1075
Query: 478 RTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
L L+Q K L+LL + MID +P
Sbjct: 1076 ANEKGLFLSQTKYALDLLQRASMIDAKP 1103
>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
polyprotein from Arabidopsis arenosa [Arabidopsis
thaliana]
Length = 1194
Score = 68.9 bits (167), Expect(3) = 2e-29
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G+L E VY+ +P GFI ++VC L K ++GL+QAPRAW+Q+ GFLL CGF S
Sbjct: 1012 FLQGRLTEDVYVAQPPGFINPDRPNYVCHLKKALHGLKQAPRAWYQELRGFLLTCGFTNS 1071
Score = 54.3 bits (129), Expect(3) = 2e-29
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 546
+G N+N + FI L + FS+KDLG+L +FL +EA RT + L L Q+ L+LL KT+M+
Sbjct: 1099 TGSNSNLIAQFITCLANRFSLKDLGQLSYFLEIEATRTKAGLHLMQRRYVLDLLTKTKML 1158
Query: 547 DCR 555
D +
Sbjct: 1159 DAK 1161
Score = 52.0 bits (123), Expect(3) = 2e-29
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+S TFSP +KS TV+ VL +AVSR W IRQLD+ NA
Sbjct: 976 YSNTFSPVIKSTTVQTVLDIAVSRSWDIRQLDINNA 1011
>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
Length = 478
Score = 68.9 bits (167), Expect(3) = 3e-28
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L E V+M +P GFI + HVC+L K IYGL+QAPRAW+ + FLLQ GF+ S
Sbjct: 71 FLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELCQFLLQFGFINS 130
Score = 55.8 bits (133), Expect(3) = 3e-28
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+S+TFSP +K TVR+VLSLAVS+GW +RQLDV NA
Sbjct: 35 YSETFSPVIKPTTVRLVLSLAVSQGWSLRQLDVNNA 70
Score = 46.6 bits (109), Expect(3) = 3e-28
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKDTL-ELLFKTEMI 546
+G N A FI L+ FS+KDLG L +FLGVE ++ L L+Q+ + +LL +T M
Sbjct: 158 TGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVTSHTNGLFLSQRKYIADLLNRTHMT 217
Query: 547 DCRPS 561
+ +P+
Sbjct: 218 EAKPA 222
>emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]
Length = 1501
Score = 71.2 bits (173), Expect(3) = 5e-28
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FL+G L E VYM++P G+I + HVC L K +YGL+QAPRAWFQ+FS FLL GF
Sbjct: 937 FLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGF 993
Score = 52.4 bits (124), Expect(3) = 5e-28
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
++ TFSP VK+ TVR+VLSLAV+ W +RQLDVKNA
Sbjct: 901 YTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNA 936
Score = 47.0 bits (110), Expect(3) = 5e-28
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 259 FSFTVWFS*KLNYASMLI*HSRDGPXXXXXXXXXXXXSGPNTNALTGFIGHLNS*FSMKD 438
F T+ FS S+ + H + +G N + L F L+S F+ KD
Sbjct: 987 FLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKD 1046
Query: 439 LGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
LG L +FLG+EA T L ++Q K ++L + +++D +P
Sbjct: 1047 LGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP 1087
>emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera]
Length = 1239
Score = 71.2 bits (173), Expect(3) = 5e-28
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FL+G L E VYM++P G+I + HVC L K +YGL+QAPRAWFQ+FS FLL GF
Sbjct: 820 FLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGF 876
Score = 52.4 bits (124), Expect(3) = 5e-28
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
++ TFSP VK+ TVR+VLSLAV+ W +RQLDVKNA
Sbjct: 784 YTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNA 819
Score = 47.0 bits (110), Expect(3) = 5e-28
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 259 FSFTVWFS*KLNYASMLI*HSRDGPXXXXXXXXXXXXSGPNTNALTGFIGHLNS*FSMKD 438
F T+ FS S+ + H + +G N + L F L+S F+ KD
Sbjct: 870 FLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKD 929
Query: 439 LGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
LG L +FLG+EA T L ++Q K ++L + +++D +P
Sbjct: 930 LGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKP 970
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 68.2 bits (165), Expect(3) = 7e-28
Identities = 31/60 (51%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FLHG L E +YM++ GF+ + HVC+L + +YGL+QAPRAWF+ FS +L + GFL+S
Sbjct: 987 FLHGYLNEDIYMKQHVGFVDPKFPQHVCKLRRSLYGLKQAPRAWFRCFSDYLEELGFLES 1046
Score = 53.5 bits (127), Expect(3) = 7e-28
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +1
Query: 370 SGPNTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMI 546
+G N++ ++ I +LNS FSMKDLG +++FLG+E L LTQ K ++LL KT++
Sbjct: 1074 TGNNSSHISHLIHNLNSLFSMKDLGSVHYFLGIETVYNGDHLHLTQHKYIVDLLKKTKLH 1133
Query: 547 DCRP 558
D RP
Sbjct: 1134 DSRP 1137
Score = 48.5 bits (114), Expect(3) = 7e-28
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKN 110
+++TFSP VK T+R+VL+LAVS W IRQLDV+N
Sbjct: 951 YTETFSPVVKHSTIRLVLALAVSHRWPIRQLDVQN 985
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 63.2 bits (152), Expect(3) = 1e-27
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FLHG L E VYM++P G+ K+ ++VC+L K +YGL+QAPRAW+ + S L + GF+ S
Sbjct: 998 FLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPS 1057
Score = 58.5 bits (140), Expect(3) = 1e-27
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RIVLSLAVSRGW +RQLDVKNA
Sbjct: 962 YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNA 997
Score = 47.8 bits (112), Expect(3) = 1e-27
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 385 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
+A + + L+ F++KDLG+L++FLG+E H+ L L+Q K +LL + M +C+P
Sbjct: 1090 DATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKP 1148
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 65.1 bits (157), Expect(3) = 1e-27
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FLHG L E VYMQ+P GF + D+VC+L K +YGL+QAPRAW+ + S L++ GF
Sbjct: 1050 FLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGF 1106
Score = 55.8 bits (133), Expect(3) = 1e-27
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RI+LS+AVSRGW +RQLDV+NA
Sbjct: 1014 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNA 1049
Score = 48.1 bits (113), Expect(3) = 1e-27
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 388 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
A T + LN F++KDLG+L++FLG+E + S+ + LTQ K +LL + M +C+P
Sbjct: 1143 ATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKP 1200
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 72.0 bits (175), Expect(3) = 1e-27
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FL G L E VY+ +P GFI + HVCRL+K +YGL+QAPRAW+Q+ FLLQ GF+ S
Sbjct: 1034 FLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNS 1093
Score = 48.5 bits (114), Expect(3) = 1e-27
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+S+TFSP +KS T+R VL +AV R W I Q+D+ NA
Sbjct: 998 YSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNA 1033
Score = 48.5 bits (114), Expect(3) = 1e-27
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 385 NALT-GFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKDTL-ELLFKTEMIDCRP 558
NAL F L S FS+KDLG L +FLG+EA RTS L L Q+ + +LL K M+D +P
Sbjct: 1124 NALVQAFNASLASRFSLKDLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKP 1183
>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
Length = 1950
Score = 75.9 bits (185), Expect(3) = 2e-27
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FLHG L E VY Q+P GF+ D+VCRL K +YGL+QAPRAW+Q+F+ F+ Q GF+ +
Sbjct: 1547 FLHGHLEETVYCQQPPGFVDPGAPDYVCRLQKSLYGLKQAPRAWYQRFATFIGQLGFV-T 1605
Query: 290 SIMHLCLFDILEMVQLSYFFMLTTSFFL 373
S LF + E LSY + L
Sbjct: 1606 SASDTSLFILREGTSLSYLLLYVDDIVL 1633
Score = 50.1 bits (118), Expect(3) = 2e-27
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ +TFSP VK T+R VLS+A SR W I QLDVKNA
Sbjct: 1511 YDETFSPVVKPATIRSVLSIAASRAWPIHQLDVKNA 1546
Score = 42.7 bits (99), Expect(3) = 2e-27
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 391 LTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMIDCRPS 561
L + L+S F+M DLG L+ FLG+ R+S L L+Q+ +ELL + M +C P+
Sbjct: 1641 LQRIMARLSSEFAMTDLGALHHFLGITVTRSSDGLFLSQRQYAVELLQRAGMAECHPT 1698
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1621
Score = 63.9 bits (154), Expect(3) = 3e-27
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FLHG L E VYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 780 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 836
Score = 55.5 bits (132), Expect(3) = 3e-27
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 744 YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 779
Score = 48.5 bits (114), Expect(3) = 3e-27
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 388 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 561
A + +L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P+
Sbjct: 873 ATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPA 931
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 63.9 bits (154), Expect(3) = 5e-27
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FLHG L E VYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1051 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1107
Score = 55.5 bits (132), Expect(3) = 5e-27
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 1015 YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1050
Score = 47.8 bits (112), Expect(3) = 5e-27
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 388 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 561
A + L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P+
Sbjct: 1144 ATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPA 1202
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 63.9 bits (154), Expect(3) = 5e-27
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FLHG L E VYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1058 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1114
Score = 55.5 bits (132), Expect(3) = 5e-27
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RI+LSLAVS+GW +RQLDV+NA
Sbjct: 1022 YEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1057
Score = 47.8 bits (112), Expect(3) = 5e-27
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 388 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 561
A + L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P+
Sbjct: 1151 ATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPA 1209
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 61.6 bits (148), Expect(3) = 5e-27
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 280
FLHG L E VYM++P G+ K D+VC+L K +YGL+QAPRAW+ + S L GF
Sbjct: 861 FLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGF 917
Score = 55.5 bits (132), Expect(3) = 5e-27
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RI+LS+AVSRGW +RQLDV+NA
Sbjct: 825 YEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNA 860
Score = 50.1 bits (118), Expect(3) = 5e-27
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 385 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
+A+ + L F++KDLG+L++FLG+E ++ SS + LTQ K +LL + M DC+P
Sbjct: 953 DAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKP 1011
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 63.2 bits (152), Expect(3) = 5e-27
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 113 FLHGKLYE-VYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 289
FLHG L E VYM++P G+ K+ ++VC+L K +YGL+QAPRAW+ + S L + GF+ S
Sbjct: 944 FLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPS 1003
Score = 58.5 bits (140), Expect(3) = 5e-27
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +3
Query: 6 FSKTFSPSVKSVTVRIVLSLAVSRGWQIRQLDVKNA 113
+ TFSP VK+ T+RIVLSLAVSRGW +RQLDVKNA
Sbjct: 908 YEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNA 943
Score = 45.4 bits (106), Expect(3) = 5e-27
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 385 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRP 558
+A + + L+ F++KDLG+L++ LG+E H+ L L+Q K +LL + M +C+P
Sbjct: 1036 DATSTLLQELSKDFALKDLGDLHYLLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKP 1094