BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00023913
         (4018 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   533   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   529   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           533   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   526   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   530   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        575   0.0  
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   504   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   544   0.0  
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    512   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   545   0.0  
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   531   0.0  
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   476   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              468   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     533   0.0  
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   483   0.0  
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                455   0.0  
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               455   0.0  
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   441   0.0  
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     422   0.0  
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   498   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  533 bits (1373), Expect(3) = 0.0
 Identities = 275/558 (49%), Positives = 378/558 (67%), Gaps = 3/558 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+TA YLIN+ P   I  KT  E+W+G    Y NL+  GC AY H  EGKLEPRA+
Sbjct: 599  WAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAK 658

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            K +FV Y +GVKG+++W   +   +  +SR+VVF  DE  L       T+ S        
Sbjct: 659  KGVFVGYGDGVKGFRIWSPAE--KRVIMSRNVVF--DESPLLRTIVKPTTTSETGSLDKQ 714

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQ--LARDRTRRTRVAP-TRYG 1140
            +E ++    +N+ D +                    +D    +A+DR RR  V P TRYG
Sbjct: 715  VEFQVI---QNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYG 771

Query: 1139 YADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 960
            + D++ +AL  AE ++ +E ++Y+EA    + ++W  AM +EM+SL KN+TW+LV +P G
Sbjct: 772  FEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSG 831

Query: 959  QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLAL 780
            +++++CKW++K KE  S     ++KAR++ARGF Q+ G+D+NE+FSPVV+HTSIRVLLA+
Sbjct: 832  RKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAI 891

Query: 779  VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 600
            V   ++ELEQ+DVKT FLHG L+E+I+M+QP GF   G    VC LKKSLYGL+QSPRQW
Sbjct: 892  VAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQW 951

Query: 599  YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 420
            Y +FD  M K  Y RS +D CVY   ++    ++L+LYVDDMLIA+    +I+ LK LLS
Sbjct: 952  YKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLS 1011

Query: 419  KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 240
             EFEMKDLG A++ILGMEI R+R + +LF+SQ SYI K+L RFGMS +K + TP A +  
Sbjct: 1012 AEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIH 1071

Query: 239  LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 60
            L++  +P +++EK  M +VPYASA+GS+MY+MVCT+PDLA+A SVVSRFM  PGR HW+A
Sbjct: 1072 LTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQA 1131

Query: 59   VKWVFRYLKGTSDYGLCY 6
            VK +FRYL+GTSD GL Y
Sbjct: 1132 VKRIFRYLRGTSDVGLIY 1149



 Score =  380 bits (977), Expect(3) = 0.0
 Identities = 184/356 (51%), Positives = 250/356 (70%), Gaps = 7/356 (1%)
 Frame = -1

Query: 2719 KNEKDKEVEQVNAIV--EDDYESADVLVVATDKCDKQ--WILDSGCSFHMTPNKDWFETY 2552
            K +K  E + V+A V  ED     D+ +VA +       W+LDSG S+H+ P ++WF TY
Sbjct: 240  KKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTY 299

Query: 2551 KRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGY 2372
            +++DGG + + N+  C V+G G+++++THDG+   L EVRH+P + +NLISL +LD  G+
Sbjct: 300  EQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGF 359

Query: 2371 TYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVT---HAKLSKSQLWHRKL 2201
            ++ G DGVL+V+KGS +++KGV    LY LQ STV G A + +   H K   ++LWH +L
Sbjct: 360  SWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-DMTKLWHIRL 418

Query: 2200 GHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLW 2021
            GH+ ERG+Q L K+ LL G KV  LEFCE+CVFGK  R KF  + + T+ TL Y+H D W
Sbjct: 419  GHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCW 478

Query: 2020 GPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRT 1841
            GP R E+LGG R+F+SIIDD S+  WVY+ K K EAF KFK WK ++E QTGKK+K+LRT
Sbjct: 479  GPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRT 538

Query: 1840 DNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1673
            DNGLEF   EFD+ C  EG+ RH+TV+ TPQQNG+AERMN+TLLER RCML +A +
Sbjct: 539  DNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGL 594



 Score =  149 bits (377), Expect(3) = 0.0
 Identities = 88/228 (38%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
 Frame = -3

Query: 3410 EIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DE--KKKAYNTLILSLSD 3237
            +I+KF G N FSLW++KM ALL   G    L  +     T      ++KA++T++L L+D
Sbjct: 7    KIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTIMLCLAD 66

Query: 3236 KILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLY 3057
             ++ EV+  +T+A +WLKLESLYMTK+L+N L LK + F  +M +G  L+ H+++ N L 
Sbjct: 67   DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126

Query: 3056 LDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK-- 2883
            L+L NI V+ +DED AL+LL SLP S+E FV     G++T++L++V  AL S+EL+ K  
Sbjct: 127  LELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKAN 186

Query: 2882 NELKEQTGEGLVVQGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGH 2739
                +    GL    R  R+                   +Y C E+GH
Sbjct: 187  GTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNY-CKEKGH 233


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  529 bits (1362), Expect(3) = 0.0
 Identities = 277/568 (48%), Positives = 374/568 (65%), Gaps = 11/568 (1%)
 Frame = -3

Query: 1694 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKE 1515
            HA   +  W EA +TA YLIN+ PS+ +  KT  E+W+G P  Y  L++ GC AYAH   
Sbjct: 605  HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664

Query: 1514 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1359
            GKLEPRA KC+F+ Y  GVKGYKLW  N    K F+SR VVF         +   ++ E 
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722

Query: 1358 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1182
                     +H D   G++VE     ++  +  +                +   +  +A+
Sbjct: 723  ELQRMHMQVEHVDDDTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781

Query: 1181 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1008
             +++RT   P R     +L  +AL  AE +E  +E A+Y+EA +C + + W  AM EEM 
Sbjct: 782  RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841

Query: 1007 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEV 828
            SL KN TWE+V  P  ++ +SCKWI+K KE  S    P++KARL+ARG++Q  G+D+N+V
Sbjct: 842  SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901

Query: 827  FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 648
            FSPVVKH+SIR  L++V   D+ELEQ+DVKT FLHG L+E I+M QP+GF+  G    VC
Sbjct: 902  FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961

Query: 647  LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 468
             LK+SLYGL+QSPRQW  +FD  M  +++ RS +DSCVYIK ++G   ++LLLYVDDMLI
Sbjct: 962  KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020

Query: 467  ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 288
            A+ +  EI  LK LLS EF+MKDLG AK+ILGMEI R+R  G LF+SQ +YI K+L RF 
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080

Query: 287  MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 108
            M  AKAV TP+A HFKLS+A  PS D E   M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 107  VVSRFMANPGRGHWEAVKWVFRYLKGTS 24
            +VSR+M+NPG+ HW AV+W+FRYL+GT+
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTT 1168



 Score =  370 bits (950), Expect(3) = 0.0
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -1

Query: 2761 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2588
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 2587 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2411
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 2410 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2243
            NLISL  LD  GY Y G DGVLKV KGS+V +KG V S  LY L+  T+ G    AA +T
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAIT 418

Query: 2242 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2063
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 2062 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 1883
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1882 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1703
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 1702 VRCMLFSANM 1673
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  127 bits (318), Expect(3) = 0.0
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3252
            K ++   N    FSLW++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 3251 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3072
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3071 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 2895
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 2894 ---LQRKNELKEQTGEGLVVQGRSDRR 2823
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  533 bits (1374), Expect(3) = 0.0
 Identities = 279/568 (49%), Positives = 376/568 (66%), Gaps = 11/568 (1%)
 Frame = -3

Query: 1694 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKE 1515
            HA   +  W EA +TA YLIN+ PS+ +  KT  E+W+G P  Y  L++ GC AYAH   
Sbjct: 607  HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 666

Query: 1514 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1359
            GKLEPRA KC+F+ Y  GVKGYKLW  N    K F+SR VVF         +   ++ E 
Sbjct: 667  GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 724

Query: 1358 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1182
                     +H D   G++VE  D  ++  +  +                +   D  +A+
Sbjct: 725  ELQRMHMQVEHVDDDTGVQVEPVDEQDDH-NNDVADDDAHDDVQQTPPILQLEEDLSIAQ 783

Query: 1181 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1008
             +++RT   P R     +L  +AL  AE +E  +E A+Y+EA +C + + W  AM EEM 
Sbjct: 784  RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 843

Query: 1007 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEV 828
            SL KN TWE+V  P  ++ +SCKWI+K KE  S    P++KARL+ARG++Q  G+D+N+V
Sbjct: 844  SLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDV 903

Query: 827  FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 648
            FSPVVKH+SIR  L++V   D+ELEQ+DVKT FLHG L+E I+M QP+GF+  G    VC
Sbjct: 904  FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 963

Query: 647  LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 468
             LK+SLYGL+QSPRQW  +FD  M  +++ RS +DSCVYIK ++G   ++LLLYVDDMLI
Sbjct: 964  KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1022

Query: 467  ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 288
            A+ +  EI  LK LLS EF+MKDLG AK+ILGMEI R+R  G LF+SQ +YI K+L RF 
Sbjct: 1023 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1082

Query: 287  MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 108
            M  AKAV TP+A HFKLS+A  PSTD E   M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1083 MQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1142

Query: 107  VVSRFMANPGRGHWEAVKWVFRYLKGTS 24
            +VSR+M+NPG+ HW A++W+FRYL+GT+
Sbjct: 1143 LVSRYMSNPGKEHWRALQWIFRYLRGTT 1170



 Score =  367 bits (942), Expect(3) = 0.0
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -1

Query: 2761 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2588
            I   KKV  +  +RKN+KD +V   +A V DD +S D LVV         +WILDS CSF
Sbjct: 244  IDECKKV--QAKERKNKKDGKVSVASAAVSDD-DSGDCLVVFAGCVAGHDEWILDSACSF 300

Query: 2587 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2411
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 301  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 360

Query: 2410 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2243
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 361  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVT 420

Query: 2242 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2063
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 421  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVH 480

Query: 2062 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 1883
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 481  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 540

Query: 1882 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1703
            +E QT +KVK L TDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 541  IERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 600

Query: 1702 VRCMLFSANM 1673
             RCML  A M
Sbjct: 601  ARCMLSHARM 610



 Score =  125 bits (313), Expect(3) = 0.0
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3252
            K ++   N    FSLW++ M  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 4    KFDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 63

Query: 3251 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3072
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  HI E
Sbjct: 64   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAE 123

Query: 3071 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 2895
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 124  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 183

Query: 2894 ---LQRKNELKEQTGEGLVVQGRSDRR 2823
               + + +      GE L V+GR++ +
Sbjct: 184  MKIMVQNDGSSSSKGEALHVRGRTENK 210


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  526 bits (1356), Expect(3) = 0.0
 Identities = 276/568 (48%), Positives = 373/568 (65%), Gaps = 11/568 (1%)
 Frame = -3

Query: 1694 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKE 1515
            HA   +  W EA +TA YLIN+ PS+ +  KT  E+W+G P  Y  L++ GC AYAH   
Sbjct: 605  HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDN 664

Query: 1514 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1359
            GKLEPRA KC+F+ Y  GVKGYKLW  N    K F+SR VVF         +   ++ E 
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722

Query: 1358 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1182
                     +H D   G++VE     ++  +  +                +   +  +A+
Sbjct: 723  ELQRMHMQVEHVDDYTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781

Query: 1181 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1008
             +++RT   P R     +L  +AL  AE +E  +E A+Y+EA +C + + W  AM EEM 
Sbjct: 782  RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841

Query: 1007 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEV 828
            SL KN TWE+V  P  ++ +SCKWI+K KE  S    P++KARL+ARG++Q  G+D+N+V
Sbjct: 842  SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901

Query: 827  FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 648
            FSPVVKH+SIR  L++V   D+ELEQ+DVKT FLHG L+E I+M QP+GF+  G    VC
Sbjct: 902  FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961

Query: 647  LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 468
             LK+SLYGL+QSPRQW  +FD  M  +++ RS +DSCVYIK ++G   ++LLLYVDDMLI
Sbjct: 962  KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020

Query: 467  ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 288
            A+ +  EI  LK LLS EF+MKDLG AK+IL MEI R+R  G LF+SQ +YI K+L RF 
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080

Query: 287  MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 108
            M  AKAV TP+A HFKLS+A  PSTD E   M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 107  VVSRFMANPGRGHWEAVKWVFRYLKGTS 24
            +VSR+M+NPG+ HW  V+W+FRYL+GT+
Sbjct: 1141 LVSRYMSNPGKEHWRVVQWIFRYLRGTT 1168



 Score =  369 bits (948), Expect(3) = 0.0
 Identities = 191/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -1

Query: 2761 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2588
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 2587 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2411
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 2410 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2243
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418

Query: 2242 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2063
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 2062 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 1883
            TT+ TL YVH DLWGPS+  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1882 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1703
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 1702 VRCMLFSANM 1673
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  127 bits (318), Expect(3) = 0.0
 Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 9/207 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3252
            K ++   N    FSLW++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 3251 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3072
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3071 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 2895
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 2894 ---LQRKNELKEQTGEGLVVQGRSDRR 2823
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  530 bits (1364), Expect(3) = 0.0
 Identities = 277/568 (48%), Positives = 375/568 (66%), Gaps = 11/568 (1%)
 Frame = -3

Query: 1694 HAIQCQYAWGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKE 1515
            HA   +  W EA +TA YLIN+ PS+ +  KT  E+W+G+P  Y  L++ GC AYAH   
Sbjct: 605  HARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDN 664

Query: 1514 GKLEPRARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFK--------VDEYYLKEN 1359
            GKLEPRA KC+F+ Y  GVKGYKLW  N    K F+SR VVF         +   ++ E 
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVFNESVMFTNSLPSEHVPEK 722

Query: 1358 GESSTSASSDH-DACAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLAR 1182
                     +H D   G++VE     ++  +  +                +   +  +A+
Sbjct: 723  ELQRMHMQVEHVDDDTGVQVEPVHEQDDH-NNDVADDDAHDDVQQTPPILQLEEELPIAQ 781

Query: 1181 DRTRRTRVAPTRY-GYADLISFALLTAETLEK-NELASYEEACKCKERKEWRQAMQEEMD 1008
             +++RT   P R     +L  +AL  AE +E  +E A+Y+EA +C + + W  AM EEM 
Sbjct: 782  RKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQ 841

Query: 1007 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEV 828
            SL KN TWE+V  P  ++ +SCKWI+K KE  S    P++KARL+ARG++Q  G+D+N+V
Sbjct: 842  SLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDV 901

Query: 827  FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 648
            FSPVVKH+SIR  L++V   D+ELEQ+DVKT FLHG L+E I+M QP+GF+  G    VC
Sbjct: 902  FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961

Query: 647  LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 468
             LK+SLYGL+QSPRQW  +FD  M  +++ RS +DSCVYIK ++G   ++LLLYVDDMLI
Sbjct: 962  KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGS-PIYLLLYVDDMLI 1020

Query: 467  ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 288
            A+ +  EI  LK LLS EF+MKDLG AK+ILGMEI R+R  G LF+SQ +YI K+L RF 
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080

Query: 287  MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 108
            M  AKAV TP+A HFKLS+A  PS D E   M +VPY+SA+GS+MY+MVC++PDL+YA S
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 107  VVSRFMANPGRGHWEAVKWVFRYLKGTS 24
            +VSR+M+NPG+ HW AV+W+FRYL+GT+
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTT 1168



 Score =  369 bits (947), Expect(3) = 0.0
 Identities = 190/370 (51%), Positives = 252/370 (68%), Gaps = 7/370 (1%)
 Frame = -1

Query: 2761 ISVMKKVILEGLKRKNEKDKEVEQVNAIVEDDYESADVLVVATDKC--DKQWILDSGCSF 2588
            I   KKV  +  +RKN+KD +V   +A   DD +S D LVV         +WILDS CSF
Sbjct: 242  IDECKKV--QAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSACSF 298

Query: 2587 HMTPNKDWFETYKRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKR 2411
            H+   ++WF +YK +  G V+ +G++ PC+++GIG+V++KT DG  R L  VR+IP + R
Sbjct: 299  HICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358

Query: 2410 NLISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG---IAAIVT 2243
            NLISL  LD  GY Y G DGVLKV KGS+V +KG + S  LY L+  T+ G    AA VT
Sbjct: 359  NLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVT 418

Query: 2242 HAKLSKSQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTY 2063
            + + SK+ LWH +LGH+S  G+ EL K+ LL G    K++FCE+C+FGK  RV+FN S +
Sbjct: 419  NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478

Query: 2062 TTRETLSYVHFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKM 1883
            TT+ TL YVH DLWGPS+  +LGG RY +++IDD S+KVW Y  K KD+ F+ FK WK M
Sbjct: 479  TTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1882 VEVQTGKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLER 1703
            +E QT +KVK LRTDNG EF +  F++ C +EG+VRH T+  TPQQNG+AERMNRT++ R
Sbjct: 539  IERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISR 598

Query: 1702 VRCMLFSANM 1673
             RCML  A M
Sbjct: 599  ARCMLSHARM 608



 Score =  120 bits (302), Expect(3) = 0.0
 Identities = 78/207 (37%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNL-GLDEALQGEAKMPTTY*DEK----KKAYNTLI 3252
            K ++   N    FSL ++KM  +L      DEAL    K    +  E+    +KA   + 
Sbjct: 2    KFDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61

Query: 3251 LSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDE 3072
            L L + IL+E    KTSAE+WLKLES+ M+K L++ + +K K FT KM +   +  H+ E
Sbjct: 62   LHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3071 FNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE- 2895
            F K+  DL +++V+YDDED  L+LL SLP SY  F D +   R+ +TL +V  AL +KE 
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181

Query: 2894 ---LQRKNELKEQTGEGLVVQGRSDRR 2823
               + + +      GE L V+GR++ R
Sbjct: 182  MKIMVQNDGSSSSKGEALHVRGRTENR 208


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  575 bits (1483), Expect(2) = 0.0
 Identities = 300/565 (53%), Positives = 382/565 (67%), Gaps = 10/565 (1%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAVNTA+YL+N+ PS AIGFKT EE+W G P +Y NLR+ GC AY H  +GKLE RA 
Sbjct: 611  WAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARAL 670

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA--- 1320
            K +FV YP+GVKGYK+WC+++   KC +SRDVVF  +   LKE+ E       +  A   
Sbjct: 671  KGVFVGYPDGVKGYKIWCKDQ--GKCIVSRDVVFH-ESVLLKESAEHDAGLQDNPAANKR 727

Query: 1319 ----CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALAD---YQLARDRTRRTR 1161
                 + + VEL     ++ +                      AD   YQLARDR RR  
Sbjct: 728  SGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVSELPQADLQNYQLARDRVRREV 787

Query: 1160 VAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWE 981
             AP RYGYADLI++ALL A+ +   E A++ EA +     +W +AMQ+EM+SL +N+TW 
Sbjct: 788  RAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWT 847

Query: 980  LVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTS 801
            L+  P  +RL++CKWI+K  E       P++KARL+ARGFTQ+ G+DFNE+FSPVVKH+S
Sbjct: 848  LIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSS 907

Query: 800  IRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGL 621
            IR+LLA+V   D+ELEQMDVKT FLHGNL+E+I M+QP+GF        VCLL KSLYGL
Sbjct: 908  IRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGL 967

Query: 620  RQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIR 441
            +QSPRQWY +FD+ M    Y RS +DSCVY    D G   +LLLYVDDMLIAS   SEI 
Sbjct: 968  KQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIE 1027

Query: 440  MLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQT 261
             LK LL  EFEMKDLG AKRILGM+I R+R+ G LF+SQ  YI K+L RF M   K VQT
Sbjct: 1028 RLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQT 1087

Query: 260  PLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANP 81
            PL   FKLS+A   +T ++++ M + PYA A+GS+MY+MVCT+ D+AYA SVVSR+++ P
Sbjct: 1088 PLGPQFKLSAA---TTSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCP 1144

Query: 80   GRGHWEAVKWVFRYLKGTSDYGLCY 6
            G+ HW AVKW+ RYLKG+S  GL Y
Sbjct: 1145 GKVHWNAVKWIMRYLKGSSTCGLLY 1169



 Score =  379 bits (974), Expect(2) = 0.0
 Identities = 186/362 (51%), Positives = 252/362 (69%), Gaps = 5/362 (1%)
 Frame = -1

Query: 2740 ILEGLKRKNEKDKEVEQVNAIVEDD----YESADVLVVATDKCDKQWILDSGCSFHMTPN 2573
            I +  ++K ++ +E     A+  DD    Y+SAD+LV +      QW++DSGCSFH+ P 
Sbjct: 246  IRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLVASNSNTKGQWVIDSGCSFHLCPE 305

Query: 2572 KDWFETYKRIDGGKVLLGNNKPCSVIGIGTV-RLKTHDGTERLLTEVRHIPKLKRNLISL 2396
            K  F  Y+ +DGG+VL+GNN  C+++GI    R +      R L EVRH P+LKRNLISL
Sbjct: 306  KTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISL 365

Query: 2395 GMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQL 2216
            GMLD  GY +K   G L+V KG+ +VMKGV  NGLY LQ S+V     +   ++  +++L
Sbjct: 366  GMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVSEEDRTKL 425

Query: 2215 WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 2036
            WH +LGH+S +GLQEL KQGLL GD++ +LEFCENC+FGK+ R KFN   + +++ L Y 
Sbjct: 426  WHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYA 485

Query: 2035 HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 1856
            H D WGP++  +L GGRYF+S+IDD S+KVW+YI K KD+A  KFK WK +VE Q+  K+
Sbjct: 486  HIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKL 545

Query: 1855 KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 1676
            K LRTDNGLEF +  F+E C K G+ RHKTV+ TPQQNGLAERMNRTL+++ RCML ++ 
Sbjct: 546  KCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSK 605

Query: 1675 MP 1670
            +P
Sbjct: 606  LP 607



 Score =  181 bits (460), Expect = 2e-42
 Identities = 100/200 (50%), Positives = 140/200 (70%), Gaps = 8/200 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*--DEKKK-----AYNT 3258
            + EIEKF    DFSLWK+KM ALL + GL+ AL  E    +T    D+K++     A++T
Sbjct: 5    RHEIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHST 64

Query: 3257 LILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHI 3078
            LILSL D ILRE+++ KT+  +W K+E+L M K+L++ L+LK + +TF M +G  +Q+HI
Sbjct: 65   LILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHI 124

Query: 3077 DEFNKLYLDLENIQ-VEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSS 2901
            D FNK+ LDLE ++ V+  DEDKA  LL SLPKSYE FVD + +GR T+TL+DV  +LSS
Sbjct: 125  DTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSS 184

Query: 2900 KELQRKNELKEQTGEGLVVQ 2841
            KE+Q+  EL+   GEGL+ +
Sbjct: 185  KEIQKNCELETSNGEGLMAR 204


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  504 bits (1299), Expect(3) = 0.0
 Identities = 265/574 (46%), Positives = 360/574 (62%), Gaps = 19/574 (3%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA  TAAYLIN+ P+ AI     EE+W    P Y +LR  G +AY H  +GKL+PRA 
Sbjct: 626  WAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKPRAL 685

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYY----LKE------NGESSTS 1341
            K  F+ YP G KGYK+W   +   KC ISR+VVF+    Y    +KE      N + +TS
Sbjct: 686  KGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTS 743

Query: 1340 ASSDHDACAG---------IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQL 1188
            +  + +  A          ++ +    TE +                       L  Y+L
Sbjct: 744  SEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKL 803

Query: 1187 ARDRTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMD 1008
            ARDR RR    PTR+     ++FAL+  E     E  SY+EA + ++ ++W  A  +EMD
Sbjct: 804  ARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMD 863

Query: 1007 SLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEV 828
            SL+KN TW+LVDKP  ++++ C+W++KLK         RFKARL+A+G+TQ+ G+D+ E+
Sbjct: 864  SLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEI 923

Query: 827  FSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVC 648
            F+PVVKH SIR+L++LV   D+ELEQMDVKTTFLHG+L+E+++M QP+GFV      KVC
Sbjct: 924  FAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVC 983

Query: 647  LLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLI 468
             LKKSLYGL+QSPRQW  +FD  M    ++RS+ D+CVY+K +     ++LLLYVDDMLI
Sbjct: 984  RLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLI 1043

Query: 467  ASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFG 288
            A  + +EI  +K  LS EFEMKD+G A RILG++I R+R  G L +SQ  YI K+L+RF 
Sbjct: 1044 AGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFN 1103

Query: 287  MSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAAS 108
            MS AK    P+  HFKL++      +DE  D   VPY+SA+GSIMY+M+ T+PDLAYA  
Sbjct: 1104 MSGAKMTNAPVGAHFKLAAV---REEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAIC 1160

Query: 107  VVSRFMANPGRGHWEAVKWVFRYLKGTSDYGLCY 6
            ++SR+M+ PG  HWEAVKWV RYLKG  D  L +
Sbjct: 1161 LISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVF 1194



 Score =  320 bits (821), Expect(3) = 0.0
 Identities = 157/346 (45%), Positives = 225/346 (65%), Gaps = 1/346 (0%)
 Frame = -1

Query: 2722 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 2543
            RK + + E +    ++ +    ++ L V        WILDSGC+ HMT  +DWF +++  
Sbjct: 272  RKKKMESEGQGEAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEK 331

Query: 2542 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 2363
                +LLG++      G GT+R+ TH GT ++L  V+++P L+RNLIS G LD  GY ++
Sbjct: 332  GNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHE 391

Query: 2362 GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 2183
            GG+G ++ FK +   ++G  SNGLY L  STV+         K+ K+ LWH +LGH+S  
Sbjct: 392  GGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETDKV-KTALWHSRLGHMSMN 450

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWG-PSRH 2006
             L+ L  +GL+   ++++LEFCE+CV GK+ +V FN   +T+ + LSYVH DLWG P+  
Sbjct: 451  NLKVLAGKGLIDRKEINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVT 510

Query: 2005 ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 1826
             ++ G +YF+SIIDD ++KVW+Y  K+KDE F KF  WK +VE Q  KKVK LRTDNGLE
Sbjct: 511  PSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLE 570

Query: 1825 FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1688
            F N  FD  C + G+ RH+T   TPQQNG+AERMNRT++E+VRC+L
Sbjct: 571  FCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLL 616



 Score =  119 bits (299), Expect(3) = 0.0
 Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 32/267 (11%)
 Frame = -3

Query: 3434 MAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEAL------------QGEAKMPT- 3294
            MA TT++ EI+ FNG  DFSLWK+++ A LG LGL + L            + EAK  + 
Sbjct: 1    MATTTTRVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESG 60

Query: 3293 -------------TY*DEKKKAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTL 3153
                            ++ ++A N +I  +SD +L +V    T+A++W  L   YM  +L
Sbjct: 61   DGESSGTKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSL 120

Query: 3152 SNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYE 2973
             N +Y + K ++FKM     +  ++DEF ++  +L +++++ D+E +A+++L+SLP S+ 
Sbjct: 121  PNRIYTQLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHI 180

Query: 2972 TFVDILKHGRETITLDDVVGALSSKELQRKNELKEQTGEGLVV----QGRS--DRREFXX 2811
                 LK+G +T+T+ DV  +  S E +    +    G+  V+    +GR      +   
Sbjct: 181  QLKHTLKYGNKTLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGG 240

Query: 2810 XXXXXXXXXXXXXXXSYFCHEEGHIRR 2730
                            ++C +EGH+++
Sbjct: 241  QGKGRSRSNSKTKVPCWYCKKEGHVKK 267


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  544 bits (1402), Expect(2) = 0.0
 Identities = 284/551 (51%), Positives = 369/551 (66%), Gaps = 2/551 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+TA YLIN+ PS AI  KT  E+W+G P +Y +LR+ GC AYAH   GKLEPRA 
Sbjct: 828  WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 887

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ YP GVKGYKLWC      K  ISR+VVF  +   L +   ++    S   A   
Sbjct: 888  KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVMLHDKPSTNVPVESQEKASVQ 944

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1134
            +E  ++     + +                   +      +A+DR +R    P RY   A
Sbjct: 945  VEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEA 1004

Query: 1133 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 957
            +++++AL  AE +E N E ++Y EA    +   W  AM +EM+SL KN TWELV  P  +
Sbjct: 1005 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 1064

Query: 956  RLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALV 777
            + + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN+VFSPVVKH+SIR LL++V
Sbjct: 1065 KPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIV 1124

Query: 776  TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 597
               D ELEQMDVKT FLHG L+E I+M QPKGFV  G    VC LKKSLYGL+QSPRQWY
Sbjct: 1125 AMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWY 1184

Query: 596  LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 417
             +FD  M    + RS++DSCVY+K +DG   ++LLLYVDDMLIA+ + SEI  LK  LS 
Sbjct: 1185 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1243

Query: 416  EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 237
            EFEMKDLG AK+ILGMEI R R+  +L++SQ  YI K+L RF M  AK V TPLA HF+L
Sbjct: 1244 EFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1303

Query: 236  SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 57
            SS L P +D +   M +VPY+SA+GS+MY+MVC++PDL++A SVVSR+MANPG+ HW+AV
Sbjct: 1304 SSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAV 1363

Query: 56   KWVFRYLKGTS 24
            +W+FRYL+GTS
Sbjct: 1364 QWIFRYLRGTS 1374



 Score =  376 bits (966), Expect(2) = 0.0
 Identities = 189/351 (53%), Positives = 245/351 (69%), Gaps = 6/351 (1%)
 Frame = -1

Query: 2704 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 2531
            KE E   A+V D+   A++LV      +   QWIL++ C +HM PN+DWF TY+ +  G 
Sbjct: 475  KEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGT 534

Query: 2530 VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 2351
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y GGDG
Sbjct: 535  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDG 594

Query: 2350 VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 2183
            +LKV KGS+VVMK  ++S  LY L+ +T++G  A V+ + LS S    LWH +LGH++E 
Sbjct: 595  ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHMTEI 653

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 2003
            GL EL K+GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 654  GLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 713

Query: 2002 TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 1823
            + GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 714  SFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEF 773

Query: 1822 LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
             +  F   C  EG+VRH TV  TPQQNG+AERMNRT++ + RC+L +A +P
Sbjct: 774  CSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLP 824



 Score =  137 bits (346), Expect = 3e-29
 Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 7/193 (3%)
 Frame = -3

Query: 3380 FSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLILSLSDKILREVTK 3213
            FSLW++KM A+L    LD+AL G  K    +  DEKK   KA + + L LS+ IL+EV K
Sbjct: 224  FSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEKKRDRKAMSYIHLHLSNNILQEVLK 283

Query: 3212 MKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQV 3033
             + +A +WLKLE + MTK L++ ++LK   F  K+ D   + +H+  F ++  DLE+++V
Sbjct: 284  EEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEV 343

Query: 3032 EYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQRK---NELKEQT 2862
            +YD+ED  L+LL SLP SY  F D + + R+T+TL +V  AL  KE  +K   +E     
Sbjct: 344  KYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQ 403

Query: 2861 GEGLVVQGRSDRR 2823
             EGL+V GR   +
Sbjct: 404  AEGLIVWGRQQEK 416


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  512 bits (1319), Expect(3) = 0.0
 Identities = 267/572 (46%), Positives = 365/572 (63%), Gaps = 17/572 (2%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA  TAAYLIN+ P+ AI     EE+W    P Y +LR  G +AY H  +GKL+PRA 
Sbjct: 636  WAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRAL 695

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYL----KENGESSTSASSDHD 1323
            K +F+ YP G KGYK+W   +H  KC ISR+V+F  +  Y     KE    S +  + H 
Sbjct: 696  KGIFIGYPAGTKGYKIWLLEEH--KCVISRNVLFHEESVYKDTMKKERVVESEAEPASHS 753

Query: 1322 ACAGIEV------------ELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARD 1179
                I+V            +++D  E+                       +LA+YQLARD
Sbjct: 754  KSTLIKVKTPGNLNSGEVIQVSDEEESDESVEEEQEPETQVELPETQTTSSLANYQLARD 813

Query: 1178 RTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLL 999
            R RR    P R+     ++FAL+T ETL   E  SY+EA   KE K+W+ A  EEMDSL+
Sbjct: 814  RERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSLI 873

Query: 998  KNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKP-RFKARLMARGFTQQAGIDFNEVFS 822
            KN TW LVDKP  ++++ C+W++KLK  GS   +P R+KA+L+A+G+T + G+D+ E+F+
Sbjct: 874  KNGTWVLVDKPQNRKIIGCRWLFKLKS-GSPGVEPVRYKAQLVAKGYTHREGVDYQEIFA 932

Query: 821  PVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLL 642
             VVKHTSIR+L+++V   D+ELEQMDVKT FLHG L+E+++M QP+G +      KVCLL
Sbjct: 933  LVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDGENKVCLL 992

Query: 641  KKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIAS 462
            KKSLYGL+QSPRQW  +F+  M   N++RS+ D+CVY+K +     ++LLLYVDDMLIA 
Sbjct: 993  KKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLYLLLYVDDMLIAG 1052

Query: 461  TNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMS 282
             + SEI  +K  LS EFEMKD+G A RILG++I R+   G L +SQ SYI  ++ RF M+
Sbjct: 1053 KSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYIHNVVQRFNMA 1112

Query: 281  QAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVV 102
            +AK  ++P+  HFKL++      DDE  D   VPYASA+GSIMY+M+  +PDLAY   +V
Sbjct: 1113 EAKVTRSPIGAHFKLAAV---RDDDECIDNNAVPYASAVGSIMYAMIGIRPDLAYVICLV 1169

Query: 101  SRFMANPGRGHWEAVKWVFRYLKGTSDYGLCY 6
            SR+MA PG  HWEAVKW+ RY++G+ D  L +
Sbjct: 1170 SRYMARPGSIHWEAVKWILRYMRGSQDLNLVF 1201



 Score =  311 bits (797), Expect(3) = 0.0
 Identities = 150/346 (43%), Positives = 223/346 (64%), Gaps = 1/346 (0%)
 Frame = -1

Query: 2722 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 2543
            RK + + E      ++ +    ++ L V        W+LDSGC+ HM+  +DWF +++  
Sbjct: 282  RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARRDWFCSFRED 341

Query: 2542 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 2363
             G  +LLG++      G G+++++TH GT   L  V+++P+L+RNLIS G LD  GY ++
Sbjct: 342  GGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYKHE 401

Query: 2362 GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 2183
            GGDG ++ FK     ++G   NGLY L  +TV+    +   +K  K++LWH +LGH+   
Sbjct: 402  GGDGKVRYFKNQKTALRGELVNGLYILDGNTVLSETCVAEGSK-GKTELWHSRLGHIGLN 460

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR-H 2006
             ++ L  +GL+  +++  L+FCENCV GKA +V FN   + + + L YVH DLWG +   
Sbjct: 461  NMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGSTNVT 520

Query: 2005 ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 1826
             +L G +YF+SIIDD ++KVW+Y  ++KDE F +F  WK++VE Q  KKVK LRTDNGLE
Sbjct: 521  PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLE 580

Query: 1825 FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1688
            F N++FD  C + G+ RHKT   TPQQNG+AERMNRT++E+VRCML
Sbjct: 581  FCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCML 626



 Score =  107 bits (266), Expect(3) = 0.0
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 37/269 (13%)
 Frame = -3

Query: 3425 TTSKQEIEKFNGSNDFSLWKMKMLALLGNLGL------------------------DEAL 3318
            T  K   + FN ++DFSLWK  M A LG  GL                        D   
Sbjct: 9    TILKTSFQVFNENSDFSLWKTCMKAHLGLAGLKGIIDDFDLTMTVPIPKSEGKKIEDGDE 68

Query: 3317 QGEAKMPTTY*D-----EKKKAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTL 3153
            QG++       D     + + A N +I  + D +LR++   K++AE+W  L   YM  +L
Sbjct: 69   QGDSSQTKIVPDLVKIEKSENAMNIIIAHVGDAVLRKIDHCKSAAEMWETLNKQYMETSL 128

Query: 3152 SNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYE 2973
             N +Y++ KF++FKM D K +  +++EF K+  +L ++++   +E +A++ L+ L   Y 
Sbjct: 129  PNRIYVQLKFYSFKMNDTKSINENVNEFLKIVAELSSLEINVVEEVRAILFLNRLSSRYS 188

Query: 2972 TFVDILKHGRETITLDDVVGALSS--KELQRKNELKEQTGEGLVV------QGRSDRREF 2817
                 LK+G + ++L DV+ A  S  +EL  + E  + T   L        Q R+     
Sbjct: 189  QLKHTLKYGNKALSLKDVISAARSLERELNEQKETDKNTSTVLYTNERSRPQTRNQNHNK 248

Query: 2816 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2730
                              ++C +EGH+++
Sbjct: 249  GGQGRGRSKSNSNAKLTCWYCKKEGHVKK 277


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  545 bits (1403), Expect(2) = 0.0
 Identities = 283/555 (50%), Positives = 374/555 (67%), Gaps = 5/555 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA NTA YLIN+ PS+ +  KT  EIW+G+P  Y  LR+ GC AYAH   GKLEPRA 
Sbjct: 614  WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAI 673

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENG---ESSTSASSDHDA 1320
            KC+F+ Y  GVKGYKLW  N   +K F+SR+V+F  +E+ +  +    +     S +   
Sbjct: 674  KCLFLGYGSGVKGYKLW--NPETNKTFMSRNVIF--NEFVMFNDSLPTDVIPGGSDEEQQ 729

Query: 1319 CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY- 1143
               ++VE  D  E +                         D  +A  RT+R+  AP R  
Sbjct: 730  YVSVQVEHVDDQETE-----IVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLI 784

Query: 1142 GYADLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKP 966
               D++ +A   AE +E   E A+Y EA    +R++W  A+QEEM SL KN TWELV  P
Sbjct: 785  EECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLP 844

Query: 965  VGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLL 786
              ++ V CKWI+K KE  S    PRFK RL+A+GF+Q AG+D+N+VFSPVVKH+SIR   
Sbjct: 845  KQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFF 904

Query: 785  ALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPR 606
            ++VT  D+ELEQ+DVKTTFLHG L+E+I+M QP+GF+  G    VC LK+SLYGL+QSPR
Sbjct: 905  SIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPR 964

Query: 605  QWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTL 426
            QWY +FD  M  + + RS+FDSCVYIK+++G   ++LLLYVDDMLIA+ +  +I  LK  
Sbjct: 965  QWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDMLIAAKSKEQITTLKKQ 1023

Query: 425  LSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACH 246
            LS EF+MKDLG AK+ILGMEI R+RN G LF+SQ SYI K+L RF M  AK V TP+A H
Sbjct: 1024 LSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPH 1083

Query: 245  FKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHW 66
            FKLS+    STD++   M +VPY+SA+GS+MY+MVC+ PDL++A S+VSR+MANPG+ HW
Sbjct: 1084 FKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHW 1143

Query: 65   EAVKWVFRYLKGTSD 21
            +AV+W+FRYL+GT+D
Sbjct: 1144 KAVQWIFRYLRGTAD 1158



 Score =  345 bits (886), Expect(2) = 0.0
 Identities = 182/357 (50%), Positives = 235/357 (65%), Gaps = 6/357 (1%)
 Frame = -1

Query: 2725 KRKNEKDKEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETY 2552
            K K + D +   V +    D  S D LVV         +WILD+ CSFH+  N+DWF +Y
Sbjct: 255  KEKRKSDGKASVVTSAENSD--SGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSY 312

Query: 2551 KRIDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHG 2375
            K +    V+ +G++ P  ++GIG+V++KTHDG  R L +VRHIP + RNLISL  LD  G
Sbjct: 313  KSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEG 372

Query: 2374 YTYKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG--IAAIVTHAKLSKSQLWHRK 2204
            Y Y G  GV+KV KGS+V M G + S  LY L+ ST+ G   AA VT  + SK+ LWH +
Sbjct: 373  YKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMR 432

Query: 2203 LGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDL 2024
            LGH+SE G+ EL K+ LL G     ++FCE+CVFGK  RVKFN S + T+  L YVH DL
Sbjct: 433  LGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADL 492

Query: 2023 WGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLR 1844
            WGPSR  +LGG RY ++IIDD S+K W Y  K KD+ F+ FK  K M+E QT K+VK L 
Sbjct: 493  WGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLC 552

Query: 1843 TDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1673
            TDNG EF +  FD+ C KEG+VRH T+  TPQQNG+AERMNRT++ + RCML +A M
Sbjct: 553  TDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARM 609



 Score =  133 bits (334), Expect = 8e-28
 Identities = 80/209 (38%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNLG-LDEALQGEAKMPTTY*--DEKKK---AYNTL 3255
            K ++   +    FSLW++KM A+L     LDEAL+   K  TT    +EK+K   A + +
Sbjct: 5    KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64

Query: 3254 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 3075
             L LS+ IL+EV + KT+AE+WLKLES+ M+K L++ +++K K F+ K+ +   + NHI 
Sbjct: 65   QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124

Query: 3074 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE 2895
             F ++  DL +++V++DDED  L+LL SLP SY  F   +   R+ +TL +V  AL ++E
Sbjct: 125  VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNRE 184

Query: 2894 LQR---KNELKEQTGEGLVVQGRSDRREF 2817
              +   ++      GE L V+GRS++R +
Sbjct: 185  KMKGMVQSYASSSKGEALQVRGRSEQRTY 213


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  531 bits (1368), Expect(2) = 0.0
 Identities = 277/553 (50%), Positives = 365/553 (66%), Gaps = 3/553 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA NTA YLIN+ PS+ +  KT  EIW+G+P  Y  LR+ GC AYAH    KLEPRA 
Sbjct: 614  WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAI 673

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA-CA 1314
            KC+F+ Y  GVKGYKLW  N   +K F+SR VVF     +            SD +    
Sbjct: 674  KCLFLGYGLGVKGYKLW--NPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYV 731

Query: 1313 GIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GY 1137
             ++VE  D  E +                         D  +A  RT+R+  AP R    
Sbjct: 732  SVQVEHVDDQETE-----IVGNDVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEE 786

Query: 1136 ADLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVG 960
             D++ +A   AE +E   E A+Y EA    +R++W  AMQEEM SL KN TWELV  P  
Sbjct: 787  CDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQ 846

Query: 959  QRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLAL 780
            ++ V CKWI+K KE  S    PRFKARL+A+GF+Q  G+D+N+VFSPVVKH+SIR   ++
Sbjct: 847  KKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSI 906

Query: 779  VTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQW 600
            V   D+ELEQ+DVKT FLHG L+E+I+M QP+GF+  G    VC LK+SLYGL+QSPRQW
Sbjct: 907  VAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 966

Query: 599  YLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLS 420
            Y +FD  M  + + RS+FDSCVYIK+++G   ++LLLYVDD+LIA+ +  +I  LK  LS
Sbjct: 967  YKRFDSFMLSHGFKRSEFDSCVYIKFVNGS-PIYLLLYVDDILIAAKSKEQITTLKKQLS 1025

Query: 419  KEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFK 240
             EF+MKDLG AK+ILGMEI R++N G LF+SQ SYI K+L  F M  AK V TP+A HFK
Sbjct: 1026 SEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVSTPIAPHFK 1085

Query: 239  LSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEA 60
            LS+    +TD++   M +VPY+SA+GS+MY+MVC++PDL++A S+VSR+M NPG+ HW+A
Sbjct: 1086 LSALQCANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKA 1145

Query: 59   VKWVFRYLKGTSD 21
            V+W+FRYL+GT+D
Sbjct: 1146 VQWIFRYLRGTAD 1158



 Score =  357 bits (916), Expect(2) = 0.0
 Identities = 181/355 (50%), Positives = 234/355 (65%), Gaps = 4/355 (1%)
 Frame = -1

Query: 2725 KRKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKR 2546
            K K + D +   V +    D     V+         +WILD+ CSFH+  N+DWF +YK 
Sbjct: 255  KEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKS 314

Query: 2545 IDGGKVL-LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYT 2369
            +  G V+ +GN+ P  ++GIG+V++KTHDG  R L +VRHIP + RNLISL  LD  GY 
Sbjct: 315  VQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYK 374

Query: 2368 YKGGDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIG--IAAIVTHAKLSKSQLWHRKLG 2198
            Y G  GV+KV KGS+V M G + S  LY L+ ST+ G   AA VT  + +K+ LWH +LG
Sbjct: 375  YSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLG 434

Query: 2197 HVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWG 2018
            H+SE G+ EL K+ LL G     ++FCE CVFGK  RVKFN S + T+  L YVH DLWG
Sbjct: 435  HMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWG 494

Query: 2017 PSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTD 1838
            PSR  +LGG RY ++IIDD S+KVW Y  K KD+ F+ FK WK M+E QT K+VK LRTD
Sbjct: 495  PSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTD 554

Query: 1837 NGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANM 1673
            N  EF +  FD+ C KEG+VRH T+  TPQQNG+AERMNRT++ + RCML +A M
Sbjct: 555  NAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARM 609



 Score =  139 bits (349), Expect = 1e-29
 Identities = 80/209 (38%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNLG-LDEALQGEAKMPTTY*D-----EKKKAYNTL 3255
            K ++   +    FSLW++KM A+L     LDEAL+   K  TT        + +KA + +
Sbjct: 5    KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTTGEKRKDRKALSLI 64

Query: 3254 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 3075
             L LS+ IL+EV + KT+AE+WLKLES+ M+K L++ +++K K F+ K+ +   + NHI 
Sbjct: 65   QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124

Query: 3074 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKE 2895
             F ++  DL +++V++DDED  L+LL SLP SYE F D +   R+ +TL +V  AL ++E
Sbjct: 125  VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNRE 184

Query: 2894 LQR---KNELKEQTGEGLVVQGRSDRREF 2817
              +   +++     GE L V+GRS++R +
Sbjct: 185  KMKGMVQSDASSSKGEALQVKGRSEQRTY 213


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  476 bits (1226), Expect(3) = 0.0
 Identities = 254/549 (46%), Positives = 348/549 (63%), Gaps = 18/549 (3%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA  TAAYL+N+ P+ A+     EE+W    P Y +LR  GC+AY H  +GKL+PRA 
Sbjct: 617  WAEAAATAAYLVNRSPASAVDHNVPEELWLDKKPGYKHLRRFGCIAYVHLDQGKLKPRAL 676

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYY--LKENGESSTSASSD---- 1329
            K +F+ YP+G KGYK+W  ++   KC ISR++VF  ++ Y  ++E+ E S    SD    
Sbjct: 677  KGVFLGYPQGTKGYKVWLLDEE--KCVISRNIVFNENQVYKDIRESSEQSVKDISDLEGY 734

Query: 1328 ---------HDACA---GIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLA 1185
                     H  C+   G+ +E  D+  +                        L++YQ A
Sbjct: 735  NEFQVSVKEHGECSKTGGVTIEEIDQESDS---------ENSVTQEPLIASIDLSNYQSA 785

Query: 1184 RDRTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDS 1005
            RDR RR    P +       + AL+ AE +E  E   Y +A K K   +W   M+EE+DS
Sbjct: 786  RDRERRAPNPPQKLADYTHFALALVMAEEIESEEPQCYHDAKKDKHWIKWNGGMKEEIDS 845

Query: 1004 LLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVF 825
            LLKN TW++V+ P  Q+++SC+W++KLK         R+KARL+ARGFTQQ GID+ EVF
Sbjct: 846  LLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVF 905

Query: 824  SPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCL 645
            +PVVKH SIR+L++ V + DMELEQMDVKTTFLHG LD+ ++M QP+GF  + +  +VCL
Sbjct: 906  APVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQVLYMEQPEGFEVNPEKDQVCL 965

Query: 644  LKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIA 465
            LKKSLYGL+Q+PRQW  KF   M    + RS+ DSCVY+K ++ G  V+LLLYVDDML+A
Sbjct: 966  LKKSLYGLKQAPRQWNKKFHAFMLSLQFARSEHDSCVYVKEVNPGEFVYLLLYVDDMLLA 1025

Query: 464  STNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGM 285
            + + SEI  LK  LS +FEMKD+G A RILG++I RNR +G L +SQT Y+ K++ RF M
Sbjct: 1026 AKSKSEISKLKEALSLKFEMKDMGAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRM 1085

Query: 284  SQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASV 105
            + AK V TP+  HFKL+S +    +    D   VPY+SA+GS+MY+M+ T PD+AYA  +
Sbjct: 1086 ADAKVVSTPMGAHFKLTSLID---EIGSVDPEVVPYSSAVGSVMYAMIGTIPDVAYAMGL 1142

Query: 104  VSRFMANPG 78
            VSRFM+ PG
Sbjct: 1143 VSRFMSRPG 1151



 Score =  303 bits (777), Expect(3) = 0.0
 Identities = 149/344 (43%), Positives = 216/344 (62%)
 Frame = -1

Query: 2719 KNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRID 2540
            K + + E +    ++ +    ++ L +   +   +W++DSGC++HMT   DWF  +   +
Sbjct: 274  KRKLENEGQGKAGVITEKLVYSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENE 333

Query: 2539 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2360
               +LLG++      G GTV++ TH G+ R+L  VR +P L+RNLIS G LD  GY ++G
Sbjct: 334  TTMILLGDDHTVESKGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEG 393

Query: 2359 GDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSERG 2180
            GDG ++ +K +   + G   NGLY L   TV+     V  +   K++LWH +LGH+S   
Sbjct: 394  GDGKVRFYKENKTALCGNLVNGLYVLDGHTVVNENCNVEGSN-EKTELWHCRLGHMSLNN 452

Query: 2179 LQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHET 2000
            ++ L ++GLL    + +L FCENCV GK+ ++ FN   + T E L Y+H DLWG      
Sbjct: 453  MKILAEKGLLEKKDIKELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK----- 507

Query: 1999 LGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEFL 1820
                +YF+SIIDD S+KVW+   KTKDE F +F  WK++VE Q  KKVK LRTDNGLEF 
Sbjct: 508  ----QYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFC 563

Query: 1819 NMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1688
            N++FDE C + G+ RH+T   TPQQNG+A+RMNRTL+E+VRC+L
Sbjct: 564  NLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCLL 607



 Score =  119 bits (297), Expect(3) = 0.0
 Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 36/269 (13%)
 Frame = -3

Query: 3428 ATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQG---------------EAKMPT 3294
            A ++K EI+ FNG  DFSLWK+++ A LG LGL  AL                 E++   
Sbjct: 2    AMSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESED 61

Query: 3293 TY*DEKK--------------KAYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKT 3156
               D KK              +A N +I  ++D +L +V    T+AE+W  L  L+M  +
Sbjct: 62   DETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETS 121

Query: 3155 LSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSY 2976
            L N +Y + + ++FKM D   +  + DEF ++  +L ++Q++  +E +A+++L+SLP SY
Sbjct: 122  LPNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSY 181

Query: 2975 ETFVDILKHGRETITLDDVVGALSSKELQRK-NELKE------QTGEGLVVQGRSDRREF 2817
                  LK+G +T+++ DVV   S+K L+R+ +E KE       T      +GR   +  
Sbjct: 182  IQLKHTLKYGNKTLSVQDVVS--SAKSLERELSEQKETIRAPASTALYTAERGRPQTKNT 239

Query: 2816 XXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2730
                              +FC +EGH+++
Sbjct: 240  QGQGKGRGRSNSKSRLTCWFCKKEGHVKK 268


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  468 bits (1204), Expect(3) = 0.0
 Identities = 241/560 (43%), Positives = 350/560 (62%), Gaps = 5/560 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGC---VAYAHTKEGKLEP 1500
            W EAV TA Y+IN+ PS AI  KT  E+W G P  Y +L + GC   V Y   +  KL+P
Sbjct: 610  WAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDP 669

Query: 1499 RARKCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDA 1320
            ++RKC+F+ Y + VKGY+LW  +    K  +SRDVVF  +E   K+  +S++  ++    
Sbjct: 670  KSRKCIFLGYADNVKGYRLW--DPTARKVVVSRDVVFAENELQSKQKNDSTSKETAI--- 724

Query: 1319 CAGIEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRYG 1140
                 V++ ++++                                R  TR+T+    +  
Sbjct: 725  -----VQMEEKSKESDSSEAEPVHEEQEPDDVNNG---------VRRSTRQTQKPSWQSD 770

Query: 1139 YADLI--SFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKP 966
            Y      ++ L+T    E+ E +++ EA    +  +W  AM EEM++L +NKTWELV+ P
Sbjct: 771  YVMTSHDAYCLIT----EEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELP 826

Query: 965  VGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLL 786
             G++ +  KW+YK+K DG+ D   R++ARL+ +G+ Q+ GIDFNE+FSPVV+ T+IRV+L
Sbjct: 827  KGRKAIGNKWVYKIKRDGN-DQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVL 885

Query: 785  ALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPR 606
            A+    D+ LEQ+DVKT FLHG L+E+I+M QP+GF + G    VC L KSLYGL+Q+PR
Sbjct: 886  AMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPR 945

Query: 605  QWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTL 426
             WY +FD  +   +Y R   D C Y K  DG   + LLLYVDDML+   N   ++ LK  
Sbjct: 946  CWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQ 1005

Query: 425  LSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACH 246
            L++EF+MKDLG A +ILGM+I R+R   ++++SQ +Y+ K+L RF M   K + TPL  +
Sbjct: 1006 LAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVN 1065

Query: 245  FKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHW 66
            FKLSS +SPS + E+ +M +VPYASA+GS+MY+M+CT+PD+A A  VVSRFMA+PG+ HW
Sbjct: 1066 FKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHW 1125

Query: 65   EAVKWVFRYLKGTSDYGLCY 6
             AVK + RY+KGTS   +C+
Sbjct: 1126 NAVKRIMRYIKGTSGVAVCF 1145



 Score =  305 bits (780), Expect(3) = 0.0
 Identities = 161/361 (44%), Positives = 229/361 (63%), Gaps = 9/361 (2%)
 Frame = -1

Query: 2728 LKRKNEKDKEVEQVNAIVEDDYESADVL---VVATDKCDKQ----WILDSGCSFHMTPNK 2570
            +K+  EK+ E       V    +  ++L      + K +++    WI+DSG ++HMTP++
Sbjct: 246  IKKNGEKNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHR 305

Query: 2569 DWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGM 2390
            DWF +Y+ I  G V +GN+    + G+GT+RLK HDGT R +  VRH+  LK+NL+S+G 
Sbjct: 306  DWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQ 365

Query: 2389 LDHHGYTYKGGDGVLKVFKGSMVVMKGVR-SNGLYTLQASTVIGIAAIVTHAKLSKS-QL 2216
            LD  G       G+LKV KG++VVMK  + ++ LY L   T+    A V  A   ++  +
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMM 425

Query: 2215 WHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYV 2036
            WH++LGH+SERGL+ L ++ LL+G K   L FCE+CV  K  R+KF   T  ++  L  +
Sbjct: 426  WHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLI 485

Query: 2035 HFDLWGPSRHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKV 1856
            H D+W  S   +LGG RYF+S IDD S+++WVY  K K + F  FKA+K  +E++TGKK+
Sbjct: 486  HSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKI 544

Query: 1855 KKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSAN 1676
            K LRTDNG E+++ EF   C +EG+VR  TV  TPQQNG+AERMNRTLLER R ML +A 
Sbjct: 545  KCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 1675 M 1673
            M
Sbjct: 605  M 605



 Score =  111 bits (278), Expect(3) = 0.0
 Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
 Frame = -3

Query: 3419 SKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*DEKKK-----AYNTL 3255
            +K EIEKFNG N FSLWK+K+ A+L      +A+ G    P    DEK K     A   L
Sbjct: 3    AKFEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGR---PADITDEKWKEMDDNAVANL 58

Query: 3254 ILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHID 3075
             L+++D +L  + + KT+ E+W  L  LY  K+L N ++LK + +T +M +   + +HI+
Sbjct: 59   HLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHIN 118

Query: 3074 EFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGR--ETITLDDVVGALSS 2901
              N L+  L     +  + ++A +LL SLP SY+  +  + +    +T+  DDV GA+  
Sbjct: 119  TLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILE 178

Query: 2900 KELQRKN-----ELKEQTGEGLVVQGRSDRR 2823
            +E +RKN     E  +Q     + +GRS  R
Sbjct: 179  EESRRKNKEERSESSKQAEALTMTRGRSTER 209


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  533 bits (1374), Expect(2) = 0.0
 Identities = 279/551 (50%), Positives = 364/551 (66%), Gaps = 2/551 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+TA YLIN+ P  AI  KT  E+W+G P +Y +LR+ GC AYAH   GKLEPRA 
Sbjct: 593  WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAI 652

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ Y  GVKGYKLWC      K  ISR+VVF  +   L +   ++    S   A   
Sbjct: 653  KCIFLGYASGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 709

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1134
            +E  ++     + +                          +A+D+ +R    P RY   A
Sbjct: 710  VEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEA 769

Query: 1133 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 957
             ++++AL  AE +E N E ++Y EA    +   W  AM +EM+SL KN TWELV  P  +
Sbjct: 770  KIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEK 829

Query: 956  RLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALV 777
            + + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN+VFSPVVKH+SIR LL +V
Sbjct: 830  KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIV 889

Query: 776  TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 597
               D ELEQM+VKT FLHG L+E I+M QP+GFV  G    VC LKKSLYGL+QSPRQWY
Sbjct: 890  AMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWY 949

Query: 596  LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 417
             +FD  M    +  S++DSCVY+K +DG V ++LLLYVDDMLIA+ + SEI  LK  LS 
Sbjct: 950  KRFDSFMLSQKFRISNYDSCVYLKVVDGSV-IYLLLYVDDMLIAAKDKSEIEKLKAQLSS 1008

Query: 416  EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 237
            EFEMKDLG AK+ILGMEI R R+ G+L++SQ  YI K+L RF M  AK V TPLA HF+L
Sbjct: 1009 EFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRL 1068

Query: 236  SSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAV 57
            SS L P +D +   M +VPY+SA+GS+MY+MVC +PDL++A SVV+R+MANPG+ HW+AV
Sbjct: 1069 SSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAV 1128

Query: 56   KWVFRYLKGTS 24
            +W+FRYL+GTS
Sbjct: 1129 QWIFRYLRGTS 1139



 Score =  320 bits (820), Expect(2) = 0.0
 Identities = 173/349 (49%), Positives = 226/349 (64%), Gaps = 4/349 (1%)
 Frame = -1

Query: 2704 KEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRIDGGKVL 2525
            KE E   A+V D+   A++LV             +GC+   T ++DWF TY+ + GG VL
Sbjct: 268  KEEEGKAAVVTDEKSDAELLVAY-----------AGCA--QTSDQDWFATYEALQGGTVL 314

Query: 2524 LGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDGVL 2345
            +G++ PC V GIGTV++K  DG  R L++V+HIP LKR+LISL              G+L
Sbjct: 315  MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY-------------GIL 361

Query: 2344 KVFKGSMVVMK-GVRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSERGL 2177
            KV KGS+VVMK  ++S  LY L+ +T++G  A V  + LS S    LWH +LGH+SE GL
Sbjct: 362  KVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDS-LSNSDATNLWHMRLGHMSEIGL 420

Query: 2176 QELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHETL 1997
             EL K+GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+   + 
Sbjct: 421  AELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSF 480

Query: 1996 GGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEFLN 1817
            GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT +KVK LRTDNG+EF +
Sbjct: 481  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCS 540

Query: 1816 MEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
              F   C  EG+V H T   TPQQN +AERMNRT++ + RCML +A +P
Sbjct: 541  KIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLP 589



 Score =  142 bits (359), Expect = 1e-30
 Identities = 81/205 (39%), Positives = 126/205 (61%), Gaps = 7/205 (3%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLIL 3249
            K ++   +    FSLW++KM A+L    LD+AL G  K    +  DEKK   KA + + L
Sbjct: 5    KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKRDRKAISYIHL 64

Query: 3248 SLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEF 3069
             LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F  K+ D + + +H+  F
Sbjct: 65   HLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAF 124

Query: 3068 NKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQ 2889
             ++  DLE+++V+YD++D  L+LL SLP SY  F   + + R+T+TL +V  A  +KE  
Sbjct: 125  KEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRDTLTLKEVYDAFHAKEKM 184

Query: 2888 RK---NELKEQTGEGLVVQGRSDRR 2823
            +K   +E      EGLVV+GR  ++
Sbjct: 185  KKMVTSEGSNSQAEGLVVRGRQQKK 209


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  483 bits (1244), Expect(3) = 0.0
 Identities = 255/555 (45%), Positives = 348/555 (62%), Gaps = 16/555 (2%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EA  TAAYLI++ P+ AI     EE+W    P Y +LR  G +AY H  +GKL+PRA 
Sbjct: 536  WAEAAATAAYLISRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRAL 595

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYL----KENGESSTSASSDHD 1323
            K +F+ YP G KGYK+W   +   KC ISR+V+F  +  Y     KE    S +  + H 
Sbjct: 596  KGIFIGYPSGTKGYKIWLLEEQ--KCVISRNVLFHEELVYKDTIEKERVVESEAEPASHS 653

Query: 1322 ACAGIE------------VELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARD 1179
                I+            ++++D  E+                       +LA+YQL RD
Sbjct: 654  KSTLIKMKTPGNLNSGGVIQVSDEEESDESVDEEQEPEPQVELPETQTTSSLANYQLVRD 713

Query: 1178 RTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLL 999
            R RR    P R+     ++FAL+T ETL   E  SY+EA   KE K+W+ A  EE +SL+
Sbjct: 714  RERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKNSLI 773

Query: 998  KNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSP 819
            KN TW LVDKP  ++++ C+W++K+K         R+KARL+A+G+TQ+ G+D+ E+F+P
Sbjct: 774  KNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAP 833

Query: 818  VVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLK 639
            V KHTSIR+L+++V   D+ELEQMDVKTTFLHG L+E+++M QP GF+      KVCLLK
Sbjct: 834  VAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISEDGENKVCLLK 893

Query: 638  KSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIAST 459
            KSLYGL+QSPRQW  +F   M   N++RS+ D+CVY+K       ++LLLYVDDMLIA  
Sbjct: 894  KSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGK 953

Query: 458  NMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQ 279
            + SEI  ++  LS EFEMKD+G A RILG++I R+R  G L +SQ  YI  ++ RF M++
Sbjct: 954  SKSEINKVEQ-LSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAE 1012

Query: 278  AKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVS 99
            AK  ++P+  HFKL++      DDE  D   VPYASA+GSIMY+M+ T+PDLAY   +VS
Sbjct: 1013 AKVTRSPIGAHFKLAAV---RDDDECIDNNDVPYASAVGSIMYAMIGTRPDLAYVICLVS 1069

Query: 98   RFMANPGRGHWEAVK 54
            R+MA PG  HWEAVK
Sbjct: 1070 RYMARPGNIHWEAVK 1084



 Score =  305 bits (782), Expect(3) = 0.0
 Identities = 148/346 (42%), Positives = 221/346 (63%), Gaps = 1/346 (0%)
 Frame = -1

Query: 2722 RKNEKDKEVEQVNAIVEDDYESADVLVVATDKCDKQWILDSGCSFHMTPNKDWFETYKRI 2543
            RK + + E      ++ +    ++ L V        W+LDSGC+ HM+  KDWF  +++ 
Sbjct: 182  RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARKDWFCNFRKD 241

Query: 2542 DGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYK 2363
             G  +LLG++      G G++++ TH GT  +L  V+++P+L+RNLIS G LD  GY ++
Sbjct: 242  GGTTILLGDDHSVKSQGQGSIKIDTHGGTITVLENVKYVPELRRNLISTGTLDKRGYKHE 301

Query: 2362 GGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSKSQLWHRKLGHVSER 2183
            GGDG ++ FK     ++G   NGLY L  +T++    +   +K  K++LWH +LGH+   
Sbjct: 302  GGDGKVRYFKNQKTALRGEIVNGLYILDGNTILSETCVAEGSK-GKTELWHSRLGHMGLN 360

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSR-H 2006
             ++ L  +GL+  +++ +L+FCENCV GKA +V FN   + +   LSYVH DLWG +   
Sbjct: 361  NMKVLAGKGLVSKEEIRELDFCENCVMGKAKKVSFNMGKHNSEYVLSYVHADLWGSTNVT 420

Query: 2005 ETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLE 1826
             +L G +YF+SIIDD ++KVW+Y  ++KDE F +F   K++VE Q  KKVK LRTDNGLE
Sbjct: 421  PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNKKVKCLRTDNGLE 480

Query: 1825 FLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1688
            F N++FD  C   G+ RH T   TPQQNG+A+RMNRT++E+VRCML
Sbjct: 481  FCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCML 526



 Score = 83.6 bits (205), Expect(3) = 0.0
 Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
 Frame = -3

Query: 3209 KTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEFNKLYLDLENIQVE 3030
            K++AE+W  L   YM  +L N +Y++ KF++FKM D K +  +++EF K+  +L ++++ 
Sbjct: 10   KSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDSKSINENVNEFLKIVAELSSLEIN 69

Query: 3029 YDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSS--KELQRKNELKEQTGE 2856
              +E +A++ L+ L   Y      LK+G + ++L DV+ +  S  +EL  + E  + T  
Sbjct: 70   VVEEVRAILFLNGLSSRYSQLKHTLKYGNKALSLQDVISSARSLERELDEQKETDKNTST 129

Query: 2855 GLVV------QGRSDRREFXXXXXXXXXXXXXXXXXSYFCHEEGHIRR 2730
             L        Q R+  +                    ++C +EGH+++
Sbjct: 130  VLYTNERGRPQTRNQNQNKEGQGRGISKSNSNAKLTCWYCKKEGHVKK 177


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  455 bits (1171), Expect(2) = 0.0
 Identities = 250/549 (45%), Positives = 325/549 (59%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+TA YLIN+ P  AI  KT  ++W+G P +Y +L++ GC AYAH   GKLEPR  
Sbjct: 606  WAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTI 665

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ YP GVKGYKLWC      K  ISR VVF  +   L +   ++    S   A   
Sbjct: 666  KCIFLGYPSGVKGYKLWCPET--KKVVISRYVVFH-ESVMLHDKPSTNIPVESQEKASVQ 722

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRYGYAD 1131
            I++ L                             +L +  L +   +           A+
Sbjct: 723  IQILLL--------------------------FSSLQNVLLQKISPKEILNLLKDIEEAN 756

Query: 1130 LISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQRL 951
            ++++AL  AE LEKN                                TWELV  P   + 
Sbjct: 757  IVAYALSVAEELEKNH-------------------------------TWELVKLPKENKP 785

Query: 950  VSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALVTQ 771
            + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN++FSPVVKH+SIR LL++V  
Sbjct: 786  IRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAM 845

Query: 770  FDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWYLK 591
             D ELEQMDVKT FLHG L+E I+M QP+GFV  G    VC LKKSLYGL+QSPRQWY +
Sbjct: 846  HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 905

Query: 590  FDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSKEF 411
            FD  M    + RS++DSCVY+K +DG   ++LLLYVDDMLIA+ + SEI  LK  LS EF
Sbjct: 906  FDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEF 964

Query: 410  EMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKLSS 231
            EMKDLG AK+ILGMEI R R+  +L++SQ  YI K+L RF M  AK    P+  H     
Sbjct: 965  EMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAK----PIYVH----- 1015

Query: 230  ALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAVKW 51
                         I VPY+SA+GS+MY+M+C++PDL++A SVVSR+M NPG+ HW+AV+W
Sbjct: 1016 -----------SQIYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQW 1064

Query: 50   VFRYLKGTS 24
            +FRYL GTS
Sbjct: 1065 IFRYLHGTS 1073



 Score =  380 bits (976), Expect(2) = 0.0
 Identities = 191/351 (54%), Positives = 247/351 (70%), Gaps = 6/351 (1%)
 Frame = -1

Query: 2704 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 2531
            KE E   A+V D+   A++LV      +   QWILD+ C++HM PN+DWF TY+ + GG 
Sbjct: 253  KEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGT 312

Query: 2530 VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 2351
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y GGDG
Sbjct: 313  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDG 372

Query: 2350 VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 2183
            +LKV KGS+VVMK  ++S  LY LQ +T++G  A V+ + LS S    LWH +LGH+SE 
Sbjct: 373  ILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDS-LSNSDATNLWHMRLGHMSEI 431

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 2003
            GL EL  +GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 432  GLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 491

Query: 2002 TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 1823
            + GG RY ++I++D S+KVW Y  K K +AF+ FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 492  SFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEF 551

Query: 1822 LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
             +  F   C  EG++RH TV  TPQQNG+AERMNRT++ + RCML +A +P
Sbjct: 552  CSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 602



 Score =  125 bits (314), Expect = 2e-25
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 7/205 (3%)
 Frame = -3

Query: 3416 KQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEKK---KAYNTLIL 3249
            K ++   +    FSLW++KM A+L    LD+A  G  K    +  DEKK   KA + + L
Sbjct: 5    KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAFSGFDKRTQDWSNDEKKMDRKAMSYIHL 64

Query: 3248 SLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMPDGKDLQNHIDEF 3069
             LS+ IL+EV K +T+A +WLKLE + MTK L+N              DG  + +H+  F
Sbjct: 65   HLSNNILQEVLKEETAAGLWLKLEQICMTKDLTN--------------DGS-VMDHLSVF 109

Query: 3068 NKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLDDVVGALSSKELQ 2889
             ++  DLE+++V+YD+ED  L+LL SLP SY  F D + + R+T+TL +V  AL +KE  
Sbjct: 110  KEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKM 169

Query: 2888 RK---NELKEQTGEGLVVQGRSDRR 2823
            +K   +E      EGLVVQG    +
Sbjct: 170  KKMVPSEGSNSQAEGLVVQGSQQEK 194


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  455 bits (1171), Expect(2) = 0.0
 Identities = 250/549 (45%), Positives = 325/549 (59%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+TA YLIN+ P  AI  KT  ++W+G P +Y +L++ GC AYAH   GKLEPR  
Sbjct: 438  WAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTI 497

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ YP GVKGYKLWC      K  ISR VVF  +   L +   ++    S   A   
Sbjct: 498  KCIFLGYPSGVKGYKLWCPET--KKVVISRYVVFH-ESVMLHDKPSTNIPVESQEKASVQ 554

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRYGYAD 1131
            I++ L                             +L +  L +   +           A+
Sbjct: 555  IQILLL--------------------------FSSLQNVLLQKISPKEILNLLKDIEEAN 588

Query: 1130 LISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQRL 951
            ++++AL  AE LEKN                                TWELV  P   + 
Sbjct: 589  IVAYALSVAEELEKNH-------------------------------TWELVKLPKENKP 617

Query: 950  VSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALVTQ 771
            + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN++FSPVVKH+SIR LL++V  
Sbjct: 618  IRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAM 677

Query: 770  FDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWYLK 591
             D ELEQMDVKT FLHG L+E I+M QP+GFV  G    VC LKKSLYGL+QSPRQWY +
Sbjct: 678  HDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 737

Query: 590  FDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSKEF 411
            FD  M    + RS++DSCVY+K +DG   ++LLLYVDDMLIA+ + SEI  LK  LS EF
Sbjct: 738  FDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEF 796

Query: 410  EMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKLSS 231
            EMKDLG AK+ILGMEI R R+  +L++SQ  YI K+L RF M  AK    P+  H     
Sbjct: 797  EMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAK----PIYVH----- 847

Query: 230  ALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAASVVSRFMANPGRGHWEAVKW 51
                         I VPY+SA+GS+MY+M+C++PDL++A SVVSR+M NPG+ HW+AV+W
Sbjct: 848  -----------SQIYVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQW 896

Query: 50   VFRYLKGTS 24
            +FRYL GTS
Sbjct: 897  IFRYLHGTS 905



 Score =  380 bits (976), Expect(2) = 0.0
 Identities = 191/351 (54%), Positives = 247/351 (70%), Gaps = 6/351 (1%)
 Frame = -1

Query: 2704 KEVEQVNAIVEDDYESADVLVVATD--KCDKQWILDSGCSFHMTPNKDWFETYKRIDGGK 2531
            KE E   A+V D+   A++LV      +   QWILD+ C++HM PN+DWF TY+ + GG 
Sbjct: 85   KEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGT 144

Query: 2530 VLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKGGDG 2351
            VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y GGDG
Sbjct: 145  VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDG 204

Query: 2350 VLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHVSER 2183
            +LKV KGS+VVMK  ++S  LY LQ +T++G  A V+ + LS S    LWH +LGH+SE 
Sbjct: 205  ILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDS-LSNSDATNLWHMRLGHMSEI 263

Query: 2182 GLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPSRHE 2003
            GL EL  +GLL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+R  
Sbjct: 264  GLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKT 323

Query: 2002 TLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNGLEF 1823
            + GG RY ++I++D S+KVW Y  K K +AF+ FK WK MVE QT +KVK LRTDNG+EF
Sbjct: 324  SFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEF 383

Query: 1822 LNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
             +  F   C  EG++RH TV  TPQQNG+AERMNRT++ + RCML +A +P
Sbjct: 384  CSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 434


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  441 bits (1134), Expect(2) = 0.0
 Identities = 238/511 (46%), Positives = 317/511 (62%), Gaps = 2/511 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+T  YLIN+ PS A   KT  E+W+G P +Y +LR+ GC AYAH   GKLEPRA 
Sbjct: 656  WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 715

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ YP GVKGYKLWC      K  ISR+VVF  +   L +   ++    S   A   
Sbjct: 716  KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 772

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1134
            +E  ++     + +                   +  +   +A+D+ +R    P RY   A
Sbjct: 773  VEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEA 832

Query: 1133 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 957
            +++++AL  AE +E N E ++Y EA    +   W  AM +EM+SL KN TWE V  P  +
Sbjct: 833  NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892

Query: 956  RLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALV 777
            + + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN+VFSP++KH+SIR LL +V
Sbjct: 893  KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIV 952

Query: 776  TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 597
               D ELEQMDVKT FLHG L+E I+M QP+GFV  G    VC LKKSLYGL+QSPRQWY
Sbjct: 953  AMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWY 1012

Query: 596  LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 417
             +FD  M    + RS++DSCVY+K +DG   ++LLLYVDDMLIA+ + SEI  LK  LS 
Sbjct: 1013 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1071

Query: 416  EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAKAVQTPLACHFKL 237
            EF MKDLG AK+ILGMEI R R+ G+L++SQ  YI K+L RF M   K +          
Sbjct: 1072 EFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPI---------- 1121

Query: 236  SSALSPSTDDEKADMIQVPYASAIGSIMYSM 144
               L P +D +   M +VPY+SA+GS+MY+M
Sbjct: 1122 IFRLCPQSDYDIEYMSRVPYSSAVGSLMYAM 1152



 Score =  370 bits (950), Expect(2) = 0.0
 Identities = 190/354 (53%), Positives = 244/354 (68%), Gaps = 7/354 (1%)
 Frame = -1

Query: 2710 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2540
            K K+ E+  A V  D +S   L+VA   C +   QWILD+  ++HM PN+DWF TY+ + 
Sbjct: 300  KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359

Query: 2539 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2360
            GG VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y G
Sbjct: 360  GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419

Query: 2359 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2192
            GDG+LKV KGS+VVMK  ++S  LY L+ +T++G  A V+ + LS S    LWH +LGH+
Sbjct: 420  GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 478

Query: 2191 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2012
            SE GL EL K+ LL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+
Sbjct: 479  SEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538

Query: 2011 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 1832
               + GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT KKVK LRTDNG
Sbjct: 539  CKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598

Query: 1831 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
            +EF +  F   C  EG+V H TV  TPQQNG+AERMN  ++ + RCML +A++P
Sbjct: 599  MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLP 652



 Score =  144 bits (364), Expect = 3e-31
 Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
 Frame = -3

Query: 3452 ARGKVCMAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEK 3276
            A G + MA+   K ++   +    FSLW++KM A+L    LD+AL G  K    +  DEK
Sbjct: 30   AEGLIPMASL--KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK 87

Query: 3275 KK---AYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMP 3105
            KK   A + + L LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F  K+ 
Sbjct: 88   KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQ 147

Query: 3104 DGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLD 2925
            D   + +H+  F ++  DLE+I+V+YD+ED  L+LL SLP SY  F D + +  +T+ L 
Sbjct: 148  DDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK 207

Query: 2924 DVVGALSSKELQRK---NELKEQTGEGLVVQGRSDRR 2823
            +V  AL +KE  +K   +E      EGLVV+GR   +
Sbjct: 208  EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK 244


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  422 bits (1085), Expect(2) = 0.0
 Identities = 224/468 (47%), Positives = 295/468 (63%), Gaps = 2/468 (0%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W EAV+T  YLIN+ PS A   KT  E+W+G P +Y +LR+ GC AYAH   GKLEPRA 
Sbjct: 656  WAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAI 715

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGESSTSASSDHDACAG 1311
            KC+F+ YP GVKGYKLWC      K  ISR+VVF  +   L +   ++    S   A   
Sbjct: 716  KCIFLGYPSGVKGYKLWCPET--KKVVISRNVVFH-ESVILHDKPSTNVPVESQEKASVQ 772

Query: 1310 IEVELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQLARDRTRRTRVAPTRY-GYA 1134
            +E  ++     + +                   +  +   +A+D+ +R    P RY   A
Sbjct: 773  VEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEA 832

Query: 1133 DLISFALLTAETLEKN-ELASYEEACKCKERKEWRQAMQEEMDSLLKNKTWELVDKPVGQ 957
            +++++AL  AE +E N E ++Y EA    +   W  AM +EM+SL KN TWE V  P  +
Sbjct: 833  NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892

Query: 956  RLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNEVFSPVVKHTSIRVLLALV 777
            + + CKWI+K KE  S   + R+KARL+A+G++Q  GIDFN+VFSP++KH+SIR LL +V
Sbjct: 893  KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIV 952

Query: 776  TQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKVCLLKKSLYGLRQSPRQWY 597
               D ELEQMDVKT FLHG L+E I+M QP+GFV  G    VC LKKSLYGL+QSPRQWY
Sbjct: 953  AMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWY 1012

Query: 596  LKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDMLIASTNMSEIRMLKTLLSK 417
             +FD  M    + RS++DSCVY+K +DG   ++LLLYVDDMLIA+ + SEI  LK  LS 
Sbjct: 1013 KRFDSFMLSQKFRRSNYDSCVYLKVVDGS-AIYLLLYVDDMLIAAKDKSEIAKLKAQLSS 1071

Query: 416  EFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRFGMSQAK 273
            EF MKDLG AK+ILGMEI R R+ G+L++SQ  YI K+L RF M   K
Sbjct: 1072 EFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVK 1119



 Score =  370 bits (950), Expect(2) = 0.0
 Identities = 190/354 (53%), Positives = 244/354 (68%), Gaps = 7/354 (1%)
 Frame = -1

Query: 2710 KDKEVEQVNAIVEDDYESADVLVVATDKCDK---QWILDSGCSFHMTPNKDWFETYKRID 2540
            K K+ E+  A V  D +S   L+VA   C +   QWILD+  ++HM PN+DWF TY+ + 
Sbjct: 300  KGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQ 359

Query: 2539 GGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNLISLGMLDHHGYTYKG 2360
            GG VL+G++ PC V GIGTV++K  DG  R L++VRHIP LKR+LISL  LD  GY Y G
Sbjct: 360  GGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 419

Query: 2359 GDGVLKVFKGSMVVMKG-VRSNGLYTLQASTVIGIAAIVTHAKLSKSQ---LWHRKLGHV 2192
            GDG+LKV KGS+VVMK  ++S  LY L+ +T++G  A V+ + LS S    LWH +LGH+
Sbjct: 420  GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS-LSNSDATNLWHMRLGHM 478

Query: 2191 SERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETLSYVHFDLWGPS 2012
            SE GL EL K+ LL G  + KL+FCE+C+FGK  RVKFN ST+TT   L YVH DLWGP+
Sbjct: 479  SEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 538

Query: 2011 RHETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQTGKKVKKLRTDNG 1832
               + GG RY ++I+DD S+KVW Y  K K +AF  FK WK MVE QT KKVK LRTDNG
Sbjct: 539  CKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNG 598

Query: 1831 LEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCMLFSANMP 1670
            +EF +  F   C  EG+V H TV  TPQQNG+AERMN  ++ + RCML +A++P
Sbjct: 599  MEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLP 652



 Score =  144 bits (364), Expect = 3e-31
 Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
 Frame = -3

Query: 3452 ARGKVCMAATTSKQEIEKFNGSNDFSLWKMKMLALLGNLGLDEALQGEAKMPTTY*-DEK 3276
            A G + MA+   K ++   +    FSLW++KM A+L    LD+AL G  K    +  DEK
Sbjct: 30   AEGLIPMASL--KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK 87

Query: 3275 KK---AYNTLILSLSDKILREVTKMKTSAEVWLKLESLYMTKTLSNCLYLKAKFFTFKMP 3105
            KK   A + + L LS+ IL+EV K +T+A +WLKLE + MTK L++ ++LK K F  K+ 
Sbjct: 88   KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQ 147

Query: 3104 DGKDLQNHIDEFNKLYLDLENIQVEYDDEDKALVLLHSLPKSYETFVDILKHGRETITLD 2925
            D   + +H+  F ++  DLE+I+V+YD+ED  L+LL SLP SY  F D + +  +T+ L 
Sbjct: 148  DDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILK 207

Query: 2924 DVVGALSSKELQRK---NELKEQTGEGLVVQGRSDRR 2823
            +V  AL +KE  +K   +E      EGLVV+GR   +
Sbjct: 208  EVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEK 244


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  498 bits (1283), Expect(2) = 0.0
 Identities = 262/559 (46%), Positives = 353/559 (63%), Gaps = 20/559 (3%)
 Frame = -3

Query: 1670 WGEAVNTAAYLINKCPSVAIGFKTLEEIWTGIPPSYDNLRICGCVAYAHTKEGKLEPRAR 1491
            W E   TA Y+IN+ PS AI     EE+W    P Y +LR    VAY H  +GKL+PRA 
Sbjct: 309  WAEVATTAVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYVHVDQGKLKPRAI 368

Query: 1490 KCMFVSYPEGVKGYKLWCQNKHISKCFISRDVVFKVDEYYLKENGE-------------- 1353
            K +F+ YP G KGYK+W   +   KC ISR+V+F+ +  Y   N +              
Sbjct: 369  KGIFIGYPSGTKGYKVWLLEEQ--KCVISRNVIFQEEVVYKDLNDKETVVKKEDIRTQTD 426

Query: 1352 -----SSTSASSDHDACAGIE-VELADRTENQ*DYRLXXXXXXXXXXXXXXXXEALADYQ 1191
                 S T   SD      IE  E +D  + Q                      +LA+YQ
Sbjct: 427  NHLVISKTKEVSDQGGVTHIEECEESDENDEQ------EPETVNETDPTVESEGSLANYQ 480

Query: 1190 LARDRTRRTRVAPTRYGYADLISFALLTAETLEKNELASYEEACKCKERKEWRQAMQEEM 1011
            LA+DR RR    P R+     ++FAL+  E+L   E  SY+EA + KE  +W+ A  EEM
Sbjct: 481  LAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNATHEEM 540

Query: 1010 DSLLKNKTWELVDKPVGQRLVSCKWIYKLKEDGSKDGKPRFKARLMARGFTQQAGIDFNE 831
            DSL+KN TW+LVDKP  ++++ C+W++KLK         RFKARL+A+G+TQ+ G+D+ E
Sbjct: 541  DSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQE 600

Query: 830  VFSPVVKHTSIRVLLALVTQFDMELEQMDVKTTFLHGNLDEKIFMSQPKGFVKHGDAGKV 651
            +F+PVVKHTSIRVL+++V   DMELEQMDVKT FLHG+L+E+++M QP+GF+      KV
Sbjct: 601  IFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEGFITDKTKDKV 660

Query: 650  CLLKKSLYGLRQSPRQWYLKFDEVMKKNNYLRSDFDSCVYIKWIDGGVGVFLLLYVDDML 471
            CLLKKSLYGL+QSPRQW  +F   M +  ++RS  D+CVY+K ++ G  V+LLLYVDDML
Sbjct: 661  CLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHDACVYVKQVEQGF-VYLLLYVDDML 719

Query: 470  IASTNMSEIRMLKTLLSKEFEMKDLGVAKRILGMEIKRNRNKGELFISQTSYILKLLNRF 291
            IA  + +E+ M+K  LS EFEMKD+G A RILG +I R+R KG L +SQ  YI K++ RF
Sbjct: 720  IAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRDRKKGILRLSQAPYIRKIVQRF 779

Query: 290  GMSQAKAVQTPLACHFKLSSALSPSTDDEKADMIQVPYASAIGSIMYSMVCTQPDLAYAA 111
             + +A+ V+TP+  HFKL +      DDE  D  QVPY+SA+GSIMY+M+ T+PDLAYA 
Sbjct: 780  NLDEARVVRTPIGAHFKLPAV---REDDECIDTEQVPYSSAVGSIMYAMIGTRPDLAYAI 836

Query: 110  SVVSRFMANPGRGHWEAVK 54
             +VSR+M+ PG  HW+AVK
Sbjct: 837  CLVSRYMSRPGSLHWDAVK 855



 Score =  293 bits (751), Expect(2) = 0.0
 Identities = 144/300 (48%), Positives = 200/300 (66%), Gaps = 1/300 (0%)
 Frame = -1

Query: 2584 MTPNKDWFETYKRIDGGKVLLGNNKPCSVIGIGTVRLKTHDGTERLLTEVRHIPKLKRNL 2405
            MT  +DWF +++  D  K+LLG++      G G++RL TH GT  +L  V+++P L+RNL
Sbjct: 1    MTSRRDWFCSFQEKDTTKILLGDDHSVESQGQGSIRLDTHGGTITILENVKYVPNLRRNL 60

Query: 2404 ISLGMLDHHGYTYKGGDGVLKVFKGSMVVMKGVRSNGLYTLQASTVIGIAAIVTHAKLSK 2225
            IS G LD  GY ++GGDG ++ +K +   ++G  S GLY L  +TVI  + I   +K   
Sbjct: 61   ISTGTLDRLGYKHEGGDGQVRYYKNNKTALRGSLSGGLYVLDGNTVIAESCIAERSK-EL 119

Query: 2224 SQLWHRKLGHVSERGLQELQKQGLLYGDKVDKLEFCENCVFGKATRVKFNNSTYTTRETL 2045
            + LWH +LGH+    ++ L  +GL+   +   LEF E+CV GKA +V FN   + + E L
Sbjct: 120  TTLWHSRLGHMGGNNMKILAGKGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEEIL 179

Query: 2044 SYVHFDLWGPSR-HETLGGGRYFISIIDDCSQKVWVYI*KTKDEAFSKFKAWKKMVEVQT 1868
            SYVH DLWG      ++ G +YF+SIIDD S+KVW+Y  ++KDE F KF  WK++VE QT
Sbjct: 180  SYVHADLWGSQNVTPSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQT 239

Query: 1867 GKKVKKLRTDNGLEFLNMEFDELCSKEGMVRHKTVKGTPQQNGLAERMNRTLLERVRCML 1688
             K+VK LRTDNGLEF N++FD  C K G+ RHKT   TPQQNG+AERMNRT++E+VRC+L
Sbjct: 240  DKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRTVMEKVRCLL 299