BLASTX nr result
ID: Akebia27_contig00023164
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia27_contig00023164 (1063 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI16226.3| unnamed protein product [Vitis vinifera] 466 e-129 ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 466 e-129 ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao... 443 e-122 ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 421 e-115 ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 410 e-112 ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas... 391 e-106 ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 390 e-106 ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 389 e-105 ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 387 e-105 ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part... 376 e-102 ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 375 e-101 ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 374 e-101 ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 371 e-100 gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 370 e-100 ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 368 3e-99 ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 364 3e-98 ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 364 3e-98 dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 361 3e-97 ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 361 3e-97 ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 359 1e-96 >emb|CBI16226.3| unnamed protein product [Vitis vinifera] Length = 1819 Score = 466 bits (1199), Expect = e-129 Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%) Frame = +1 Query: 85 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264 ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60 Query: 265 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444 D MGPANK+G CATC G+F CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L Sbjct: 61 DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120 Query: 445 LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600 L EK +DYLKKMRS KME+L+K+ L K+IV+KC C RCGY+NG VKKA Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180 Query: 601 SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780 S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL Sbjct: 181 SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240 Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957 L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL II NASL Q+LQ T Sbjct: 241 NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300 Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+ Sbjct: 301 STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335 >ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis vinifera] Length = 1383 Score = 466 bits (1199), Expect = e-129 Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%) Frame = +1 Query: 85 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264 ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60 Query: 265 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444 D MGPANK+G CATC G+F CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L Sbjct: 61 DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120 Query: 445 LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600 L EK +DYLKKMRS KME+L+K+ L K+IV+KC C RCGY+NG VKKA Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180 Query: 601 SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780 S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL Sbjct: 181 SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240 Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957 L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL II NASL Q+LQ T Sbjct: 241 NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300 Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+ Sbjct: 301 STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335 >ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao] gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] Length = 1395 Score = 443 bits (1140), Expect = e-122 Identities = 227/331 (68%), Positives = 264/331 (79%), Gaps = 8/331 (2%) Frame = +1 Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273 Q +FTK PYIEDVGPRKIKSI+FSM S +EI KAAEVQV++ +YD +PIE GLLD Sbjct: 2 QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61 Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453 MGPANKSG CATCHG+FA CPGH+GYL+L LPV+NVGY S+I+DILK ICKSC+RI+L E Sbjct: 62 MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121 Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLG 612 KL +DYLK+MRS K+++L+K + K IVKKC C RCGYVNG VKKA +MLG Sbjct: 122 KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181 Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLW 789 IIHDRSKI D + EE +SAISH KESKASF+V ++LNPV+VLSLF+RM D DCELLYL Sbjct: 182 IIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLS 241 Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969 DRPEKLIIT+IAVPPI IRPSV MD +SNE+DIT RL II NASLRQ+L T K Sbjct: 242 DRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFK 301 Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 CL WE+LQ+EVAQYINSDVRGVP SMQ +K Sbjct: 302 CLGGWEMLQVEVAQYINSDVRGVPFSMQVSK 332 >ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X2 [Citrus sinensis] Length = 1404 Score = 421 bits (1081), Expect = e-115 Identities = 216/340 (63%), Positives = 262/340 (77%), Gaps = 7/340 (2%) Frame = +1 Query: 64 LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243 ++Q + + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60 Query: 244 PIENGLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSIC 423 PIE GLLD MGPANKS CATCHG F+ CPGH+GYL L LPV+NVGY S+I+DILK IC Sbjct: 61 PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120 Query: 424 KSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP------TCHRCGYVNGG 585 K C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC C RCGY+NG Sbjct: 121 KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180 Query: 586 VKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLD 762 VKKA ++LGIIHDRSK+ + + +E SAI+H KESKA+ +V ++LNPV VL LF+RM D Sbjct: 181 VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTD 239 Query: 763 EDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQD 942 DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD +SNE+DIT RL II TNASL+Q+ Sbjct: 240 TDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 299 Query: 943 LQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 L K LA WE LQ+EVAQYINSDVRGVP SMQ A+ Sbjct: 300 LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 339 >ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina] gi|557526635|gb|ESR37941.1| hypothetical protein CICLE_v10027681mg [Citrus clementina] Length = 1397 Score = 410 bits (1055), Expect = e-112 Identities = 216/355 (60%), Positives = 261/355 (73%), Gaps = 22/355 (6%) Frame = +1 Query: 64 LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243 ++Q + + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60 Query: 244 PIENGLLDSHM---------------GPANKSGICATCHGSFAACPGHFGYLNLVLPVFN 378 PIE GLLD M GPANKS CATCHG F+ CPGH+GYL L LPV+N Sbjct: 61 PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120 Query: 379 VGYFSSIIDILKSICKSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT- 555 VGY S+I+DILK ICK C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC Sbjct: 121 VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180 Query: 556 -----CHRCGYVNGGVKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HL 717 C RCGY+NG VKKA ++LGIIHDRSK+ + +E SAI+H KESKA+ +V ++ Sbjct: 181 SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYI 239 Query: 718 LNPVRVLSLFRRMLDEDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITS 897 LNPV VL LF+RM D DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD +SNE+DIT Sbjct: 240 LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITE 299 Query: 898 RLSTIIATNASLRQDLQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 RL II TNASL+Q+L K LA WE LQ+EVAQYINSDVRGVP SMQ A+ Sbjct: 300 RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 354 >ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris] gi|561005141|gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris] Length = 1392 Score = 391 bits (1005), Expect = e-106 Identities = 201/326 (61%), Positives = 244/326 (74%), Gaps = 4/326 (1%) Frame = +1 Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276 + FTKEP++ED GPRKIK++KFSM S +EI K EVQVW+G +YDS +KPI GLLD M Sbjct: 9 ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68 Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456 GPANKS CATCHG+F CPGH+GYLNL LPVFNVGY SI++ILK ICK CARILL E Sbjct: 69 GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128 Query: 457 LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627 R+ +LKKMRSSK L K K +I+K C C RCGY+NG VKK + L I+HD Sbjct: 129 TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDC 188 Query: 628 SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804 SK + EE +S +S IK+SKA+ +V + +LNP +VLSLFR+MLDEDCELLY+ +RPEK Sbjct: 189 SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248 Query: 805 LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984 LIIT+I VPPI+IRPSV MD SNE+DIT RL II NA LRQ+LQ ++ +SK L W Sbjct: 249 LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308 Query: 985 ELLQIEVAQYINSDVRGVPSSMQPAK 1062 E+LQ EVAQ+INS+VRG+P MQ K Sbjct: 309 EILQNEVAQFINSEVRGIPFYMQSTK 334 >ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis sativus] Length = 1400 Score = 390 bits (1002), Expect = e-106 Identities = 198/331 (59%), Positives = 252/331 (76%), Gaps = 9/331 (2%) Frame = +1 Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276 L FTK+PYIEDVGPRKIKS++F+ FSGAEI K AEVQV++G +YD+TRKPI+ GLLD M Sbjct: 9 LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68 Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456 GPANK CATCH +F CPGH+GY+NL LPVFNVGYF++I++ILK ICKSC+RILL EK Sbjct: 69 GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128 Query: 457 LRRDYLKKMRSSKMESLQKSGLAKQIVKKC--------KPTCHRCGYVNGGVKKAGSMLG 612 L +D+L+KMR+ K+E+L+K L K+I+KKC C RCGY+NG VKKA SMLG Sbjct: 129 LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLG 188 Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLW 789 I+H R++ D +S ++ +A ++V + +LNP RVL LF+RM DEDCELL+L Sbjct: 189 ILHYRARSKDA------GVVS--EDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240 Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969 +RPEKLIIT++ VPPI+IRPSV MD +SNE+DIT RL II NAS+ Q+L + +K Sbjct: 241 NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300 Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 CL W++LQ EVAQ INSDVRG+P SMQ +K Sbjct: 301 CLESWDMLQSEVAQLINSDVRGIPFSMQVSK 331 >ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine max] Length = 1391 Score = 389 bits (998), Expect = e-105 Identities = 198/326 (60%), Positives = 245/326 (75%), Gaps = 4/326 (1%) Frame = +1 Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276 + FTKEP++ED GPRKIK++KFS S +EI K AEVQVW+G +YDS +KPI GLLD M Sbjct: 9 ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRM 68 Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456 GPANKS +CATC G+F CPGH+GYLNL LPVFNVGY S+I++ILK ICK CARILL E Sbjct: 69 GPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDED 128 Query: 457 LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627 R+ +LKKMRSSK L K K +++K C C RCGY+NG VKK + L IIHD Sbjct: 129 TRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDC 188 Query: 628 SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804 SK + EE SA+S +K+S+A+ +V + +LNP +VLSLF+RMLDEDCELLY+ +RPEK Sbjct: 189 SKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEK 248 Query: 805 LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984 LI+T++ VPPI+IRPSV MD SNE+DIT RL II NA LRQ+LQ + +SK L W Sbjct: 249 LIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGW 308 Query: 985 ELLQIEVAQYINSDVRGVPSSMQPAK 1062 ++LQ EVAQ+INSDVRG+P MQP K Sbjct: 309 DILQNEVAQFINSDVRGIPFYMQPTK 334 >ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa] gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase family protein [Populus trichocarpa] Length = 1394 Score = 387 bits (994), Expect = e-105 Identities = 201/326 (61%), Positives = 245/326 (75%), Gaps = 9/326 (2%) Frame = +1 Query: 103 FTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHMGP 282 +TK+PYIEDVGPR+IKSI+FS SG++I KA+E QV G +YD+ +K I GLLD+ MG Sbjct: 10 YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69 Query: 283 ANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEKLR 462 NK G C TC GSF CPGHFGYLNLVLPV+NVGY S+I+DILK ICKSC+R+L+ EKLR Sbjct: 70 PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129 Query: 463 RDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLGIIH 621 + YLK+MR+ + E L+K+ L K+IVKKC C RCGY+NG VKKAGS++GIIH Sbjct: 130 KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189 Query: 622 DRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLWDRP 798 DRSK++DG EECKSAI H +E++A + ++LNPVRVLSLF+RM++EDCELLYL RP Sbjct: 190 DRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRP 249 Query: 799 EKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS-KCL 975 EKLIIT IAVPPISIRPSVF + +SNE+DIT RL II NA LR +L T K L Sbjct: 250 EKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYL 309 Query: 976 ADWELLQIEVAQYINSDVRGVPSSMQ 1053 W+ LQ V YINSDVR +P MQ Sbjct: 310 IGWDELQAVVTLYINSDVR-IPLDMQ 334 >ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica] gi|462403787|gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica] Length = 867 Score = 376 bits (966), Expect = e-102 Identities = 195/332 (58%), Positives = 244/332 (73%), Gaps = 10/332 (3%) Frame = +1 Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276 L FTK+P+IED G RKI+ +FS S EI AE Q+++ +YD +KPIE GLLD + Sbjct: 12 LIFTKQPFIEDEGHRKIEKWQFSAMSDTEIVNMAETQIYKCNYYDPNQKPIEGGLLDPRL 71 Query: 277 GPANKS-GICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453 GPANKS G CATC CPGHFG+L L LPV NVGY S+++DILK ICK C+ ILL E Sbjct: 72 GPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTVVDILKCICKLCSGILLEE 131 Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKC-------KPT-CHRCGYVNGGVKKAGSML 609 +R D+LKKMRS KME L+K+ L K+IVKKC +P C +CG++NG VKKA +L Sbjct: 132 GMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFINGSVKKAVGVL 191 Query: 610 GIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDEDCELLYL 786 GIIHDRSK+ +G ++ ++ +SH KESKASF+V H+LNP R+ SLF+RM+DEDCELL L Sbjct: 192 GIIHDRSKL-NGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRMVDEDCELLNL 250 Query: 787 WDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS 966 +RP+ LII +IAVPPI+IRPSV +D SNE+DIT RL II +NA LR+DL Sbjct: 251 SNRPQNLIIKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILRRDLLEAKSAP 310 Query: 967 KCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 KCLA W++LQ+EVAQYINSD+RGVP SMQ AK Sbjct: 311 KCLASWDILQVEVAQYINSDIRGVPFSMQTAK 342 >ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza brachyantha] Length = 1389 Score = 375 bits (962), Expect = e-101 Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 MA +++L+ TKEP+IED G R+IKSI+FSMFSG E+R++AEVQVW Y+ +P+ N Sbjct: 1 MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICK C+ Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612 R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG KK + L Sbjct: 121 RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180 Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792 I+HD SK +DG+ EE K A+SH KE K SF VH+L+P VLSLF+RM DEDCELL L D Sbjct: 181 ILHDCSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239 Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969 RPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ K Sbjct: 240 RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299 Query: 970 CLADWELLQIEVAQYINSDVRGVPSS 1047 C W+ LQ++V +YINSD +P S Sbjct: 300 CFDCWQHLQLQVVEYINSDAPSLPES 325 >ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Brachypodium distachyon] Length = 1392 Score = 374 bits (960), Expect = e-101 Identities = 193/329 (58%), Positives = 240/329 (72%), Gaps = 2/329 (0%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 MA +++L+ TKEP++EDVG R+IKS++FSMFSG EIR++AE QVW Y + KP+ N Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD MG ANK G CATCHGS+ CPGHFGYL LVLPVFNVG+F++I+D+LKSICK C+ Sbjct: 61 GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612 RILL EK +R++LKKMR+ ++E L K+ L K++ KCK C CGY+NG KK L Sbjct: 121 RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180 Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792 I+HD SK +DG+ EE +SA+SH KE K S VH L+P VLSLF+RM DEDCELL L D Sbjct: 181 IVHDCSKTLDGSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGD 239 Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969 RPEKLIIT+IAVPP+ IRPSVF+ GR SNED IT L I+ TN+ L+ LQ P K Sbjct: 240 RPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMK 299 Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQP 1056 C W+LLQ++V +YINSD PS P Sbjct: 300 CFDCWQLLQLQVVEYINSD---APSLTDP 325 >ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group] gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group] gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group] gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group] gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group] gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group] gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group] Length = 1383 Score = 371 bits (953), Expect = e-100 Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 MA +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW Y+ KP+ N Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+ Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612 R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG KK + L Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180 Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792 I+HD SK +DG+ EE + A+SH KE K S V +L+P VLSLF+RM DEDCELL L D Sbjct: 181 ILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239 Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969 RPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ K Sbjct: 240 RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299 Query: 970 CLADWELLQIEVAQYINSDVRGVPSS 1047 C W+ LQ++V +YINSD +P S Sbjct: 300 CFDCWQHLQLQVVEYINSDAPSLPES 325 >gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group] Length = 1321 Score = 370 bits (949), Expect = e-100 Identities = 189/327 (57%), Positives = 241/327 (73%), Gaps = 3/327 (0%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 MA +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW Y+ KP+ N Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+ Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAG-SML 609 R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG V K G + L Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGSVAKKGRAGL 180 Query: 610 GIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLW 789 I+HD SK +DG+ EE + A+SH KE K S V +L+P VLSLF+RM DEDCELL L Sbjct: 181 IILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLG 239 Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTS 966 DRPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ Sbjct: 240 DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 299 Query: 967 KCLADWELLQIEVAQYINSDVRGVPSS 1047 KC W+ LQ++V +YINSD +P S Sbjct: 300 KCFDCWQHLQLQVVEYINSDAPSLPES 326 >ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum lycopersicum] Length = 1390 Score = 368 bits (944), Expect = 3e-99 Identities = 196/335 (58%), Positives = 244/335 (72%), Gaps = 10/335 (2%) Frame = +1 Query: 88 QDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLD 267 Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K AEV+V+ G +Y+ST+KPI+NGLLD Sbjct: 5 QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64 Query: 268 SHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILL 447 MGP NKSG C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+ ILL Sbjct: 65 PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124 Query: 448 PEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVKKAGS 603 +K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VKK Sbjct: 125 DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182 Query: 604 MLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780 L I H++ ++I+D E AIS +E +AS V ++P V SLF+ M DEDCELL Sbjct: 183 QLKITHEQGNRILD----EINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238 Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957 YL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++ ++ Sbjct: 239 YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298 Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 P K L W LQ+EVAQYINSDVRGVP MQP + Sbjct: 299 PV-KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPR 332 >ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X2 [Solanum tuberosum] Length = 1243 Score = 364 bits (935), Expect = 3e-98 Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 M +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD MGP NK+G C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+ Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591 ILL +K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VK Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180 Query: 592 KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768 K L I H++ ++I+D E AIS +E +AS V L+P V SLF+ M DED Sbjct: 181 KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234 Query: 769 CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945 CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++ Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294 Query: 946 QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053 ++P K L W LQ+EVAQYINSDVRGVP MQ Sbjct: 295 SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329 >ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform X1 [Solanum tuberosum] Length = 1394 Score = 364 bits (935), Expect = 3e-98 Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%) Frame = +1 Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255 M +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60 Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435 GLLD MGP NK+G C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+ Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120 Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591 ILL +K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VK Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180 Query: 592 KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768 K L I H++ ++I+D E AIS +E +AS V L+P V SLF+ M DED Sbjct: 181 KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234 Query: 769 CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945 CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++ Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294 Query: 946 QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053 ++P K L W LQ+EVAQYINSDVRGVP MQ Sbjct: 295 SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329 >dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana] Length = 1383 Score = 361 bits (926), Expect = 3e-97 Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%) Frame = +1 Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273 +++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW G YD + KP ENGLLD Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65 Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453 MGP NK IC TC G+F CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E Sbjct: 66 MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125 Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606 KL D+L+KMR+ +ME L+K+ LAK +VKKC TC +CGY+NG VKK + Sbjct: 126 KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185 Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783 +GI HDRSKI G +ECKSAISH K+S A+ + + ++L+P VL LF+RM D+DCELLY Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245 Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963 + RPE LIIT + VPP+SIRPSV + +SNE+D+T+RL II NASL + L + Sbjct: 246 IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305 Query: 964 SKCLADWELLQIEVAQYINSDVRG 1035 K + W+ +QIEVA+YINS+VRG Sbjct: 306 PKNMQVWDTVQIEVARYINSEVRG 329 >ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana] gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1 [Arabidopsis thaliana] Length = 1376 Score = 361 bits (926), Expect = 3e-97 Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%) Frame = +1 Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273 +++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW G YD + KP ENGLLD Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65 Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453 MGP NK IC TC G+F CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E Sbjct: 66 MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125 Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606 KL D+L+KMR+ +ME L+K+ LAK +VKKC TC +CGY+NG VKK + Sbjct: 126 KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185 Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783 +GI HDRSKI G +ECKSAISH K+S A+ + + ++L+P VL LF+RM D+DCELLY Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245 Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963 + RPE LIIT + VPP+SIRPSV + +SNE+D+T+RL II NASL + L + Sbjct: 246 IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305 Query: 964 SKCLADWELLQIEVAQYINSDVRG 1035 K + W+ +QIEVA+YINS+VRG Sbjct: 306 PKNMQVWDTVQIEVARYINSEVRG 329 >ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata] Length = 1376 Score = 359 bits (921), Expect = 1e-96 Identities = 185/333 (55%), Positives = 236/333 (70%), Gaps = 10/333 (3%) Frame = +1 Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273 +++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW+ +Y++ KP ENGLLD+ Sbjct: 6 EIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDAR 65 Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453 MGP NK IC TC G+F CPGH+GYL L LPV+NVG+F+ I+DILK ICK C+ +LL E Sbjct: 66 MGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDE 125 Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606 KL D+L+KMR+ KME L+K+ LAK +VKKC TC +CGY+NG VKK + Sbjct: 126 KLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQMG 185 Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783 +GI HDRSKI G +ECKSAISH KES + + + ++L+P VL LF+ M D+DCELLY Sbjct: 186 IGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLY 245 Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963 + RPE LI T + VPP+SIRPSV + RSNE+DIT RL II NA L + L + Sbjct: 246 IAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTS 305 Query: 964 SKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062 K + W+ +Q EVA+YINS+VRGV + QP K Sbjct: 306 PKNMQVWDTVQSEVAKYINSEVRGVQN--QPEK 336