BLASTX nr result
ID: Akebia27_contig00023164
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00023164
(1063 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 466 e-129
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 466 e-129
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao... 443 e-122
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 421 e-115
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 410 e-112
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas... 391 e-106
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 390 e-106
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 389 e-105
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 387 e-105
ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part... 376 e-102
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 375 e-101
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 374 e-101
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 371 e-100
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 370 e-100
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 368 3e-99
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 364 3e-98
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 364 3e-98
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 361 3e-97
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 361 3e-97
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 359 1e-96
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 466 bits (1199), Expect = e-129
Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%)
Frame = +1
Query: 85 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264
++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60
Query: 265 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444
D MGPANK+G CATC G+F CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61 DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120
Query: 445 LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600
L EK +DYLKKMRS KME+L+K+ L K+IV+KC C RCGY+NG VKKA
Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180
Query: 601 SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181 SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240
Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL II NASL Q+LQ T
Sbjct: 241 NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300
Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+
Sbjct: 301 STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 466 bits (1199), Expect = e-129
Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%)
Frame = +1
Query: 85 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264
++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60
Query: 265 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444
D MGPANK+G CATC G+F CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61 DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120
Query: 445 LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600
L EK +DYLKKMRS KME+L+K+ L K+IV+KC C RCGY+NG VKKA
Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180
Query: 601 SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181 SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240
Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL II NASL Q+LQ T
Sbjct: 241 NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300
Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+
Sbjct: 301 STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335
>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
[Theobroma cacao]
Length = 1395
Score = 443 bits (1140), Expect = e-122
Identities = 227/331 (68%), Positives = 264/331 (79%), Gaps = 8/331 (2%)
Frame = +1
Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
Q +FTK PYIEDVGPRKIKSI+FSM S +EI KAAEVQV++ +YD +PIE GLLD
Sbjct: 2 QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61
Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
MGPANKSG CATCHG+FA CPGH+GYL+L LPV+NVGY S+I+DILK ICKSC+RI+L E
Sbjct: 62 MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121
Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLG 612
KL +DYLK+MRS K+++L+K + K IVKKC C RCGYVNG VKKA +MLG
Sbjct: 122 KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181
Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLW 789
IIHDRSKI D + EE +SAISH KESKASF+V ++LNPV+VLSLF+RM D DCELLYL
Sbjct: 182 IIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLS 241
Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
DRPEKLIIT+IAVPPI IRPSV MD +SNE+DIT RL II NASLRQ+L T K
Sbjct: 242 DRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFK 301
Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
CL WE+LQ+EVAQYINSDVRGVP SMQ +K
Sbjct: 302 CLGGWEMLQVEVAQYINSDVRGVPFSMQVSK 332
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 421 bits (1081), Expect = e-115
Identities = 216/340 (63%), Positives = 262/340 (77%), Gaps = 7/340 (2%)
Frame = +1
Query: 64 LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243
++Q + + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R
Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60
Query: 244 PIENGLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSIC 423
PIE GLLD MGPANKS CATCHG F+ CPGH+GYL L LPV+NVGY S+I+DILK IC
Sbjct: 61 PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120
Query: 424 KSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP------TCHRCGYVNGG 585
K C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC C RCGY+NG
Sbjct: 121 KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180
Query: 586 VKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLD 762
VKKA ++LGIIHDRSK+ + + +E SAI+H KESKA+ +V ++LNPV VL LF+RM D
Sbjct: 181 VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTD 239
Query: 763 EDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQD 942
DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD +SNE+DIT RL II TNASL+Q+
Sbjct: 240 TDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 299
Query: 943 LQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
L K LA WE LQ+EVAQYINSDVRGVP SMQ A+
Sbjct: 300 LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 339
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 410 bits (1055), Expect = e-112
Identities = 216/355 (60%), Positives = 261/355 (73%), Gaps = 22/355 (6%)
Frame = +1
Query: 64 LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243
++Q + + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R
Sbjct: 1 MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60
Query: 244 PIENGLLDSHM---------------GPANKSGICATCHGSFAACPGHFGYLNLVLPVFN 378
PIE GLLD M GPANKS CATCHG F+ CPGH+GYL L LPV+N
Sbjct: 61 PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120
Query: 379 VGYFSSIIDILKSICKSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT- 555
VGY S+I+DILK ICK C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC
Sbjct: 121 VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180
Query: 556 -----CHRCGYVNGGVKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HL 717
C RCGY+NG VKKA ++LGIIHDRSK+ + +E SAI+H KESKA+ +V ++
Sbjct: 181 SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYI 239
Query: 718 LNPVRVLSLFRRMLDEDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITS 897
LNPV VL LF+RM D DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD +SNE+DIT
Sbjct: 240 LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITE 299
Query: 898 RLSTIIATNASLRQDLQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
RL II TNASL+Q+L K LA WE LQ+EVAQYINSDVRGVP SMQ A+
Sbjct: 300 RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 354
>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
gi|561005141|gb|ESW04135.1| hypothetical protein
PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 391 bits (1005), Expect = e-106
Identities = 201/326 (61%), Positives = 244/326 (74%), Gaps = 4/326 (1%)
Frame = +1
Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
+ FTKEP++ED GPRKIK++KFSM S +EI K EVQVW+G +YDS +KPI GLLD M
Sbjct: 9 ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68
Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
GPANKS CATCHG+F CPGH+GYLNL LPVFNVGY SI++ILK ICK CARILL E
Sbjct: 69 GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128
Query: 457 LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627
R+ +LKKMRSSK L K K +I+K C C RCGY+NG VKK + L I+HD
Sbjct: 129 TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDC 188
Query: 628 SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804
SK + EE +S +S IK+SKA+ +V + +LNP +VLSLFR+MLDEDCELLY+ +RPEK
Sbjct: 189 SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248
Query: 805 LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984
LIIT+I VPPI+IRPSV MD SNE+DIT RL II NA LRQ+LQ ++ +SK L W
Sbjct: 249 LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308
Query: 985 ELLQIEVAQYINSDVRGVPSSMQPAK 1062
E+LQ EVAQ+INS+VRG+P MQ K
Sbjct: 309 EILQNEVAQFINSEVRGIPFYMQSTK 334
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 390 bits (1002), Expect = e-106
Identities = 198/331 (59%), Positives = 252/331 (76%), Gaps = 9/331 (2%)
Frame = +1
Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
L FTK+PYIEDVGPRKIKS++F+ FSGAEI K AEVQV++G +YD+TRKPI+ GLLD M
Sbjct: 9 LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68
Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
GPANK CATCH +F CPGH+GY+NL LPVFNVGYF++I++ILK ICKSC+RILL EK
Sbjct: 69 GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128
Query: 457 LRRDYLKKMRSSKMESLQKSGLAKQIVKKC--------KPTCHRCGYVNGGVKKAGSMLG 612
L +D+L+KMR+ K+E+L+K L K+I+KKC C RCGY+NG VKKA SMLG
Sbjct: 129 LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLG 188
Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLW 789
I+H R++ D +S ++ +A ++V + +LNP RVL LF+RM DEDCELL+L
Sbjct: 189 ILHYRARSKDA------GVVS--EDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240
Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
+RPEKLIIT++ VPPI+IRPSV MD +SNE+DIT RL II NAS+ Q+L + +K
Sbjct: 241 NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300
Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
CL W++LQ EVAQ INSDVRG+P SMQ +K
Sbjct: 301 CLESWDMLQSEVAQLINSDVRGIPFSMQVSK 331
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 389 bits (998), Expect = e-105
Identities = 198/326 (60%), Positives = 245/326 (75%), Gaps = 4/326 (1%)
Frame = +1
Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
+ FTKEP++ED GPRKIK++KFS S +EI K AEVQVW+G +YDS +KPI GLLD M
Sbjct: 9 ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRM 68
Query: 277 GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
GPANKS +CATC G+F CPGH+GYLNL LPVFNVGY S+I++ILK ICK CARILL E
Sbjct: 69 GPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDED 128
Query: 457 LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627
R+ +LKKMRSSK L K K +++K C C RCGY+NG VKK + L IIHD
Sbjct: 129 TRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDC 188
Query: 628 SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804
SK + EE SA+S +K+S+A+ +V + +LNP +VLSLF+RMLDEDCELLY+ +RPEK
Sbjct: 189 SKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEK 248
Query: 805 LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984
LI+T++ VPPI+IRPSV MD SNE+DIT RL II NA LRQ+LQ + +SK L W
Sbjct: 249 LIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGW 308
Query: 985 ELLQIEVAQYINSDVRGVPSSMQPAK 1062
++LQ EVAQ+INSDVRG+P MQP K
Sbjct: 309 DILQNEVAQFINSDVRGIPFYMQPTK 334
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 387 bits (994), Expect = e-105
Identities = 201/326 (61%), Positives = 245/326 (75%), Gaps = 9/326 (2%)
Frame = +1
Query: 103 FTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHMGP 282
+TK+PYIEDVGPR+IKSI+FS SG++I KA+E QV G +YD+ +K I GLLD+ MG
Sbjct: 10 YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69
Query: 283 ANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEKLR 462
NK G C TC GSF CPGHFGYLNLVLPV+NVGY S+I+DILK ICKSC+R+L+ EKLR
Sbjct: 70 PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129
Query: 463 RDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLGIIH 621
+ YLK+MR+ + E L+K+ L K+IVKKC C RCGY+NG VKKAGS++GIIH
Sbjct: 130 KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189
Query: 622 DRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLWDRP 798
DRSK++DG EECKSAI H +E++A + ++LNPVRVLSLF+RM++EDCELLYL RP
Sbjct: 190 DRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRP 249
Query: 799 EKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS-KCL 975
EKLIIT IAVPPISIRPSVF + +SNE+DIT RL II NA LR +L T K L
Sbjct: 250 EKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYL 309
Query: 976 ADWELLQIEVAQYINSDVRGVPSSMQ 1053
W+ LQ V YINSDVR +P MQ
Sbjct: 310 IGWDELQAVVTLYINSDVR-IPLDMQ 334
>ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
gi|462403787|gb|EMJ09344.1| hypothetical protein
PRUPE_ppa024521mg, partial [Prunus persica]
Length = 867
Score = 376 bits (966), Expect = e-102
Identities = 195/332 (58%), Positives = 244/332 (73%), Gaps = 10/332 (3%)
Frame = +1
Query: 97 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
L FTK+P+IED G RKI+ +FS S EI AE Q+++ +YD +KPIE GLLD +
Sbjct: 12 LIFTKQPFIEDEGHRKIEKWQFSAMSDTEIVNMAETQIYKCNYYDPNQKPIEGGLLDPRL 71
Query: 277 GPANKS-GICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
GPANKS G CATC CPGHFG+L L LPV NVGY S+++DILK ICK C+ ILL E
Sbjct: 72 GPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTVVDILKCICKLCSGILLEE 131
Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKC-------KPT-CHRCGYVNGGVKKAGSML 609
+R D+LKKMRS KME L+K+ L K+IVKKC +P C +CG++NG VKKA +L
Sbjct: 132 GMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFINGSVKKAVGVL 191
Query: 610 GIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDEDCELLYL 786
GIIHDRSK+ +G ++ ++ +SH KESKASF+V H+LNP R+ SLF+RM+DEDCELL L
Sbjct: 192 GIIHDRSKL-NGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRMVDEDCELLNL 250
Query: 787 WDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS 966
+RP+ LII +IAVPPI+IRPSV +D SNE+DIT RL II +NA LR+DL
Sbjct: 251 SNRPQNLIIKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILRRDLLEAKSAP 310
Query: 967 KCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
KCLA W++LQ+EVAQYINSD+RGVP SMQ AK
Sbjct: 311 KCLASWDILQVEVAQYINSDIRGVPFSMQTAK 342
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 375 bits (962), Expect = e-101
Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
MA +++L+ TKEP+IED G R+IKSI+FSMFSG E+R++AEVQVW Y+ +P+ N
Sbjct: 1 MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICK C+
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG KK + L
Sbjct: 121 RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
I+HD SK +DG+ EE K A+SH KE K SF VH+L+P VLSLF+RM DEDCELL L D
Sbjct: 181 ILHDCSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239
Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
RPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ K
Sbjct: 240 RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299
Query: 970 CLADWELLQIEVAQYINSDVRGVPSS 1047
C W+ LQ++V +YINSD +P S
Sbjct: 300 CFDCWQHLQLQVVEYINSDAPSLPES 325
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 374 bits (960), Expect = e-101
Identities = 193/329 (58%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
MA +++L+ TKEP++EDVG R+IKS++FSMFSG EIR++AE QVW Y + KP+ N
Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD MG ANK G CATCHGS+ CPGHFGYL LVLPVFNVG+F++I+D+LKSICK C+
Sbjct: 61 GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
RILL EK +R++LKKMR+ ++E L K+ L K++ KCK C CGY+NG KK L
Sbjct: 121 RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180
Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
I+HD SK +DG+ EE +SA+SH KE K S VH L+P VLSLF+RM DEDCELL L D
Sbjct: 181 IVHDCSKTLDGSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGD 239
Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
RPEKLIIT+IAVPP+ IRPSVF+ GR SNED IT L I+ TN+ L+ LQ P K
Sbjct: 240 RPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMK 299
Query: 970 CLADWELLQIEVAQYINSDVRGVPSSMQP 1056
C W+LLQ++V +YINSD PS P
Sbjct: 300 CFDCWQLLQLQVVEYINSD---APSLTDP 325
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 371 bits (953), Expect = e-100
Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
MA +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW Y+ KP+ N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG KK + L
Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 613 IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
I+HD SK +DG+ EE + A+SH KE K S V +L+P VLSLF+RM DEDCELL L D
Sbjct: 181 ILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239
Query: 793 RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
RPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ K
Sbjct: 240 RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299
Query: 970 CLADWELLQIEVAQYINSDVRGVPSS 1047
C W+ LQ++V +YINSD +P S
Sbjct: 300 CFDCWQHLQLQVVEYINSDAPSLPES 325
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 370 bits (949), Expect = e-100
Identities = 189/327 (57%), Positives = 241/327 (73%), Gaps = 3/327 (0%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
MA +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW Y+ KP+ N
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAG-SML 609
R+LL EK R ++LKKMR+ K + LQKS + K++ KCK C CG++NG V K G + L
Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGSVAKKGRAGL 180
Query: 610 GIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLW 789
I+HD SK +DG+ EE + A+SH KE K S V +L+P VLSLF+RM DEDCELL L
Sbjct: 181 IILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLG 239
Query: 790 DRPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTS 966
DRPEKLI+T+IAVPP+ IRPSVF+ GR SNED IT L +I TN+ L+++LQ
Sbjct: 240 DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 299
Query: 967 KCLADWELLQIEVAQYINSDVRGVPSS 1047
KC W+ LQ++V +YINSD +P S
Sbjct: 300 KCFDCWQHLQLQVVEYINSDAPSLPES 326
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 368 bits (944), Expect = 3e-99
Identities = 196/335 (58%), Positives = 244/335 (72%), Gaps = 10/335 (2%)
Frame = +1
Query: 88 QDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLD 267
Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K AEV+V+ G +Y+ST+KPI+NGLLD
Sbjct: 5 QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64
Query: 268 SHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILL 447
MGP NKSG C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+ ILL
Sbjct: 65 PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124
Query: 448 PEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVKKAGS 603
+K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VKK
Sbjct: 125 DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182
Query: 604 MLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
L I H++ ++I+D E AIS +E +AS V ++P V SLF+ M DEDCELL
Sbjct: 183 QLKITHEQGNRILD----EINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238
Query: 781 YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
YL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++ ++
Sbjct: 239 YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298
Query: 958 PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
P K L W LQ+EVAQYINSDVRGVP MQP +
Sbjct: 299 PV-KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPR 332
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X2 [Solanum tuberosum]
Length = 1243
Score = 364 bits (935), Expect = 3e-98
Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
M +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD MGP NK+G C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+
Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591
ILL +K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VK
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 592 KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768
K L I H++ ++I+D E AIS +E +AS V L+P V SLF+ M DED
Sbjct: 181 KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234
Query: 769 CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945
CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++
Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294
Query: 946 QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053
++P K L W LQ+EVAQYINSDVRGVP MQ
Sbjct: 295 SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 364 bits (935), Expect = 3e-98
Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%)
Frame = +1
Query: 76 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
M +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 256 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
GLLD MGP NK+G C TCHG+F CPGH+GYL L LPV+NVGY +++DILK ICK C+
Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 436 RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591
ILL +K RRD LKKMR+ + E L+KS L K++VK+C TC +CGY+NG VK
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 592 KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768
K L I H++ ++I+D E AIS +E +AS V L+P V SLF+ M DED
Sbjct: 181 KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234
Query: 769 CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945
CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL II NASL Q++
Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294
Query: 946 QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053
++P K L W LQ+EVAQYINSDVRGVP MQ
Sbjct: 295 SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 361 bits (926), Expect = 3e-97
Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%)
Frame = +1
Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
+++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW G YD + KP ENGLLD
Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65
Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
MGP NK IC TC G+F CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E
Sbjct: 66 MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125
Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
KL D+L+KMR+ +ME L+K+ LAK +VKKC TC +CGY+NG VKK +
Sbjct: 126 KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185
Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
+GI HDRSKI G +ECKSAISH K+S A+ + + ++L+P VL LF+RM D+DCELLY
Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245
Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
+ RPE LIIT + VPP+SIRPSV + +SNE+D+T+RL II NASL + L +
Sbjct: 246 IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305
Query: 964 SKCLADWELLQIEVAQYINSDVRG 1035
K + W+ +QIEVA+YINS+VRG
Sbjct: 306 PKNMQVWDTVQIEVARYINSEVRG 329
>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1376
Score = 361 bits (926), Expect = 3e-97
Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%)
Frame = +1
Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
+++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW G YD + KP ENGLLD
Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65
Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
MGP NK IC TC G+F CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E
Sbjct: 66 MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125
Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
KL D+L+KMR+ +ME L+K+ LAK +VKKC TC +CGY+NG VKK +
Sbjct: 126 KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185
Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
+GI HDRSKI G +ECKSAISH K+S A+ + + ++L+P VL LF+RM D+DCELLY
Sbjct: 186 IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245
Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
+ RPE LIIT + VPP+SIRPSV + +SNE+D+T+RL II NASL + L +
Sbjct: 246 IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305
Query: 964 SKCLADWELLQIEVAQYINSDVRG 1035
K + W+ +QIEVA+YINS+VRG
Sbjct: 306 PKNMQVWDTVQIEVARYINSEVRG 329
>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
Length = 1376
Score = 359 bits (921), Expect = 1e-96
Identities = 185/333 (55%), Positives = 236/333 (70%), Gaps = 10/333 (3%)
Frame = +1
Query: 94 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
+++FTK+PYIEDVGP KIKSI FS+ S E+ KAAEVQVW+ +Y++ KP ENGLLD+
Sbjct: 6 EIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDAR 65
Query: 274 MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
MGP NK IC TC G+F CPGH+GYL L LPV+NVG+F+ I+DILK ICK C+ +LL E
Sbjct: 66 MGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDE 125
Query: 454 KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
KL D+L+KMR+ KME L+K+ LAK +VKKC TC +CGY+NG VKK +
Sbjct: 126 KLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQMG 185
Query: 607 LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
+GI HDRSKI G +ECKSAISH KES + + + ++L+P VL LF+ M D+DCELLY
Sbjct: 186 IGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLY 245
Query: 784 LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
+ RPE LI T + VPP+SIRPSV + RSNE+DIT RL II NA L + L +
Sbjct: 246 IAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTS 305
Query: 964 SKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
K + W+ +Q EVA+YINS+VRGV + QP K
Sbjct: 306 PKNMQVWDTVQSEVAKYINSEVRGVQN--QPEK 336