BLASTX nr result

ID: Akebia27_contig00023164 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00023164
         (1063 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              466   e-129
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   466   e-129
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   443   e-122
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   421   e-115
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   410   e-112
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...   391   e-106
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   390   e-106
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   389   e-105
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   387   e-105
ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part...   376   e-102
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   375   e-101
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   374   e-101
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   371   e-100
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   370   e-100
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   368   3e-99
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   364   3e-98
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   364   3e-98
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   361   3e-97
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   361   3e-97
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   359   1e-96

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  466 bits (1199), Expect = e-129
 Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%)
 Frame = +1

Query: 85   VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264
            ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1    MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 265  DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444
            D  MGPANK+G CATC G+F  CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61   DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 445  LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600
            L EK  +DYLKKMRS KME+L+K+ L K+IV+KC           C RCGY+NG VKKA 
Sbjct: 121  LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 601  SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
            S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181  SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240

Query: 781  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
             L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL  II  NASL Q+LQ T 
Sbjct: 241  NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300

Query: 958  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
             TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+
Sbjct: 301  STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  466 bits (1199), Expect = e-129
 Identities = 232/335 (69%), Positives = 275/335 (82%), Gaps = 9/335 (2%)
 Frame = +1

Query: 85   VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 264
            ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1    MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 265  DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 444
            D  MGPANK+G CATC G+F  CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61   DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 445  LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 600
            L EK  +DYLKKMRS KME+L+K+ L K+IV+KC           C RCGY+NG VKKA 
Sbjct: 121  LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 601  SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
            S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181  SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240

Query: 781  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
             L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL  II  NASL Q+LQ T 
Sbjct: 241  NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300

Query: 958  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
             TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+
Sbjct: 301  STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAAR 335


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  443 bits (1140), Expect = e-122
 Identities = 227/331 (68%), Positives = 264/331 (79%), Gaps = 8/331 (2%)
 Frame = +1

Query: 94   QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
            Q +FTK PYIEDVGPRKIKSI+FSM S +EI KAAEVQV++  +YD   +PIE GLLD  
Sbjct: 2    QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61

Query: 274  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
            MGPANKSG CATCHG+FA CPGH+GYL+L LPV+NVGY S+I+DILK ICKSC+RI+L E
Sbjct: 62   MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121

Query: 454  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLG 612
            KL +DYLK+MRS K+++L+K  + K IVKKC          C RCGYVNG VKKA +MLG
Sbjct: 122  KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181

Query: 613  IIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLW 789
            IIHDRSKI D + EE +SAISH KESKASF+V  ++LNPV+VLSLF+RM D DCELLYL 
Sbjct: 182  IIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLS 241

Query: 790  DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
            DRPEKLIIT+IAVPPI IRPSV MD  +SNE+DIT RL  II  NASLRQ+L  T    K
Sbjct: 242  DRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFK 301

Query: 970  CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            CL  WE+LQ+EVAQYINSDVRGVP SMQ +K
Sbjct: 302  CLGGWEMLQVEVAQYINSDVRGVPFSMQVSK 332


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  421 bits (1081), Expect = e-115
 Identities = 216/340 (63%), Positives = 262/340 (77%), Gaps = 7/340 (2%)
 Frame = +1

Query: 64   LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243
            ++Q +      + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 244  PIENGLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSIC 423
            PIE GLLD  MGPANKS  CATCHG F+ CPGH+GYL L LPV+NVGY S+I+DILK IC
Sbjct: 61   PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120

Query: 424  KSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP------TCHRCGYVNGG 585
            K C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC         C RCGY+NG 
Sbjct: 121  KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180

Query: 586  VKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLD 762
            VKKA ++LGIIHDRSK+ + + +E  SAI+H KESKA+ +V  ++LNPV VL LF+RM D
Sbjct: 181  VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTD 239

Query: 763  EDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQD 942
             DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD  +SNE+DIT RL  II TNASL+Q+
Sbjct: 240  TDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQE 299

Query: 943  LQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            L       K LA WE LQ+EVAQYINSDVRGVP SMQ A+
Sbjct: 300  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 339


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  410 bits (1055), Expect = e-112
 Identities = 216/355 (60%), Positives = 261/355 (73%), Gaps = 22/355 (6%)
 Frame = +1

Query: 64   LSQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRK 243
            ++Q +      + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 244  PIENGLLDSHM---------------GPANKSGICATCHGSFAACPGHFGYLNLVLPVFN 378
            PIE GLLD  M               GPANKS  CATCHG F+ CPGH+GYL L LPV+N
Sbjct: 61   PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120

Query: 379  VGYFSSIIDILKSICKSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT- 555
            VGY S+I+DILK ICK C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC    
Sbjct: 121  VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180

Query: 556  -----CHRCGYVNGGVKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HL 717
                 C RCGY+NG VKKA ++LGIIHDRSK+ +   +E  SAI+H KESKA+ +V  ++
Sbjct: 181  SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYI 239

Query: 718  LNPVRVLSLFRRMLDEDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITS 897
            LNPV VL LF+RM D DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD  +SNE+DIT 
Sbjct: 240  LNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITE 299

Query: 898  RLSTIIATNASLRQDLQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            RL  II TNASL+Q+L       K LA WE LQ+EVAQYINSDVRGVP SMQ A+
Sbjct: 300  RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVAR 354


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score =  391 bits (1005), Expect = e-106
 Identities = 201/326 (61%), Positives = 244/326 (74%), Gaps = 4/326 (1%)
 Frame = +1

Query: 97   LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
            + FTKEP++ED GPRKIK++KFSM S +EI K  EVQVW+G +YDS +KPI  GLLD  M
Sbjct: 9    ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 277  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
            GPANKS  CATCHG+F  CPGH+GYLNL LPVFNVGY  SI++ILK ICK CARILL E 
Sbjct: 69   GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128

Query: 457  LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627
             R+ +LKKMRSSK   L K    K +I+K C     C RCGY+NG VKK  + L I+HD 
Sbjct: 129  TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDC 188

Query: 628  SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804
            SK  +   EE +S +S IK+SKA+ +V + +LNP +VLSLFR+MLDEDCELLY+ +RPEK
Sbjct: 189  SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248

Query: 805  LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984
            LIIT+I VPPI+IRPSV MD   SNE+DIT RL  II  NA LRQ+LQ ++ +SK L  W
Sbjct: 249  LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308

Query: 985  ELLQIEVAQYINSDVRGVPSSMQPAK 1062
            E+LQ EVAQ+INS+VRG+P  MQ  K
Sbjct: 309  EILQNEVAQFINSEVRGIPFYMQSTK 334


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  390 bits (1002), Expect = e-106
 Identities = 198/331 (59%), Positives = 252/331 (76%), Gaps = 9/331 (2%)
 Frame = +1

Query: 97   LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
            L FTK+PYIEDVGPRKIKS++F+ FSGAEI K AEVQV++G +YD+TRKPI+ GLLD  M
Sbjct: 9    LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68

Query: 277  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
            GPANK   CATCH +F  CPGH+GY+NL LPVFNVGYF++I++ILK ICKSC+RILL EK
Sbjct: 69   GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 457  LRRDYLKKMRSSKMESLQKSGLAKQIVKKC--------KPTCHRCGYVNGGVKKAGSMLG 612
            L +D+L+KMR+ K+E+L+K  L K+I+KKC           C RCGY+NG VKKA SMLG
Sbjct: 129  LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLG 188

Query: 613  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLW 789
            I+H R++  D         +S  ++ +A ++V + +LNP RVL LF+RM DEDCELL+L 
Sbjct: 189  ILHYRARSKDA------GVVS--EDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 790  DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
            +RPEKLIIT++ VPPI+IRPSV MD  +SNE+DIT RL  II  NAS+ Q+L  +   +K
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 970  CLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            CL  W++LQ EVAQ INSDVRG+P SMQ +K
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSK 331


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  389 bits (998), Expect = e-105
 Identities = 198/326 (60%), Positives = 245/326 (75%), Gaps = 4/326 (1%)
 Frame = +1

Query: 97   LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
            + FTKEP++ED GPRKIK++KFS  S +EI K AEVQVW+G +YDS +KPI  GLLD  M
Sbjct: 9    ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 277  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 456
            GPANKS +CATC G+F  CPGH+GYLNL LPVFNVGY S+I++ILK ICK CARILL E 
Sbjct: 69   GPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDED 128

Query: 457  LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKP--TCHRCGYVNGGVKKAGSMLGIIHDR 627
             R+ +LKKMRSSK   L K    K +++K C     C RCGY+NG VKK  + L IIHD 
Sbjct: 129  TRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDC 188

Query: 628  SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 804
            SK  +   EE  SA+S +K+S+A+ +V + +LNP +VLSLF+RMLDEDCELLY+ +RPEK
Sbjct: 189  SKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEK 248

Query: 805  LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 984
            LI+T++ VPPI+IRPSV MD   SNE+DIT RL  II  NA LRQ+LQ +  +SK L  W
Sbjct: 249  LIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGW 308

Query: 985  ELLQIEVAQYINSDVRGVPSSMQPAK 1062
            ++LQ EVAQ+INSDVRG+P  MQP K
Sbjct: 309  DILQNEVAQFINSDVRGIPFYMQPTK 334


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  387 bits (994), Expect = e-105
 Identities = 201/326 (61%), Positives = 245/326 (75%), Gaps = 9/326 (2%)
 Frame = +1

Query: 103  FTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHMGP 282
            +TK+PYIEDVGPR+IKSI+FS  SG++I KA+E QV  G +YD+ +K I  GLLD+ MG 
Sbjct: 10   YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69

Query: 283  ANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEKLR 462
             NK G C TC GSF  CPGHFGYLNLVLPV+NVGY S+I+DILK ICKSC+R+L+ EKLR
Sbjct: 70   PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129

Query: 463  RDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLGIIH 621
            + YLK+MR+ + E L+K+ L K+IVKKC          C RCGY+NG VKKAGS++GIIH
Sbjct: 130  KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189

Query: 622  DRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLWDRP 798
            DRSK++DG  EECKSAI H +E++A   +  ++LNPVRVLSLF+RM++EDCELLYL  RP
Sbjct: 190  DRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRP 249

Query: 799  EKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS-KCL 975
            EKLIIT IAVPPISIRPSVF +  +SNE+DIT RL  II  NA LR +L     T  K L
Sbjct: 250  EKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYL 309

Query: 976  ADWELLQIEVAQYINSDVRGVPSSMQ 1053
              W+ LQ  V  YINSDVR +P  MQ
Sbjct: 310  IGWDELQAVVTLYINSDVR-IPLDMQ 334


>ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
            gi|462403787|gb|EMJ09344.1| hypothetical protein
            PRUPE_ppa024521mg, partial [Prunus persica]
          Length = 867

 Score =  376 bits (966), Expect = e-102
 Identities = 195/332 (58%), Positives = 244/332 (73%), Gaps = 10/332 (3%)
 Frame = +1

Query: 97   LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 276
            L FTK+P+IED G RKI+  +FS  S  EI   AE Q+++  +YD  +KPIE GLLD  +
Sbjct: 12   LIFTKQPFIEDEGHRKIEKWQFSAMSDTEIVNMAETQIYKCNYYDPNQKPIEGGLLDPRL 71

Query: 277  GPANKS-GICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
            GPANKS G CATC      CPGHFG+L L LPV NVGY S+++DILK ICK C+ ILL E
Sbjct: 72   GPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTVVDILKCICKLCSGILLEE 131

Query: 454  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKC-------KPT-CHRCGYVNGGVKKAGSML 609
             +R D+LKKMRS KME L+K+ L K+IVKKC       +P  C +CG++NG VKKA  +L
Sbjct: 132  GMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFINGSVKKAVGVL 191

Query: 610  GIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDEDCELLYL 786
            GIIHDRSK+ +G  ++ ++ +SH KESKASF+V  H+LNP R+ SLF+RM+DEDCELL L
Sbjct: 192  GIIHDRSKL-NGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRMVDEDCELLNL 250

Query: 787  WDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS 966
             +RP+ LII +IAVPPI+IRPSV +D   SNE+DIT RL  II +NA LR+DL       
Sbjct: 251  SNRPQNLIIKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILRRDLLEAKSAP 310

Query: 967  KCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            KCLA W++LQ+EVAQYINSD+RGVP SMQ AK
Sbjct: 311  KCLASWDILQVEVAQYINSDIRGVPFSMQTAK 342


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  375 bits (962), Expect = e-101
 Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            MA  +++L+ TKEP+IED G R+IKSI+FSMFSG E+R++AEVQVW    Y+   +P+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICK C+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG  KK  + L 
Sbjct: 121  RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 613  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
            I+HD SK +DG+ EE K A+SH KE K SF  VH+L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 793  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
            RPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      K
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 970  CLADWELLQIEVAQYINSDVRGVPSS 1047
            C   W+ LQ++V +YINSD   +P S
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPES 325


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  374 bits (960), Expect = e-101
 Identities = 193/329 (58%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            MA  +++L+ TKEP++EDVG R+IKS++FSMFSG EIR++AE QVW    Y +  KP+ N
Sbjct: 1    MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD  MG ANK G CATCHGS+  CPGHFGYL LVLPVFNVG+F++I+D+LKSICK C+
Sbjct: 61   GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
            RILL EK +R++LKKMR+ ++E L K+ L K++  KCK   C  CGY+NG  KK    L 
Sbjct: 121  RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180

Query: 613  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
            I+HD SK +DG+ EE +SA+SH KE K S   VH L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  IVHDCSKTLDGSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 793  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
            RPEKLIIT+IAVPP+ IRPSVF+  GR SNED IT  L  I+ TN+ L+  LQ   P  K
Sbjct: 240  RPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMK 299

Query: 970  CLADWELLQIEVAQYINSDVRGVPSSMQP 1056
            C   W+LLQ++V +YINSD    PS   P
Sbjct: 300  CFDCWQLLQLQVVEYINSD---APSLTDP 325


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  371 bits (953), Expect = e-100
 Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 2/326 (0%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            MA  +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW    Y+   KP+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 612
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG  KK  + L 
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 613  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 792
            I+HD SK +DG+ EE + A+SH KE K S   V +L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239

Query: 793  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 969
            RPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      K
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 970  CLADWELLQIEVAQYINSDVRGVPSS 1047
            C   W+ LQ++V +YINSD   +P S
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPES 325


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  370 bits (949), Expect = e-100
 Identities = 189/327 (57%), Positives = 241/327 (73%), Gaps = 3/327 (0%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            MA  +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW    Y+   KP+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAG-SML 609
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG V K G + L
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGSVAKKGRAGL 180

Query: 610  GIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLW 789
             I+HD SK +DG+ EE + A+SH KE K S   V +L+P  VLSLF+RM DEDCELL L 
Sbjct: 181  IILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLG 239

Query: 790  DRPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTS 966
            DRPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      
Sbjct: 240  DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 299

Query: 967  KCLADWELLQIEVAQYINSDVRGVPSS 1047
            KC   W+ LQ++V +YINSD   +P S
Sbjct: 300  KCFDCWQHLQLQVVEYINSDAPSLPES 326


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  368 bits (944), Expect = 3e-99
 Identities = 196/335 (58%), Positives = 244/335 (72%), Gaps = 10/335 (2%)
 Frame = +1

Query: 88   QDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLD 267
            Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K AEV+V+ G +Y+ST+KPI+NGLLD
Sbjct: 5    QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 268  SHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILL 447
              MGP NKSG C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+ ILL
Sbjct: 65   PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 448  PEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVKKAGS 603
             +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 604  MLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 780
             L I H++ ++I+D    E   AIS  +E +AS  V   ++P  V SLF+ M DEDCELL
Sbjct: 183  QLKITHEQGNRILD----EINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238

Query: 781  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 957
            YL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 958  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
            P  K L  W  LQ+EVAQYINSDVRGVP  MQP +
Sbjct: 299  PV-KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPR 332


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  364 bits (935), Expect = 3e-98
 Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            M  +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD  MGP NK+G C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591
             ILL +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 592  KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768
            K    L I H++ ++I+D    E   AIS  +E +AS  V   L+P  V SLF+ M DED
Sbjct: 181  KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234

Query: 769  CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945
            CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++
Sbjct: 235  CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294

Query: 946  QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053
              ++P  K L  W  LQ+EVAQYINSDVRGVP  MQ
Sbjct: 295  SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  364 bits (935), Expect = 3e-98
 Identities = 196/336 (58%), Positives = 245/336 (72%), Gaps = 10/336 (2%)
 Frame = +1

Query: 76   MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 255
            M  +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 256  GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 435
            GLLD  MGP NK+G C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 436  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 591
             ILL +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 592  KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 768
            K    L I H++ ++I+D    E   AIS  +E +AS  V   L+P  V SLF+ M DED
Sbjct: 181  KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234

Query: 769  CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 945
            CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++
Sbjct: 235  CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294

Query: 946  QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQ 1053
              ++P  K L  W  LQ+EVAQYINSDVRGVP  MQ
Sbjct: 295  SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQ 329


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  361 bits (926), Expect = 3e-97
 Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%)
 Frame = +1

Query: 94   QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
            +++FTK+PYIEDVGP KIKSI FS+ S  E+ KAAEVQVW  G YD + KP ENGLLD  
Sbjct: 6    EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65

Query: 274  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
            MGP NK  IC TC G+F  CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E
Sbjct: 66   MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125

Query: 454  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
            KL  D+L+KMR+ +ME L+K+ LAK +VKKC         TC +CGY+NG VKK  +   
Sbjct: 126  KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185

Query: 607  LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
            +GI HDRSKI  G  +ECKSAISH K+S A+ + + ++L+P  VL LF+RM D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245

Query: 784  LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
            +  RPE LIIT + VPP+SIRPSV +   +SNE+D+T+RL  II  NASL + L     +
Sbjct: 246  IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305

Query: 964  SKCLADWELLQIEVAQYINSDVRG 1035
             K +  W+ +QIEVA+YINS+VRG
Sbjct: 306  PKNMQVWDTVQIEVARYINSEVRG 329


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  361 bits (926), Expect = 3e-97
 Identities = 185/324 (57%), Positives = 235/324 (72%), Gaps = 10/324 (3%)
 Frame = +1

Query: 94   QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
            +++FTK+PYIEDVGP KIKSI FS+ S  E+ KAAEVQVW  G YD + KP ENGLLD  
Sbjct: 6    EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65

Query: 274  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
            MGP NK  IC TC G+F  CPGH+GYL L LPV+NVGYF+ I+DILK ICK C+ +LL E
Sbjct: 66   MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125

Query: 454  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
            KL  D+L+KMR+ +ME L+K+ LAK +VKKC         TC +CGY+NG VKK  +   
Sbjct: 126  KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185

Query: 607  LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
            +GI HDRSKI  G  +ECKSAISH K+S A+ + + ++L+P  VL LF+RM D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245

Query: 784  LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
            +  RPE LIIT + VPP+SIRPSV +   +SNE+D+T+RL  II  NASL + L     +
Sbjct: 246  IAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 305

Query: 964  SKCLADWELLQIEVAQYINSDVRG 1035
             K +  W+ +QIEVA+YINS+VRG
Sbjct: 306  PKNMQVWDTVQIEVARYINSEVRG 329


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  359 bits (921), Expect = 1e-96
 Identities = 185/333 (55%), Positives = 236/333 (70%), Gaps = 10/333 (3%)
 Frame = +1

Query: 94   QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 273
            +++FTK+PYIEDVGP KIKSI FS+ S  E+ KAAEVQVW+  +Y++  KP ENGLLD+ 
Sbjct: 6    EIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDAR 65

Query: 274  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 453
            MGP NK  IC TC G+F  CPGH+GYL L LPV+NVG+F+ I+DILK ICK C+ +LL E
Sbjct: 66   MGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDE 125

Query: 454  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 606
            KL  D+L+KMR+ KME L+K+ LAK +VKKC         TC +CGY+NG VKK  +   
Sbjct: 126  KLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQMG 185

Query: 607  LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 783
            +GI HDRSKI  G  +ECKSAISH KES  + + + ++L+P  VL LF+ M D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLY 245

Query: 784  LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 963
            +  RPE LI T + VPP+SIRPSV +   RSNE+DIT RL  II  NA L + L     +
Sbjct: 246  IAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTS 305

Query: 964  SKCLADWELLQIEVAQYINSDVRGVPSSMQPAK 1062
             K +  W+ +Q EVA+YINS+VRGV +  QP K
Sbjct: 306  PKNMQVWDTVQSEVAKYINSEVRGVQN--QPEK 336


Top