BLASTX nr result
ID: Akebia27_contig00022216
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00022216
(3703 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 1680 0.0
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 1605 0.0
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 1589 0.0
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 1584 0.0
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 1583 0.0
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 1581 0.0
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 1574 0.0
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 1559 0.0
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao... 1558 0.0
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 1555 0.0
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 1555 0.0
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 1553 0.0
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 1532 0.0
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 1526 0.0
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 1524 0.0
gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus... 1512 0.0
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 1507 0.0
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 1493 0.0
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s... 1492 0.0
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 1490 0.0
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 1680 bits (4351), Expect = 0.0
Identities = 849/1077 (78%), Positives = 944/1077 (87%), Gaps = 3/1077 (0%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
LA WD LQIEVAQYINSDVRGVP +MQ A+PL GF+QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 306 LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPILMA+IL+YPERVS+HNIEKLRQC+ NGP KYPGA IRYPDG
Sbjct: 366 TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
+M L +S RKR ADELK+GYIVERHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 426 SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFYDRAAFSLMCSYMGD MD VDLPTPA+IKP+ELWTGKQLF+VL+RP AN
Sbjct: 546 SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHAN 605
Query: 2803 MRVYLNLTVLEKNYSK--SGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLL 2630
+RVYLNLTV+EK Y+K ETMCP+DGFVYFRNSEL+ GQLGKATLGNGNKDGLFSVLL
Sbjct: 606 VRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLL 665
Query: 2629 RDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLI 2450
RDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP G LN +K IE+GYE C +LI
Sbjct: 666 RDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELI 725
Query: 2449 QSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGS 2270
Q Y+KG+LKLQPGC+AAQTLEAEITGVLN IRE TA VCM+ELHWRNSPLIMSQCGSKGS
Sbjct: 726 QQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGS 785
Query: 2269 PINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFF 2090
PINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRKSKTP AKGFVA+SFYTGLTATEFF
Sbjct: 786 PINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFF 845
Query: 2089 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMD 1910
FHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSI YD+TVRN++G ++QF YGDDGMD
Sbjct: 846 FHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905
Query: 1909 PAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDA 1730
PA+MEGK+G PLN +RL+LK+KATCP+ +A+LS ++ E V RL H+ + E GCSDA
Sbjct: 906 PARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE-GCSDA 963
Query: 1729 FKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETC 1550
FK +L F + KNTR L L EHV + N EK A NISG+TS+QLQVFL+TC
Sbjct: 964 FKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQVFLDTC 1023
Query: 1549 ISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAK 1370
ISRY LK+ GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIINGAK
Sbjct: 1024 ISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1083
Query: 1369 NISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERIQ 1190
ISTPIITA LEC+N+VK+AR+VKG IE+T LG+VAKS+KIVLTSR A I V LDME IQ
Sbjct: 1084 RISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDMEGIQ 1143
Query: 1189 ASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAMLP 1010
ASQL I ++ V++SIL++ R KLK QH+++L+ KL +HP DRS +HFELH+ K +LP
Sbjct: 1144 ASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQG-DRSTIHFELHALKNLLP 1202
Query: 1009 KVIVKGISSVERAVINK-NKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQETLGI 833
V+VKGI +VERAVINK NK KYNLLVEG L+ VMGT GV G +TTSNHIIEVQ+TLGI
Sbjct: 1203 TVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGI 1262
Query: 832 EAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLAS 653
EAARKCII+EIQYTMASHGMSIDIRHMMLLADLMT++GEVLGITRFGIQKM +SVLMLAS
Sbjct: 1263 EAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLAS 1322
Query: 652 FEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAPD 482
FEKTADHLFNA+ +GRDDKIEGVSECIIMGIPMQ+GTGILKVRQR++QVP L+Y D
Sbjct: 1323 FEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGLD 1379
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 1605 bits (4155), Expect = 0.0
Identities = 814/1076 (75%), Positives = 913/1076 (84%), Gaps = 5/1076 (0%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LLQ+ VA YINS++ +P + QP+K G +QRLKGKQGRFR NL GKRV++TGRTVI
Sbjct: 306 WVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRTVI 365
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNLKITEVAIP LMAQILTY ERV+ HNIEKLRQCVRNGP KYPGANF+ T++
Sbjct: 366 SPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVISGGDTLS 425
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
LRY +KR ADELK G VERHLEDG+IVLFNRQPSLHRMSIM HRARVMPWRTLRFNE
Sbjct: 426 -LRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNE 484
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVASTQDFLTSS+
Sbjct: 485 SVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTSSY 544
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
LITRKDTFYDRA FSLMCSYMGD M+++DLPTPAL+KP+ELWTGKQLFSVL+RP A+M+V
Sbjct: 545 LITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHMKV 604
Query: 2794 YLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNA 2615
Y+NL+++EKNYSK GETMC NDGFVY RNSEL+ GQLGKATLGNGNKDGLFSVLLRDYN+
Sbjct: 605 YVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDYNS 664
Query: 2614 HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDK 2435
HAAASCMNRLAKLSARWIGNHGFSIGIDDV P +L ++K+ I+ GY CD I +YDK
Sbjct: 665 HAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAYDK 724
Query: 2434 GQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINIS 2255
G+L L+PGC+AAQTLEAEIT VLNGIR+A AKVCM+ELHWRNSPLIMSQCGSKGSPINIS
Sbjct: 725 GKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPINIS 784
Query: 2254 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMG 2075
QMIACVGQQSVGGRRAPNGFIDRSLPHFPR KTPAAKGFVANSFYTGLTA EFFFHTMG
Sbjct: 785 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHTMG 844
Query: 2074 GREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQME 1895
GREGLVDTAVKTADTGY+SRRLIK+LEDLS HYDDTVRNSSG +IQF YGDDGMDPA+ME
Sbjct: 845 GREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAKME 904
Query: 1894 GKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSL 1715
GK+GVPLNLDRL++KIKATCP+S A+LSPSE+ IVN+RLS+HDMTPE GCS AFK+ L
Sbjct: 905 GKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEEL 964
Query: 1714 LDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCISRYH 1535
+F KR+ +K TR +L LDE+ VDK LE VAANISG++ QQL+VFLETCISRYH
Sbjct: 965 SNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCISRYH 1024
Query: 1534 LKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTP 1355
LK+ GEPGTQMTLKTFHFAGVASMNITLGVPRIKEI+ +K ISTP
Sbjct: 1025 LKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKKISTP 1084
Query: 1354 IITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERIQASQLR 1175
IITATL CDND KSARIVKG IEKT+LGEVAK++KI +T ASI +TLDM+RI+A Q+
Sbjct: 1085 IITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEALQMA 1144
Query: 1174 ISAHSVKQSILQH-----PRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAMLP 1010
I A +V SI ++ RTKLK + L D KL+I P + R ++ + LH +++LP
Sbjct: 1145 IDAKTVADSISENLKAKVSRTKLKVKPTFTLPD-KLKILLPEIGRKEVLYSLHLLQSLLP 1203
Query: 1009 KVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQETLGIE 830
K+IVKGI +VERAVIN KGK NLLVEG NL AVMGTPGVDG TTSNHI+EV+ TLGIE
Sbjct: 1204 KIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIE 1263
Query: 829 AARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLASF 650
AARK IIDEIQYTM SHGMSID+RHMMLLADLMT++G VLGI RFGI KMKESVLMLASF
Sbjct: 1264 AARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLMLASF 1323
Query: 649 EKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAPD 482
E+TAD LF+A GR D I GVSECIIMG+PMQIGTGIL V+QR EQ+ L Y PD
Sbjct: 1324 ERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPD 1379
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 1589 bits (4114), Expect = 0.0
Identities = 792/1081 (73%), Positives = 908/1081 (83%), Gaps = 10/1081 (0%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LQ++V +YINSD +P S RG +QRLKGK GRFRGNLSGKR EYTGRTVI
Sbjct: 304 WQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNL+ITEVAIPILMA++LTYPERVS +NIEKLRQC+RNGP K+PGANFI PDGT
Sbjct: 359 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKL 418
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
HL+Y R+ AA +LK+G +VERHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
L+TRKD FYDR++FSL+CSY+GDAM+++DLPTPALIKPIELWTGKQLFSVLVRP+A +V
Sbjct: 539 LVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKV 598
Query: 2794 YLNLTVLEKNYSK------SGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVL 2633
+LNLTV EK Y E MCPNDGFVYFRNSEL+ GQ+GKATLGNGNKDG+FS L
Sbjct: 599 FLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTL 658
Query: 2632 LRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKL 2453
+RDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQP +LN+EKK I+ GY+ C L
Sbjct: 659 VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL 718
Query: 2452 IQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKG 2273
I SY KG L+LQPGC+AAQTLE IT VLN IRE KVCM+ LHWRNSPLIMSQCGSKG
Sbjct: 719 IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKG 778
Query: 2272 SPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEF 2093
SPINISQM+ACVGQQSVGGRRAPNGFIDR+LPHFP SKTPAAKGFVANSFYTGLTATEF
Sbjct: 779 SPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEF 838
Query: 2092 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGM 1913
FFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRN+SGG++QF YGDDGM
Sbjct: 839 FFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGM 898
Query: 1912 DPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSD 1733
DPA+MEGK+G PLNLD+L++K+ ATCP LSP E+L+I+N++LS HD + + GCS+
Sbjct: 899 DPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE 958
Query: 1732 AFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLET 1553
FK+ L F RI +K+TRR L LDE+HV + +S F E +AANISG++ +QLQVFL+T
Sbjct: 959 KFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDT 1018
Query: 1552 CISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGA 1373
C+SRYHLKK GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN A
Sbjct: 1019 CLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1078
Query: 1372 KNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERI 1193
K ISTPIITA L + DV SARIVKG +EK VLGEVA+++KIVL S ++VV LDM+RI
Sbjct: 1079 KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRI 1138
Query: 1192 QASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAML 1013
+A + ISA SV+ SIL HP+ KLK +HV +++ KLRI+P +D+SKL +ELH K+ML
Sbjct: 1139 EALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSML 1198
Query: 1012 PKVIVKGISSVERAVIN----KNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQE 845
PKVIVKGI +VERAVI+ +N +Y LLVEG NL AVMGTPGVD KT SNHI+EV
Sbjct: 1199 PKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNR 1258
Query: 844 TLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVL 665
TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI KMK SVL
Sbjct: 1259 TLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVL 1318
Query: 664 MLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 485
MLASFEKTA+HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +P Y P
Sbjct: 1319 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1378
Query: 484 D 482
D
Sbjct: 1379 D 1379
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 1584 bits (4102), Expect = 0.0
Identities = 801/1094 (73%), Positives = 904/1094 (82%), Gaps = 21/1094 (1%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L WD+LQ EVAQ INSDVRG+P SMQ +KPL GF+QRLKGKQGRFRGNL GKRVE+TGR
Sbjct: 302 LESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTGR 361
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVA+PI MA+ILTYPERV+ HNIEKLRQCV NGP KYPGA +R+ DG
Sbjct: 362 TVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLDG 421
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
+M L S RKR ADELK+G IVERHLEDGD+VLFNRQPSLHRMSIM HR RVMPWRTLR
Sbjct: 422 SMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTLR 481
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 482 FNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLT 541
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFYDRAAFSLMCSYMGD MD VDLPTPAL+KPIELWTGKQLFSVLVRP A+
Sbjct: 542 SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHAS 601
Query: 2803 MRVYLNLTVLEKNYSK------SGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLF 2642
M+VYLNLTV EK+YSK ETMCPNDGFVYFRNSEL+ GQ+GKATLGNGNKDGL+
Sbjct: 602 MKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLY 661
Query: 2641 SVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEAC 2462
SVLLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQP L ++K+ +I +GY C
Sbjct: 662 SVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRDC 721
Query: 2461 DKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCG 2282
DK I ++ G L + GCDAAQ+LE++IT +LNGIREATA VCM LHWRNSPLIMSQCG
Sbjct: 722 DKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQCG 781
Query: 2281 SKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTA 2102
SKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF RK+KTPAAKGFVANSFY+GLTA
Sbjct: 782 SKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLTA 841
Query: 2101 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGD 1922
TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYD +VRN+ G ++QF YGD
Sbjct: 842 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYGD 901
Query: 1921 DGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGG 1742
DGMDPAQMEGK+G PLN +RL+LK KATCPS + LSPSE E V +RLS+ D +PE G
Sbjct: 902 DGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPECG 961
Query: 1741 CSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHV---------DKNNSVFLEKVAANISG 1589
CS AF SL F +K + K + L D E D +N V KV NI+G
Sbjct: 962 CSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRNKVVQNIAG 1021
Query: 1588 VTSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITL 1409
VT +QLQVFL+TC+SRYH KK GEPGTQMTLKTFHFAGVASMN+TL
Sbjct: 1022 VTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1081
Query: 1408 GVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRH 1229
GVPRIKEIINGAK ISTPI+TA L D++V AR+VK IEKT LG++AK ++IV++SR
Sbjct: 1082 GVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSRS 1141
Query: 1228 ASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSK 1049
A I + LDME+I+ ++L + A+ VKQ+IL P+ KLK +H+ +L+D+KLR+ P + DR+K
Sbjct: 1142 ALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRNK 1201
Query: 1048 LHFELHSYKAMLPKVIVKGISSVERAVIN------KNKGKYNLLVEGKNLRAVMGTPGVD 887
LHF LH K MLP V+VKGI +V RAVI +N K++LLVEG L+AVMGT GVD
Sbjct: 1202 LHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTEGVD 1261
Query: 886 GCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLG 707
GC T SNHIIEVQ+ LGIEAARKCII+EI+YTM SHGMSIDIRHMMLL DLMT++GEVLG
Sbjct: 1262 GCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLG 1321
Query: 706 ITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKV 527
ITRFGIQKM +SVLMLASFEKTADHLFNA+ NGRDDKIEGVSEC+IMGIPM +GTG+LKV
Sbjct: 1322 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKV 1381
Query: 526 RQRIEQVPMLNYAP 485
RQR+ L Y P
Sbjct: 1382 RQRVSVPQQLPYGP 1395
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 1583 bits (4098), Expect = 0.0
Identities = 797/1082 (73%), Positives = 906/1082 (83%), Gaps = 11/1082 (1%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LQ+EVAQYINSDVRGVP MQ +PL GF QRLKGKQGRFRGNLSGKRVEYTGRTVI
Sbjct: 306 WIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTVI 365
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNLKITEVAIPILMAQILTYPERVS HNIEKLRQCVRNGP KYPGA FIR+PDG+
Sbjct: 366 SPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGSEI 425
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
L +++RKR ADELK GYIV+RHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 426 SLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 485
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFLTSSF
Sbjct: 486 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTSSF 545
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
LITRKDTFY+RA+FSL+CSYMGDAMD DLP+PA IKP+ELWTGKQLF +L+RP + MRV
Sbjct: 546 LITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYSKMRV 605
Query: 2794 YLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNA 2615
Y+NLTV EK+YS GETMCP+DGFVYFRNSEL+ GQLGKATLGNGNKDGL+SVLLRDY +
Sbjct: 606 YVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYKS 665
Query: 2614 HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDK 2435
HAAA+CMNRLAKLSARWIGNHGFSIGIDDV P NL ++K+ I + Y+ C+ I +++
Sbjct: 666 HAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNE 725
Query: 2434 GQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINIS 2255
G+L +QPGCDAAQTLEAE+T LN +R+ K+CM L WRNSPLIMSQCGSKGSPINIS
Sbjct: 726 GKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSPINIS 785
Query: 2254 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMG 2075
QMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+ATEFFFHTMG
Sbjct: 786 QMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMG 845
Query: 2074 GREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQME 1895
GREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRN+S ++QF YGDDGMDP+QME
Sbjct: 846 GREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQME 905
Query: 1894 GKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSL 1715
K G PLN RL++K+KATCP +LS SE+ EIVN RLS HDMTPEGGCS+AF+ SL
Sbjct: 906 EKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAFRSSL 965
Query: 1714 LDFFHKRIT-TMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCISRY 1538
DF K + T+KN R L L EE + ++ +LEK+A NISG+T +QLQVFL TCISRY
Sbjct: 966 SDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGITKRQLQVFLNTCISRY 1025
Query: 1537 HLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNIST 1358
HLK+ GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN AK I+T
Sbjct: 1026 HLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKITT 1085
Query: 1357 PIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERIQASQL 1178
PIIT L ++ +AR++K IEKT+LG+VAKS+KIVL SR ASI ++LDME IQ SQL
Sbjct: 1086 PIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQVSQL 1145
Query: 1177 RISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAMLPKVIV 998
I A++VKQSILQ + KLK +++LN +KL + P ++ KLHFELH K LP V+V
Sbjct: 1146 CIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKLPAVVV 1204
Query: 997 KGISSVERAVINKNKGK----------YNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQ 848
KGI++V+RAV+NK + K Y LLVEG L AVMG GVDG T SNHI+EVQ
Sbjct: 1205 KGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQ 1264
Query: 847 ETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESV 668
TLGIEAAR IIDEI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G+QKMK+SV
Sbjct: 1265 NTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSV 1324
Query: 667 LMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYA 488
LMLASFEKT DHLFNA+ NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQR+EQV LNY
Sbjct: 1325 LMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVEQVE-LNYQ 1383
Query: 487 PD 482
PD
Sbjct: 1384 PD 1385
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 1581 bits (4094), Expect = 0.0
Identities = 797/1085 (73%), Positives = 905/1085 (83%), Gaps = 11/1085 (1%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L W LQ+EVAQYINSDVRGVP MQP +PL GF QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 303 LNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGR 362
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPILMAQILTYPERVS HNIEKLRQCVRNGP KYPGA FIR+PDG
Sbjct: 363 TVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDG 422
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
L +S+RKR ADELK GYIV+RHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLR
Sbjct: 423 NEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLR 482
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFLT
Sbjct: 483 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLT 542
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFY+RA+FSL+CSYMGDAMD DLP+PA IKP+ELWTGKQLF VL+RP +
Sbjct: 543 SSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRPYSK 602
Query: 2803 MRVYLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRD 2624
MRVY+NLT+ EK+YS GETMC +DGFVYFRNSEL+ GQLGKATLGNGNKDGL+SVLLRD
Sbjct: 603 MRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRD 662
Query: 2623 YNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQS 2444
Y +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV P NL ++K+ I + Y+ C+ I
Sbjct: 663 YESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQ 722
Query: 2443 YDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPI 2264
+++G+L +QPGCDAAQTLEAE+T LN +R+ K+CM L WRNSPLIMSQCGSKGSPI
Sbjct: 723 FNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSPI 782
Query: 2263 NISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFH 2084
NISQMIACVGQQSVGGRRAP+GFIDRSLPHFP KSK PAAKGFVA+SF+ GL+ATEFFFH
Sbjct: 783 NISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFH 842
Query: 2083 TMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPA 1904
TMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD TVRN+S ++QF YGDDGMDP+
Sbjct: 843 TMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPS 902
Query: 1903 QMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFK 1724
+ME K G PLN RL++K+KATCP +LS SE+ EIVN RLS HDMTPEGGCS+AF+
Sbjct: 903 RMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAFR 962
Query: 1723 KSLLDFFHKRIT-TMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCI 1547
SL DF K + T+KN R L L EE + ++ +LEK+ NISG+T +QLQVFL TCI
Sbjct: 963 ASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRGYLEKIVLNISGITKKQLQVFLNTCI 1022
Query: 1546 SRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKN 1367
SRYHLK+ GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN AK
Sbjct: 1023 SRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKK 1082
Query: 1366 ISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERIQA 1187
I+TPIITA L ++ +AR++K IEKT+LG+VAKS+KIVL SR ASI ++LDME IQ
Sbjct: 1083 ITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQV 1142
Query: 1186 SQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAMLPK 1007
SQL I A++VKQSILQ + KLK +++LN +KL + P ++ KLHFELH K LP
Sbjct: 1143 SQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKLPA 1201
Query: 1006 VIVKGISSVERAVINKNKGK----------YNLLVEGKNLRAVMGTPGVDGCKTTSNHII 857
V+VKGI++V+RAV+NK + K Y LLVEG L AVMG GVDG T SNHI+
Sbjct: 1202 VVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTKSNHIM 1261
Query: 856 EVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMK 677
EVQ TLGIEAAR IIDEI YTM+SHGM+ID+RHMMLLADLMTYKGEVLGITR G+QKMK
Sbjct: 1262 EVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGITRHGVQKMK 1321
Query: 676 ESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPML 497
+SVLMLASFEKT DHLFNA+ NGRDDKIEGV+ECIIMGIPM IGTG+ K+RQR+E V L
Sbjct: 1322 DSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRVEHVE-L 1380
Query: 496 NYAPD 482
NY PD
Sbjct: 1381 NYQPD 1385
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 1574 bits (4076), Expect = 0.0
Identities = 782/1088 (71%), Positives = 908/1088 (83%), Gaps = 17/1088 (1%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LQ++V +YINSD +P S RG +QRLKGK GRFRGNLSGKR EYTGRTVI
Sbjct: 304 WQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNL+ITEVAIPILMA++LTYPERVS +NIEKLRQC+RNGP K+PGANFI DGT
Sbjct: 359 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTDGTKL 418
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
HL+Y R+ AA +LK+G +VERHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
L+TRKD FYDR++F+L+CSY+GDAM+++DLPTPAL+KPIELWTGKQLFSVLVRP+A +V
Sbjct: 539 LVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNACTKV 598
Query: 2794 YLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNA 2615
+LNLTV EK YSKS ETMCPNDGFVYFRNSEL+ GQ+GK TLGNGNKDG+FS+L+RDYN+
Sbjct: 599 FLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVRDYNS 658
Query: 2614 HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDK 2435
HAAASCMNRLAK SAR+IGNHGFSIG+DDV+P +L+++KK I++GY+ C LI S+ K
Sbjct: 659 HAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLITSFSK 718
Query: 2434 GQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINIS 2255
G L LQPGC+AAQTLE +IT VLN IREA +CMD LHWRNSPLIMSQCGSKGSPINIS
Sbjct: 719 GALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSPINIS 778
Query: 2254 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLT---------- 2105
QM+ CVGQQSVGG RAPNGFIDR+LPHFP SKTPAAKGFVANSFY GLT
Sbjct: 779 QMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFHTMG 838
Query: 2104 -------ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGG 1946
ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRN+SGG
Sbjct: 839 GIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 898
Query: 1945 VIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSR 1766
++QF YGDDGMDPA+MEG++G PLNLD+L++K+ ATCP LSP E+L+I+N++LS
Sbjct: 899 IVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSE 958
Query: 1765 HDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGV 1586
HD + + GCS+ FK+ L DF RI +K+TRR L LDE HV K++S+ E +AANISG+
Sbjct: 959 HDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGKDSSI-EESIAANISGI 1017
Query: 1585 TSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLG 1406
+++QLQVFL+TC+SRYH KK GEPGTQMTLKTFHFAGVASMN+TLG
Sbjct: 1018 SAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1077
Query: 1405 VPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHA 1226
VPRIKEIIN AK ISTPIITA L DV SAR+VKG +EK VLGEVA+ +KIVL S
Sbjct: 1078 VPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQP 1137
Query: 1225 SIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKL 1046
++VV LDM+RI+ + ISA SV+ SIL HPR KLK +HV +++ KLR++P +D+SKL
Sbjct: 1138 NLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKL 1197
Query: 1045 HFELHSYKAMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSN 866
+ELH+ K+MLPKVIVKGI +VERAVI++ KY+LLVEG NL AVMGTPGVD KT SN
Sbjct: 1198 LYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGTPGVDAMKTKSN 1257
Query: 865 HIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQ 686
HI+EV TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI
Sbjct: 1258 HIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYGIA 1317
Query: 685 KMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQV 506
KMK SVLMLASFEKTA+HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++ +
Sbjct: 1318 KMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHL 1377
Query: 505 PMLNYAPD 482
P Y PD
Sbjct: 1378 PEFKYQPD 1385
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 1559 bits (4037), Expect = 0.0
Identities = 799/1100 (72%), Positives = 888/1100 (80%), Gaps = 27/1100 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L +WD LQ VA YINSDVRG+P K GFIQRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 75 LENWDALQAHVALYINSDVRGIPPPKPGEKQYSGFIQRLKGKQGRFRGNLSGKRVEYTGR 134
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIEKLRQCV NGP KYPGA +R DG
Sbjct: 135 TVISPDPNLKITEVAIPIRMARILTYPERVSHHNIEKLRQCVSNGPDKYPGARMLRRADG 194
Query: 3343 TM-------------THLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIM 3203
+ +R S RKR ADELK+G IVERHLEDGDIVLFNRQPSLHRMSIM
Sbjct: 195 STWQGLICFYYLCGHVSIRVS-RKRLADELKYGDIVERHLEDGDIVLFNRQPSLHRMSIM 253
Query: 3202 SHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKN 3023
HRARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKN
Sbjct: 254 CHRARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKN 313
Query: 3022 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTG 2843
GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAM+H DLPTPA+IKP+ELWTG
Sbjct: 314 GEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMEHNDLPTPAVIKPVELWTG 373
Query: 2842 KQLFSVLVRPSANMRVYLNLTVLEKNYS-------KSGETMCPNDGFVYFRNSELVCGQL 2684
KQLFSVLVRP+AN+RV+LNLTV EKNYS + ETMCP DGFV FRNSEL+ GQL
Sbjct: 374 KQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFVCFRNSELISGQL 433
Query: 2683 GKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLN 2504
GK TLGNGNKDGL+S+LLRDY AHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP L
Sbjct: 434 GKGTLGNGNKDGLYSILLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSDKLR 493
Query: 2503 REKKYSIEKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDE 2324
EK I +G + CD I+SY +G L +PGCDAAQ+LEA ITG+LN IRE T K+CM
Sbjct: 494 DEKDQKINEGAKDCDDKIKSYKEGNLPPEPGCDAAQSLEAVITGILNKIREETGKLCMKA 553
Query: 2323 LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAA 2144
L WRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK KTPAA
Sbjct: 554 LPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKDKTPAA 613
Query: 2143 KGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTV 1964
KGFV++SFY GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL +HYD+TV
Sbjct: 614 KGFVSHSFYDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTV 673
Query: 1963 RNSSGGVIQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIV 1784
RN+S +IQF YGDDGMDPA MEGKNG PLN +RL+LK KATCP+ LSP +V E+V
Sbjct: 674 RNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKATCPAGGTEKLSPEKVSELV 733
Query: 1783 NNRLSRHDMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVA 1604
+RLS+ DMTPEGGCS AFK SL F + K T + E H NS + +
Sbjct: 734 ESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCESTEGHAKMENSATTKNIV 793
Query: 1603 ANISGVTSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVAS 1424
+SG T++QL+VFL+TCISRYH KK GEPGTQMTLKTFHFAGVAS
Sbjct: 794 LQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 853
Query: 1423 MNITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIV 1244
MN+TLGVPRIKEIINGAK ISTPIITA LECDN+V ARIV+G IEK LG+VAKS+K V
Sbjct: 854 MNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKISLGQVAKSIKTV 913
Query: 1243 LTSRHASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPN 1064
+TSR AS+V+TLDMERIQ + L I A+ V+ SILQ PR KLK +H+ +L+ +KL I P
Sbjct: 914 MTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLDFKKLEILPYE 973
Query: 1063 VDRSKLHFELHSYKAMLPKVIVKGISSVERAVINKNKG-------KYNLLVEGKNLRAVM 905
+RSKL+ L ML ++VKGI +VERAVI+ K KY LLVEG L VM
Sbjct: 974 SNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVEGTGLLGVM 1033
Query: 904 GTPGVDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTY 725
GT GVDG T +NHIIEVQ+TLGIEAAR CIIDEI+YTM SHGMSID RHMMLLAD+MT
Sbjct: 1034 GTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMTS 1093
Query: 724 KGEVLGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIG 545
+GEVLGITRFGIQKM +SVLMLASFEKTADHLFNA+ NGR+DKIEGVSECIIMGIPMQIG
Sbjct: 1094 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQIG 1153
Query: 544 TGILKVRQRIEQVPMLNYAP 485
TG++KVRQR++ PML+Y P
Sbjct: 1154 TGMIKVRQRVDVPPMLSYGP 1173
>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
[Theobroma cacao]
Length = 1395
Score = 1558 bits (4035), Expect = 0.0
Identities = 794/1097 (72%), Positives = 902/1097 (82%), Gaps = 23/1097 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L W++LQ+EVAQYINSDVRGVP SMQ +KPL GF+QR+KGK GRFRGNLSGKRVEYTGR
Sbjct: 303 LGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGR 362
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+ILTYPERVSNHNIEKLRQCVRNGP KYPGA +RYPDG
Sbjct: 363 TVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDG 422
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
+ L RKR ADELK G +V+RHLEDGDIVLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 423 SARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLR 482
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 483 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 542
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKD FYDRAAFSL+CSYMGD MD +DLPTPAL+KPIELWTGKQLFSVL+RP A+
Sbjct: 543 SSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHAS 602
Query: 2803 MRVYLNLTVLEKNYSK-----------SGETMCPNDGFVYFRNSELVCGQLGKATLGNGN 2657
+RVYLNL V E+NYSK ETMCP+DGFVY RNSEL+CGQLGKATLGNGN
Sbjct: 603 VRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGN 662
Query: 2656 KDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEK 2477
KDGL+SVLLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP LN EK +I
Sbjct: 663 KDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISG 722
Query: 2476 GYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLI 2297
Y+ CD+ IQ++++G+LK +PG DAAQTLEA +T +LN IR+ T KVCM ELHWRNSPLI
Sbjct: 723 DYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLI 782
Query: 2296 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFY 2117
MSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R SKTPAAKGFVANSFY
Sbjct: 783 MSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFY 842
Query: 2116 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQ 1937
+GLTATEFFFHTM GREGLVDTAVKTA+TGYMSRRLIKALEDLSIHYD+TVRN+SG ++Q
Sbjct: 843 SGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQ 902
Query: 1936 FHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDM 1757
F YGDDGMDPA MEGK+G PLN DRL +K+KATCP L +++++ +L++HD
Sbjct: 903 FIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD- 961
Query: 1756 TPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQ 1577
P G CS+AFKKSL F + + +L+ + S LEKV ISG++ +
Sbjct: 962 -PAGVCSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQ-----KSEILEKVGHKISGISDR 1015
Query: 1576 QLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPR 1397
QL+VF+ TCISRY K GEPGTQMTLKTFHFAGVASMNIT GVPR
Sbjct: 1016 QLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1075
Query: 1396 IKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIV 1217
IKEIIN AK ISTP+ITA LE D++ A+IVKG IEKTVLG+VAKS+KIV+TSR AS+V
Sbjct: 1076 IKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVV 1135
Query: 1216 VTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFE 1037
+TLDME I ++L I A+ VK+SILQ P+ KLK QHV++L+ +KL + PP DRS++HFE
Sbjct: 1136 ITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADRSQIHFE 1194
Query: 1036 LHSYKAMLPKVIVKGISSVERAVI-NKNKGKYN-----------LLVEGKNLRAVMGTPG 893
LHS K +LP V+VKGI +VER V+ +KNK K N LLVEG L+AVMG G
Sbjct: 1195 LHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEG 1254
Query: 892 VDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEV 713
+DG +T SNH++E+++ LGIEAARKCIIDEI TM HGM+ID RHMMLLAD+MT++GEV
Sbjct: 1255 IDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEV 1314
Query: 712 LGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGIL 533
LGITRFGIQKM +S+LMLASFE+TADHLFNAA NGRDDKIEGV+ECIIMGIPMQIGTGIL
Sbjct: 1315 LGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGIL 1374
Query: 532 KVRQRIEQVPMLNYAPD 482
KV QR++ PML Y PD
Sbjct: 1375 KVIQRVDPPPMLRYGPD 1391
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 1555 bits (4027), Expect = 0.0
Identities = 795/1098 (72%), Positives = 898/1098 (81%), Gaps = 24/1098 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
LA W+ LQ+EVAQYINSDVRGVP SMQ A+PL GF+QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 310 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 369
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIEKLRQC++NGP KYPGA IRYPDG
Sbjct: 370 TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 429
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
T L R + A ELK G IV+RHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 430 TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 489
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 490 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 549
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFYDRAAFSLMC YMGD MD VDLPTPA++KP+ELWTGKQLFSVL+RP AN
Sbjct: 550 SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 609
Query: 2803 MRVYLNLTVLEKNYSKS-----------GETMCPNDGFVYFRNSELVCGQLGKATLGNGN 2657
MRVY+NLTV EK YS ETMCPNDGFVYFRNSEL+ GQLGKATLGNGN
Sbjct: 610 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGN 669
Query: 2656 KDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEK 2477
KDGL+SVLLRDY AHA + CMNRLAKLSARWIGNHGFSIGIDDVQP+ L+ +K I +
Sbjct: 670 KDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 729
Query: 2476 GYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLI 2297
YE C+ I+ Y++G+L+L+PGCDAAQTLEA IT +LN IRE K CM L WRNSPLI
Sbjct: 730 NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 789
Query: 2296 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFY 2117
MSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK+K PAAKGFVANSFY
Sbjct: 790 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 849
Query: 2116 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQ 1937
+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD++VRN+ G ++Q
Sbjct: 850 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 909
Query: 1936 FHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDM 1757
F YGDDGMDPA MEGK+G PLN DRL +K+KATCP + LSP +V EIV +L+ +
Sbjct: 910 FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG- 968
Query: 1756 TPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQ 1577
+ CS+AF SL FF + + ++ E+ + S LE+V SG+T +
Sbjct: 969 --KESCSEAFLNSLRKFFEGQ---QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 1023
Query: 1576 QLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPR 1397
QL+VF++TC SRYH+K+ GEPGTQMTLKTFHFAGVASMNIT GVPR
Sbjct: 1024 QLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1083
Query: 1396 IKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIV 1217
IKEIINGAK ISTPIITA LEC+++ +AR+VKG IEKT+LG+VAKS+KIV+TSR ASIV
Sbjct: 1084 IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1143
Query: 1216 VTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFE 1037
+ LDME IQ + L I+A VK+SI+Q P+ KLK QH+++L+ +KL I PP VD+SK+HFE
Sbjct: 1144 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFE 1202
Query: 1036 LHSYKAMLPKVIVKGISSVERAVI------------NKNKGKYNLLVEGKNLRAVMGTPG 893
L+S K +LP VIVKGI +VER VI N K KY LLVEG L+AVMG G
Sbjct: 1203 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1262
Query: 892 VDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEV 713
+DGCKT SNHI EVQ+TLGIEAAR CIIDEI TM +HGMSID RHMMLLADLMT++GEV
Sbjct: 1263 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1322
Query: 712 LGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGIL 533
LGITRFGIQKM +SVLMLASFEKTADHLFNA+ NGRDD+IEGVSECIIMGIPM +GTGIL
Sbjct: 1323 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1382
Query: 532 KVRQRIEQVPMLNY-APD 482
K+RQR PML Y APD
Sbjct: 1383 KIRQRDAVPPMLKYGAPD 1400
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 1555 bits (4027), Expect = 0.0
Identities = 776/1092 (71%), Positives = 901/1092 (82%), Gaps = 21/1092 (1%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LQ++V +++NSD +P S RG +QRLKGK GRFRGNLSGKR EYTGRTVI
Sbjct: 307 WQQLQLQVVEFVNSDAPCLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 361
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNL+ITEVAIP+LMA++LTYPERVSN+N+EKLRQC+RNGP K+PGANFI PDGT
Sbjct: 362 SPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGTKL 421
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
L+Y R+ A +LK GY VERHLEDGD+VLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 422 SLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 481
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 482 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 541
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
L+TRKD FYDR++F+L+CSY+GDAM+++DLPTPALIKPIELWTGKQLFSVLVRP+A +V
Sbjct: 542 LVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNARTKV 601
Query: 2794 YLNLTVLEKNYSKSGE----------------TMCPNDGFVYFRNSELVCGQLGKATLGN 2663
+LNL V EK YSK E TMCPNDG+VYFRNSEL+ GQ+GKATLGN
Sbjct: 602 FLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGN 661
Query: 2662 GNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSI 2483
GNKDG++SVLLRDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQP +LNR+KK I
Sbjct: 662 GNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKKI 721
Query: 2482 EKGYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSP 2303
++GY+ C LI + KG L L PGC+AAQTLE +ITGVLN IR A VCMD LHWRNSP
Sbjct: 722 DEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWRNSP 781
Query: 2302 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANS 2123
LIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFP SKTPAAKGFVANS
Sbjct: 782 LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVANS 841
Query: 2122 FYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGV 1943
FYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRN+SGG+
Sbjct: 842 FYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGI 901
Query: 1942 IQFHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRH 1763
+QF YGDDGMDPA+MEGK+G PLNLD+L++K+ ATCP LSP ++ +++ ++L++H
Sbjct: 902 VQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKLTQH 961
Query: 1762 DMTPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVT 1583
+ +GGCS+ FK+ L F +RI +K TR+ L LDE+HV KN+S E +AANISG++
Sbjct: 962 KTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEIIAANISGIS 1021
Query: 1582 SQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGV 1403
++QLQVFL+TC SRY+ K GEPGTQMTLKTFHFAGVASMN+TLGV
Sbjct: 1022 AKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1081
Query: 1402 PRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHAS 1223
PRIKEIIN AK ISTPIIT L DV SARIVKG +EK VLGEVA ++KIVL S +
Sbjct: 1082 PRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQPN 1141
Query: 1222 IVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLH 1043
+VV LDM+ I+A + ISA SV+ SIL HP+ KLK +HV +++ KLRI+P D+SKL
Sbjct: 1142 LVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQ 1201
Query: 1042 FELHSYKAMLPKVIVKGISSVERAVINKNK-----GKYNLLVEGKNLRAVMGTPGVDGCK 878
ELH+ KAMLPKVIVKGI +VER VI++ K KYNLLVEG NL AVMGTPGVD
Sbjct: 1202 LELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVDARN 1261
Query: 877 TTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITR 698
T SNHI+E+ TLGIEAAR+ IIDEIQYTM SHGM+ID+RHMMLLADLMTYKGEVLGITR
Sbjct: 1262 TKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGITR 1321
Query: 697 FGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQR 518
+GI KMK SVLMLASFEKT++HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR
Sbjct: 1322 YGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQR 1381
Query: 517 IEQVPMLNYAPD 482
++ +P L Y PD
Sbjct: 1382 LDHLPELKYQPD 1393
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 1553 bits (4020), Expect = 0.0
Identities = 775/1089 (71%), Positives = 898/1089 (82%), Gaps = 18/1089 (1%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LQ++V +Y+NSD +P S RG +QRLKGK GRFRGNLSGKR EYTGRTVI
Sbjct: 304 WQYLQLQVVEYVNSDAPCLPDSQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNLKITEVAIP+LMA++LTYPERVSN+NIEKLRQC+RNGP KYPGANF+ PDG
Sbjct: 359 SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQ 418
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
L+Y R+ A +LK G IVERHLEDGD+VLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 419 SLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
L+TRKDTFYDR++F+L+CSY+GDAM+++DLPTPALIKPIELWTGKQLFSVLVRP+A+ RV
Sbjct: 539 LVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRV 598
Query: 2794 YLNLTVLEKNYSKSG-------------ETMCPNDGFVYFRNSELVCGQLGKATLGNGNK 2654
+LNL V EK YSK ETMCPNDG+VYFRNSEL+ GQ+GKATLGNGNK
Sbjct: 599 FLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNK 658
Query: 2653 DGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKG 2474
DGL+SVLLRDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQP +LNR+KK I+ G
Sbjct: 659 DGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGG 718
Query: 2473 YEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIM 2294
Y+ C LI + KG L L PGC+AAQTLE ITGVLN IR VCMD LHWRNSPLIM
Sbjct: 719 YKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIM 778
Query: 2293 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYT 2114
SQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF++R+LPHFP SKTPAAKGFVANSFYT
Sbjct: 779 SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYT 838
Query: 2113 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQF 1934
GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRN+SGG++QF
Sbjct: 839 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQF 898
Query: 1933 HYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMT 1754
YGDDGMDPA+MEGK+G+PLNLD+L++K+ ATCP LSP + +++ ++L +HD +
Sbjct: 899 LYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTS 958
Query: 1753 PEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQ 1574
+GGCS+ FKK+L +F KRI MK TRR L L E+HV+K +S E VAA ISG++++Q
Sbjct: 959 SDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQ 1018
Query: 1573 LQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRI 1394
LQVFL+TC+SRY KK GEPGTQMTLKTFHFAGVASMN+TLGVPRI
Sbjct: 1019 LQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1078
Query: 1393 KEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVV 1214
KEIIN A+ ISTPIITA L DV SARIVKG +EK VLGEVA +++IVL S +++V
Sbjct: 1079 KEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIV 1138
Query: 1213 TLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFEL 1034
LDM+ I++ + ISA SV+ SIL HP+ KLK +HV +++ KLRI+P D+ KL EL
Sbjct: 1139 KLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLEL 1198
Query: 1033 HSYKAMLPKVIVKGISSVERAVINKNKGK-----YNLLVEGKNLRAVMGTPGVDGCKTTS 869
H+ K++LPKVIVKGI +VER VI++ K K Y LLVEG NL AVMGTPGVD KT S
Sbjct: 1199 HNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKS 1258
Query: 868 NHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGI 689
NHI+E +TLGIEAAR+ IIDEIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI
Sbjct: 1259 NHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGI 1318
Query: 688 QKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQ 509
KMK SVLMLASFEKT++HLFNA+ +GR+D+IEGVSECIIMGIPMQ+GTGILKVRQR++
Sbjct: 1319 AKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDH 1378
Query: 508 VPMLNYAPD 482
VP Y PD
Sbjct: 1379 VPEFKYQPD 1387
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 1532 bits (3967), Expect = 0.0
Identities = 786/1102 (71%), Positives = 901/1102 (81%), Gaps = 28/1102 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L WD LQ VA Y+NSDVR VP++++ KPL GF+QRLKGKQGRFRGNLSGKRVE+TGR
Sbjct: 280 LDSWDGLQAAVALYMNSDVR-VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGR 338
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+IL+YPERVS+HNIEKLRQ V NGPQKYPGA+ +RYPDG
Sbjct: 339 TVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDG 398
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
+ L S RK A+EL G IV+RHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 399 SSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 458
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGV-QNNLCTPKNGEILVASTQDFL 2987
FNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGV QNNLCTPKNGEILVASTQDFL
Sbjct: 459 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFL 518
Query: 2986 TSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSA 2807
TSSFLITR+DTFYDRAAFSLMCSYM D MD +DLPTPA++KPIELWTGKQLFSVL+RP+A
Sbjct: 519 TSSFLITRRDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNA 578
Query: 2806 NMRVYLNLTVLEKNYSK-------SGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDG 2648
N+RVY+NL V EK YSK ETMCPNDGFVY RNSEL+ GQLGKATLGNGNKDG
Sbjct: 579 NVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDG 638
Query: 2647 LFSVLLRDYNAHAAASCMNRLAKLS--ARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKG 2474
L+S+LLRDYN HAAA+CMNRLAKL ARWIGNHGFSIGIDDVQP L K +I G
Sbjct: 639 LYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNG 698
Query: 2473 YEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIM 2294
Y+ CDKLI+ Y++G+L L+PGCDA QTLE+EIT LN +RE VCM ELHWRNSPLIM
Sbjct: 699 YQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIM 758
Query: 2293 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYT 2114
SQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHFPRKSKTPAAKGFVANSFY+
Sbjct: 759 SQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYS 818
Query: 2113 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQF 1934
GL ATEFFFHTM GREGLVDTAVKTADTGYMSRRLIK LEDLSI YD+TVRN+SG ++QF
Sbjct: 819 GLMATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQF 878
Query: 1933 HYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMT 1754
YGDDG+DPA MEGK GVPLNLDRL+ K+KATCP LSP ++ ++V N L +HDM
Sbjct: 879 LYGDDGLDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMA 938
Query: 1753 PEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKN--------NSVFLEKVAAN 1598
G CS+AFKKSL F +++ +L E+ +N NS +E++A
Sbjct: 939 LGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHK 998
Query: 1597 ISGVTSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMN 1418
I GV+ +Q++VF++TCI+RY K+ GEPGTQMTLKTFHFAGVASMN
Sbjct: 999 IFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1058
Query: 1417 ITLGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLT 1238
IT GVPRIKEIINGAK ISTPIITA LE + +V +ARI KG I+KTVLG+VAKS+KIV+T
Sbjct: 1059 ITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMT 1118
Query: 1237 SRHASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVD 1058
SR AS+V+TLDM+ IQ +QL + A+ VK++IL+ PR KLKPQH+++L+ +KL + P D
Sbjct: 1119 SRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVIPLG-D 1177
Query: 1057 RSKLHFELHSYKAMLPKVIVKGISSVERAVI--NKNKGK--------YNLLVEGKNLRAV 908
R ++HFELH+ K +LP +IV+GI +VERAVI K+ GK YN+LVEG L V
Sbjct: 1178 RERVHFELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLV 1237
Query: 907 MGTPGVDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMT 728
MGT GVDGCKTTSNH++EVQ+ LGIEAARKCIIDEI TM HGMSIDIRHMMLL DLMT
Sbjct: 1238 MGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMT 1297
Query: 727 YKGEVLGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQI 548
+KGEVLGITRFGIQKM +SVLMLASFEKTADHL++AA GRDDKIEGVSECIIMGIPMQI
Sbjct: 1298 FKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQI 1357
Query: 547 GTGILKVRQRIEQVPMLNYAPD 482
GTGILKV+QR++ P+LNY D
Sbjct: 1358 GTGILKVQQRVDPPPVLNYGSD 1379
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 1526 bits (3950), Expect = 0.0
Identities = 766/1073 (71%), Positives = 878/1073 (81%), Gaps = 3/1073 (0%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
WD LQI+VA YINS++ G+P +MQ KPLRGF+QRLKGKQGRFRGNLSGKRV++TGRTVI
Sbjct: 323 WDFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVI 382
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNLK++EVA+PILMAQ LTYPE+VS HNIEKLRQ V NG +K+PGANF+ +PDG
Sbjct: 383 SPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVVFPDGVKR 442
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
L++ RKR A ELK+G +VERHLEDGDIVLFNRQPSLHRMSIM HRARVMPWRTLRFNE
Sbjct: 443 FLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNE 502
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 503 SVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSF 562
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
LITR+DTFYDR F+LMCSYMGDA++H+DLPTPA++KP+ELWTGKQLF VL+RPSA ++V
Sbjct: 563 LITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQLFGVLIRPSARIKV 622
Query: 2794 YLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYNA 2615
+LN V EKN+ K ETMCP DG+V+F+NSEL+CGQLGK TLGNG+KDGLF+VLLRDY
Sbjct: 623 FLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGLFTVLLRDYGE 682
Query: 2614 HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYDK 2435
AAASCMNRLAKLSARWIGNHGFSIGIDDVQP L EK+ I +GY ACDK I ++K
Sbjct: 683 QAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAEGYRACDKHISLFNK 742
Query: 2434 GQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINIS 2255
GQL LQPGCDAAQTLE+EITG LN IREA +VC++ELHWRNSPLIMSQCGSKGS INIS
Sbjct: 743 GQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRNSPLIMSQCGSKGSVINIS 802
Query: 2254 QMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTMG 2075
QMIACVGQQSV G RAPNGFI+RSLPHFPR KTP AKGFVANSFY+GLTATEF FHTMG
Sbjct: 803 QMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATEFIFHTMG 862
Query: 2074 GREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQME 1895
GREGLVDTAVKTA+TGYMSRRL+KALEDLS YD TVRNSSG ++Q YGDD MDP ME
Sbjct: 863 GREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMDPVSME 922
Query: 1894 GKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAFKKSL 1715
G+NG PLNLDR+ +K KATCP T L PSE+ +IV ++ S+ CS AF SL
Sbjct: 923 GQNGTPLNLDRVLMKAKATCPRGTTPALPPSELWKIVESKFSQDG----SECSTAFLDSL 978
Query: 1714 LDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQLQVFLETCISRYH 1535
F K T+ +TR+ L L +D +V E VAAN+SG+TS+QL+VFL TCI RYH
Sbjct: 979 RKFLRKEFDTISSTRKRLSLP---LDDFGNVDDENVAANVSGLTSRQLEVFLNTCIGRYH 1035
Query: 1534 LKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINGAKNISTP 1355
KK GEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN +K ISTP
Sbjct: 1036 RKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKKISTP 1095
Query: 1354 IITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDMERIQASQLR 1175
IITA L +NDVK+ARIVKG IEKT LG+VAKS+KIVL A + + LDM+RI + QL
Sbjct: 1096 IITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDMDRIYSLQLD 1155
Query: 1174 ISAHSVKQSILQHPR---TKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYKAMLPKV 1004
I A +V +++L+ P+ KLK QHV++ +D+ + + P DR K+ F LHS + MLPKV
Sbjct: 1156 IRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALHSLQNMLPKV 1215
Query: 1003 IVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQETLGIEAA 824
IVKGI +VERAVIN+ KGKYNLLVEG NL+AVMGT GVDG +TTSNHI E E LGIEAA
Sbjct: 1216 IVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMGTEGVDGRETTSNHIFETVEVLGIEAA 1275
Query: 823 RKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLMLASFEK 644
R II EIQYTM SHGMSID RHMMLLAD+MTY+GE+LGITRFG+ KMK+SVLMLASFEK
Sbjct: 1276 RNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEILGITRFGMAKMKDSVLMLASFEK 1335
Query: 643 TADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 485
T DHLF A+ +GR D+IEGVSECIIMGIPM +GTG+ KVRQ++ ++P L Y P
Sbjct: 1336 TTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFKVRQKVGRIPKLIYGP 1388
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 1524 bits (3947), Expect = 0.0
Identities = 766/1091 (70%), Positives = 893/1091 (81%), Gaps = 20/1091 (1%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVI 3515
W LLQ++V +YINSD PS P RG +QRLKGK GRFRGNLSGKR EYTGRTVI
Sbjct: 304 WQLLQLQVVEYINSDA---PSLTDPQN--RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3514 SPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTMT 3335
SPDPNL+ITEVAIP+LMA++LTYPERVS +NIEKLRQC+RNGP K+PGANF+ PDGT
Sbjct: 359 SPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKL 418
Query: 3334 HLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNE 3155
HL+Y R+ AA +LK+G IVERHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 3154 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 2975
SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2974 LITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMRV 2795
LITRKD FYDR+ F+L+CSY+GDAM+++DLPTPA+IKP+ELWTGKQLFSVLVRP+A +V
Sbjct: 539 LITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKV 598
Query: 2794 YLNLTVLEKNYSKS-----------GETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDG 2648
YLNLTV EK Y K ETMCPNDG+VYFRNSEL+ GQ+GK TLGNGNKDG
Sbjct: 599 YLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDG 658
Query: 2647 LFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYE 2468
+FSVL+RDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQP +LN++KK +I++GY
Sbjct: 659 MFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYT 718
Query: 2467 ACDKLIQSYDKGQ--LKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIM 2294
C LI Y KG +L PGC+ AQTLE ++ +LN +RE + CM+ LHWRNSPLIM
Sbjct: 719 ECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIM 778
Query: 2293 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYT 2114
SQCGSKGSPINISQM+ CVGQQSVGGRRAP+GFIDR+LPHFP SKTPAAKGFVANSFYT
Sbjct: 779 SQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYT 838
Query: 2113 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQF 1934
GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRN+S G++QF
Sbjct: 839 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQF 898
Query: 1933 HYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMT 1754
YGDDGMDP +MEGK G PLNLD+L++K+KATCP H LSP +++++N++LS DM+
Sbjct: 899 VYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMS 958
Query: 1753 PEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQ 1574
GGCSD FK+ L FF RI +++TRR L LDE+HV +S E++AANISG++++Q
Sbjct: 959 -SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERIAANISGISAKQ 1017
Query: 1573 LQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRI 1394
LQVFL+TC+SRYH K GEPGTQMTLKTFHFAGVASMN+TLGVPRI
Sbjct: 1018 LQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1077
Query: 1393 KEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVV 1214
KEIIN AKNISTPIITA L D+ A VK +EK VLGEVA +KIVL S ++VV
Sbjct: 1078 KEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVV 1137
Query: 1213 TLDMERIQA-SQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFE 1037
LDM+RI+A + IS+ SV+QSI++HP+ KLK +HV +++ KLRI+P D+SKL E
Sbjct: 1138 KLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLE 1197
Query: 1036 LHSYKAMLPKVIVKGISSVERAVIN------KNKGKYNLLVEGKNLRAVMGTPGVDGCKT 875
LH+ K+MLPKVIVKGI +VERAV+N K +YNLLVEG NL V+GTPGVD KT
Sbjct: 1198 LHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKT 1257
Query: 874 TSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRF 695
SNHI+EV +TLGIEAAR+ IIDEI+YT S+ M ID RHMMLLADLMTYKGEVLGITRF
Sbjct: 1258 KSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRF 1317
Query: 694 GIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRI 515
GI KMK SVLMLASFEKT +HLFNA+ +GR+D+IEGVSECIIMGIPM +G+GILKVRQR+
Sbjct: 1318 GIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRL 1377
Query: 514 EQVPMLNYAPD 482
+ +P NY PD
Sbjct: 1378 DHLPEFNYQPD 1388
>gb|EYU23204.1| hypothetical protein MIMGU_mgv1a000506mg [Mimulus guttatus]
Length = 1109
Score = 1512 bits (3915), Expect = 0.0
Identities = 777/1099 (70%), Positives = 894/1099 (81%), Gaps = 27/1099 (2%)
Frame = -1
Query: 3697 DWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTV 3518
+WD LQ+EVAQYINSDVR + KPL GF+QRLKGK GRFRGNLSGKRVE+TGRTV
Sbjct: 14 NWDSLQVEVAQYINSDVRVPLQYSENTKPLSGFVQRLKGKHGRFRGNLSGKRVEFTGRTV 73
Query: 3517 ISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGTM 3338
ISPDPNLKI EVA+PILMAQIL+YPERVS+HNIE+LRQCVRNGP KYPGA FI++PDGT
Sbjct: 74 ISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKHPDGTE 133
Query: 3337 THLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFN 3158
L R R AD+LK+GYIV RHL+DGDI+LFNRQPSLHRMSIMSHRAR+MPWRTLRFN
Sbjct: 134 ISLTSKVRHRHADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWRTLRFN 193
Query: 3157 ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 2978
ESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 194 ESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 253
Query: 2977 FLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANMR 2798
+LITRKDTFYDRA+FSL+CSYMGDAMD +DLPTPAL+KP+ELWTGKQLFS+L+RP A MR
Sbjct: 254 YLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRPHAKMR 313
Query: 2797 VYLNLTVLEKNYSKSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLRDYN 2618
VY+NLTV EKNY KSGETMCP DGFVY RNSEL+ GQLGKATLGNG+KDGL+SVLLRDY+
Sbjct: 314 VYVNLTVAEKNYGKSGETMCPKDGFVYIRNSELISGQLGKATLGNGSKDGLYSVLLRDYS 373
Query: 2617 AHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQSYD 2438
AHAAA+CMNRLAKLSARWIGNHGFSIGI+DVQP LN+EKK +I+KGY C I SY
Sbjct: 374 AHAAATCMNRLAKLSARWIGNHGFSIGINDVQPGIVLNKEKKVTIDKGYGQCIDYIGSYK 433
Query: 2437 KGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSPINI 2258
G L L PGC+ A+TLEA ITG LN IRE TA VCM+ LHWRNSPLIMSQCGSKGSPINI
Sbjct: 434 SGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNNLHWRNSPLIMSQCGSKGSPINI 493
Query: 2257 SQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHTM 2078
+QM+ACVGQQSVGGRRAPNGF+DR+LPHF R++K P AKGFV NSFYTGL+ATEFFFHTM
Sbjct: 494 AQMVACVGQQSVGGRRAPNGFVDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFFHTM 553
Query: 2077 GGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDPAQM 1898
GGREGLVDTAVKTADTGYM+RRL+KALEDLS+HYD TVRN+S ++QF YG D MDP QM
Sbjct: 554 GGREGLVDTAVKTADTGYMARRLMKALEDLSVHYDGTVRNASVCIVQFVYGGDAMDPGQM 613
Query: 1897 EGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEV----LEIVNNRLSRHDMTPEGGCSDA 1730
E K+G+PLN +RL++K KATCP+ +LS E+ EI+ +RLS TPEG S A
Sbjct: 614 EEKSGLPLNFERLFMKAKATCPAVEQKSLSIEEIDKTMDEIIGDRLSESTGTPEGESSQA 673
Query: 1729 FK-------------KSLLDFFHKRITTMKNTRRLLQLD-EEHVDKNNSVFLEKVAANIS 1592
F SL F K+ N+ +L+L+ +EH D++ +LEK+A+NI
Sbjct: 674 FSASSNKEGGMETFDNSLRKFIQKK---YPNSDLMLKLNGKEHPDEDKG-YLEKIASNIC 729
Query: 1591 GVTSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNIT 1412
GVT QQL VFLETCISRY LKK GEPGTQMTLKTFHFAGVASMN+T
Sbjct: 730 GVTRQQLMVFLETCISRYSLKKIEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 789
Query: 1411 LGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSR 1232
LGVPRIKEIIN AK I+TPIIT L+ DN+ A+IVKG IEKT+L +VAKS+K SR
Sbjct: 790 LGVPRIKEIINAAKKINTPIITTALQSDNNEIIAKIVKGRIEKTLLEQVAKSIKTSQASR 849
Query: 1231 HASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRS 1052
ASIV+TLDM +IQ + L + A++VK+SIL+ R KLK Q V++L+ +KL I + D+
Sbjct: 850 SASIVITLDMTKIQGAHLSVDAYTVKESILKTKRMKLKEQQVKVLDHRKLEI-VMHADKK 908
Query: 1051 KLHFELHSYKAMLPKVIVKGISSVERAVI---------NKNKGKYNLLVEGKNLRAVMGT 899
KL FELH K + KV+VKGI +VERA+I + NK K LLVEG L +VMG
Sbjct: 909 KLQFELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANK-KMKLLVEGTGLLSVMGI 967
Query: 898 PGVDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKG 719
GV+G KTTSNHIIEVQ TLGIEAARK IIDEIQYTM+SHGM+IDIRHMMLLADLMT+KG
Sbjct: 968 EGVEGRKTTSNHIIEVQHTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTFKG 1027
Query: 718 EVLGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTG 539
EVLGITR+G+QKMK+SVLMLASFE+T+DHLFNA+ +G+ DKIEGVSECIIMGIP+QIGTG
Sbjct: 1028 EVLGITRYGVQKMKDSVLMLASFERTSDHLFNASAHGKVDKIEGVSECIIMGIPVQIGTG 1087
Query: 538 ILKVRQRIEQVPMLNYAPD 482
+LKVRQ ++ + L Y PD
Sbjct: 1088 MLKVRQSVKPIE-LTYGPD 1105
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 1507 bits (3901), Expect = 0.0
Identities = 778/1098 (70%), Positives = 879/1098 (80%), Gaps = 24/1098 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
LA W+ LQ+EVAQYINSDVRGVP SMQ A+PL GF+QRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 325 LAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 384
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIEKLRQC++NGP KYPGA IRYPDG
Sbjct: 385 TVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDG 444
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
T L R + A ELK G IV+RHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 445 TARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 504
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 505 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLT 564
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFYDRAAFSLMC YMGD MD VDLPTPA++KP+ELWTGKQLFSVL+RP AN
Sbjct: 565 SSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHAN 624
Query: 2803 MRVYLNLTVLEKNYSKS-----------GETMCPNDGFVYFRNSELVCGQLGKATLGNGN 2657
MRVY+NLTV EK YS ETMCPNDGFVYFRNSEL+ GQLGKATLG
Sbjct: 625 MRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLG--- 681
Query: 2656 KDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEK 2477
CMNRLAKLSARWIGNHGFSIGIDDVQP+ L+ +K I +
Sbjct: 682 -------------------CMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISE 722
Query: 2476 GYEACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLI 2297
YE C+ I+ Y++G+L+L+PGCDAAQTLEA IT +LN IRE K CM L WRNSPLI
Sbjct: 723 NYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLI 782
Query: 2296 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFY 2117
MSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK+K PAAKGFVANSFY
Sbjct: 783 MSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFY 842
Query: 2116 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQ 1937
+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YD++VRN+ G ++Q
Sbjct: 843 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQ 902
Query: 1936 FHYGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDM 1757
F YGDDGMDPA MEGK+G PLN DRL +K+KATCP + LSP +V EIV +L+ +
Sbjct: 903 FLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQLAAYG- 961
Query: 1756 TPEGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQ 1577
+ CS+AF SL FF + + ++ E+ + S LE+V SG+T +
Sbjct: 962 --KESCSEAFLNSLRKFFEGQ---QDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEK 1016
Query: 1576 QLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPR 1397
QL+VF++TC SRYH+K+ GEPGTQMTLKTFHFAGVASMNIT GVPR
Sbjct: 1017 QLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1076
Query: 1396 IKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIV 1217
IKEIINGAK ISTPIITA LEC+++ +AR+VKG IEKT+LG+VAKS+KIV+TSR ASIV
Sbjct: 1077 IKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIV 1136
Query: 1216 VTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFE 1037
+ LDME IQ + L I+A VK+SI+Q P+ KLK QH+++L+ +KL I PP VD+SK+HFE
Sbjct: 1137 IALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPP-VDKSKIHFE 1195
Query: 1036 LHSYKAMLPKVIVKGISSVERAVI------------NKNKGKYNLLVEGKNLRAVMGTPG 893
L+S K +LP VIVKGI +VER VI N K KY LLVEG L+AVMG G
Sbjct: 1196 LYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEG 1255
Query: 892 VDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEV 713
+DGCKT SNHI EVQ+TLGIEAAR CIIDEI TM +HGMSID RHMMLLADLMT++GEV
Sbjct: 1256 IDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEV 1315
Query: 712 LGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGIL 533
LGITRFGIQKM +SVLMLASFEKTADHLFNA+ NGRDD+IEGVSECIIMGIPM +GTGIL
Sbjct: 1316 LGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGIL 1375
Query: 532 KVRQRIEQVPMLNY-APD 482
K+RQR PML Y APD
Sbjct: 1376 KIRQRDAVPPMLKYGAPD 1393
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 1493 bits (3866), Expect = 0.0
Identities = 764/1079 (70%), Positives = 872/1079 (80%), Gaps = 9/1079 (0%)
Frame = -1
Query: 3694 WDLLQIEVAQYINSDVRGVPSSMQPA--KPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRT 3521
W+LLQ +V+Q INS+ VP S QP K RGF+QRLKGKQGRFRGNLSGKRV++TGRT
Sbjct: 317 WELLQSQVSQLINSETP-VPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFTGRT 375
Query: 3520 VISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDGT 3341
VISPDPNLKITEVA+P+LMAQ+LTYPE+VS +NI+KLR + NG K+PGANFI +PDG
Sbjct: 376 VISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPGANFIIFPDGN 435
Query: 3340 MTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRF 3161
+L++ R+R A ELK+G IVERHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTLRF
Sbjct: 436 KLYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 495
Query: 3160 NESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 2981
NESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGV NNLCTPKNGEILVASTQDFLTS
Sbjct: 496 NESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPKNGEILVASTQDFLTS 555
Query: 2980 SFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSANM 2801
S+L TRKDTFYDRA F+ C YMGDA +++DLPTP++IKP+ELWTGKQLFSVLVRP+A
Sbjct: 556 SYLFTRKDTFYDRATFTQACVYMGDAAENIDLPTPSIIKPMELWTGKQLFSVLVRPNAKT 615
Query: 2800 RVYLNLTVLEKNYSKSGE--TMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGLFSVLLR 2627
RV++NL EKNY K +MCP DG+VYFRNSEL+CGQLGKATLGNGNKDGLF+VLLR
Sbjct: 616 RVFVNLVSYEKNYDKKANKGSMCPTDGYVYFRNSELICGQLGKATLGNGNKDGLFTVLLR 675
Query: 2626 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEACDKLIQ 2447
DY AAA CMNRLAKLSARWIGNHGFSIGIDDV P LNREK+ I KGY ACD+ IQ
Sbjct: 676 DYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPSDRLNREKEKQITKGYNACDQHIQ 735
Query: 2446 SYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQCGSKGSP 2267
Y KG+L+LQPGC+AAQTLE+ +TG LN IREA VC DELHWRNSPLIMS+CGSKGS
Sbjct: 736 LYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCKDELHWRNSPLIMSECGSKGSF 795
Query: 2266 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFF 2087
INISQM+ACVGQQSVGG+RAPNGFIDR+LPHFPR +TP KGFVANSFY+GL+ATEFFF
Sbjct: 796 INISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSFYSGLSATEFFF 855
Query: 2086 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYGDDGMDP 1907
HTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS YD TVRNSSGG++Q YGDDGMDP
Sbjct: 856 HTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGIVQLLYGDDGMDP 915
Query: 1906 AQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEGGCSDAF 1727
MEGK+G P NLDR+ +K KATCPS L P+E+ ++ N RL++ DMT E AF
Sbjct: 916 VYMEGKDGAPFNLDRMLMKTKATCPSYGQLGLPPTEIEKLFNERLTKPDMTSE--TVGAF 973
Query: 1726 KKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQ-----LQVF 1562
K SL F I +TR L L + + LE A ISG+TS+Q LQVF
Sbjct: 974 KTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQTLLESTATYISGLTSRQLEICLLQVF 1033
Query: 1561 LETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 1382
L+TCI RYH+K+ GEPGTQMTLKTFHFAGVASMNITLGVPRIKEII
Sbjct: 1034 LDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII 1093
Query: 1381 NGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVTLDM 1202
N +KNISTPIITA L ND K+ARIVKG IEKT LGEVAKS+K VL + A I V LDM
Sbjct: 1094 NASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRASQAIISVKLDM 1153
Query: 1201 ERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELHSYK 1022
+RI A QL I++ +V +I+Q P+ KLK ++ I++ KL + PP+ D+ KL+F LHS
Sbjct: 1154 KRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKGKLYFYLHSLC 1213
Query: 1021 AMLPKVIVKGISSVERAVINKNKGKYNLLVEGKNLRAVMGTPGVDGCKTTSNHIIEVQET 842
MLPKVIVKGI SVERAVINK KG YNLLVEG NL+AVMG GV+G T SNH+IE ++T
Sbjct: 1214 NMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNLKAVMGISGVNGKLTKSNHVIEAEQT 1273
Query: 841 LGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGEVLGITRFGIQKMKESVLM 662
LGIEAAR IIDEIQYTM SHGM+ID RHMMLLAD+MTYKGEVLGITRFGI KMK+SVLM
Sbjct: 1274 LGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGEVLGITRFGIAKMKDSVLM 1333
Query: 661 LASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGILKVRQRIEQVPMLNYAP 485
LASFEKT DHLF+AA +GR DKIEGVSECIIMGIPM IGTG+ K+RQ++E++P L+Y P
Sbjct: 1334 LASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKVEKLPKLSYGP 1392
>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Fragaria vesca subsp. vesca]
Length = 1390
Score = 1492 bits (3862), Expect = 0.0
Identities = 758/1090 (69%), Positives = 874/1090 (80%), Gaps = 24/1090 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQP-AKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 3527
L++W++LQ EVA YINSDVRGVP M AKPL G +QRLKGK GRFRGNL GKRVEYTG
Sbjct: 301 LSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGKRVEYTG 360
Query: 3526 RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPD 3347
RTVISPDPNLKITEV IPI MAQIL+YPERVS+HNIEKLR+CV NGP KYPGA ++ +
Sbjct: 361 RTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGALVLKCQN 420
Query: 3346 GTMTHLRYSARKRA-ADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRT 3170
G L+ ++ + AD LK G IV+RHLEDGDIVLFNRQPSLHRMSIM HRAR+MPWRT
Sbjct: 421 GEEWSLKAGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT 480
Query: 3169 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2990
LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+MLMGVQNNLCTPKNGEILVASTQDF
Sbjct: 481 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILVASTQDF 540
Query: 2989 LTSSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPS 2810
LTSSFLITRKDTFYDRA+FSLMCSYMGD +HVDLPTPA++KPIELWTGKQL+SVLVRP+
Sbjct: 541 LTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYSVLVRPN 600
Query: 2809 ANMRVYLNLTVLEKNYS-------KSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKD 2651
+N+RVYLNLTV EK+YS + E MCPNDGFVYFRNSEL+ GQLGK TLGNGNKD
Sbjct: 601 SNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTLGNGNKD 660
Query: 2650 GLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGY 2471
GLFSVLLRDY AHAAASCMNR+AKLSARWIGNHGFSIGI DVQP L EK+ I+KGY
Sbjct: 661 GLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEKIIKKGY 720
Query: 2470 EACDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMS 2291
+ CD I+ Y +GQL+L PGCDAAQ+LE+ IT VLN IR+ T K+CM LHWRNSPLIMS
Sbjct: 721 DKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRNSPLIMS 780
Query: 2290 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTG 2111
QCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPRK TPAAKGFVA+SFY+G
Sbjct: 781 QCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPAAKGFVASSFYSG 840
Query: 2110 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFH 1931
LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRL K LEDLS+ YD TVR ++GG++QF
Sbjct: 841 LTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKTVRAANGGIVQFC 900
Query: 1930 YGDDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTP 1751
YGDDGMDPA MEGK+G PL+ RL+ + KATCP+ +LSP EV EIV +RLS DMTP
Sbjct: 901 YGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRSRLSEQDMTP 960
Query: 1750 EGGCSDAFKKSLLDFFHKRITTMKNTRRLLQLDEEHVDKNNSVFLEKVAANISGVTSQQL 1571
+GGCS FK S+ F + + ++ T+ L++ + S L+ + NISGVT +QL
Sbjct: 961 DGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNIVQNISGVTPRQL 1020
Query: 1570 QVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNITLGVPRIK 1391
+VFL+TCISRYH KK GEPGTQMTLKTFHFAGVASMN+TLGVPRIK
Sbjct: 1021 KVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1080
Query: 1390 EIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSRHASIVVT 1211
EIINGAKNI TPIIT LECDN+ AR+V G IEKT LG+VA+ ++IV++ R A + V
Sbjct: 1081 EIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEIVMSPRAAYVEVK 1140
Query: 1210 LDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRSKLHFELH 1031
LDM IQ + L I A+ VKQSIL PR KLK +H+ + ++Q + +H DR KLHF L+
Sbjct: 1141 LDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSHEKDRRKLHFHLY 1200
Query: 1030 SYKAMLPKVIVKGISSVERAVINKNK---------------GKYNLLVEGKNLRAVMGTP 896
K++LP VIV+GI ++ER VI++ K KY L EGK L AVM T
Sbjct: 1201 YLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFAEGKGLLAVMSTK 1260
Query: 895 GVDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYKGE 716
GVDGCKTTSN IIEVQ+TLGIEAAR CII+EI+YTM SHGM+ID RHMMLLAD+MT++G
Sbjct: 1261 GVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRHMMLLADVMTFRGL 1320
Query: 715 VLGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGTGI 536
VLGITRFG+Q+M +SVLMLASFE+T DHLFNA+ G DKIEGVSE IIMGIPM IGTG+
Sbjct: 1321 VLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSESIIMGIPMPIGTGM 1380
Query: 535 LKVRQRIEQV 506
K++QR+ ++
Sbjct: 1381 FKIKQRLPEM 1390
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 1490 bits (3858), Expect = 0.0
Identities = 762/1088 (70%), Positives = 879/1088 (80%), Gaps = 26/1088 (2%)
Frame = -1
Query: 3703 LADWDLLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGR 3524
L WD LQ V YINSDVR +P MQ +PL GF+QRL GKQGRFR NL+GKRVE+TGR
Sbjct: 309 LIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGR 367
Query: 3523 TVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKLRQCVRNGPQKYPGANFIRYPDG 3344
TVISPDPNLKITEVAIPI MA+ILTYPERV++HNIEKLRQCV NG KYPGA + YPDG
Sbjct: 368 TVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDG 427
Query: 3343 TMTHLRYSARKRAADELKHGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLR 3164
+ L + RKR A+ELK G IV RHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLR
Sbjct: 428 SSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 487
Query: 3163 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2984
FNESVCNPYNADFDGDEMN+HVPQTEEARTEA +LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 488 FNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFLT 547
Query: 2983 SSFLITRKDTFYDRAAFSLMCSYMGDAMDHVDLPTPALIKPIELWTGKQLFSVLVRPSAN 2804
SSFLITRKDTFYDRAAFSLMCSYM D MD VDLPTP+++KPIELWTGKQLFSVL+RP AN
Sbjct: 548 SSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPHAN 607
Query: 2803 MRVYLNLTVLEKNYS-------KSGETMCPNDGFVYFRNSELVCGQLGKATLGNGNKDGL 2645
+RVY+NL + EKNYS K ETMCPNDG+VYFRNSEL+ GQLGKATLGNGNKDGL
Sbjct: 608 VRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKDGL 667
Query: 2644 FSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPRGNLNREKKYSIEKGYEA 2465
+S+LLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQP L EK +I GY
Sbjct: 668 YSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYRH 727
Query: 2464 CDKLIQSYDKGQLKLQPGCDAAQTLEAEITGVLNGIREATAKVCMDELHWRNSPLIMSQC 2285
C+KLI Y+ G+L L+ GCDA QTLE EIT LN +RE VCM ELHWRNSPLIMSQC
Sbjct: 728 CNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMSQC 787
Query: 2284 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLT 2105
GSKGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPRKSKTPAAKGFVANSFY+GL+
Sbjct: 788 GSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLS 847
Query: 2104 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDDTVRNSSGGVIQFHYG 1925
ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL + YD+TV+++ GG++QF YG
Sbjct: 848 ATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFLYG 907
Query: 1924 DDGMDPAQMEGKNGVPLNLDRLYLKIKATCPSSTHANLSPSEVLEIVNNRLSRHDMTPEG 1745
DDG+DPA MEGK GVPLN DRL++K+KATC + LSPS++ IV + L +H+ T +G
Sbjct: 908 DDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHNGTLDG 967
Query: 1744 GCSDAFKKSLLDFFHKRITTMKNTRRLLQ-LDEEHVDKNNSV--------FLEKVAANIS 1592
CS++F+KSL F + ++ +L+ ++ E+ + +V EK+A +S
Sbjct: 968 ICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKNTEKIAQKVS 1027
Query: 1591 GVTSQQLQVFLETCISRYHLKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNIT 1412
G+T +QL+VFL+TC+ RY K+ GEPGTQMTLKTFHFAGVASMNIT
Sbjct: 1028 GITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNIT 1087
Query: 1411 LGVPRIKEIINGAKNISTPIITATLECDNDVKSARIVKGCIEKTVLGEVAKSMKIVLTSR 1232
GVPRIKEIINGAK ISTPIIT LE +++V +ARI+KG I+KTVLG+VAKS+KIV+TSR
Sbjct: 1088 QGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSR 1147
Query: 1231 HASIVVTLDMERIQASQLRISAHSVKQSILQHPRTKLKPQHVEILNDQKLRIHPPNVDRS 1052
AS+ VTLDM+ I+ +QL + A+ V++ IL+ P+ K K Q + +L D KL + P DR+
Sbjct: 1148 SASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVFPGG-DRN 1206
Query: 1051 KLHFELHSYKAMLPKVIVKGISSVERAVINKNK----------GKYNLLVEGKNLRAVMG 902
KLHFELHS K MLP V+VKGI +VER VI + K KYN+ VEG L+AVMG
Sbjct: 1207 KLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMG 1266
Query: 901 TPGVDGCKTTSNHIIEVQETLGIEAARKCIIDEIQYTMASHGMSIDIRHMMLLADLMTYK 722
T GVDG KT SNHIIEVQETLGIEAARKCIIDEI+ TM SHGMSIDIRHMMLLAD+MT +
Sbjct: 1267 TEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSR 1326
Query: 721 GEVLGITRFGIQKMKESVLMLASFEKTADHLFNAACNGRDDKIEGVSECIIMGIPMQIGT 542
G VLGITRFGIQKM +SVLMLASFEKT+DHLFNA+ G+DDKIEGVSECIIMGIP+ IGT
Sbjct: 1327 GVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGT 1386
Query: 541 GILKVRQR 518
G+LK++QR
Sbjct: 1387 GVLKIQQR 1394