BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00013824
         (1457 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   627   0.0  
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   624   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   620   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   621   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   612   0.0  
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   600   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      607   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   598   0.0  
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   596   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   602   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   598   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   601   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   595   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       598   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   603   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   603   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       595   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      602   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   587   0.0  
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   592   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  627 bits (1617), Expect(2) = 0.0
 Identities = 316/408 (77%), Positives = 346/408 (84%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            REWMGNFR+IRNVAKYAAR GQSFSSS ETL+V   EI+  IPDVKIE   T+YVFSDGI
Sbjct: 487  REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGI 545

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GK+S+EFAR+VA KCG+K + PSAFQIRYGGYKGVVA DPTS KKLSLR SM KY SE T
Sbjct: 546  GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 605

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP FLNRQLI+LLSTLG+ D IFEKKQ+EAV QLD ILTDPL+AQEALE+
Sbjct: 606  KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 665

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRASKLLELR KTRIF PNGRSMMGCLD
Sbjct: 666  MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 725

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTL YGQVFVQ+S   +RQ H       +     ++  I+ G V+VAKNPCLHPGDVR
Sbjct: 726  ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR--SRQRFIVQGLVVVAKNPCLHPGDVR 783

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +Q  PMDY
Sbjct: 784  VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 843

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIANAHT FAD+EP KA
Sbjct: 844  TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKA 891



 Score =  111 bits (277), Expect(2) = 0.0
 Identities = 53/68 (77%), Positives = 58/68 (85%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L+VKE+PDFMEK DKPTYES  VIGKLFR VKDIAP  SCI+ FTKEVAR SYD DMEVD
Sbjct: 922  LYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVD 981

Query: 26   GLEDYIDE 3
            G ED+ID+
Sbjct: 982  GFEDHIDD 989


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  624 bits (1608), Expect(2) = 0.0
 Identities = 317/409 (77%), Positives = 350/409 (85%), Gaps = 1/409 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R  MG+F  IRNVAKYAAR GQSFSSS ETL V +HEI+  IPD++I RDGT YVFSDGI
Sbjct: 14   RSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIEIHRDGTTYVFSDGI 72

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+E A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY SENT
Sbjct: 73   GKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENT 132

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
            +LDVL+WSK++P FLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLRAQEALE+
Sbjct: 133  NLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALEL 192

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 193  MSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 252

Query: 735  ETRTLEYGQVFVQVSCVSHRQ-FHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDV 559
            ETRTLEYG+VFVQ+S    RQ F  +  F  + +  D  + I+ GKV+VAKNPCLHPGDV
Sbjct: 253  ETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNPCLHPGDV 310

Query: 558  RVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMD 379
            R+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP RQ+ PMD
Sbjct: 311  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 370

Query: 378  YTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            YTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE  KA
Sbjct: 371  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKA 419



 Score =  103 bits (256), Expect(2) = 0.0
 Identities = 48/66 (72%), Positives = 56/66 (84%)
 Frame = -1

Query: 206 LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
           LHVKE+PDFMEK +KPTYES  VIGKLFREVKD+AP    I+SFT++VA  SYD+DMEVD
Sbjct: 450 LHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQSYDADMEVD 509

Query: 26  GLEDYI 9
           G EDY+
Sbjct: 510 GFEDYV 515


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  620 bits (1600), Expect(2) = 0.0
 Identities = 315/409 (77%), Positives = 349/409 (85%), Gaps = 1/409 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R  MG+F  IRNVAKYAAR GQSFSSS ETL V +HEI+  IPD++  RDGT YVFSDGI
Sbjct: 470  RSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEI-IPDIETHRDGTTYVFSDGI 528

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+E A RVAIKCG K+STPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY SENT
Sbjct: 529  GKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENT 588

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
            +LDVL+WSK++P FLNRQLITLLSTLGV+D +FEKKQ+EAVDQLD IL DPLRAQEALE+
Sbjct: 589  NLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALEL 648

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 649  MSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 708

Query: 735  ETRTLEYGQVFVQVSCVSHRQ-FHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDV 559
            ETRTLEYG+VFVQ+S    RQ F  +  F  + +  D  + I+ GKV+VAKNPCLHPGDV
Sbjct: 709  ETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHD--NFILEGKVVVAKNPCLHPGDV 766

Query: 558  RVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMD 379
            R+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIP RQ+ PMD
Sbjct: 767  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 826

Query: 378  YTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            YTPA + +LDHDV IEEV+EYFTNYI ND LGIIANAHT FADKE  KA
Sbjct: 827  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKA 875



 Score =  102 bits (255), Expect(2) = 0.0
 Identities = 47/66 (71%), Positives = 56/66 (84%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            LHVKE+PDFMEK +KPTYES  VIGKLFREVKD+AP    ++SFT++VA  SYD+DMEVD
Sbjct: 906  LHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVD 965

Query: 26   GLEDYI 9
            G EDY+
Sbjct: 966  GFEDYV 971


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  621 bits (1601), Expect(2) = 0.0
 Identities = 312/408 (76%), Positives = 342/408 (83%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V + EI+  IPD++I +  T YVFSDGI
Sbjct: 472  RSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKGRTTYVFSDGI 530

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY S+NT
Sbjct: 531  GKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNT 590

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
            +LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+ AQEALE+
Sbjct: 591  NLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALEL 650

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 651  MSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 710

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYG+VFVQ+S    RQ   +    R        + I+ GK++VAKNPCLHPGDVR
Sbjct: 711  ETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNPCLHPGDVR 769

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP +Q+ PMDY
Sbjct: 770  VLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 829

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TPA + +LDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE  KA
Sbjct: 830  TPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKA 877



 Score =  101 bits (252), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L VKE+PDFMEK DKPTYES  VIGKLFREVKDIAP    I+SFT++VAR SYD DMEV 
Sbjct: 908  LRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVV 967

Query: 26   GLEDYIDE 3
            G EDY+ +
Sbjct: 968  GFEDYVSD 975


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  612 bits (1577), Expect(2) = 0.0
 Identities = 307/408 (75%), Positives = 341/408 (83%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVA+YAAR GQSF SS ETL+V  HEI+  IPD+++ R GT Y+FSDGI
Sbjct: 483  RAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEI-IPDIEVSRGGTRYLFSDGI 541

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFAR+VAIKCG K  TPSAFQIRY GYKGVVAVDPTS KKLSLR+SM KY SENT
Sbjct: 542  GKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENT 601

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL  SK+QP FLNRQLITLLSTLGV D  FE+KQ+EAVDQLD +LTDPLRAQEALE+
Sbjct: 602  KLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALEL 661

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR KTRIF PNGRSMMGCLD
Sbjct: 662  MSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 721

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLE+GQVFV+ S    R  + +            +  +I G V+VAKNPCLHPGD+R
Sbjct: 722  ETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR--GQCYLIKGSVVVAKNPCLHPGDLR 779

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            +L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +Q+ PMDY
Sbjct: 780  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TP   + LDHDVTIEEV+EYFTNYIVNDSLG+IANAHTA ADKE LKA
Sbjct: 840  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKA 887



 Score =  104 bits (259), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 56/68 (82%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L  +E+PDFMEK DKP+YES  VIGKLFREVKDIAP+ S I+SFT +VAR  YD DMEVD
Sbjct: 918  LRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVD 977

Query: 26   GLEDYIDE 3
            G EDYID+
Sbjct: 978  GFEDYIDD 985


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  600 bits (1548), Expect(2) = 0.0
 Identities = 305/408 (74%), Positives = 335/408 (82%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V + EI+  IPD++I +  T YVFSDGI
Sbjct: 14   RSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIEN-IPDIEIHKXRTTYVFSDGI 72

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS + A RVAIKCG KSSTPSAFQIRYGGYKGVVAVDPTS +KLSLRKSM KY S+NT
Sbjct: 73   GKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNT 132

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
            +LDVL WSK+QP FLNRQLITLLSTLGV+D +FEKKQ+ AVDQLD IL DP+ AQEALE+
Sbjct: 133  NLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALEL 192

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA+KLLELR KTRIF PNGRSMMGCLD
Sbjct: 193  MSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLD 252

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYG+VFVQ+S    RQ   +    R        + I+ GK++VAKNPCLHPGDVR
Sbjct: 253  ETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS-HHDNFILEGKIVVAKNPCLHPGDVR 311

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL AVNVP L HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +LIP +Q+ PMDY
Sbjct: 312  VLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 371

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TPA +         +EV+EYFTNYIVNDSLGIIANAHT FADKE  KA
Sbjct: 372  TPAPT---------KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKA 410



 Score =  101 bits (252), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = -1

Query: 206 LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
           L VKE+PDFMEK DKPTYES  VIGKLFREVKDIAP    I+SFT++VAR SYD DMEV 
Sbjct: 441 LRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVV 500

Query: 26  GLEDYIDE 3
           G EDY+ +
Sbjct: 501 GFEDYVSD 508


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  607 bits (1565), Expect(2) = 0.0
 Identities = 304/408 (74%), Positives = 337/408 (82%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+  IPD++I +DG +YVFSDGI
Sbjct: 476  RSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKYVFSDGI 534

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFA++VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY SENT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP FLNRQLITLLSTLGV DR FEKKQ+E VDQL+ +LTDPL AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTL YGQVFVQ S                     +R  I+ GKVIVAKNPCLHPGDVR
Sbjct: 715  ETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHPGDVR 757

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +Q+ PMDY
Sbjct: 758  VLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDY 817

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            +PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA
Sbjct: 818  SPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKA 865



 Score = 94.4 bits (233), Expect(2) = 0.0
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L VKE+PDFMEK DKP+Y+SH VIGKLFREVK++AP    IK  T+E  +  YD DMEV+
Sbjct: 896  LRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVE 955

Query: 26   GLEDYIDE 3
            G EDYID+
Sbjct: 956  GFEDYIDD 963


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  598 bits (1543), Expect(2) = 0.0
 Identities = 301/407 (73%), Positives = 340/407 (83%), Gaps = 2/407 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+  IPDVK+   GT YVFSDGI
Sbjct: 472  RAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEV-IPDVKVH--GTSYVFSDGI 528

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS +FA RVA KCG++  TPSAFQIRYGGYKGVV VDP S  KLSLRKSMSKY S+N 
Sbjct: 529  GKISGDFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNI 587

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQLITLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 588  KLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALEL 647

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LK ML CGYKPDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 648  MSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLD 707

Query: 735  ETRTLEYGQVFVQVSCVSHRQF--HVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGD 562
            E+RTLEYGQVFVQ +   H +F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 708  ESRTLEYGQVFVQFTGAGHGEFSDDLHPF---NNSRSTNSNFILKGNVVVAKNPCLHPGD 764

Query: 561  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 382
            +RVL+AVNV AL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 765  IRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 824

Query: 381  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP
Sbjct: 825  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREP 871



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 57/68 (83%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L  KE+PDFM+K DK +Y S RVIGKLFR+VKD APQAS I +FT++VAR SYD+DMEVD
Sbjct: 905  LRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVD 964

Query: 26   GLEDYIDE 3
            G EDYIDE
Sbjct: 965  GFEDYIDE 972


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  596 bits (1536), Expect(2) = 0.0
 Identities = 305/408 (74%), Positives = 332/408 (81%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   GT YVFSDGI
Sbjct: 471  RAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLGTRYVFSDGI 529

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFARRVA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKSMSK+ SENT
Sbjct: 530  GKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 589

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP ++NRQLITLLSTLG++D +FEKKQ+E VD+LD ILTDPL A EAL +
Sbjct: 590  KLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLDAILTDPLEAHEALGL 649

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF   GRSMMGCLD
Sbjct: 650  MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 709

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYGQV VQ S                +     R  IITG V+VAKNPCLHPGDVR
Sbjct: 710  ETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 753

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP R  +PMDY
Sbjct: 754  VLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDY 813

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA
Sbjct: 814  TPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKA 861



 Score =  102 bits (255), Expect(2) = 0.0
 Identities = 50/68 (73%), Positives = 55/68 (80%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            LHVKE+PDFMEK DKPTYES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVD
Sbjct: 892  LHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVD 951

Query: 26   GLEDYIDE 3
            G E+Y+DE
Sbjct: 952  GFEEYVDE 959


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  602 bits (1552), Expect(2) = 0.0
 Identities = 304/408 (74%), Positives = 337/408 (82%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG F  IRNVAKYAAR GQSFSSS ETL+V + EI+  I DV+I+RDG  YVFSDGI
Sbjct: 476  RTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEI-IDDVEIKRDGINYVFSDGI 534

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FA++VA KC +   TPSAFQIR GG+KGVVAVDPTS KKLSLR SMSKY SENT
Sbjct: 535  GKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENT 594

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP FLNRQLITLLSTLGV D  FE+KQ+E VDQL+ ILTDPL+AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALEL 654

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRASKLLELR K+RIF  NGRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLD 714

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTL+YGQVFVQVS                     ++  I+ GKV+VAKNPCLHPGDVR
Sbjct: 715  ETRTLDYGQVFVQVS-----------------GSRSEQRFIVQGKVVVAKNPCLHPGDVR 757

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPELIP +Q+ PMDY
Sbjct: 758  VLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDY 817

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            +PA +  L+H+VTIEEV+EYFTNYIVNDSLGIIANAHT FAD+EP KA
Sbjct: 818  SPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 865



 Score = 96.3 bits (238), Expect(2) = 0.0
 Identities = 45/68 (66%), Positives = 53/68 (77%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L VKE+PDFMEK DKPTY+S+ VIGKLFREVKD+AP    I+S T+E     YD DMEVD
Sbjct: 896  LRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVD 955

Query: 26   GLEDYIDE 3
            G EDY+D+
Sbjct: 956  GYEDYVDD 963


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  598 bits (1541), Expect(2) = 0.0
 Identities = 307/408 (75%), Positives = 332/408 (81%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   GT YVFSDGI
Sbjct: 481  RAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLGTRYVFSDGI 539

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFARRVA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKSMSK+ SENT
Sbjct: 540  GKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 599

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP ++NRQLITLLSTLGVED +FEKKQ+E VD+LD ILTDPL A EAL +
Sbjct: 600  KLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGL 659

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF   GRSMMGCLD
Sbjct: 660  MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 719

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYGQV VQ S                +     R  IITG V+VAKNPCLHPGDVR
Sbjct: 720  ETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 763

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP R  +PMDY
Sbjct: 764  VLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDY 823

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA
Sbjct: 824  TPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKA 871



 Score =  100 bits (249), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L+VKE+PDFMEK DKPTYES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVD
Sbjct: 902  LYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVD 961

Query: 26   GLEDYIDE 3
            G E+Y+DE
Sbjct: 962  GFEEYVDE 969


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  601 bits (1550), Expect(2) = 0.0
 Identities = 300/407 (73%), Positives = 339/407 (83%), Gaps = 2/407 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG F+ IRNVAKYAAR GQSF SS ETL+V RHE++  IPDV     GT Y+FSDGI
Sbjct: 473  RTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVVCSLHGTNYIFSDGI 531

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FARRVA+KCG++  TPS FQIRYGGYKGVVAVDP S  KLSLR SM KY S N 
Sbjct: 532  GKISADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNI 590

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQL+TLLSTLGV+D +FE+KQ EAVDQLD IL D L+AQEALE+
Sbjct: 591  KLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALEL 650

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR ++RIF PNGR+MMGCLD
Sbjct: 651  MSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLD 710

Query: 735  ETRTLEYGQVFVQVSCVSHRQFH--VNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGD 562
            E+RTLEYGQVFVQ +    RQF+   +PF   N++       I+ G V+VAKNPCLHPGD
Sbjct: 711  ESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDSGSTNCDFILEGNVVVAKNPCLHPGD 767

Query: 561  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 382
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+L+P RQ +PM
Sbjct: 768  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPM 827

Query: 381  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            DYTPA S  LDHDVTIEEV+EYFTNYIVNDSLGIIANAH  FAD+EP
Sbjct: 828  DYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREP 874



 Score = 96.7 bits (239), Expect(2) = 0.0
 Identities = 47/68 (69%), Positives = 54/68 (79%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L  KE+PDFMEK DKPTY S +VIGKLF++VKD  PQAS I +FT +VAR SYD DM V+
Sbjct: 908  LRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVN 967

Query: 26   GLEDYIDE 3
            G EDYIDE
Sbjct: 968  GFEDYIDE 975


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  595 bits (1533), Expect(2) = 0.0
 Identities = 305/408 (74%), Positives = 332/408 (81%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   GT YVFSDGI
Sbjct: 481  RAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLGTRYVFSDGI 539

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFARRVA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKSMSK+ SENT
Sbjct: 540  GKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 599

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP ++NRQLITLLSTLGV+D +F+KKQ+E VD+LD ILTDPL A EAL +
Sbjct: 600  KLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALGL 659

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF   GRSMMGCLD
Sbjct: 660  MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 719

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYGQV VQ S                +     R  IITG V+VAKNPCLHPGDVR
Sbjct: 720  ETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 763

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP R  +PMDY
Sbjct: 764  VLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDY 823

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA
Sbjct: 824  TPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKA 871



 Score =  102 bits (255), Expect(2) = 0.0
 Identities = 50/68 (73%), Positives = 55/68 (80%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            LHVKE+PDFMEK DKPTYES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVD
Sbjct: 902  LHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVD 961

Query: 26   GLEDYIDE 3
            G E+Y+DE
Sbjct: 962  GFEEYVDE 969


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  598 bits (1542), Expect(2) = 0.0
 Identities = 301/407 (73%), Positives = 337/407 (82%), Gaps = 2/407 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+FR IRNVAKYAAR GQSF SS ETL+V RHE++  IPDV     GT Y+FSDGI
Sbjct: 472  RTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV-IPDVACSLHGTNYIFSDGI 530

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FA RV IKCG++  TPS+FQIRYGGYKGVVAVDP S  KLSLRKSM KY S N 
Sbjct: 531  GKISADFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNI 589

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQL+TLLSTLGV D + E+KQ EAVDQLD IL D L+AQEALE+
Sbjct: 590  KLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALEL 649

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF PNGR+MMGCLD
Sbjct: 650  MSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLD 709

Query: 735  ETRTLEYGQVFVQVSCVSHRQF--HVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGD 562
            E+RTLEYGQVFVQ S    RQF    +PF   N++       I+ G V+VAKNPCLHPGD
Sbjct: 710  ESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDSGSANCDFILKGNVVVAKNPCLHPGD 766

Query: 561  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 382
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+LIP RQV+ M
Sbjct: 767  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSM 826

Query: 381  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            DYTPA +  LDHDVTIEEV+EYFTNYI+NDSLGIIANAH  FAD+EP
Sbjct: 827  DYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREP 873



 Score = 99.0 bits (245), Expect(2) = 0.0
 Identities = 48/68 (70%), Positives = 56/68 (82%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L  KE+PDFMEK DKPTY S +VIGKLF++VK+  PQAS I +FT++VAR SYDSDM VD
Sbjct: 907  LRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVD 966

Query: 26   GLEDYIDE 3
            G EDYIDE
Sbjct: 967  GFEDYIDE 974


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  603 bits (1555), Expect(2) = 0.0
 Identities = 303/407 (74%), Positives = 344/407 (84%), Gaps = 2/407 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+  IPDVK+   GT YVFSDGI
Sbjct: 320  RTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEV-IPDVKVH--GTSYVFSDGI 376

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FARRVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 377  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 435

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQLITLLSTLGV+D + E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 436  KLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALEL 495

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR K+RIF PNGR+MMGCLD
Sbjct: 496  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLD 555

Query: 735  ETRTLEYGQVFVQVSCVSHRQF--HVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGD 562
            E+RTLEYGQVFVQ +   HR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 556  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 612

Query: 561  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 382
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 613  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 672

Query: 381  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII+NAH  FAD+EP
Sbjct: 673  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREP 719



 Score = 93.2 bits (230), Expect(2) = 0.0
 Identities = 48/69 (69%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
 Frame = -1

Query: 206 LHVKEFPDFMEKL-DKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEV 30
           L  KE+PDFM+K  DK TY S RVIGKLFR+VKD APQAS    FT++VAR SYD+D+EV
Sbjct: 753 LRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEV 812

Query: 29  DGLEDYIDE 3
           DG EDYIDE
Sbjct: 813 DGFEDYIDE 821


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  603 bits (1555), Expect(2) = 0.0
 Identities = 304/407 (74%), Positives = 344/407 (84%), Gaps = 2/407 (0%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  I+NVAKYAAR GQSF SS ETL+V RHEI+  IPDVK+   GT YVFSDGI
Sbjct: 471  RTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEV-IPDVKVH--GTSYVFSDGI 527

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FARRVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSMSKY S+N 
Sbjct: 528  GKISADFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 586

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQLITLLSTLGV+D I E+KQKEAVDQLD IL D L+AQEALE+
Sbjct: 587  KLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALEL 646

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRASKLL+LR K+RIF PNGR+MMGCLD
Sbjct: 647  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLD 706

Query: 735  ETRTLEYGQVFVQVSCVSHRQF--HVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGD 562
            E+RTLEYGQVFVQ +   HR+F   ++PF   N +     + I+ G V+VAKNPCLHPGD
Sbjct: 707  ESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNSRSTNCNFILKGNVVVAKNPCLHPGD 763

Query: 561  VRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPM 382
            +RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD ++IP RQV+PM
Sbjct: 764  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPM 823

Query: 381  DYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            +Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII+NAH  FAD+EP
Sbjct: 824  EYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREP 870



 Score = 91.3 bits (225), Expect(2) = 0.0
 Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
 Frame = -1

Query: 197  KEFPDFMEKL-DKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVDGL 21
            KE+PDFM+K  DK TY S RVIGKL+R+VKD APQAS    FT++VAR SYD+D+EVDG 
Sbjct: 907  KEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGF 966

Query: 20   EDYIDE 3
            EDYIDE
Sbjct: 967  EDYIDE 972


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  595 bits (1534), Expect(2) = 0.0
 Identities = 298/405 (73%), Positives = 339/405 (83%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F+ IRNVAKYAAR GQSF SS ETL+V RHEI   IPDV++   GT YVFSDGI
Sbjct: 165  RTWMGDFQQIRNVAKYAARLGQSFGSSRETLSVGRHEIKY-IPDVEVH--GTNYVFSDGI 221

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS++FA RVA KCG++  TPSAFQIRYGGYKGVVAVDP S  KLSLRKSM KY S NT
Sbjct: 222  GKISADFAHRVAKKCGLQH-TPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNT 280

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP +LNRQL+TL+STLGV+D +F++KQ EAV QLD IL D L+AQEAL++
Sbjct: 281  KLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDL 340

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRASKLL+LR +TRIF P GRSMMGCLD
Sbjct: 341  MSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLD 400

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            E+RTLEYGQVFVQ +    RQF+       N++     + I+ G V+VAKNPCLHPGD+R
Sbjct: 401  ESRTLEYGQVFVQFTGAGGRQFYEESHHF-NDSGSANYNFILKGNVVVAKNPCLHPGDIR 459

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WDP+LIP RQV+PMDY
Sbjct: 460  VLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDY 519

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEP 241
            TPA S+ LDHDVTIEEV+EYFTNY+VND LG+IANAH  FAD+EP
Sbjct: 520  TPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREP 564



 Score = 99.0 bits (245), Expect(2) = 0.0
 Identities = 48/68 (70%), Positives = 55/68 (80%)
 Frame = -1

Query: 206 LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
           L  KE+PDFMEK DK TY S +VIGKLFREVKD   QAS I +FT++VAR SYD+D+EVD
Sbjct: 598 LRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVD 657

Query: 26  GLEDYIDE 3
           G EDYIDE
Sbjct: 658 GFEDYIDE 665


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  602 bits (1553), Expect(2) = 0.0
 Identities = 302/408 (74%), Positives = 335/408 (82%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMGNF  IRNVAKYAAR GQSFSSS ETL+V + EI+  IPD++I +DG +YVF DGI
Sbjct: 476  RSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINL-IPDIEIMKDGIKYVFPDGI 534

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFA++VA KC +K  TPSAFQIR GG+KGVVA+DPTS  KLSLRKSM KY SENT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP FLNRQLITLLSTLGV D  FEKKQ+E VDQL+ +LTDPL AQEALE+
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRASKLLELR K RIF   GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTL YGQVFVQ S                     +R  I+ GKVIVAKNPCLHPGDVR
Sbjct: 715  ETRTLNYGQVFVQFS-----------------GSRSERRFIVQGKVIVAKNPCLHPGDVR 757

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL+AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPELIP +Q+ PMDY
Sbjct: 758  VLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDY 817

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            +PA +  LDH+VTIEE++EYFTNYIVNDSLGII+NAHTAFAD+EP KA
Sbjct: 818  SPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKA 865



 Score = 90.9 bits (224), Expect(2) = 0.0
 Identities = 43/68 (63%), Positives = 52/68 (76%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L VKEFPDFMEK DKP+Y+S+ VIGKLFREVK++AP    IK  T+E  +  YD DMEV+
Sbjct: 896  LRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVE 955

Query: 26   GLEDYIDE 3
            G  DYID+
Sbjct: 956  GFVDYIDD 963


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  587 bits (1513), Expect(2) = 0.0
 Identities = 294/408 (72%), Positives = 340/408 (83%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            REWMG+F  IRNVAKYAAR GQSF SS ETL+V + EI+  I DVK   +GTEY FSDGI
Sbjct: 473  REWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEE-IQDVK---NGTEYTFSDGI 528

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS +FAR+VA KCG++SSTPSAFQIRYGGYKGVVAVDP+S KKLSLR SM KY+S+NT
Sbjct: 529  GKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQSDNT 588

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP FLNRQ+ITLLSTLGV+D +FEK+Q+EAV QLD +L DP+RAQEAL++
Sbjct: 589  KLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQEALDL 648

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            MSPGEN ++LKEMLKCGY+PD EPFLSMMLQTFRASKLL+LR K R+F P  R MMGCLD
Sbjct: 649  MSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMMGCLD 708

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ET  L+YGQVFV+ S    R    + +   + +  ++R   + GKV+VAKNPCLHPGDVR
Sbjct: 709  ETGILKYGQVFVRYSGAVKRGLFDDSY---DNSTANERFDPVRGKVVVAKNPCLHPGDVR 765

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VL AV+VP L+HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFV WD +LIP +QV+PMDY
Sbjct: 766  VLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVEPMDY 825

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
             PA +  LDHDVTIEEV++YFTNYIVNDSLGIIANAHT FADKEPL A
Sbjct: 826  NPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMA 873



 Score =  106 bits (264), Expect(2) = 0.0
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L VKE+PDFMEK DK  Y S RVIGKLFREVKDIAPQ S  +SFTKEVAR SYD DMEVD
Sbjct: 904  LRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARRSYDPDMEVD 963

Query: 26   GLEDYIDE 3
            G ED+IDE
Sbjct: 964  GFEDHIDE 971


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  592 bits (1527), Expect(2) = 0.0
 Identities = 304/408 (74%), Positives = 330/408 (80%)
 Frame = -3

Query: 1455 REWMGNFRDIRNVAKYAARQGQSFSSSMETLTVFRHEIDTTIPDVKIERDGTEYVFSDGI 1276
            R WMG+F  IRNVAKYAAR GQSFSSS ETL V   EI+  IPDV+I   GT YVFSDGI
Sbjct: 480  RAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV-IPDVEIISLGTRYVFSDGI 538

Query: 1275 GKISSEFARRVAIKCGMKSSTPSAFQIRYGGYKGVVAVDPTSVKKLSLRKSMSKYRSENT 1096
            GKIS+EFAR+VA KCG+   +PSAFQIRYGGYKGVVAVDP S KKLSLRKSMSK+ SENT
Sbjct: 539  GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 598

Query: 1095 SLDVLTWSKFQPGFLNRQLITLLSTLGVEDRIFEKKQKEAVDQLDMILTDPLRAQEALEV 916
             LDVL WSK+QP ++NRQLITLLSTLGV D +FEKKQ+E VD+LD ILT PL A EAL +
Sbjct: 599  KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 658

Query: 915  MSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRASKLLELRNKTRIFEPNGRSMMGCLD 736
            M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRASKLLELR KTRIF   GRSMMGCLD
Sbjct: 659  MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 718

Query: 735  ETRTLEYGQVFVQVSCVSHRQFHVNPFFIRNENELDQRSLIITGKVIVAKNPCLHPGDVR 556
            ETRTLEYGQV VQ S                +     R  IITG V+VAKNPCLHPGDVR
Sbjct: 719  ETRTLEYGQVVVQYS----------------DPMRPGRRFIITGPVVVAKNPCLHPGDVR 762

Query: 555  VLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELIPRRQVKPMDY 376
            VLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P R  +PMDY
Sbjct: 763  VLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDY 822

Query: 375  TPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPLKA 232
            TP  + +LDHDVTIEEV+EYF NYIVNDSLGIIANAHTAFADKEPLKA
Sbjct: 823  TPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKA 870



 Score =  100 bits (250), Expect(2) = 0.0
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = -1

Query: 206  LHVKEFPDFMEKLDKPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARISYDSDMEVD 27
            L+VKE+PDFMEK DKPTYES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVD
Sbjct: 901  LYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVD 960

Query: 26   GLEDYIDE 3
            G E+Y+DE
Sbjct: 961  GFEEYVDE 968