BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00012319
         (735 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]              290   5e-76
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   290   5e-76
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   276   4e-72
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...   276   7e-72
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   272   1e-70
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   270   3e-70
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   270   3e-70
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   270   4e-70
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   270   4e-70
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...   269   7e-70
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   268   1e-69
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   265   9e-69
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   263   5e-68
ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Popu...   262   8e-68
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   259   9e-67
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   259   9e-67
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   259   9e-67
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   259   9e-67
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   259   9e-67
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   258   2e-66

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  290 bits (741), Expect = 5e-76
 Identities = 151/221 (68%), Positives = 172/221 (77%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------- 141
            V+AKG  FEVHFRFTNEPHILLAQIAQK A KVYI+ SG I+ C VI             
Sbjct: 1448 VKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRD 1507

Query: 142  --KHDN------RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
              K +N      +  PALQTAGV+F AFW MQD+LD+R + SN++HA+L TFGVEAARAT
Sbjct: 1508 PKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARAT 1567

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            IIKEV NVF  YG+ V+IRHLSLIADFMTHSGGYRPM+R+ G+A S SPFSKM+FETAS 
Sbjct: 1568 IIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASK 1627

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAA HG  D+LES SARICLGLPVKMGTGCFDLMQK++
Sbjct: 1628 FIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  290 bits (741), Expect = 5e-76
 Identities = 151/221 (68%), Positives = 172/221 (77%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------- 141
            V+AKG  FEVHFRFTNEPHILLAQIAQK A KVYI+ SG I+ C VI             
Sbjct: 1519 VKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRD 1578

Query: 142  --KHDN------RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
              K +N      +  PALQTAGV+F AFW MQD+LD+R + SN++HA+L TFGVEAARAT
Sbjct: 1579 PKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARAT 1638

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            IIKEV NVF  YG+ V+IRHLSLIADFMTHSGGYRPM+R+ G+A S SPFSKM+FETAS 
Sbjct: 1639 IIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASK 1698

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAA HG  D+LES SARICLGLPVKMGTGCFDLMQK++
Sbjct: 1699 FIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  276 bits (707), Expect = 4e-72
 Identities = 145/221 (65%), Positives = 170/221 (76%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSV-------------- 138
            VEA+ + FEVHF+FTNEPHILLA+IAQKTAKKVYI+  G IEQC V              
Sbjct: 1465 VEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKD 1524

Query: 139  ------IKHDNRD-TPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                  +K D ++  PAL   GV+F  FW MQD LD+R I SN+IHA+L+T+GVEAAR T
Sbjct: 1525 PKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARET 1584

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ +VF+ YGI+V  RHLSLIADFMTH+GGYRPMSR  G+A S SPFSKMSFETAS 
Sbjct: 1585 IIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASK 1644

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAA HGE+D+LE+PSARICLGLPVKMGTG FDLMQKL+
Sbjct: 1645 FIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLE 1685


>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score =  276 bits (705), Expect = 7e-72
 Identities = 142/221 (64%), Positives = 168/221 (76%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK------------ 144
            VEAKG  F+VHFRF+NE HILLAQIAQ TA +VYI+ SG ++ C  I             
Sbjct: 1549 VEAKGFYFKVHFRFSNEAHILLAQIAQNTATRVYIQSSGKVDNCQQITCKENQVIYYGKD 1608

Query: 145  ---------HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                      +  + PALQT+GV+F  FW +QD LD+R I SNDIHA+L T+GVEAAR T
Sbjct: 1609 PKSRDDIPLEEKENIPALQTSGVDFMTFWKLQDILDVRYIYSNDIHAMLNTYGVEAARET 1668

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ NVF+ YGISV+IRHL+LIADFMTH+GGYR MSR+ G+A S SPFSKM FETAS 
Sbjct: 1669 IIREITNVFKSYGISVNIRHLTLIADFMTHTGGYRSMSRHGGIADSISPFSKMCFETASK 1728

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAAYH E+DDLE+PSARICLGLPVK+GTGCFDLMQKL+
Sbjct: 1729 FIVEAAYHREMDDLETPSARICLGLPVKVGTGCFDLMQKLE 1769


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  272 bits (695), Expect = 1e-70
 Identities = 139/222 (62%), Positives = 168/222 (75%), Gaps = 23/222 (10%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFT-NEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDN-------- 153
            V AKG  FEVHFRF  NEPHILL+QIAQKTA+KVYI+RSG +  C  I  D         
Sbjct: 1385 VSAKGFHFEVHFRFADNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGK 1444

Query: 154  -------------RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARA 294
                         ++ PALQT G++F  FW +QD LD+R I SN+IHA+L T+GVEAAR 
Sbjct: 1445 DPENKQSFSSKEKKEMPALQTTGIDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARE 1504

Query: 295  TIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYGMAV-STSPFSKMSFETAS 471
            TII+E+ NVF+ YGISV+IRHL+LIADFMTH+GGYRP++R+G  V S SPF+KM+FETAS
Sbjct: 1505 TIIREINNVFKSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETAS 1564

Query: 472  TFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
             FIVEAAYHG+VD LE+PSARICLGLPV +GTGCFDLM K++
Sbjct: 1565 KFIVEAAYHGQVDRLETPSARICLGLPVNVGTGCFDLMHKME 1606


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  270 bits (691), Expect = 3e-70
 Identities = 137/221 (61%), Positives = 164/221 (74%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK------------ 144
            VEAKG  FE+HFRFT EPHILL QIAQ+TAKKV I+  G + +C  I             
Sbjct: 1430 VEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKD 1489

Query: 145  ---------HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                      +    PALQT+GV+F  FW ++DDLD+R I SN++HA+L  +GVEAAR T
Sbjct: 1490 GRKRIEISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARET 1549

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETAST 474
            II+EV NVF+ YGISV+IRHL+LIADFMTH+G YRPM+R G +A STSPF KM FETA  
Sbjct: 1550 IIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGN 1609

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAAYHG+VD+LE+PSARICLGLPVKMGTGC DL+QKL+
Sbjct: 1610 FIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLE 1650


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  270 bits (691), Expect = 3e-70
 Identities = 136/219 (62%), Positives = 166/219 (75%), Gaps = 21/219 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDNRDTP----- 165
            V+ +GL FEVHFRF NEPHILLAQ+AQKTAKKVYIK SG I+QC ++K++  +       
Sbjct: 1455 VDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDE 1514

Query: 166  ---------------ALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATI 300
                           AL+ AGV+F  FW MQDDLD+  I +N+I A+L T+GVEAARA+I
Sbjct: 1515 YQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASI 1574

Query: 301  IKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTF 477
            ++EV  VF  YG+ +D RHLSLIADFMTH+GGY+PMSR+G ++ S SPF KMSFETAS F
Sbjct: 1575 LREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKF 1634

Query: 478  IVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKL 594
            IVEAA HG  D+LE+PS+RICLGLPVKMGTGCFD+MQKL
Sbjct: 1635 IVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKL 1673


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  270 bits (690), Expect = 4e-70
 Identities = 140/221 (63%), Positives = 168/221 (76%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCS--------VIKHDNR 156
            VEAK   FEVHF+FTNEPH LL+QI Q+ A+KV I+RSG I QC         VI H N 
Sbjct: 1431 VEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNN 1490

Query: 157  -------------DTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                           PALQT+GV+F   W MQD+LD+R I SNDIHA+L+T+GVEAARAT
Sbjct: 1491 LKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARAT 1550

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ N+F  YGISV+IRHLSL+AD+MTHSGGYRPMSR  G++ S SPFS+M+FETA  
Sbjct: 1551 IIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGK 1610

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIV+AA HGEVD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1611 FIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  270 bits (690), Expect = 4e-70
 Identities = 140/221 (63%), Positives = 168/221 (76%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCS--------VIKHDNR 156
            VEAK   FEVHF+FTNEPH LL+QI Q+ A+KV I+RSG I QC         VI H N 
Sbjct: 1429 VEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNN 1488

Query: 157  -------------DTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                           PALQT+GV+F   W MQD+LD+R I SNDIHA+L+T+GVEAARAT
Sbjct: 1489 LKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARAT 1548

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ N+F  YGISV+IRHLSL+AD+MTHSGGYRPMSR  G++ S SPFS+M+FETA  
Sbjct: 1549 IIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGK 1608

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIV+AA HGEVD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1609 FIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score =  269 bits (688), Expect = 7e-70
 Identities = 139/226 (61%), Positives = 163/226 (72%), Gaps = 27/226 (11%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------- 141
            V AKG  FE+HF+FTNEPHILL QIAQKTA+ VY+K SGNI  C  I             
Sbjct: 1447 VSAKGFHFEIHFKFTNEPHILLDQIAQKTARNVYVKSSGNILDCQDIDIYGNEDQVFCCW 1506

Query: 142  -------------KHDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVE 282
                           + +   ALQTAGV+F   W +QDDLD+  I SN+IHA+L T+GVE
Sbjct: 1507 NDPRNKLSGEKNPSEEEKKMRALQTAGVDFATLWKLQDDLDVNYIYSNNIHAMLNTYGVE 1566

Query: 283  AARATIIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSF 459
            AAR TIIKE+ NVF+ YGISV+IRHL LIAD+MT SG YRPM+R+ G+A STSP +KMSF
Sbjct: 1567 AARETIIKEISNVFKVYGISVNIRHLLLIADYMTRSGSYRPMNRFGGIAESTSPMNKMSF 1626

Query: 460  ETASTFIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            ETAS FI EAAYHGE DDLE+PSARICLGLPVK+GTGCFDLM K++
Sbjct: 1627 ETASKFIQEAAYHGEKDDLETPSARICLGLPVKVGTGCFDLMHKME 1672


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  268 bits (686), Expect = 1e-69
 Identities = 134/219 (61%), Positives = 166/219 (75%), Gaps = 21/219 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIKHDNRDTP----- 165
            V+ +GL FEVHFRF NEPHILLAQ+AQKTAKKVY+K SG I+QC ++K++  +       
Sbjct: 1457 VDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDE 1516

Query: 166  ---------------ALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATI 300
                           AL+ AGV+F  FW MQDDLD+  I +N+I A+L T+GVEAARA+I
Sbjct: 1517 NQTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASI 1576

Query: 301  IKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTF 477
            ++EV  VF  YG+ +D RHLSLIADFMTH+GGY+PMSR+G ++ S SPF KMSFETAS F
Sbjct: 1577 LREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKF 1636

Query: 478  IVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKL 594
            IVEAA HG  D+LE+PS+RICLGLPVKMGTGCFD+MQ+L
Sbjct: 1637 IVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQEL 1675


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  265 bits (678), Expect = 9e-69
 Identities = 135/221 (61%), Positives = 168/221 (76%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------- 141
            V+AKG+ F++HF+FT EP ILLA+IA ++AKKV I+ SG + +C  +             
Sbjct: 1416 VKAKGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGED 1475

Query: 142  --KHDN------RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
              K D+         PALQT+GV+F  FW +QDDLD+R I SN++HA+L  +GVEAAR T
Sbjct: 1476 SRKRDDIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARET 1535

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETAST 474
            II+EV NVF+ YGISV+IRHL+LIADFMTHSGGYRPM+R G +A  TSPF KM FETAS 
Sbjct: 1536 IIREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASK 1595

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAAYHG+VD+LE+PS+RICLGLPVKMGTGC DL+QKL+
Sbjct: 1596 FIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  263 bits (672), Expect = 5e-68
 Identities = 131/220 (59%), Positives = 164/220 (74%), Gaps = 21/220 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVI------------- 141
            V+A G+ FE+HF+F  EPHILLAQIAQ+TA+KV I+  G + QC  I             
Sbjct: 1408 VKAGGMRFEIHFKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGED 1467

Query: 142  --KHDN------RDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
              K D+         PALQT+G++F  FW M+DDL +R + SND+HA+L+ +GVEAA+  
Sbjct: 1468 DSKRDDIPSSVKEKIPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEV 1527

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYGMAVSTSPFSKMSFETASTF 477
            II+EV NVF+ YGISV+IRHL LIADFMTHSG YRP++R G+A STSPF K+S+ETAS F
Sbjct: 1528 IIREVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISYETASNF 1587

Query: 478  IVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            IVEAA HG+VD LE+PS+RICLGLPVKMGTGC DL+QKL+
Sbjct: 1588 IVEAARHGQVDTLETPSSRICLGLPVKMGTGCIDLIQKLE 1627


>ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Populus trichocarpa]
            gi|550335519|gb|ERP58815.1| hypothetical protein
            POPTR_0006s05420g [Populus trichocarpa]
          Length = 1132

 Score =  262 bits (670), Expect = 8e-68
 Identities = 135/221 (61%), Positives = 162/221 (73%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK------------ 144
            VEAKGL FE+H +FTNEPHILLA+IAQKTAKKV I+  G +++C V              
Sbjct: 911  VEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQVTDCKENQVIYYGKD 970

Query: 145  ---------HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                      + +  PAL T GV+F  FW MQD LD+R + SN IH +L+ +GVEAAR T
Sbjct: 971  PKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIHGMLKAYGVEAARET 1030

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ +VF  YGISV+ RHLSLIAD+MTH+G YRPMSR  G++ S SP SKMSFETAS 
Sbjct: 1031 IIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISESISPLSKMSFETASK 1090

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAA HGEVD+LE+PSAR+CLGLPVKMGTG FDLMQKL+
Sbjct: 1091 FIVEAALHGEVDNLEAPSARVCLGLPVKMGTGSFDLMQKLE 1131


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  259 bits (661), Expect = 9e-67
 Identities = 136/216 (62%), Positives = 160/216 (74%), Gaps = 20/216 (9%)
 Frame = +1

Query: 10   KGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK--------------- 144
            +GL FEVHF+  NEPHILLAQIA+KTAKKVYI+  G I+QC V                 
Sbjct: 1181 RGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKK 1240

Query: 145  ----HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEV 312
                 D     AL T GV+F AFW M+D +D+R + SN IHA+L T+GVEAAR TII+E+
Sbjct: 1241 RKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREI 1300

Query: 313  MNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEA 489
             +VF  YGI+V+IRHL+LIADFMTHSG YRPMSR  G+A S SPFSKMSFETAS FIVEA
Sbjct: 1301 SHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEA 1360

Query: 490  AYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            A HG VD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1361 AKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1396


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  259 bits (661), Expect = 9e-67
 Identities = 136/216 (62%), Positives = 160/216 (74%), Gaps = 20/216 (9%)
 Frame = +1

Query: 10   KGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK--------------- 144
            +GL FEVHF+  NEPHILLAQIA+KTAKKVYI+  G I+QC V                 
Sbjct: 1184 RGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKK 1243

Query: 145  ----HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEV 312
                 D     AL T GV+F AFW M+D +D+R + SN IHA+L T+GVEAAR TII+E+
Sbjct: 1244 RKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREI 1303

Query: 313  MNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEA 489
             +VF  YGI+V+IRHL+LIADFMTHSG YRPMSR  G+A S SPFSKMSFETAS FIVEA
Sbjct: 1304 SHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEA 1363

Query: 490  AYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            A HG VD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1364 AKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1399


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  259 bits (661), Expect = 9e-67
 Identities = 136/216 (62%), Positives = 160/216 (74%), Gaps = 20/216 (9%)
 Frame = +1

Query: 10   KGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK--------------- 144
            +GL FEVHF+  NEPHILLAQIA+KTAKKVYI+  G I+QC V                 
Sbjct: 1473 RGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKK 1532

Query: 145  ----HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEV 312
                 D     AL T GV+F AFW M+D +D+R + SN IHA+L T+GVEAAR TII+E+
Sbjct: 1533 RKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREI 1592

Query: 313  MNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEA 489
             +VF  YGI+V+IRHL+LIADFMTHSG YRPMSR  G+A S SPFSKMSFETAS FIVEA
Sbjct: 1593 SHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEA 1652

Query: 490  AYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            A HG VD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1653 AKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1688


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  259 bits (661), Expect = 9e-67
 Identities = 136/216 (62%), Positives = 160/216 (74%), Gaps = 20/216 (9%)
 Frame = +1

Query: 10   KGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSVIK--------------- 144
            +GL FEVHF+  NEPHILLAQIA+KTAKKVYI+  G I+QC V                 
Sbjct: 1449 RGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKK 1508

Query: 145  ----HDNRDTPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEV 312
                 D     AL T GV+F AFW M+D +D+R + SN IHA+L T+GVEAAR TII+E+
Sbjct: 1509 RKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREI 1568

Query: 313  MNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETASTFIVEA 489
             +VF  YGI+V+IRHL+LIADFMTHSG YRPMSR  G+A S SPFSKMSFETAS FIVEA
Sbjct: 1569 SHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEA 1628

Query: 490  AYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            A HG VD+LE+PS+RICLGLPVKMGTG FDLMQK++
Sbjct: 1629 AKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1664


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  259 bits (661), Expect = 9e-67
 Identities = 134/214 (62%), Positives = 164/214 (76%), Gaps = 22/214 (10%)
 Frame = +1

Query: 22   FEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCS--------VIKHDNRDT----- 162
            FE+HF+FT EPHILLAQIAQKTA+KV I+  G + QC         VI +   D+     
Sbjct: 1436 FEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKREEI 1495

Query: 163  --------PALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARATIIKEVMN 318
                    PALQT+G++F +FW MQDDL++R + SN++HA+L T+GVEAA+ TII+EV N
Sbjct: 1496 PSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIREVQN 1555

Query: 319  VFEPYGISVDIRHLSLIADFMTHSGGYRPMSRYG-MAVSTSPFSKMSFETASTFIVEAAY 495
            VF+ YGISV+IRHL LIADFMTHSG YRPMSR G +A STSPF K+ FETAS FIVEAA 
Sbjct: 1556 VFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIVEAAC 1615

Query: 496  HGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            HG+VD+L+SPSARICLGLPVKMGTGC +L+QKL+
Sbjct: 1616 HGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1649


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  258 bits (658), Expect = 2e-66
 Identities = 137/221 (61%), Positives = 165/221 (74%), Gaps = 22/221 (9%)
 Frame = +1

Query: 1    VEAKGLEFEVHFRFTNEPHILLAQIAQKTAKKVYIKRSGNIEQCSV-------------- 138
            V A+G+ FE HF+F NEP+ILLAQIA+  AKKVYI+ SG I+QC V              
Sbjct: 1494 VAARGMHFEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKD 1553

Query: 139  ------IKHDNRD-TPALQTAGVNFPAFWNMQDDLDIRNIVSNDIHAVLRTFGVEAARAT 297
                  IK + ++   AL T GV+F AFW +QD +D+R I SN+I A+L T+GVEAAR T
Sbjct: 1554 PKTREDIKPEEKEKVQALHTTGVDFHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARET 1613

Query: 298  IIKEVMNVFEPYGISVDIRHLSLIADFMTHSGGYRPMSRY-GMAVSTSPFSKMSFETAST 474
            II+E+ +VF  YGISV+ RHLSLIADFMTHSGGYRPMSR  G+A S SPFSKM+FETAS 
Sbjct: 1614 IIREIKHVFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASK 1673

Query: 475  FIVEAAYHGEVDDLESPSARICLGLPVKMGTGCFDLMQKLQ 597
            FIVEAA +G+VD L++PSARICLGLPVKMGTG FDLMQKL+
Sbjct: 1674 FIVEAASYGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLE 1714