BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00012150
         (2012 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   951   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   921   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   919   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   918   0.0  
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   914   0.0  
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   898   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   886   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   886   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   886   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   876   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     858   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   858   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    855   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     853   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    853   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   852   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   847   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   844   0.0  
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr...   843   0.0  
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   842   0.0  

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  951 bits (2457), Expect = 0.0
 Identities = 445/628 (70%), Positives = 533/628 (84%)
 Frame = -1

Query: 1895 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 1716
            T+  +K+ V+TQVSFGGFDK ++A++L  +L+NEIG +WRCRLK SWTPPESYPNF++ +
Sbjct: 3    TKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITD 62

Query: 1715 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 1536
            TA IQ  D Y +VEPHAFVHFASP++AT A N AG CEL  N  P++VSLGPEN FH+NQ
Sbjct: 63   TAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122

Query: 1535 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 1356
            +RRTT PFK S+VHVE+GTLVSRDEFLVGW+GP SGV+F+VDPFD  CK  FT++TAFSF
Sbjct: 123  RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSF 182

Query: 1355 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 1176
            KGTT+HAVI+CDFKLEFLVR+I +IKQY   S L++LLQLAS+P ++YRTADDDI   VP
Sbjct: 183  KGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVP 242

Query: 1175 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQK 996
            FDLLDD+DPWIRT DFTP GAIGRCNSYR+S+ PR G KL++++ +L+E R+  DC R+ 
Sbjct: 243  FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP 302

Query: 995  LTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQK 816
            L V  EP+Y MPMSD FFCI  +EG+ F+++F+VNAVMHKG+ NQHQLSD FF+LLR+Q 
Sbjct: 303  LHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQP 362

Query: 815  REVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTK 636
             +VNIAALRHICSY+HPVFDA KRLK VQ+WLLKNPKL ++S   D   E+RRL ITPT+
Sbjct: 363  LDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTR 422

Query: 635  AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFP 456
            AYCLPPEVELSNRVLR+YKD+AD+FLRVTFMDEG+Q +N++ LTYY APIVRDITSN F 
Sbjct: 423  AYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFS 482

Query: 455  QKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKF 276
            QKT +FKRVK+I++ GFYLCGRKYSFLAFSSNQL+DRSAWFFAED K +V  I++WMGKF
Sbjct: 483  QKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKF 542

Query: 275  TDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVA 96
            T+RN+AKC ARMG CFSSTYAT+ VPS E  LD+PDIERN Y FSDGIGM+TPDLA EVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVA 602

Query: 95   NKLQLTTNPPCAYQIRFAGCKGVIACWP 12
             KL+L  NPPCAYQIR+AGCKGV+ACWP
Sbjct: 603  EKLKLEVNPPCAYQIRYAGCKGVVACWP 630


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  921 bits (2380), Expect = 0.0
 Identities = 444/630 (70%), Positives = 534/630 (84%), Gaps = 2/630 (0%)
 Frame = -1

Query: 1895 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 1716
            +E  +KDMV+TQ+S GGFD++++A ELT +LE+ IG + RCRLK S TPPESYP+F++++
Sbjct: 3    SEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIID 62

Query: 1715 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 1536
            TA I+ T+DY+KVEPHAFVHF SPEAAT AL+ AG  EL L+  PL+VSLGPE  FH+NQ
Sbjct: 63   TAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQ 122

Query: 1535 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 1356
            +RRTT PFKF +V +E+G LVSRDE+  GW+GP+SGV+F+VDPFD TCK  FTK+TAFSF
Sbjct: 123  RRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSF 182

Query: 1355 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 1176
            KG  KHAVIKC+FK+EFLVREI +++Q R +S LI+LLQL+SSP ++YRTADDDI ++VP
Sbjct: 183  KGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVP 242

Query: 1175 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCPR 1002
            FDLLDD+DPWIRT DFT  GAIGRCNSYRIS+ PR+G KL+K+M YL+  R+    D P+
Sbjct: 243  FDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPK 302

Query: 1001 QKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRS 822
             +L V+DEPD+G+PMSD FFCIQ KEGI F V+F+VNAVMHKG+INQHQLSD FF+LLRS
Sbjct: 303  WQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRS 362

Query: 821  QKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITP 642
            Q++++NIAAL+HICSYRHPVFDA +RLK V +WLLKNPKLLK+    D   EVRRLVITP
Sbjct: 363  QQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 422

Query: 641  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNG 462
            +KAYCLPPEVELSNRVLR YK+V+DRFLRVTFMDEGMQ +N++VL YYVAPIV+ ITSN 
Sbjct: 423  SKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNS 482

Query: 461  FPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMG 282
            FPQKT VFKRVKTI++ GFYLCGRKYSFLAFSSNQL+DRSAWFFAED K +V  IK WMG
Sbjct: 483  FPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMG 542

Query: 281  KFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAME 102
            KFT+RNVAKC ARMG CFSSTYAT+ VPS E   ++PDI+RNGY+FSDGIG + PDLAME
Sbjct: 543  KFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAME 601

Query: 101  VANKLQLTTNPPCAYQIRFAGCKGVIACWP 12
            VA KL+L    P AYQIR+AGCKGV+ACWP
Sbjct: 602  VAEKLKL-EGTPSAYQIRYAGCKGVVACWP 630


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  919 bits (2376), Expect = 0.0
 Identities = 432/628 (68%), Positives = 519/628 (82%)
 Frame = -1

Query: 1895 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 1716
            TE   K+ V+TQVS GGFD H++AK+L ++LE EIG++WRCRLK SWTPPESYPNF++ +
Sbjct: 3    TEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITD 62

Query: 1715 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 1536
               I  T+DY +VEPHAFVHFA P++AT A++ A  CEL LN   L+ SLGPEN F +NQ
Sbjct: 63   ITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQ 122

Query: 1535 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 1356
            +RR T PFK S V VE+GTLVSRDEF VGW+GP +GV+F+VDPFD TC+  F++ TAFSF
Sbjct: 123  RRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSF 182

Query: 1355 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 1176
            K T +HAVIKCDFK+EFLVR+I +IKQY   S L++LLQLAS+P ++YRTADDDI  SVP
Sbjct: 183  KSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVP 242

Query: 1175 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQK 996
            FDLLDD+DPWIRT DFT  GAIGRC+SYR+S+ PR GPKL K++ +LKE R+  +  R+ 
Sbjct: 243  FDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRP 302

Query: 995  LTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQK 816
            + ++DEPD+GMPM+D FFCI  KEGI+FDV+F+VNAVMHKG+ NQHQLS+ FF+LLR+Q 
Sbjct: 303  IRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQP 362

Query: 815  REVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTK 636
             EVN+AAL+HI  YR PVFDA K+LK  QEWLLKNPK  KN    D  AE+RRLVITPTK
Sbjct: 363  TEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTK 422

Query: 635  AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFP 456
            AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEG+Q +NS+ L Y+ APIVR ITS  FP
Sbjct: 423  AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFP 482

Query: 455  QKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKF 276
            QKT +FKRV++I++ GFYLCGR+YSFLAFSSNQL+DRSAWFFAED  I V+ IK WMGKF
Sbjct: 483  QKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKF 542

Query: 275  TDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVA 96
            T++N+AKC ARMG CFSSTYATI VP EE N D+PDI+RNGY+FSDGIGM+TPDLA EVA
Sbjct: 543  TNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVA 602

Query: 95   NKLQLTTNPPCAYQIRFAGCKGVIACWP 12
             KL+   +PPCAYQIR+AGCKGV+ACWP
Sbjct: 603  EKLKFDFDPPCAYQIRYAGCKGVVACWP 630


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  918 bits (2372), Expect = 0.0
 Identities = 431/632 (68%), Positives = 527/632 (83%), Gaps = 3/632 (0%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E   K+ V+TQVS GGFD H++AK+L ++L+  IG++WRCRLK SWTPPESYPNF++ + 
Sbjct: 4    EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
              I+ T+DY +V PHAFVHFA P++AT A+N +G CEL LN   L+VSLGP+N F +NQ+
Sbjct: 64   TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RRTT PFK S+V  E+G LVSRDEF VGW+GP SGV+F+VDPFD TCK  F++ TAFS K
Sbjct: 124  RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
             T++HAVIKCDFK+EFLVR+I +I QY   S L++LLQLAS+P ++YRTADDDI   VPF
Sbjct: 184  STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP---NDCPR 1002
            DLLDD+DPWIRT DFT  GAIGRC+SYR+S+ PR G KL K++KYLKE R+     +  R
Sbjct: 244  DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303

Query: 1001 QKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRS 822
            +++ + DEPD+GMPMSD FFCI  KEGI+F+V+F+VNAVMHKG+ NQHQLS+ FF+LLR+
Sbjct: 304  RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363

Query: 821  QKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITP 642
            Q  EVN++AL+HIC+YR PVF+A +RLK VQEWLLKNP L KN        E+RRLVITP
Sbjct: 364  QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423

Query: 641  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNG 462
            TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEG+Q++NS+VL YYVAPIVRDITSN 
Sbjct: 424  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483

Query: 461  FPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMG 282
            FPQKT +FKRV++I++ GFYLCGR+YSFLAFS+NQL+D+SAWFF+E+  I+VL++K WMG
Sbjct: 484  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMG 543

Query: 281  KFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAME 102
            KFT+RN+AKC ARMG CFSSTYATI VP EE N D+PDIERNGY FSDGIG++TPDLA E
Sbjct: 544  KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLARE 603

Query: 101  VANKLQLTTNPPCAYQIRFAGCKGVIACWPGK 6
            VA KL+L  +PPCAYQIR+AGCKGV+ACWPGK
Sbjct: 604  VAEKLKLDIDPPCAYQIRYAGCKGVVACWPGK 635


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  914 bits (2362), Expect = 0.0
 Identities = 434/629 (68%), Positives = 520/629 (82%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  +   V+TQVSFGGF  H  AK+L  +LE+EIG+++RCRLK SWTPPES+PNF++ NT
Sbjct: 4    EGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI-NT 62

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            A+++ TDDY +VEPHAFVHF SP++ T A++ AG CEL  N  PL+VSLGPEN + +N++
Sbjct: 63   ADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRR 122

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RRT  PFK S+VHVE+G+LV +DEF   W+GP  GV+F+VDPFD TCK  FT +TAFSFK
Sbjct: 123  RRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFK 182

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
            GT KHAVIKCDFK+EFLVREI +IKQY   S L++LL+L SSP + YRTADDDI  SVPF
Sbjct: 183  GTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPF 242

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQKL 993
            DLLDD+DPWIRT DFTP GAIGRCNSYR+ + PR G KL+K+M YL+E R+   C +   
Sbjct: 243  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPP 302

Query: 992  TVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQKR 813
             +QDEPD+GM  ++ FF IQ +EGISF+++F+VNAVMHKG +NQHQLSD FF LLRSQ +
Sbjct: 303  KIQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPK 362

Query: 812  EVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTKA 633
            E+N+AAL+H+CSYR PVFDAC+RLK VQ+WLLKNPKL+K+    D  AEVRRLVITPTKA
Sbjct: 363  EINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKA 422

Query: 632  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQ 453
            YCLPPEVELSNRVLRKYK+VADRFLRVTFMDEGMQ++NS+VL YYVAPIV++ITSN F Q
Sbjct: 423  YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQ 482

Query: 452  KTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKFT 273
            KT VFKR +TI++ GFYLCGRKY+FLAFSSNQL+DRSAWFFAE   I+V  I  WMGKF 
Sbjct: 483  KTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFN 542

Query: 272  DRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVAN 93
            ++NVAKC ARMG CFSSTYAT+ V S E N D+PDI+RNGY FSDGIGM+TPDLA+EVA 
Sbjct: 543  NKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAE 601

Query: 92   KLQLTTNPPCAYQIRFAGCKGVIACWPGK 6
            KL+L  NPPCAYQIRFAGCKGV+ACWP K
Sbjct: 602  KLKLDRNPPCAYQIRFAGCKGVVACWPSK 630


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  898 bits (2320), Expect = 0.0
 Identities = 423/628 (67%), Positives = 518/628 (82%)
 Frame = -1

Query: 1895 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 1716
            ++  +KD V+TQVS GGF +H++AK+L ++ +NE+GV+WRCRLK SWTPPESYPNF++++
Sbjct: 3    SQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILD 62

Query: 1715 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 1536
            +  IQ TDDY+KVEPHAFVHFASP  AT A++ AG  EL+ N   L+VSLGPEN +++N+
Sbjct: 63   STVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNR 122

Query: 1535 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 1356
            +RR T PFK S+V +++G +VSRDEF VGW+GP  GV+F+VDPFD TCK  F+++TAFSF
Sbjct: 123  RRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSF 182

Query: 1355 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 1176
            KGTT++AVIKCDFK+EFLVR+I +IKQY   S L++ LQLASSP ++YRTADD+I +SVP
Sbjct: 183  KGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVP 242

Query: 1175 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQK 996
            FDLLDD+D WIRT DFTP GAIGRCN+YR+ + PR G KL+K++ YL+E R+P D  R  
Sbjct: 243  FDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWP 302

Query: 995  LTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQK 816
            L + DEPD+G  MSD F+CI  KEGI F+++F+VNAVMHKG+ NQHQLS+ FF LLR Q 
Sbjct: 303  LRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQP 362

Query: 815  REVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTK 636
            REVN+AAL+HI SYR PVFDA KRLK V +WLL+NP L K+    D   E+RRLVITPTK
Sbjct: 363  REVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTK 422

Query: 635  AYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFP 456
            A+CL PEVELSNRVLRKYK+VADRFLRVTFMDEGMQ +N++VLTYY A IVRD+TS  F 
Sbjct: 423  AHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFS 482

Query: 455  QKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKF 276
            QKT VFKRV++I++ GFYLCGRKYSFLAFS+NQL+D SAWFFAED K +VL I  WMGKF
Sbjct: 483  QKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKF 542

Query: 275  TDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVA 96
            T+RN+AKC ARMG CFSSTYAT+ VPS E N  +PDIERNGY FSDGIG +TPDLA EVA
Sbjct: 543  TNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVA 602

Query: 95   NKLQLTTNPPCAYQIRFAGCKGVIACWP 12
             KL+L  NPPCAYQIR+AGCKGV+ACWP
Sbjct: 603  QKLKLDLNPPCAYQIRYAGCKGVVACWP 630


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score =  886 bits (2290), Expect = 0.0
 Identities = 426/630 (67%), Positives = 514/630 (81%), Gaps = 1/630 (0%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  +K +V  QVSFGGFD+++ A EL  +LENE+G +WRCRLK S TP ESYP+F + NT
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNT 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            A ++ TDDYEKVEPHAFVHFA P   TRA++ AG  EL LN   L+VSLGPEN F +NQ+
Sbjct: 64   AEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
             RT+ PFK  +V VE+GTLVSRDEF V W+GP SG +F+VDPFD TCK  FT++ AF+ K
Sbjct: 124  GRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
             +T+HAVIKC+FK+EFLVREI  +KQY   S + +LLQLASSP ++YRTADDDI   VPF
Sbjct: 184  SSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQKL 993
            D+LDD+DPWIRT DFTP GAIGRCNSYRIS+S R   KL K + YL E R+  D   + +
Sbjct: 244  DMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303

Query: 992  TVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQKR 813
            T+++EPD+ +PMSD FFCI  +EGISF+++F+VNAVMHKG+INQHQLSD FF+LLR Q R
Sbjct: 304  TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363

Query: 812  EVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTKA 633
            EVN+AAL+HI SY+ PVFDACKRLK VQEWLLK+P+L K     D   EVRRLVITPTKA
Sbjct: 364  EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423

Query: 632  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQ 453
            YCLPPEVELSNRVLRKYKD+ADRFLRVTFMDEG+Q +N++VL+Y++APIVRDIT N F Q
Sbjct: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483

Query: 452  KTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKFT 273
            KT VFKRV++I+S GFYLCGRK+SFLAFSS+QL+D SAWFF+ED K +VL+IK WMG+FT
Sbjct: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543

Query: 272  DRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVAN 93
            D+N+AKC ARMG CFSSTYAT+ VP  E + ++PDI+RNGY FSDGIG +TPDLAMEVA 
Sbjct: 544  DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603

Query: 92   KLQLTTN-PPCAYQIRFAGCKGVIACWPGK 6
            KL+L  N PPCAYQIR+AGCKGV+ACWP K
Sbjct: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score =  886 bits (2290), Expect = 0.0
 Identities = 426/630 (67%), Positives = 514/630 (81%), Gaps = 1/630 (0%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  +K +V  QVSFGGFD+++ A EL  +LENE+G +WRCRLK S TP ESYP+F + NT
Sbjct: 4    EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNT 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            A ++ TDDYEKVEPHAFVHFA P   TRA++ AG  EL LN   L+VSLGPEN F +NQ+
Sbjct: 64   AEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
             RT+ PFK  +V VE+GTLVSRDEF V W+GP SG +F+VDPFD TCK  FT++ AF+ K
Sbjct: 124  GRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
             +T+HAVIKC+FK+EFLVREI  +KQY   S + +LLQLASSP ++YRTADDDI   VPF
Sbjct: 184  SSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQKL 993
            D+LDD+DPWIRT DFTP GAIGRCNSYRIS+S R   KL K + YL E R+  D   + +
Sbjct: 244  DMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303

Query: 992  TVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQKR 813
            T+++EPD+ +PMSD FFCI  +EGISF+++F+VNAVMHKG+INQHQLSD FF+LLR Q R
Sbjct: 304  TIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSR 363

Query: 812  EVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTKA 633
            EVN+AAL+HI SY+ PVFDACKRLK VQEWLLK+P+L K     D   EVRRLVITPTKA
Sbjct: 364  EVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKA 423

Query: 632  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQ 453
            YCLPPEVELSNRVLRKYKD+ADRFLRVTFMDEG+Q +N++VL+Y++APIVRDIT N F Q
Sbjct: 424  YCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQ 483

Query: 452  KTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKFT 273
            KT VFKRV++I+S GFYLCGRK+SFLAFSS+QL+D SAWFF+ED K +VL+IK WMG+FT
Sbjct: 484  KTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFT 543

Query: 272  DRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVAN 93
            D+N+AKC ARMG CFSSTYAT+ VP  E + ++PDI+RNGY FSDGIG +TPDLAMEVA 
Sbjct: 544  DKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQ 603

Query: 92   KLQLTTN-PPCAYQIRFAGCKGVIACWPGK 6
            KL+L  N PPCAYQIR+AGCKGV+ACWP K
Sbjct: 604  KLKLDVNPPPCAYQIRYAGCKGVVACWPAK 633


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score =  886 bits (2290), Expect = 0.0
 Identities = 421/627 (67%), Positives = 514/627 (81%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E   K+ V+TQVS GGFD+H+ A++L  +LENE+G++WRCRLK SWTPPESYPNF++ +T
Sbjct: 4    EGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDT 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
              IQ  D+Y+KVEPHAFVHFASP+A T A++ AG  EL  N   L+VSLGPEN +++N++
Sbjct: 64   TVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RR T PFK  +V +E+GTL S DEF+VGW+GP SGV F+VDPFD TCK  F+++TAFSFK
Sbjct: 124  RRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
            GT +HAVIKCDFK+EFLVREI ++KQY   +  ++LLQLASSP ++YRTADDD   +VPF
Sbjct: 184  GTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQKL 993
             LLDD+D WIRT DFT  GAIGRCN+YR+ + PR G KL+K+M YL+E R+P +  R +L
Sbjct: 244  GLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQL 303

Query: 992  TVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQKR 813
             ++DEPD+G  MSD F+ I  KEGI F+++F+VNAV+HKG+ NQHQLS  FF LLR+Q  
Sbjct: 304  RIRDEPDFGRSMSDHFYYIY-KEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSM 362

Query: 812  EVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTKA 633
            EVN+AAL+HI SYRHPV+DA +RLK V +WLLKNPKL K+    D   E+RRLVITPTKA
Sbjct: 363  EVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKA 422

Query: 632  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQ 453
            YCL PEVELSNRVLRKYKDVADRFLRVTFMDEGMQ +N++VLTYY A IVRD+TS  F Q
Sbjct: 423  YCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQ 482

Query: 452  KTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKFT 273
            KT VFKRVK+I++ GFYLCGRKYSFLAFS+NQL+DR+AWFFAED KI VL I  WMGKFT
Sbjct: 483  KTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFT 542

Query: 272  DRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVAN 93
            +RN+AKC ARMG CFSSTYAT+ VPS + N+ +PDI+RNGY+FSDGIG +TPDLAMEVA 
Sbjct: 543  NRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQ 602

Query: 92   KLQLTTNPPCAYQIRFAGCKGVIACWP 12
            KL+L  NPPCAYQIR+AGCKGV+ACWP
Sbjct: 603  KLKLDLNPPCAYQIRYAGCKGVVACWP 629


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  876 bits (2263), Expect = 0.0
 Identities = 414/627 (66%), Positives = 504/627 (80%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  + D V+TQVSFGGF  H++AKEL  +LE+EIG+++RCRLK SWTPPES PNF++ + 
Sbjct: 4    EERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDA 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            A+I+ TDDY KVEPHAFVHFASPE+ T  ++  G C+L  N   L+ SLGPEN F++N++
Sbjct: 64   ADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RRT  PFK ++V +E+G+LV  DEF V WKGP  GV+FVVDPFD TCK  F ++TAFSFK
Sbjct: 124  RRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
            G  KHAVI CDFK EF VREI + K Y      ++LL+L SSP + YRTADDDI  SV F
Sbjct: 184  GLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQKL 993
            DLLDD+DPWIRT DFTP GAIGRCN YR+ + PR G KL+K+M YLKE R+     ++  
Sbjct: 244  DLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPP 303

Query: 992  TVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQKR 813
             +QDEP +G PMSD+ F I  ++ ISFD++F+VNAVMHKG++NQHQLS+ FF+LLR+Q  
Sbjct: 304  RIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPE 363

Query: 812  EVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPTKA 633
            E+N+AAL+H+CSY+HPVFDA KRLK VQEWLL+NPKL+KN    D  AEVRRLVITPTKA
Sbjct: 364  EINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKA 423

Query: 632  YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQ 453
            YCLPPEVELSNRVLRKYK+VADRFLRVTFMDEGMQ +NS+V+  YVAPIV++IT N FPQ
Sbjct: 424  YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQ 483

Query: 452  KTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGKFT 273
            KT V+ R++ I+  GF+LCGRKYSFLAFSSNQL+DRSAWFFAED  I++  IK+WMG+FT
Sbjct: 484  KTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFT 543

Query: 272  DRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEVAN 93
            +RNVAKC ARMG CFSSTYAT+ VPS + N ++PDIERNGY FSDGIG +TPDLAMEVA 
Sbjct: 544  NRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAE 603

Query: 92   KLQLTTNPPCAYQIRFAGCKGVIACWP 12
            KL+L  +PP AYQIR+ GCKGV+ACWP
Sbjct: 604  KLKLDRDPPSAYQIRYGGCKGVVACWP 630


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  858 bits (2218), Expect = 0.0
 Identities = 413/634 (65%), Positives = 514/634 (81%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +KD+V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP FD+ 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +   +Q   DYEKV PHAFVHFAS E+A  AL  AG  ELIL + PL VSLGPEN + +N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V +E+G LVS+D+F+VGW+GP +GV+F+VDPF+  CKI FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  +HA+IKC+FK+EFLVREI +IK+ +  + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+VNAV+HKG++NQHQ+++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S + EVN+AAL+H+ SY+ PV DA ++L  +++WLLKNPKLL+ +   D   EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L+ NPP AYQIR+AGCKGV+ACWP K+
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN 633


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  858 bits (2216), Expect = 0.0
 Identities = 413/634 (65%), Positives = 513/634 (80%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +KD+V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+ 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            + A +    DYEKV PHAFVHFAS E+A  AL  AG   LIL + PL VSLGPEN + +N
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F VDPF+  CKI FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  KHA+IKC+FK+EF+VREI +IK+++  + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+VNAV+HKG++NQHQ+++ FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S + EVN+AAL+H+ SY+ PV DA ++L  +Q+WLLKNPKLL+ +   D   EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L+ NPP AYQIR+AGCKGV+ACWP K+
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN 633


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  855 bits (2208), Expect = 0.0
 Identities = 412/634 (64%), Positives = 514/634 (81%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +K++V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+ 
Sbjct: 2    GSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +   +Q  ++YEKV PHAFVHFAS E+A  AL  AG  ELIL + PL VSLGPEN + +N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F VDPF+ TCKI FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  +HA+IKC+FK+EF+VREI +IK+ +  + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+VNAV+HKG++NQHQ+++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S++ EVN AAL+H+ SY+ PV DA ++L  +Q+WLLKNPKLL  +   D   EVRRLVIT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L+ NPP AYQIR+AGCKGV+ACWP K+
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN 633


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  853 bits (2205), Expect = 0.0
 Identities = 412/634 (64%), Positives = 513/634 (80%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +K++V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+ 
Sbjct: 2    GSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +   +Q  ++YEKV PHAFVHFAS E+A  AL  AG  ELIL + PL VSLGPEN + +N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F+VDPF+ TCKI FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  +HA+IKC+FK+EFLVREI +IK+ +  + L++L QLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+VNAV+HKG++NQHQ+++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQN-EGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S + EVN AAL+H+ SY+ PV DA ++L  +Q+WLLKNPKLL  +   D   EVRRLVIT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L+ NPP AYQIR+AGCKGV+ACWP K+
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN 633


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  853 bits (2205), Expect = 0.0
 Identities = 412/634 (64%), Positives = 512/634 (80%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +KD+V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+ 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +   +    DYEKV PHAFVHFAS E+A  AL  AG  ELIL + PL VSLGPEN + +N
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F+VDPF+ TCKI FTK+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  +HA+IKC+FK+EFLVREI +IK+ +  + L++L QLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+VNAV+HKG++NQHQ+++ FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQN-EGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S++ EVN+AAL+H+ SY+ PV DA ++L  +Q+WLLKNPKLL+ +   D   EVRRLVIT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L  NPP AYQIR+AG KGV+ACWP K+
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKN 633


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  852 bits (2201), Expect = 0.0
 Identities = 409/634 (64%), Positives = 511/634 (80%), Gaps = 2/634 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E  +K++V+TQ+S GGFD  ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+ 
Sbjct: 2    GSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +   +Q  ++YEKV PHAFVHFAS E+A  AL  AG  EL+L + PL VSLGPEN + +N
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT PFKFS+V VE+G LVS+ +F+VGW+GP +GV+F+VDPF+ TCKI FTK+T FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            F+G  +HA+IKC+FK+EFLVREI +IK+ +    L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1005
             FDLLDD+D WIRT D T  GAIGRCN+YRIS+ PR GP  EK+M Y    R+P    C 
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1004 RQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLR 825
            R+ L V+DEPD+G+ MSD FFC Q+ EGISF V+F+ NAV+HKG++NQHQ+ + FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQN-EGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 824  SQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVIT 645
            S + EVN+AAL+H+ SY+ PV DA ++L  +Q+WLLKNPKLL+ +   D   EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 644  PTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSN 465
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN +VLTYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 464  GFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWM 285
              PQ+T +F+RVK+I+S GF+LCGRKYSFLAFS+NQL+DRSAWFFAED KI V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 284  GKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAM 105
            G+F++RNVAKC ARMG CFSSTYAT+ VPS E N ++PDIERNGY FSDGIGM++ DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 104  EVANKLQLTTNPPCAYQIRFAGCKGVIACWPGKD 3
            EVA KL L+ NPP AYQIR+AGCKGV+ACWP K+
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKN 633


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  847 bits (2187), Expect = 0.0
 Identities = 406/631 (64%), Positives = 506/631 (80%), Gaps = 2/631 (0%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  +KD V+TQ+S GGF   + A +L ++LE++IG+++RCRLK SWTPPESYP F++++T
Sbjct: 4    EGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDT 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            ANI+ TD+Y+KVEPHAFVHFASPE+ T ALN +GCC+L L   PL+VS GPEN + +NQ+
Sbjct: 64   ANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RRTT PFK S+V VE+GTLVS  EF V W+GP  GV F+VDPFD  C+  F+++TAFSFK
Sbjct: 124  RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
            G  K AVIKCDF++ FLVR+I +IK+Y   S L++LL LASSP ++YRTADDDI +SVPF
Sbjct: 184  GIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPND--CPRQ 999
            DLLDD+DPWIRT DFTP GAIGRCN YRIS+ PR G KL K+M YLK  R+       +Q
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQ 303

Query: 998  KLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQ 819
             L   +EPD+G+PMSD+FF I  ++ I+FD++F+VNA++HKG+ NQH+LSD FFELL++Q
Sbjct: 304  TLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQ 363

Query: 818  KREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPT 639
             +E+N+AAL+H+CSY+ PVFDA KRLK VQEWLL+NPKL + S   D   EVRRLVITP+
Sbjct: 364  PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPS 423

Query: 638  KAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGF 459
            KAYC+PPEVELSNRVLRK+++V+D FLRVTFMDEGMQ +N + L YYVAPIV++ITSN F
Sbjct: 424  KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483

Query: 458  PQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGK 279
             Q+T ++KRVKTI+  GFY CGRKYSFLAFSSNQL+DRSAWFFAED KI   +I++WMGK
Sbjct: 484  SQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGK 542

Query: 278  FTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEV 99
            F  RNVAKC ARMG CFSSTYAT+ V + E N  +PD+ERN Y FSDGIG++T DLA EV
Sbjct: 543  FNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREV 602

Query: 98   ANKLQLTTNPPCAYQIRFAGCKGVIACWPGK 6
            A KL+L  N P AYQIR+AG KGV+A WP K
Sbjct: 603  AEKLKL-DNVPSAYQIRYAGFKGVVASWPAK 632


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  844 bits (2181), Expect = 0.0
 Identities = 405/631 (64%), Positives = 506/631 (80%), Gaps = 2/631 (0%)
 Frame = -1

Query: 1892 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 1713
            E  +K  V+TQ+S GGF   + A +L ++LE++IG+++RCRLK SWTPPESYP F +++T
Sbjct: 4    EGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDT 63

Query: 1712 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 1533
            A I+ T+DY+KVEPHAFVHFASPE+ T ALN +GCC+L L   PL+VS GP+N + +NQ+
Sbjct: 64   AKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQR 123

Query: 1532 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 1353
            RRTT PFK S+V VE+GTLVS  EF V W+GP  GV F+VDPFD  C+  F+++TAFSFK
Sbjct: 124  RRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFK 183

Query: 1352 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 1173
            G  K AVIKCDF++ FLVR+I +I++Y   S L++LL LASSP ++YRTADDDI +SVPF
Sbjct: 184  GIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPF 243

Query: 1172 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP-NDCP-RQ 999
            DLLDD+DPWIRT DFTP GAIGRCN YRIS+ PR G KL K+M YLK  R+   + P +Q
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQ 303

Query: 998  KLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQ 819
             L  Q+EPD+GMPMSD+FF +  ++ I+FD++F+VNA++HKG+ NQH+LSD FFELLR+Q
Sbjct: 304  TLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQ 363

Query: 818  KREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPT 639
             +E+N+AAL+H+CSY+ PVFDA KRLK VQEWLL+NPKL + S   D   EVRRLV+TP+
Sbjct: 364  PKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPS 423

Query: 638  KAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGF 459
            KAYC+PPEVELSNRVLRK+++V+D FLRVTFMDEGMQ +N + L YYVAPIV++ITSN F
Sbjct: 424  KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483

Query: 458  PQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGK 279
             QKT ++KRVKTI+  GFY CGRKYSFLAFSSNQL+DRSAWFFAED KI   +I++WMGK
Sbjct: 484  SQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGK 542

Query: 278  FTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEV 99
            F  RNVAKC ARMG CFSSTYAT+ V + E N  +PD+ERN Y FSDGIG++T DLA EV
Sbjct: 543  FNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREV 602

Query: 98   ANKLQLTTNPPCAYQIRFAGCKGVIACWPGK 6
            A KL+L  N P AYQIR+AG KGV+A WP K
Sbjct: 603  AEKLKL-DNVPSAYQIRYAGFKGVVASWPAK 632


>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
            gi|557105252|gb|ESQ45586.1| hypothetical protein
            EUTSA_v10010107mg [Eutrema salsugineum]
          Length = 927

 Score =  843 bits (2177), Expect = 0.0
 Identities = 403/641 (62%), Positives = 512/641 (79%), Gaps = 1/641 (0%)
 Frame = -1

Query: 1925 NFQKKMGSFGTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPP 1746
            N   K+   G++   K+ V+TQVS GGF +  +AKELTD+LE+E+G IWRCRLKNSWTPP
Sbjct: 9    NTNDKLRRMGSKGNMKNSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPP 68

Query: 1745 ESYPNFDLMNTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSL 1566
             SYPNF++ +T+NI+  +DY++VEPHAFVHF SPE+A  A++ AG C+LIL+  PL+VSL
Sbjct: 69   GSYPNFEIADTSNIRNFNDYKRVEPHAFVHFVSPESAACAMDAAGQCKLILDGQPLKVSL 128

Query: 1565 GPENSFHINQKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKI 1386
            GPEN + +NQ+RRTT P K S + VE+GTLVSRDEFLV W+     V+F+VDPFD+TC+ 
Sbjct: 129  GPENPYTLNQRRRTTTPLKLSGISVEIGTLVSRDEFLVSWRAEK--VDFLVDPFDNTCRF 186

Query: 1385 FFTKETAFSFKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRT 1206
             FTK TAFS K T +HAVI CD+KLE LVR+I  ++QYR     ++LLQLASSP ++YRT
Sbjct: 187  CFTKSTAFSLKDTMRHAVINCDYKLELLVRDIRTVRQYRASDGFVLLLQLASSPRVWYRT 246

Query: 1205 ADDDIYDSVPFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEW 1026
            ADDDIY++ P DLLDD+DPWIRT DFT  GAIGRC SYR+ +SPR+  KL  ++ YL+  
Sbjct: 247  ADDDIYETCPVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQ 306

Query: 1025 RIPNDCPRQKLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSD 846
            R+  +  R    ++DEP +G  +SD FFCI  KEGISF+++F+VN+V+H+GV+NQ QL++
Sbjct: 307  RVKEERVRWPPRIRDEPGFGEAVSDHFFCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTE 366

Query: 845  MFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAE 666
             FF+LLR+Q ++VNIA+L+H+C+Y  PVFDA KRLK VQEW+LKNPKLL +   SD  +E
Sbjct: 367  RFFDLLRNQPKDVNIASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISE 426

Query: 665  VRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPI 486
            +RRLVITPT+AYCLPPEVELSNRVLRKYK V++RFLRVTFMDE MQ +NS+VL+Y+VAPI
Sbjct: 427  IRRLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPI 486

Query: 485  VRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITV 306
            V+D+TS+ F QKT VFKRVKT+++ GF LCGRKYSFLAFSSNQL+DRSAWFF+ED    V
Sbjct: 487  VKDLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRV 546

Query: 305  LNIKHWMGKFTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGM 126
             +IK WMGKF D+NVAKC ARMGLCFSSTYAT++V   E + ++P+IERNGY FSDGIG 
Sbjct: 547  SDIKIWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPHEVDTELPEIERNGYTFSDGIGT 606

Query: 125  MTPDLAMEVANKLQLTTN-PPCAYQIRFAGCKGVIACWPGK 6
            ++PDLA EV  KL+L  +  PCAYQIR+AG KGV+A WP K
Sbjct: 607  ISPDLADEVMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSK 647


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  842 bits (2175), Expect = 0.0
 Identities = 399/632 (63%), Positives = 511/632 (80%), Gaps = 1/632 (0%)
 Frame = -1

Query: 1898 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 1719
            G+E   K+ V+TQVS GGF +  +AK+LTD+LE+E+G++WRCRLK SWTPP SYPNF++ 
Sbjct: 2    GSEGSMKNSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIA 61

Query: 1718 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 1539
            +T++I   DDY+KVEPHAFVHFA PE+A RA++ AG C LIL+  PL+VSLGP+N + +N
Sbjct: 62   DTSSIPKFDDYKKVEPHAFVHFAVPESAARAMDAAGQCNLILDGQPLKVSLGPKNPYTLN 121

Query: 1538 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 1359
            Q+RRTT P+K + + +E+GTLVSRDEFLV W+    GV+F+VDPFD+TCK  F K TAFS
Sbjct: 122  QRRRTTTPYKLAGISLEIGTLVSRDEFLVSWRA--DGVDFLVDPFDNTCKFCFRKSTAFS 179

Query: 1358 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 1179
            FK    HAVI CD+KLE LVR+I  ++QY+     +++LQLASSP ++YRTADDDI+D++
Sbjct: 180  FKDAVMHAVINCDYKLELLVRDIQTVRQYKNSHGYVLILQLASSPRVWYRTADDDIHDTI 239

Query: 1178 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRQ 999
            P DLLDD+DPWIRT DFT  GAIGRC+SYR+ +SPR+  KL  +++YL+  R+  +  R 
Sbjct: 240  PVDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRW 299

Query: 998  KLTVQDEPDYGMPMSDSFFCIQSKEGISFDVIFMVNAVMHKGVINQHQLSDMFFELLRSQ 819
               +++EP +G P+SD FFCI  KEGISF+++F+VN+V+H+GV NQ QL++ FF+LLR+Q
Sbjct: 300  PPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ 359

Query: 818  KREVNIAALRHICSYRHPVFDACKRLKQVQEWLLKNPKLLKNSWNSDYNAEVRRLVITPT 639
             ++VNIA+L+H+C+Y+ PVFDA KRLK VQEW+LKNPKLL     S+  +E+RRLVITPT
Sbjct: 360  PKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITPT 419

Query: 638  KAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGMQQLNSHVLTYYVAPIVRDITSNGF 459
            +AYCLPPEVELSNRVLRKY+ VA+RFLRVTFMDE MQ +NS+VL+Y+VAPIV+D+TS+ F
Sbjct: 420  RAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSF 479

Query: 458  PQKTCVFKRVKTIMSCGFYLCGRKYSFLAFSSNQLKDRSAWFFAEDSKITVLNIKHWMGK 279
             QKT VFKRVK+I++ GF LCGRKYSFLAFS+NQL+D SAWFFAED K  V +IK WMGK
Sbjct: 480  SQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWMGK 539

Query: 278  FTDRNVAKCTARMGLCFSSTYATINVPSEEFNLDVPDIERNGYEFSDGIGMMTPDLAMEV 99
            F D+NVAKC ARMGLCFSSTYAT++V   E N ++PDIERNGY FSDGIG +TPDLA EV
Sbjct: 540  FKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTITPDLADEV 599

Query: 98   ANKLQLTTN-PPCAYQIRFAGCKGVIACWPGK 6
              KL+L  +  PCAYQIR+AG KGV+A WP K
Sbjct: 600  MEKLKLDLHCTPCAYQIRYAGFKGVVARWPSK 631