BLASTX nr result
ID: Akebia27_contig00009784
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00009784
(3776 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 924 0.0
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 853 0.0
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 831 0.0
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 829 0.0
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 829 0.0
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 827 0.0
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 827 0.0
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 823 0.0
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 821 0.0
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 820 0.0
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 819 0.0
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 818 0.0
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 816 0.0
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal... 798 0.0
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 790 0.0
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 788 0.0
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 719 0.0
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 706 0.0
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun... 716 0.0
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun... 704 0.0
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 924 bits (2387), Expect(2) = 0.0
Identities = 428/596 (71%), Positives = 516/596 (86%)
Frame = -2
Query: 2515 PPFQTDQLIGVTPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINN 2336
P ++T+ + T +++V ELME+G++RES SPCAV V+LVPKKD WRMCVDCRAINN
Sbjct: 914 PAYRTNPV--ETKELEKQVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINN 971
Query: 2335 IMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LV 2156
I VKYRHPIPRLDDMLDELHGS +FSK+DLKS YH+IRMKEGDEWKT FKT GLYE LV
Sbjct: 972 ITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLV 1031
Query: 2155 MPFGLINAPSTFMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 1976
MPFGL NAPSTFMRLMNHVL AFI F+++YFDDIL+YS++L++H+ HLK+VL+VLRKEK
Sbjct: 1032 MPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEK 1091
Query: 1975 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 1796
L+ANLKKCTF T+ VFLGFV ST G++VDEEK+ AI+EWPSP SV V SFHGLA FYR
Sbjct: 1092 LYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYR 1151
Query: 1795 RFVKDFNSIAAPITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 1616
RFVKDF+++AAP+T+VIKKN GFKW + QE AFQ +K+KLTHAP+ +LP+F K FEI+CD
Sbjct: 1152 RFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECD 1211
Query: 1615 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIH 1436
A G+GIGVVL+Q+ +P+AYFSEKL GA LNYPTYDKE+YALVR+L+T QHYLWPKEFVIH
Sbjct: 1212 ASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIH 1271
Query: 1435 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAK 1256
DHESLKHL+GQ KLNK ARWVEF ETFPYVI+YK+GK+N+VADALSRRY+L+S+LDAK
Sbjct: 1272 TDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAK 1331
Query: 1255 ILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRES 1076
+LGFEHIK LY D DF + Y SCE+ GKY+RH+GFLF +N+LCIPN S+R+L +RE+
Sbjct: 1332 LLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREA 1391
Query: 1075 HGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIP 896
HGGGLMGHFGV+KT+ ++Q+HF+WPHMKRDVERIC RC TC+QAK++ PHGLYTPLPIP
Sbjct: 1392 HGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIP 1451
Query: 895 STPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
S PW DISMDF++GLPR++ G+DS+FVVVDRFSKMAHFIPCH +DA H+A+L R
Sbjct: 1452 SHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFR 1507
Score = 366 bits (939), Expect(2) = 0.0
Identities = 173/243 (71%), Positives = 204/243 (83%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F RE+VRLHGMP+TIVSDRD KFLSYFWKTLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1505 FFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
STLLRA+IKKN+KTWE+CLPHVEFAYN ++HSA+KF PF+IVY FNP TPLDL PLP+SE
Sbjct: 1565 STLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSE 1624
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RV+LDGKKKAE V+QIHE+A+ NIE +T+QYAK ANK R +++F D VW+H+RKERFP
Sbjct: 1625 RVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFP 1684
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKSF 21
+R+SKL+ R DGPF+VL+ IN+NAY LDL G+YNVS +FNV+DL PF + F
Sbjct: 1685 KERKSKLMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVADLFPFIADNTDLRSNPF 1744
Query: 20 SRG 12
G
Sbjct: 1745 QLG 1747
Score = 169 bits (429), Expect(2) = 8e-52
Identities = 87/178 (48%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Frame = -2
Query: 3553 VKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXX 3374
+K + +GK + +R DIK FKCQG GH AS+C NKR+M+++
Sbjct: 635 IKPKVEDQDQKGKGKAVMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGEIESEDEQL 694
Query: 3373 XDFMPPLEDANDEEYAAQG-GDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVI 3197
E ++ E+Y A G+LLV +ALSV AK D + Q EN+FH+ C V +KVCS+I
Sbjct: 695 E------ESSSTEDYEAPSKGELLVTMKALSVIAKTDEQEQRENLFHSSCMVNDKVCSLI 748
Query: 3196 IDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKFCVM 3023
IDGGSCTNVAS MVEKLGL+ KHPRPYKLQWLN+ GE+ V++QV V IGK ++
Sbjct: 749 IDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGKKTIL 806
Score = 64.7 bits (156), Expect(2) = 8e-52
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGS--TCPSQNPSTSAWKSN 3601
MSRF+ GLNR+I + +E+QHYVELE+++H AI E QLKRR S + S PS + +
Sbjct: 566 MSRFMGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERS 625
Query: 3600 HWKKDEKQLMMKPKTE 3553
++KD K +KPK E
Sbjct: 626 GFQKDYKP-FIKPKVE 640
Score = 93.2 bits (230), Expect = 8e-16
Identities = 58/159 (36%), Positives = 86/159 (54%)
Frame = -1
Query: 2939 KYSFVLNQRTITLVPLTPKQVHEDQVILQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*E 2760
K + ++TI LVP+TP +V+ DQ L + KK+ +
Sbjct: 795 KVPLSIGKKTI-LVPMTPHEVYLDQ--LSMKMRKKQTV---------------------- 829
Query: 2759 ENREKNKFL*ASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPK 2580
+ N + S+ K + F + ++ ++KE + ++PS + LQD+ D+FP+
Sbjct: 830 --KPSNLMINESKQKGSGFQSSKLL-FVFKETLMSLTNPEQAIPSKIKFLLQDYTDVFPE 886
Query: 2579 EIPNGLPPIRGIEHQIDFVLGATIPN*PAYRSNPE*TKE 2463
E P GLPPIRGIEHQIDFV GA++PN PAYR+NP TKE
Sbjct: 887 ENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKE 925
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 853 bits (2205), Expect(2) = 0.0
Identities = 402/583 (68%), Positives = 484/583 (83%), Gaps = 1/583 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V L++KGYVRES SPCAV VILVPKKD WRMCVDCRAINNI V+YRHPIPR
Sbjct: 734 TKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPR 793
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS +FSKIDL+S +H+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 794 LDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 853
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMNHVL AFI F+V+YFDDILIYS+ L++H+ H++ VLDVLRKE+L+ANL+KCTFC
Sbjct: 854 FMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFC 913
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ VFLGFV S GIQVDE K+ AI++WP+P +VS V SF GLA FYRRFV+ F++IAA
Sbjct: 914 TDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAA 973
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ KK F+WGE QEKAFQ +K++L+ PL LP+F K FE++CDA G+GIG VL+
Sbjct: 974 PLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLM 1033
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q G+P+AYFSEKL GA LNY YDKE+YALVR+LETWQHYLWPKEFVIH DHE+LK+L+G
Sbjct: 1034 QNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKG 1093
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF ETFPYV++YK+GKENIVADALSR+ +L++ L+ K+ G E IKELY
Sbjct: 1094 QAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELY 1153
Query: 1222 PLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF+E Y C KY H+GFLFR NKLC+P+CSVR LL++E+H GGLMGHFG
Sbjct: 1154 SADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFG 1213
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
KT +L +HFYWP M+RDV+R+ RCVTC +AKS++ PHGLYTPLP+PS PW DISMD
Sbjct: 1214 WRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMD 1273
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 737
F+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH +DASH+A L
Sbjct: 1274 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASL 1316
Score = 341 bits (875), Expect(2) = 0.0
Identities = 157/228 (68%), Positives = 189/228 (82%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F EIVRLHGMP+TIVSDRD KFLSYFWKTLW KLGT+LLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTL 1376
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
S LLRA+IKKN+K WEECLPHVEFAYN +HS T PFE+VY F PL+P+DL PLP+ E
Sbjct: 1377 SMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQE 1436
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
R +++ K+A +VK+IHEK + IE R++ YA ANK R K+ FE D VW+H+RK+RFP
Sbjct: 1437 RSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFP 1496
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPF 57
+R+SKL+PRGDGPF+VL INDNAYK++LP +Y VS+TFNV+DL+PF
Sbjct: 1497 QKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFNVADLTPF 1544
Score = 135 bits (339), Expect(3) = 8e-67
Identities = 79/198 (39%), Positives = 108/198 (54%), Gaps = 9/198 (4%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQK 2850
CDV PM H+LLGRPWQ+DR H G TN+Y+ + + L P+TP+Q+ + LQK
Sbjct: 542 CDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTIKWKGKELILKPMTPQQILAEH--LQK 599
Query: 2849 ESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSN--------- 2697
SE + S R+ K + + A S
Sbjct: 600 SSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDNKKREGENLVMIATKSEMRDVRRNPE 659
Query: 2696 QPMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLG 2517
Q + +L+ K+ +AN L S+PS V LQ+++D+FP+E P GLPP+RGIEHQID + G
Sbjct: 660 QVLFILVCKDTLLSANDLT-SVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPG 718
Query: 2516 ATIPN*PAYRSNPE*TKE 2463
AT+PN PAYR+NPE TKE
Sbjct: 719 ATLPNRPAYRTNPEETKE 736
Score = 131 bits (330), Expect(3) = 8e-67
Identities = 73/180 (40%), Positives = 99/180 (55%)
Frame = -2
Query: 3571 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXX 3392
+E KN +TS G+ KS I+CFKC GRGH+A +C N R +V+
Sbjct: 364 NERKNAANTSSTSVGSSTKSSG-------IQCFKCGGRGHVARECPNNRTIVVNDQGEYE 416
Query: 3391 XXXXXXXDFMPPLEDANDEEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 3212
+ + + + G LV + LSVQ + Q N+F TR VQ+K
Sbjct: 417 STSEEEQEDSEEENNLEKDICEFESGAALVVTQILSVQMSDAENGQRHNLFQTRAKVQDK 476
Query: 3211 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
V VIIDGGSC N+AS MVEKLGL+ KHP PY +QWLN+SG +K+ ++V V F IG++
Sbjct: 477 VVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEY 536
Score = 38.9 bits (89), Expect(3) = 8e-67
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKR-----RGSTCPSQNPSTSA 3613
++RF+ GL+R I VE Q Y L ++VH A K E QL++ RG + ++N ++ +
Sbjct: 269 IARFMSGLHRNIQRIVEFQQYRNLIELVHQASKAERQLQQDMKSNRGVSFSTKNAASGS 327
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 831 bits (2147), Expect(2) = 0.0
Identities = 395/586 (67%), Positives = 473/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPCAV VILVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 731 TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPR 790
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 791 LDDMLDELSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 850
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL FI F+V+YFDDILIYS+++ +H HL+ V + LR +LF NL+KCTFC
Sbjct: 851 FMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFC 910
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FYRRFV+DF++IAA
Sbjct: 911 TDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAA 970
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ + KK F WG QE AF ++K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 971 PLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1030
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+AYFSEKLSG LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1031 QEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1090
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI G E IK+ Y
Sbjct: 1091 QGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQY 1150
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DFN+ C++ T K+ ++GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1151 AHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1210
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
KT IL HF+WP M+RDV R RC TC++AKSR+ PHGLY PLP+P+ PW DISMD
Sbjct: 1211 AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMD 1270
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+KRGRDS+FVVVDRFSKMAHFIPCH +DASH+ADL R
Sbjct: 1271 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFR 1316
Score = 327 bits (837), Expect(2) = 0.0
Identities = 151/239 (63%), Positives = 187/239 (78%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1314 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1373
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPH+EFAYN ++HS TK PF+IVY P P+DL PLP SE
Sbjct: 1374 STMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSE 1433
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
++N D K++AE + ++HE + NIE +Y +KGR ++ FE D VWLH+RKERFP
Sbjct: 1434 KLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFP 1493
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKL+PR DGPF+VL IN+NAYK+DLP ++ VS TFNV+DL P+ +D E ++
Sbjct: 1494 DLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEEDELESRT 1552
Score = 366 bits (940), Expect(2) = e-132
Identities = 205/564 (36%), Positives = 315/564 (55%), Gaps = 33/564 (5%)
Frame = -2
Query: 2329 VKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFK--TKYGLYE*LV 2156
+++ PI R C ++D +H+ GD+ T YGLYE V
Sbjct: 1575 IQHDGPITRARARQLNYQDECPRGRVDA---HHKFAATIGDDRATNPSGFASYGLYEFTV 1631
Query: 2155 MPFGLINAPSTFMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEK 1976
M FGL NAP+ FM LMN V +++ F+V++ DDIL+YSQ+ +DH HL+LVL LR+ +
Sbjct: 1632 MSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQ 1691
Query: 1975 LFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYR 1796
L+A L KC F ++ FLG V S +G+ VD E + A+ +W P +V+ + SF GLA +YR
Sbjct: 1692 LYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYR 1751
Query: 1795 RFVKDFNSIAAPITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCD 1616
RF+++F+ IA P+T+++KK F W + EKAFQ +K+KL +P+ LP+ K F + CD
Sbjct: 1752 RFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCD 1811
Query: 1615 ALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIH 1436
A G+G VL+QEG +AY S +L NYPT+D E+ A+V +L+ W+HYL I+
Sbjct: 1812 ASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIY 1871
Query: 1435 IDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI-------- 1280
DH+SLK++ Q LN + RW+E + + I Y GK N+VADALSR+
Sbjct: 1872 TDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLGVRG 1931
Query: 1279 --------------------LISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKY 1160
++TL+AK + I+E D D ++ ++ +
Sbjct: 1932 IPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGF 1991
Query: 1159 FRHE-GFLFRENKLCIPNC-SVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRD 986
E G L+ N++C+P+ ++ L+++E+H H G K L+E ++W MKR+
Sbjct: 1992 IEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKRE 2051
Query: 985 VERICGRCVTCRQAKS-RVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVV 809
+ C C++ K+ P GL PL +P W +I MDF+ GLP+++ G DS++VVV
Sbjct: 2052 IAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVV 2111
Query: 808 DRFSKMAHFIPCHNMNDASHVADL 737
DR +K+A FIP + +A+L
Sbjct: 2112 DRLTKVARFIPVKTTYGGNKLAEL 2135
Score = 137 bits (346), Expect(2) = e-132
Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 4/229 (1%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
+ IV LHG+P+ IVSDR+++F S+FWK L +LGT+L FST HPQTDGQ E +N+ L
Sbjct: 2136 YFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQIL 2195
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
+L A + KTW++ LP+ EF+YN + ++ + P+E +Y TPL + S+
Sbjct: 2196 EDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQ 2255
Query: 380 RVNLDGKKKAEF-VKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKER- 207
D ++AE V+ I + N++ + A+ R + F +D+V+L + R
Sbjct: 2256 VFGTDILREAEAKVRTIWD----NLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRG 2311
Query: 206 -FPTQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEY-NVSATFNVSDL 66
Q + KL PR GPF+++ + AY+L+LP NV F+VS L
Sbjct: 2312 VHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQL 2360
Score = 138 bits (347), Expect(3) = 2e-65
Identities = 81/197 (41%), Positives = 113/197 (57%), Gaps = 6/197 (3%)
Frame = -1
Query: 3035 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI- 2859
V CDVVPMQA ++LLGRPWQFDR H G +N+YSF+ + + I L ++P+ + D V
Sbjct: 553 VECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDDVAK 612
Query: 2858 ---LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*A--SEIKRAMFSNQ 2694
+ ES+KK + E K K L A S+I + S
Sbjct: 613 AAKSKCESDKKAQSDG----------------KKPETINLKPKCLLATKSDINELIASPS 656
Query: 2693 PMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGA 2514
L+ K+A + + + SLP +V + LQ++ D+FPKE+P GLPP+RGIEHQID + GA
Sbjct: 657 VAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGA 716
Query: 2513 TIPN*PAYRSNPE*TKE 2463
++PN YR+NPE TKE
Sbjct: 717 SLPNRAPYRTNPEETKE 733
Score = 121 bits (303), Expect(3) = 2e-65
Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Frame = -2
Query: 3544 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDF 3365
+A S +ST R D++C +C+G GH+ C +KRV+V++ D
Sbjct: 370 KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 429
Query: 3364 MPPL------EDANDEEYAAQGGD---LLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 3212
+ L + +E A D L+ +R LS Q ++ + Q +F T+C V+ +
Sbjct: 430 LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 489
Query: 3211 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
C +IIDGGSC N+AS+ MVEKL L T HP PY +QWLN+SG+ KV K V ++F IG +
Sbjct: 490 CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNY 549
Score = 42.0 bits (97), Expect(3) = 2e-65
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSAWKSNHW 3595
M+RFL GLNREI + V+ + Y + + H+A K E +++ R + S + SA K++ W
Sbjct: 279 MARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRA---SAKANFSAGKTSSW 335
Query: 3594 K 3592
+
Sbjct: 336 Q 336
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 829 bits (2141), Expect(2) = 0.0
Identities = 392/586 (66%), Positives = 474/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPC++ V+LVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 759 TKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPR 818
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 819 LDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 878
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
F+RLMN VL AFI F+V+YFDDILIYS++++DH HL+ V D LR E+LF NL+KCTFC
Sbjct: 879 FIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFC 938
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRRFVKDF++IAA
Sbjct: 939 TDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAA 998
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 999 PLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1058
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+ YFSEKLSG +LNY TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1059 QEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1118
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI G E IKE Y
Sbjct: 1119 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + +C+E T K+ GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1179 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFG 1238
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V KT IL +HF+WP M+RDVER RC TC++AK R+ PHGLY PLP+PS PW DISMD
Sbjct: 1239 VKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMD 1298
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1299 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 322 bits (826), Expect(2) = 0.0
Identities = 153/239 (64%), Positives = 183/239 (76%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPHVEFAYN + HS TK PFEIVY P P+DL PLP SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 1461
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RVN D K AE + ++HE + NIE +Y +KG+ + FE D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKLLPR DGPF+VL+ INDN YKL+LP ++ VS TFN++DL P+ +D E ++
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDNTYKLELPADFGVSPTFNIADLKPYLGEEDELESRT 1580
Score = 132 bits (332), Expect(3) = 7e-63
Identities = 78/196 (39%), Positives = 104/196 (53%), Gaps = 7/196 (3%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVIL-- 2856
CDVVPMQA + LGRPWQFD+ H G +N+YSFV N + + L P++P+ + +D++
Sbjct: 566 CDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARAS 625
Query: 2855 -QKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNK----FL*ASEIKRAMFSNQP 2691
QK E + Q +N K K S++
Sbjct: 626 KQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVV 685
Query: 2690 MIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGAT 2511
L+ KE F SLP V + LQ++ DIFPKE+P GLPPIRGIEHQID + GA+
Sbjct: 686 CYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGAS 745
Query: 2510 IPN*PAYRSNPE*TKE 2463
+PN YR+NPE TKE
Sbjct: 746 LPNRAPYRTNPEETKE 761
Score = 123 bits (308), Expect(3) = 7e-63
Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Frame = -2
Query: 3541 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFM 3362
A + S +S+ R DI+C +C+G GH+ C + RVM++R +
Sbjct: 378 AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 437
Query: 3361 PPLEDAN---------DEEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 3221
L N DEE+ AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 438 ALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497
Query: 3220 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 3041
+ + C VIID GSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 3040 GKF 3032
G +
Sbjct: 558 GSY 560
Score = 37.0 bits (84), Expect(3) = 7e-63
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSAWKSNHW 3595
M+RF+ GLNREI + + + Y + + H+A K E +++ R + S + SA +++ W
Sbjct: 281 MARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRA---SFRTNISAGRASSW 337
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 829 bits (2141), Expect(2) = 0.0
Identities = 398/605 (65%), Positives = 482/605 (79%), Gaps = 4/605 (0%)
Frame = -2
Query: 2530 ISCSVP---PFQTDQLIGVTPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMC 2360
+S S+P P++T+ T QR+V EL++KGYVRES SPC+V V+LVPKKD WRMC
Sbjct: 55 VSASLPNRAPYRTNP--EETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMC 112
Query: 2359 VDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTK 2180
VDCRAINNI ++YRHPIPRLDDMLDEL GS VF KIDL+S YH+IRMK GDEWKT FKTK
Sbjct: 113 VDCRAINNITIRYRHPIPRLDDMLDELSGSLVFCKIDLRSGYHQIRMKLGDEWKTAFKTK 172
Query: 2179 YGLYE*LVMPFGLINAPSTFMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLV 2000
+GLYE LVMPFGL NAPSTFMRLMN VL AFI F+V+YFDDILIYS++++DH HL+ V
Sbjct: 173 FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAV 232
Query: 1999 LDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SF 1820
D LR +LF NL+KCTFCT++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF
Sbjct: 233 FDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSF 292
Query: 1819 HGLASFYRRFVKDFNSIAAPITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFA 1640
GLA FYR FVKDF++IAAP+ ++ K+N F W Q AF +K KLTHAPL LP+F
Sbjct: 293 LGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFN 352
Query: 1639 KAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYL 1460
K FE++CDA G+G+G VL+QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQHYL
Sbjct: 353 KTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYL 412
Query: 1459 WPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYI 1280
WPKEFVIH DHESLKH+R Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY
Sbjct: 413 WPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYA 472
Query: 1279 LISTLDAKILGFEHIKELYPLDHDFNEEYESC-EETTNGKYFRHEGFLFRENKLCIPNCS 1103
++S LD KI G E IKE Y D DF + +C E T K+ GF+FR NKLCIP S
Sbjct: 473 MLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASS 532
Query: 1102 VRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPH 923
VR LL++E+HGGGLMGHFGV KT IL +HF+WP M+RDVER RC TC++AKSR+ PH
Sbjct: 533 VRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPH 592
Query: 922 GLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVA 743
GLY PLP+PS PW DISMDF+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVA
Sbjct: 593 GLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVA 652
Query: 742 DLLGR 728
DL R
Sbjct: 653 DLFFR 657
Score = 307 bits (787), Expect(2) = 0.0
Identities = 146/219 (66%), Positives = 171/219 (78%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 655 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 714
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPHVEFAYN + HS TK PFEIVY P P+DL PLP SE
Sbjct: 715 STMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 774
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RVN D K +AE + ++HE + NIE +Y +KG+ + FE D VWLH+RK+RFP
Sbjct: 775 RVNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 834
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSAT 84
R+SKL PR DGPF+VL+ INDNAYKL+LP ++ VS T
Sbjct: 835 NLRKSKLQPRADGPFKVLQKINDNAYKLELPADFGVSPT 873
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 827 bits (2137), Expect(2) = 0.0
Identities = 391/586 (66%), Positives = 475/586 (81%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPCAV VILVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 734 TKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPR 793
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL G+ VFSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 794 LDDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 853
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS+++D+H+ H++ V + LR +LF NL+KCTFC
Sbjct: 854 FMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFC 913
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AI WP P +++ V SF GLA FYRRFVKDF++IAA
Sbjct: 914 TDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAA 973
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ KK F WG+ QE AF ++K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 974 PLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1033
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+AYFSEKLSG+ LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1034 QEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1093
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKENI+ADALSRRY L++ LD KI G E IK+ Y
Sbjct: 1094 QGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQY 1153
Query: 1222 PLDHDFNEEYESCEETTN-GKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + C++ KY +GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1154 VHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1213
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
KT IL HF+WP M+RDV R+ RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1214 AKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMD 1273
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+++GRDSVFVVVDRFSKMAHFIPCH +DA+H+ADL R
Sbjct: 1274 FVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFR 1319
Score = 327 bits (837), Expect(2) = 0.0
Identities = 151/228 (66%), Positives = 184/228 (80%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRDAKFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1317 FFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1376
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WE+CLPH+EFAYN ++HS TK PF+IVY P P+DL PLP SE
Sbjct: 1377 STMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSE 1436
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
++N D ++AE + ++HE + NIE +Y ++KGR +I FE D VWLH+RKERFP
Sbjct: 1437 KLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFP 1496
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPF 57
R+SKLLPR DGPF+VLE INDNAY+LDLP ++ VS TFN++DL P+
Sbjct: 1497 ELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGVSPTFNIADLKPY 1544
Score = 132 bits (333), Expect(3) = 3e-66
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 3/197 (1%)
Frame = -1
Query: 3044 YRKVL-CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHED 2868
YR V+ CDVVPM A ++LLGRPWQFD H G +N+YS + + + I L+P++P+ + D
Sbjct: 552 YRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRD 611
Query: 2867 QV--ILQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSNQ 2694
V + ++E K I ++ +++ S
Sbjct: 612 DVAKATKAKTENNKNIKVVGNNKDGIKLKGHCLLAT------------KTDVNELFASTT 659
Query: 2693 PMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGA 2514
L+ K+A + + SLP + + LQ++ D+FP EIP GLPPIRGIEHQID + GA
Sbjct: 660 VAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGA 719
Query: 2513 TIPN*PAYRSNPE*TKE 2463
++PN YR+NPE TKE
Sbjct: 720 SLPNRAPYRTNPEETKE 736
Score = 129 bits (324), Expect(3) = 3e-66
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 10/186 (5%)
Frame = -2
Query: 3559 NRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXX 3380
N K A S +ST R D+ C++C+G GH+ C N+RV+V++
Sbjct: 367 NSATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASD 426
Query: 3379 XXXDFMPPL--EDANDEEYA--------AQGGDLLVARRALSVQAKEDGEVQLENIFHTR 3230
+ L +DA +E A+ + L+ +R LS Q ++ + Q +F T+
Sbjct: 427 LDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTK 486
Query: 3229 CHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 3050
C ++ + C +IIDGGSC N+AS+ MVEKL L T HP PY +QWLN+SG+VKV K V ++
Sbjct: 487 CVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRIN 546
Query: 3049 FCIGKF 3032
F IG +
Sbjct: 547 FAIGSY 552
Score = 41.6 bits (96), Expect(3) = 3e-66
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSAWKSNHW 3595
M+RFL GLNREI + + + Y + + H+A K E +++ R ++ S + SA KS W
Sbjct: 273 MARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARS---NVSAGKSTPW 329
Query: 3594 KK 3589
++
Sbjct: 330 QQ 331
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 827 bits (2137), Expect(2) = 0.0
Identities = 394/586 (67%), Positives = 472/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPC+V V+LVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 759 TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPR 818
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 819 LDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 878
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++++DH HL+ V D LR +LF NL+KCTFC
Sbjct: 879 FMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFC 938
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FL +V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRRFVKDF++IAA
Sbjct: 939 TDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAA 998
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE +CDA G+G+G VL+
Sbjct: 999 PLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLL 1058
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1059 QEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1118
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI G E IKE Y
Sbjct: 1119 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF +C+E T K+ GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1179 AHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFG 1238
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V KT IL +HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1239 VKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1298
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1299 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 321 bits (822), Expect(2) = 0.0
Identities = 152/239 (63%), Positives = 183/239 (76%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTK LFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTL 1401
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPHVEFAYN + HS TK PFEIVY P P+DL P P SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSE 1461
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RVN D K +AE + ++HE + NIE +Y +KG+ + FE D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKLLPR DGPF+VL+ INDNAYKL+LP ++ VS TFN++DL P+ +D E ++
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRT 1580
Score = 134 bits (336), Expect(3) = 3e-64
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVIL-- 2856
CDVVPMQA +LLGRPWQFD+ H G +N+YSFV N + + L P++P+ + +D++
Sbjct: 566 CDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARAS 625
Query: 2855 -QKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNK----FL*ASEIKRAMFSNQP 2691
QK E + Q +N K K S++
Sbjct: 626 KQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVV 685
Query: 2690 MIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGAT 2511
L+ KE F SLP V + LQ++ DIFPKE+P GLPPIRGIEHQID + GA+
Sbjct: 686 CYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGAS 745
Query: 2510 IPN*PAYRSNPE*TKE 2463
+PN YR+NPE TKE
Sbjct: 746 LPNRAPYRTNPEETKE 761
Score = 125 bits (315), Expect(3) = 3e-64
Identities = 70/183 (38%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Frame = -2
Query: 3541 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFM 3362
A + S +S+ R DI+C +C+G GH+ C + RVM++R +
Sbjct: 378 AATPSKTSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETY 437
Query: 3361 PPLEDAN---------DEEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 3221
L N DEE+ AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 438 ALLATNNAREGDAPHQDEEHIGAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 497
Query: 3220 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 3041
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 3040 GKF 3032
G +
Sbjct: 558 GSY 560
Score = 37.4 bits (85), Expect(3) = 3e-64
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSAWKSNHW 3595
M+RF+ GLNREI + + + Y + + H+A K E +++ R + S + SA +++ W
Sbjct: 281 MARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRA---SFRTNISAGRASSW 337
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 823 bits (2126), Expect(2) = 0.0
Identities = 391/586 (66%), Positives = 471/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPC+V V+LVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 759 TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPR 818
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSKIDL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 819 LDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 878
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++++DH HL+ V D LR +LF NL+KCTFC
Sbjct: 879 FMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFC 938
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYRRFVKDF++IAA
Sbjct: 939 TDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAA 998
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 999 PLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1058
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+AYFSEKLSG +LNY TYDKE++ALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1059 QEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1118
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q K N+ A+WVEF E+FPYVI++K+GKEN++ADALSRRY ++S LD KI G E IKE Y
Sbjct: 1119 QAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + +C+E T K+ GF+FR NKLCIP SV LL++E+HGGGLMGHFG
Sbjct: 1179 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFG 1238
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V K IL +HF+WP +RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1239 VKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1298
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1299 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344
Score = 325 bits (833), Expect(2) = 0.0
Identities = 154/239 (64%), Positives = 185/239 (77%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPHVEFAYN + HS TK PFEIVY P P+DL PLP SE
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSE 1461
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RVN D K +AE + ++HE + NIE +Y +KG+ + FE D VWLH+RK+RFP
Sbjct: 1462 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1521
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKLLPR DGPF+VL+ INDNAYKL+LP ++ VS TFN++DL P+ +D E ++
Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRT 1580
Score = 129 bits (325), Expect(3) = 2e-63
Identities = 78/196 (39%), Positives = 104/196 (53%), Gaps = 7/196 (3%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVIL-- 2856
CDVVPMQA +LLGRPWQFD+ H G +N+YSFV N + + L P++P+ + +D++
Sbjct: 566 CDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARAS 625
Query: 2855 -QKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNK----FL*ASEIKRAMFSNQP 2691
QK E + Q +N K K S++
Sbjct: 626 KQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVF 685
Query: 2690 MIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGAT 2511
L+ KE F SL V + LQ++ DIFPKE+P GLPPIRGIEHQID + GA+
Sbjct: 686 CYALVCKETLFPIEDTPISLRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGAS 745
Query: 2510 IPN*PAYRSNPE*TKE 2463
+PN YR+NPE TKE
Sbjct: 746 LPNRAPYRTNPEETKE 761
Score = 128 bits (322), Expect(3) = 2e-63
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 13/183 (7%)
Frame = -2
Query: 3541 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFM 3362
A + S +S+ R DI+C +C+G GH+ C + RVM++R +
Sbjct: 378 AATPSKSSSSVASSGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETY 437
Query: 3361 PPLEDAN---------DEEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 3221
L N DEE+ AA+ + LV +R LS Q + + QL +F T+C +
Sbjct: 438 ALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVVQRVLSAQMERAEQNQLHTLFQTKCVI 497
Query: 3220 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCI 3041
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+VKV + V V F I
Sbjct: 498 KERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI 557
Query: 3040 GKF 3032
G +
Sbjct: 558 GSY 560
Score = 35.8 bits (81), Expect(3) = 2e-63
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPS--TSAWKSN 3601
M+RF+ GLNREI + + + Y + + H+A K E +++ R ++ + + S+W S+
Sbjct: 281 MARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAGCASSWTSS 340
Query: 3600 H 3598
+
Sbjct: 341 N 341
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 821 bits (2120), Expect(2) = 0.0
Identities = 390/586 (66%), Positives = 470/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPC+V V+LVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 655 TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPR 714
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSKIDL S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 715 LDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 774
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++++DH HL+ V D LR +LF NL+KCTFC
Sbjct: 775 FMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFC 834
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AI WP PT+++ V SF GLA FYR FVKDF++IAA
Sbjct: 835 TDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAA 894
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ K+N F W Q AF +K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 895 PLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 954
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+P+AYFSEKLSG +LNY TYDK+++ALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 955 QEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1014
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKEN++ DALSRRY ++S LD KI G E IKE Y
Sbjct: 1015 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQY 1074
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + +C+E T K+ GF+FR NKLCIP SV LL++E+HGGGLMGHFG
Sbjct: 1075 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFG 1134
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V KT IL +H +WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1135 VKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1194
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA+HVADL R
Sbjct: 1195 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1240
Score = 320 bits (821), Expect(2) = 0.0
Identities = 152/239 (63%), Positives = 183/239 (76%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ EVVNRT+
Sbjct: 1238 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTV 1297
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPHVEFAYN + HS TK PFEIVY P P+DL PLP E
Sbjct: 1298 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLE 1357
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
RVN D K +AE + ++HE + NIE +Y +KG+ + FE D VWLH+RK+RFP
Sbjct: 1358 RVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFP 1417
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKL PR DGPFQVL+ INDNAYKL+LP ++ VS TFN++DL P+ +D E ++
Sbjct: 1418 NLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRT 1476
Score = 112 bits (281), Expect(2) = 5e-25
Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Frame = -2
Query: 3541 ATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFM 3362
A + S +S R DI+C +C+G GH+ C + RVM++R +
Sbjct: 360 AATPSKSSSSVASLGRTRDIQCLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETY 419
Query: 3361 PPLEDAN---------DEEY----AAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHV 3221
L N DEE+ AA+ + LV +R LS Q + + Q +F T+C +
Sbjct: 420 ALLATNNAGEGDAPHQDEEHIKAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVI 479
Query: 3220 QNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVS 3050
+ + C VIIDGGSC N+AS MVEKL L T HP+PY +QWLN SG+ + L++
Sbjct: 480 KERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKEHTRSEHLIA 536
Score = 32.0 bits (71), Expect(2) = 5e-25
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRR 3652
M+RF+ LNREI + + + Y + + H+A K E +++ R
Sbjct: 281 MARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGR 321
Score = 86.7 bits (213), Expect = 8e-14
Identities = 42/73 (57%), Positives = 51/73 (69%)
Frame = -1
Query: 2681 LLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN 2502
L+ KE F SLP V + LQ++ DIFPKE+P GLPPIRGIEHQID + GA++PN
Sbjct: 585 LVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPN 644
Query: 2501 *PAYRSNPE*TKE 2463
YR+NPE TKE
Sbjct: 645 RAPYRTNPEETKE 657
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 820 bits (2117), Expect(2) = 0.0
Identities = 389/586 (66%), Positives = 475/586 (81%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T R+V EL++KGY+RES SPCAV +ILVPKKD RMCVDCR INNI ++YRHPIPR
Sbjct: 775 TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPR 834
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 835 LDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPST 894
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++L++HL HL+ V LR +LF NL KCTFC
Sbjct: 895 FMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFC 954
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRRFV+DF++IAA
Sbjct: 955 TDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAA 1014
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ +V KK+ F WG QE+AF ++K KLT+APL LPNF K FE++CDA G+G+G VL+
Sbjct: 1015 PLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLL 1074
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q+G+P+AYFSEK SG +LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++
Sbjct: 1075 QDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKS 1134
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF ETFPYVI++K+GKEN++ADALSRRY ++S LD KI G E IK+ Y
Sbjct: 1135 QAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQY 1194
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D +F + ++C+E T K+ ++GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1195 VHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1254
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V KT IL HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1255 VKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMD 1314
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA +VADL R
Sbjct: 1315 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFR 1360
Score = 320 bits (821), Expect(2) = 0.0
Identities = 148/233 (63%), Positives = 181/233 (77%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REI+RLHG+P TIVSDRD KFLS+FW+ LW KLG KLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1358 FFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTL 1417
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++K N K WEECLPH+EFAYN ++HS TK PFEIVY F P P+DL PLP SE
Sbjct: 1418 STMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSE 1477
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+VN D K+++E + +IHE + NIE +Y +KGR +VF D VWLH+RK+RFP
Sbjct: 1478 KVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFP 1537
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
R+SKL+PR DGPF+VLE INDNAYKL+LP ++ VS TFN++DL P+ +D
Sbjct: 1538 NLRKSKLMPRADGPFKVLEKINDNAYKLELPADFGVSPTFNIADLKPYLGEED 1590
Score = 137 bits (345), Expect(2) = 1e-58
Identities = 80/195 (41%), Positives = 111/195 (56%), Gaps = 6/195 (3%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI--- 2859
CDVVPMQA LLLGRPWQFD+ H N Y+ V + ITL+P+TP+ + +D +
Sbjct: 583 CDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVHKDKNITLLPMTPESILKDDINRAN 642
Query: 2858 -LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*A--SEIKRAMFSNQPM 2688
++E K + + S E + K+ L A S+I FS
Sbjct: 643 KAKQEKNKSENQIVAKEFEQQMQSNNNKQSSVACEIKLKSACLLATKSDIDDLDFSKSVC 702
Query: 2687 IVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATI 2508
+ KEA F+ + +SLP +V + LQ+F D+FP+++P GLPPIRGIEHQID + GA++
Sbjct: 703 YAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASL 762
Query: 2507 PN*PAYRSNPE*TKE 2463
PN YR+NPE TKE
Sbjct: 763 PNRAPYRTNPEETKE 777
Score = 119 bits (299), Expect(2) = 1e-58
Identities = 74/197 (37%), Positives = 105/197 (53%), Gaps = 15/197 (7%)
Frame = -2
Query: 3577 TYDEAKNRVKKEATSHGNQGKSDSS---TSRNHDIKCFKCQGRGHIASQCLNKRVMVLRX 3407
T +A++ + ++T G S SS T + HDI C +C+G GH A +C +KRVM++
Sbjct: 381 TIKQAQSPLSAKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECPSKRVMIVSE 440
Query: 3406 XXXXXXXXXXXXDFMPPLE------DANDEEYA------AQGGDLLVARRALSVQAKEDG 3263
+ + + D +D E A + LVA+R LSVQ +
Sbjct: 441 DGGYESASDYDEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRVLSVQVTQAE 500
Query: 3262 EVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSG 3083
+ Q N+FHT+ V+ + VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG
Sbjct: 501 QNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNSG 560
Query: 3082 EVKVNKQVLVSFCIGKF 3032
+VKV + V V F I +
Sbjct: 561 KVKVTRTVRVHFSISTY 577
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 819 bits (2116), Expect(2) = 0.0
Identities = 387/586 (66%), Positives = 473/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T R+V EL++KGY+RES SPCAV +ILVPKKD RMCVDCR INNI ++YRHPIPR
Sbjct: 787 TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPR 846
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 847 LDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 906
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++L+DHL HL+ V LR +LF NL KCTFC
Sbjct: 907 FMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFC 966
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF GLA FYRRFV+DF++IAA
Sbjct: 967 TDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAA 1026
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ KK+ + WG QE+AF ++K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 1027 PLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1086
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++
Sbjct: 1087 QDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKS 1146
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF ETFPYVI+ K+GK+N++ADALSRRY ++S LD KI G E IK+ Y
Sbjct: 1147 QAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQY 1206
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + E+C E T K+ + GF+FR NKLCIP S+R LL++E+HGGGLMGHFG
Sbjct: 1207 VHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFG 1266
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V K +L HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1267 VKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1326
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA++VADL R
Sbjct: 1327 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1372
Score = 319 bits (817), Expect(2) = 0.0
Identities = 146/233 (62%), Positives = 183/233 (78%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REI+RLHG+P TIVSDRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1370 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1429
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++K N+K WEECLPH+EFAYN ++HS TK PFEIVY F P P+DL P+P SE
Sbjct: 1430 STMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSE 1489
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+VN D K++AE + ++HE + NIE +Y +KGR +VF D VWLH+RK+RFP
Sbjct: 1490 KVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFP 1549
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
R+SKL+PR GPF+VLE INDNAY+L+LP ++ VS TFN++DL P+ +D
Sbjct: 1550 DLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFGVSPTFNIADLKPYLGEED 1602
Score = 137 bits (344), Expect(2) = 8e-58
Identities = 76/194 (39%), Positives = 112/194 (57%), Gaps = 5/194 (2%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQK 2850
CDVVPMQA +LLGRPWQFD+ H G TN+Y+ V + ITL+P++P+ + +D +
Sbjct: 596 CDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARAS 655
Query: 2849 ESEK---KKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*A--SEIKRAMFSNQPMI 2685
++++ K S E + K+ L A S+I +
Sbjct: 656 KAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCY 715
Query: 2684 VLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIP 2505
+ KE F+ + +SLP +V++ LQ+F D+FP+++P GLPPIRGIEHQID + GA++P
Sbjct: 716 AFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLP 775
Query: 2504 N*PAYRSNPE*TKE 2463
N YR+NPE TKE
Sbjct: 776 NRAPYRTNPEETKE 789
Score = 117 bits (293), Expect(2) = 8e-58
Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Frame = -2
Query: 3526 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFMPPL-- 3353
+ S +ST + H++ C +C+G GH A +C +KRVM++ + + +
Sbjct: 414 SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 473
Query: 3352 ------EDANDEEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 3203
+ A + +Y A + LVA+R LSVQ + + Q N+FHT+ V+ +
Sbjct: 474 EERGVXDTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 533
Query: 3202 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG+VKV + V V F I +
Sbjct: 534 VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATY 590
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 818 bits (2112), Expect(2) = 0.0
Identities = 389/586 (66%), Positives = 469/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL++KGYVRES SPCAV VILVPKKD WRMCVDCRAINNI ++YRHPIPR
Sbjct: 710 TKEIQRQVHELLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPR 769
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS VFSK++L+S YH+I MK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 770 LDDMLDELSGSIVFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 829
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL FI F+V+YFDDILIYS+++ +H HL+ V + LR +LF NL+KCTFC
Sbjct: 830 FMRLMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFC 889
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ K+ AIQ WP+P +VS V SF GLA FY RFV+DF++IAA
Sbjct: 890 TDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAA 949
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ + KK F WG QE AF ++K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 950 PLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1009
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QEG+ +AYFSEKLSG LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH+R
Sbjct: 1010 QEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1069
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF E+FPYVI++K+GKENI+A+ALSRRY L++ LD KI G E IK+ Y
Sbjct: 1070 QGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQY 1129
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DFN+ C++ T K+ ++GF+FR NKLCIP SVR LL++E+HGGGLMGHFG
Sbjct: 1130 AHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1189
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
KT IL HF+WP M+RDV R RC TC++AKSR+ PHGLY PLP+P+ PW DISMD
Sbjct: 1190 AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMD 1249
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+KRGRDS+FVVVDRFSKM HFIPCH +DASH+ADL R
Sbjct: 1250 FVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFR 1295
Score = 323 bits (829), Expect(2) = 0.0
Identities = 150/239 (62%), Positives = 187/239 (78%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+P TIVSDRD KFLS+FW+TLW KLGTKLLFSTTCHPQTDGQ+EVVNRTL
Sbjct: 1293 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTL 1352
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++KKNIK WEECLPH+EFA N ++HS TK PF+IVY P P+DL PLP SE
Sbjct: 1353 STMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPSSE 1412
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
++N D K++AE + ++HE + NIE +Y +KGR ++ FE D VWLH+RKERFP
Sbjct: 1413 KLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFP 1472
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD*FEDKS 24
R+SKL+PR DGPF+VL IN+NAYK+DLP ++ VS TFNV+DL P+ +D E ++
Sbjct: 1473 DLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEEDELESRT 1531
Score = 141 bits (355), Expect(3) = 2e-65
Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 6/197 (3%)
Frame = -1
Query: 3035 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI- 2859
V CDVVPMQA ++LLGRPWQFDR H G +N+YSF+ + + I L P++P+ + D V
Sbjct: 532 VECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAK 591
Query: 2858 ---LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*A--SEIKRAMFSNQ 2694
+ ES+KK + E K K L A S+I + S
Sbjct: 592 AAKSKCESDKKAQSDG----------------KKPETINLKPKCLLATKSDINELIASPS 635
Query: 2693 PMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGA 2514
L+ K+A + + + SLP +V + LQ++ D+FPKE+P GLPP+RGIEHQID + GA
Sbjct: 636 VAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGA 695
Query: 2513 TIPN*PAYRSNPE*TKE 2463
++PN YR+NPE TKE
Sbjct: 696 SLPNRAPYRTNPEETKE 712
Score = 118 bits (295), Expect(3) = 2e-65
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Frame = -2
Query: 3544 EATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDF 3365
+A S +ST R D++C +C+G GH+ C +KRV+V++ D
Sbjct: 349 KAAQPAPSASSMASTGRMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDT 408
Query: 3364 MPPL------EDANDEEYAAQGGD---LLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 3212
+ L + +E A D L+ +R LS Q ++ + Q +F T+C V+ +
Sbjct: 409 LALLAADHADNEPPEEHIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKER 468
Query: 3211 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
C +IIDGGSC N+AS+ MVEKL L T HP Y +QWLN+SG+ KV K V ++F IG +
Sbjct: 469 CCRMIIDGGSCNNLASSEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNY 528
Score = 42.0 bits (97), Expect(3) = 2e-65
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSAWKSNHW 3595
M+RFL GLNREI + V+ + Y + + H+A K E +++ R + S + SA K++ W
Sbjct: 258 MARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRA---SAKANFSAGKTSSW 314
Query: 3594 K 3592
+
Sbjct: 315 Q 315
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 816 bits (2108), Expect(2) = 0.0
Identities = 385/586 (65%), Positives = 472/586 (80%), Gaps = 1/586 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T R+V EL++KGY+RES SPCAV +ILVPKKD RMCVDCR INNI ++ RHPIPR
Sbjct: 790 TKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPR 849
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDEL GS +FSK+DL+S YH+IRMK GDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 850 LDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 909
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMN VL AFI F+V+YFDDILIYS++L+DHL HL+ V LR +LF NL KCTFC
Sbjct: 910 FMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFC 969
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
T++ FLG+V + QGI+VD+ KI AI+ WP P +V+ V SF G A FYRRFV+DF++IAA
Sbjct: 970 TDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAA 1029
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+ ++ KK+ + WG QE+AF ++K KLTHAPL LP+F K FE++CDA G+G+G VL+
Sbjct: 1030 PLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 1089
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q+G+P+AYFSEKLSG +LNY TYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKH++
Sbjct: 1090 QDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKS 1149
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF ETFPYVI++K+GK+N++ADALSRRY ++S LD KI G E IK+ Y
Sbjct: 1150 QAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQY 1209
Query: 1222 PLDHDFNEEYESCEE-TTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFG 1046
D DF + E+C E T K+ + GF+FR NKLCIP S+R LL++E+HGGGLMGHFG
Sbjct: 1210 VHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFG 1269
Query: 1045 VAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMD 866
V K +L HF+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMD
Sbjct: 1270 VKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1329
Query: 865 FMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
F+LGLPR+K+GRDS+FVVVDRFSKMAHFIPCH +DA++VADL R
Sbjct: 1330 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFR 1375
Score = 320 bits (821), Expect(2) = 0.0
Identities = 147/233 (63%), Positives = 183/233 (78%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REI+RLHG+P TIVSDRDAKFLS+FW+ LW KLGTKLLFSTTCHPQTDGQ EVVNR+L
Sbjct: 1373 FFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSL 1432
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST+LRA++K NIK WEECLPH+EFAYN ++HS TK PFEIVY F P P+DL P+P SE
Sbjct: 1433 STMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSE 1492
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+VN D K++AE + ++HE + NIE +Y +KGR +VF D VWLH+RK+RFP
Sbjct: 1493 KVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFP 1552
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
R+SKL+PR GPF+VLE INDNAY+L+LP ++ VS TFN++DL P+ +D
Sbjct: 1553 DLRKSKLMPRAGGPFKVLEKINDNAYRLELPADFGVSPTFNIADLKPYLGEED 1605
Score = 137 bits (344), Expect(2) = 8e-58
Identities = 76/194 (39%), Positives = 112/194 (57%), Gaps = 5/194 (2%)
Frame = -1
Query: 3029 CDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVILQK 2850
CDVVPMQA +LLGRPWQFD+ H G TN+Y+ V + ITL+P++P+ + +D +
Sbjct: 599 CDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARAS 658
Query: 2849 ESEK---KKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*A--SEIKRAMFSNQPMI 2685
++++ K S E + K+ L A S+I +
Sbjct: 659 KAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCY 718
Query: 2684 VLLYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIP 2505
+ KE F+ + +SLP +V++ LQ+F D+FP+++P GLPPIRGIEHQID + GA++P
Sbjct: 719 AFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLP 778
Query: 2504 N*PAYRSNPE*TKE 2463
N YR+NPE TKE
Sbjct: 779 NRAPYRTNPEETKE 792
Score = 117 bits (293), Expect(2) = 8e-58
Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Frame = -2
Query: 3526 NQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFMPPL-- 3353
+ S +ST + H++ C +C+G GH A +C +KRVM++ + + +
Sbjct: 417 SSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDYDEETLALIAS 476
Query: 3352 ------EDANDEEYAAQGG----DLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCS 3203
+ A + +Y A + LVA+R LSVQ + + Q N+FHT+ V+ +
Sbjct: 477 EERGVADTAQETQYMAADYADRYESLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVR 536
Query: 3202 VIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
VIIDGGSC N+AS MVEKL L T HP PY +QW N+SG+VKV + V V F I +
Sbjct: 537 VIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIATY 593
>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
Length = 1215
Score = 798 bits (2060), Expect(4) = 0.0
Identities = 369/537 (68%), Positives = 449/537 (83%)
Frame = -2
Query: 2386 KKDRLWRMCVDCRAINNIMVKYRHPIPRLDDMLDELHGSCVFSKIDLKSEYHRIRMKEGD 2207
+KD WRMC DCRAINN+ VKY HPIPRLDDMLDELHGS +FSKIDLKS YH+IRM EGD
Sbjct: 464 QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGD 523
Query: 2206 EWKTKFKTKYGLYE*LVMPFGLINAPSTFMRLMNHVLHAFIENFLVIYFDDILIYSQNLD 2027
EWKT FKTK+GLYE LVMPFGL +APSTFMRLMNHVL AFI F+++YFDDIL+YS++L
Sbjct: 524 EWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLR 583
Query: 2026 DHLMHLKLVLDVLRKEKLFANLKKCTFCTNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSP 1847
+H+ HL VL+VLRKE+L+ANLKKCTFCT+ VFLGFV S G++VDEEK+ AI++WPSP
Sbjct: 584 EHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSP 643
Query: 1846 TSVSNV*SFHGLASFYRRFVKDFNSIAAPITKVIKKNTGFKWGEEQEKAFQLIKQKLTHA 1667
+V V SFHGLA FYRRF KDF++I AP+T+V+KK+ GFKW + QE+AFQ +K KLT+A
Sbjct: 644 KTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNA 703
Query: 1666 PLHALPNFAKAFEIDCDALGLGIGVVLIQEGRPLAYFSEKLSGAALNYPTYDKEMYALVR 1487
P+ L F K FEI+CDA G+GIG VL+Q+ + +A+FSEKL GA LNYPTYDKE+YALVR
Sbjct: 704 PVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVR 763
Query: 1486 SLETWQHYLWPKEFVIHIDHESLKHLRGQHKLNKGRARWVEFFETFPYVIQYKQGKENIV 1307
+L+ WQHYLWPK FVIH DHESLKHL+GQ KLNK ARWVEF ETF YVI+YK+GK+N+V
Sbjct: 764 ALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVV 823
Query: 1306 ADALSRRYILISTLDAKILGFEHIKELYPLDHDFNEEYESCEETTNGKYFRHEGFLFREN 1127
ADALS+RY L+STL+ K++GFE IKE+Y DHDF E Y++CE+ +G+YFR + FLF EN
Sbjct: 824 ADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVYKACEKFASGRYFRQDKFLFYEN 883
Query: 1126 KLCIPNCSVRDLLVRESHGGGLMGHFGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQ 947
+LC+PNCS+RDL VRE+HGGGLMGHFG+AKTL ++ EHF WPHMK DV+RICGRC TC+Q
Sbjct: 884 RLCVPNCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQ 943
Query: 946 AKSRVPPHGLYTPLPIPSTPWIDISMDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIP 776
AKS++ P+GLYTPLPIP PW DISMDF++GLPR+ G+DS+FVV F + F P
Sbjct: 944 AKSKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT--GKDSIFVVYSPFQIVYGFNP 998
Score = 170 bits (430), Expect(4) = 0.0
Identities = 86/192 (44%), Positives = 120/192 (62%)
Frame = -1
Query: 3038 KVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI 2859
++LCDV+PM+AGH+LLGRPWQ DR+V HDG TN++SF LV +TP +V++DQ+
Sbjct: 295 EILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQDQIH 354
Query: 2858 LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSNQPMIVL 2679
L+++ E+ ++ N F + E+K A S QPM++
Sbjct: 355 LKQKKEQVV--------------------------KQPNFFAKSGEVKSAYSSKQPMLLF 388
Query: 2678 LYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN* 2499
++KEA + LPS + S LQD+ D+FP++ P GLPPIRGIEHQIDFV GA++PN
Sbjct: 389 VFKEALTSLTNFAPVLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNR 448
Query: 2498 PAYRSNPE*TKE 2463
PAYR+NP TKE
Sbjct: 449 PAYRTNPVETKE 460
Score = 157 bits (398), Expect(4) = 0.0
Identities = 86/173 (49%), Positives = 110/173 (63%)
Frame = -2
Query: 3550 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXX 3371
K A ++GK++ STSR D++C+KCQG+GH A++C NKRVM+L
Sbjct: 135 KPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEPEEEIPD 194
Query: 3370 DFMPPLEDANDEEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIID 3191
P +EE AQG +LLVARR LSVQ K D + Q +N+FHTRCHV KVCS+IID
Sbjct: 195 S---PSSLKENEELPAQG-ELLVARRTLSVQTKTDEQEQRKNLFHTRCHVHGKVCSLIID 250
Query: 3190 GGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
GGSCTNVAS MV+KLG L+WLNDSG+++V QV+V IGK+
Sbjct: 251 GGSCTNVASETMVKKLG-----------LKWLNDSGKMRVKNQVVVPIVIGKY 292
Score = 52.0 bits (123), Expect(4) = 0.0
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSA 3613
+SRFL LNR+I + +E Q+YV++E+M+H AI E Q+KR+ S+ S T A
Sbjct: 56 LSRFLGDLNRDIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSYGSGTIA 109
Score = 172 bits (437), Expect = 8e-40
Identities = 82/138 (59%), Positives = 107/138 (77%)
Frame = -1
Query: 455 FLPFEIVYCFNPLTPLDLSPLPMSERVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQA 276
+ PF+IVY FNP++P DL PLP+SERV++DGKKKAE V+QIHE AR NIE +T+ YAKQA
Sbjct: 987 YSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQA 1046
Query: 275 NKGRHKIVFEAEDWVWLHMRKERFPTQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYN 96
NKGR + +FE D VW+H+RKERFP QR+SKL+PR DGPF++++ INDNAY+LDL E +
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDLQDEPD 1106
Query: 95 VSATFNVSDLSPFSVGDD 42
+ + +PF G D
Sbjct: 1107 LRS-------NPFQEGGD 1117
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 790 bits (2039), Expect(3) = 0.0
Identities = 383/582 (65%), Positives = 456/582 (78%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL+ KG+VRES SPC+V V+LVPKKD WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714 TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLD+L GS +FSKIDLKS YH+IR+ GDEWKT FKTKYGLYE LVMPFGL NAPST
Sbjct: 774 LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMNHV F F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834 FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894 VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+T+VIKK+ F WG+EQ+ AF L+K KL APL LP+F+K+FE++CDA G GIG VL+
Sbjct: 954 PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q+ +P+AYFSEKLSGA LNY T DKE+YAL
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KL++ A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 1222 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 1043
D DF E + C+ K+ + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 1042 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 863
KTL IL EHFYWP M++DVE++C C+ C+QAKSR PHGLYTPLP+ ++PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDF 1224
Query: 862 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 737
+LGLPR+K G+DS+FVVVDRFSKMA FIPC NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Score = 324 bits (831), Expect(3) = 0.0
Identities = 154/233 (66%), Positives = 190/233 (81%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
FV+E+V+LHG+PRTIVSDRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
+LRAI+K + +WE+ LP VEFAYN T HS+T PFE+VY FNPLTPLDL PLP ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
NLDGKKKA+ +K+IHE+ RL IE + ++ A + NKGR ++F+ D VW+HMRKERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
++R++KL PRG GP++VLE I DNAYKLDLPGE+ VSATFNVSDLS + D
Sbjct: 1447 SKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVSDLSHYDADLD 1499
Score = 167 bits (424), Expect(3) = 0.0
Identities = 96/222 (43%), Positives = 124/222 (55%), Gaps = 30/222 (13%)
Frame = -1
Query: 3038 KVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI 2859
++LCDVVPMQA H+LLGRPWQ+DR H G N+YS + N + TL PL+P QV EDQ
Sbjct: 495 EILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKR 554
Query: 2858 LQK--------------------ESEKKKMIXXXXXXXXXXXXXXXXRIS---------- 2769
L++ E EKKK +S
Sbjct: 555 LRETMGKQKGEVKSELEGKEKGQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERK 614
Query: 2768 Q*EENREKNKFL*ASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDI 2589
+ +E + ++ ++ A E A P+I+L YKE N QL SLP+SV S LQ+F+D+
Sbjct: 615 EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674
Query: 2588 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PAYRSNPE*TKE 2463
FP + P GLPP+RGIEHQIDFV G+ +PN PAYRSNPE TKE
Sbjct: 675 FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716
Score = 128 bits (322), Expect(2) = 5e-36
Identities = 67/180 (37%), Positives = 101/180 (56%)
Frame = -2
Query: 3571 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXX 3392
D K +V+K G + + S+ + I+C KC GRGH+ +C ++R ++LR
Sbjct: 318 DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372
Query: 3391 XXXXXXXDFMPPLEDANDEEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 3212
+ D+ G + V RR +++ E Q EN+FHTRC ++ K
Sbjct: 373 SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432
Query: 3211 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
S+IIDGGSC NV S+ +V+KLG+ K PY+LQWLND GEV+VNKQ ++SF +G++
Sbjct: 433 TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492
Score = 53.1 bits (126), Expect(2) = 5e-36
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQL-KRRGSTCPSQNPSTSAWKSNH 3598
++RFL GLN EIAN VE+Q YV L+++V +++K+E Q+ K++ + P+T + K
Sbjct: 246 IARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNTISKKP-- 303
Query: 3597 WKKDEKQLMMKPKTE 3553
W E + KP+ +
Sbjct: 304 WSTQEGKAPSKPQDD 318
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 788 bits (2036), Expect(3) = 0.0
Identities = 383/582 (65%), Positives = 455/582 (78%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V EL+ KG+VRES SPC+V V+LVPKKD WRMCVDCRAIN I VKYRHPIPR
Sbjct: 714 TKELQRQVEELLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPR 773
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLD+L GS +FSKIDLKS YH+IR+ GDEWKT FKTKYGLYE LVMPFGL NAPST
Sbjct: 774 LDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 833
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMNHV F F+V+YFDDILI+SQNLD+HL HLK V +VLR ++LFANLKKCTFC
Sbjct: 834 FMRLMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKVFEVLRNQRLFANLKKCTFC 893
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
++ VFLGFV S+ G++VD+EKI AI+EWP P SV+ V SFHGLASFYRRFV+DF++IAA
Sbjct: 894 VDRVVFLGFVVSSMGVEVDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAA 953
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+T+VIKK+ F WG+EQ+ AF L+K KL APL LP+F+K+FE++CDA G GIG VL+
Sbjct: 954 PLTEVIKKDKVFTWGKEQDDAFNLLKDKLCSAPLLQLPDFSKSFEVECDASGKGIGAVLM 1013
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
Q+ +P+AYFSEKLSGA LNY T DKE+YAL
Sbjct: 1014 QDSKPIAYFSEKLSGATLNYSTNDKELYAL-----------------------------S 1044
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KL++ A+WVEF ETFPYVI YKQGKEN+VADALSRRY+LISTL +K+LGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 1222 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 1043
D DF E + C+ K+ + FLF+ENKLC+PNCS+R+L VRE+H GGLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 1042 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 863
KTL IL EHFYWP M++DVE++C C+ C+QAKSR PHGLYTPLP+ + PWIDISMDF
Sbjct: 1165 PKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDF 1224
Query: 862 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 737
+LGLPR+K G+DS+FVVVDRFSKMA FIPC NDASHVADL
Sbjct: 1225 ILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Score = 324 bits (831), Expect(3) = 0.0
Identities = 154/233 (66%), Positives = 190/233 (81%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
FV+E+V+LHG+PRTIVSDRDAKFLS+FW+ LW KLGTKLLFST+CHPQTDGQ EVVNRTL
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
+LRAI+K + +WE+ LP VEFAYN T HS+T PFE+VY FNPLTPLDL PLP ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
NLDGKKKA+ +K+IHE+ RL IE + ++ A + NKGR ++F+ D VW+HMRKERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
++R++KL PRG GP++VLE I DNAYKLDLPGE+ VSATFNVSDLS + D
Sbjct: 1447 SKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVSDLSHYDADLD 1499
Score = 167 bits (424), Expect(3) = 0.0
Identities = 96/222 (43%), Positives = 124/222 (55%), Gaps = 30/222 (13%)
Frame = -1
Query: 3038 KVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI 2859
++LCDVVPMQA H+LLGRPWQ+DR H G N+YS + N + TL PL+P QV EDQ
Sbjct: 495 EILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKR 554
Query: 2858 LQK--------------------ESEKKKMIXXXXXXXXXXXXXXXXRIS---------- 2769
L++ E EKKK +S
Sbjct: 555 LRETMGKQKGEVKSELEGKEKGQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERK 614
Query: 2768 Q*EENREKNKFL*ASEIKRAMFSNQPMIVLLYKEAYFNANQLNASLPSSVVSQLQDFDDI 2589
+ +E + ++ ++ A E A P+I+L YKE N QL SLP+SV S LQ+F+D+
Sbjct: 615 EAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDV 674
Query: 2588 FPKEIPNGLPPIRGIEHQIDFVLGATIPN*PAYRSNPE*TKE 2463
FP + P GLPP+RGIEHQIDFV G+ +PN PAYRSNPE TKE
Sbjct: 675 FPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKE 716
Score = 128 bits (322), Expect(2) = 5e-36
Identities = 67/180 (37%), Positives = 101/180 (56%)
Frame = -2
Query: 3571 DEAKNRVKKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXX 3392
D K +V+K G + + S+ + I+C KC GRGH+ +C ++R ++LR
Sbjct: 318 DRGKGKVEK-----GGKTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYE 372
Query: 3391 XXXXXXXDFMPPLEDANDEEYAAQGGDLLVARRALSVQAKEDGEVQLENIFHTRCHVQNK 3212
+ D+ G + V RR +++ E Q EN+FHTRC ++ K
Sbjct: 373 SEKSEREEEEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGK 432
Query: 3211 VCSVIIDGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGKF 3032
S+IIDGGSC NV S+ +V+KLG+ K PY+LQWLND GEV+VNKQ ++SF +G++
Sbjct: 433 TYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRY 492
Score = 53.1 bits (126), Expect(2) = 5e-36
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQL-KRRGSTCPSQNPSTSAWKSNH 3598
++RFL GLN EIAN VE+Q YV L+++V +++K+E Q+ K++ + P+T + K
Sbjct: 246 IARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNTISKKP-- 303
Query: 3597 WKKDEKQLMMKPKTE 3553
W E + KP+ +
Sbjct: 304 WSTQEGKAPSKPQDD 318
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 719 bits (1856), Expect(4) = 0.0
Identities = 341/585 (58%), Positives = 445/585 (76%), Gaps = 3/585 (0%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T Q+++ EL+ KG+VRES SPC+V +LVPKKD WRMC D RAINNI +KYR PIPR
Sbjct: 617 TQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPR 676
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDD+LDEL G+ +FSKIDL+ YH++R+KEGDEWKT FKTK+GLYE LVMPFGL NAPST
Sbjct: 677 LDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMPFGLSNAPST 736
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLM VL ++ F+V+YFDDIL+YS + ++HL HL+++ + LR+ KL+ L+KC+F
Sbjct: 737 FMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLYGKLEKCSFM 796
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
N+ FLGF+ S +GI VD+EK+ AI+ WP P ++++V SFHGLASFYRRF+KDF+++ A
Sbjct: 797 QNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRFIKDFSTLMA 856
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
PIT+ +KK FKWG++ E +F +IK+KL +P+ LPNF K FE++CDA G+GIG VL+
Sbjct: 857 PITECMKKGE-FKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASGIGIGAVLV 915
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QE +P+AYFSEKLSGA LNY TYDKE YA+VR+L W HYL P+ FV+H DHE+LK++ G
Sbjct: 916 QEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDHEALKYING 975
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
QHKLN A+WVEF ++F + +Y +GK+NIVADALSRR+I++S ++ ++LGFE++KELY
Sbjct: 976 QHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELY 1035
Query: 1222 PLDHDFNEEYE---SCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGH 1052
D DF E+E S + KY GFLF NKLC+P R+LL+RE H GL GH
Sbjct: 1036 VEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGH 1095
Query: 1051 FGVAKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDIS 872
FG+ KT ILQE FYWP M DV+ + RC C+Q+KS G YTPLP+P+ PW DIS
Sbjct: 1096 FGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSKSYFQT-GPYTPLPVPNQPWEDIS 1154
Query: 871 MDFMLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADL 737
MDF++ LPR++RG+DS+ VVVDRFSKMAHFI C DA+ VA+L
Sbjct: 1155 MDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAEL 1199
Score = 242 bits (617), Expect(4) = 0.0
Identities = 120/244 (49%), Positives = 168/244 (68%), Gaps = 7/244 (2%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
+ +E+V+LHG+P++IVSDRD+KF+S+FW+TLW L T+LLFST+ HPQTDGQ EV N+TL
Sbjct: 1200 YFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTL 1259
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
+LR + +++K W+ L EFA+N + T PFE+VY NP+ P DL+P+ +
Sbjct: 1260 GRILRCTVARSLKDWDLKLAQAEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRN- 1318
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIV-----FEAEDWVWLHMR 216
++ D KK+ E + IHE+ + IE A +A+KG+ K V FE D VW+H+R
Sbjct: 1319 TIDYDAKKRVEQMLHIHEQVKKQIE-----KANEAHKGKSKGVKGTKSFEPGDLVWIHLR 1373
Query: 215 KERFPTQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPF--SVGDD 42
KERFP +R++KL+PR DGPF+VLE NAYK++LPGEY V TFNV DLSP+ + +D
Sbjct: 1374 KERFPEKRKNKLMPRADGPFEVLEKFGSNAYKINLPGEYGVHGTFNVGDLSPYYEEIEED 1433
Query: 41 *FED 30
ED
Sbjct: 1434 KLED 1437
Score = 131 bits (329), Expect(4) = 0.0
Identities = 72/192 (37%), Positives = 102/192 (53%)
Frame = -1
Query: 3038 KVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI 2859
+ LCDV+PM A HLLLGRPW+FDR H G N Y+F R + L PL P H
Sbjct: 462 EALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPS 521
Query: 2858 LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSNQPMIVL 2679
+ + S++ +I +E+ + + ++ + L
Sbjct: 522 MLEPSKEVLLINE-------------------------------AEMLQELKGDEDVYAL 550
Query: 2678 LYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN* 2499
+ K+ F N SLP V LQ ++D+FP E+P+GLPP+RGIEHQIDF+ GAT+PN
Sbjct: 551 IAKDVVFGQN---VSLPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNK 607
Query: 2498 PAYRSNPE*TKE 2463
AYRS+P+ T+E
Sbjct: 608 AAYRSDPKATQE 619
Score = 118 bits (295), Expect(4) = 0.0
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Frame = -2
Query: 3481 KCFKCQGRGHIASQCLNKRVMV-LRXXXXXXXXXXXXXDFMPPLEDANDEEYAAQGGDLL 3305
KC++CQG GH A +C KR + + + + D+ G L
Sbjct: 308 KCYQCQGYGHFAKECPTKRALSSFEVVHWGDDEILVCDEEVEGTDHEEDDVVMPDAGLSL 367
Query: 3304 VARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTTK 3125
V R + Q + Q + IF +RC ++ +VC++IIDGGSCTNVAS+ ++EKL L T
Sbjct: 368 VTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQD 427
Query: 3124 HPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 3035
HP PYKL+WLN EV+V+KQ LV+F IGK
Sbjct: 428 HPSPYKLRWLNKGAEVRVDKQCLVTFSIGK 457
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 706 bits (1822), Expect(4) = 0.0
Identities = 354/585 (60%), Positives = 417/585 (71%)
Frame = -2
Query: 2482 TPSRQRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPR 2303
T QR+V L+ KG+VRES SPC V V LV KKD WRMCVD R INNI VKYRHPIPR
Sbjct: 517 TKELQRQVEXLLTKGHVRESLSPCVVXVXLVXKKDGTWRMCVDXRXINNITVKYRHPIPR 576
Query: 2302 LDDMLDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPST 2123
LDDMLDELHGSCVF+KIDLKS YH+IRMKEGDEWKT FKTKYGLYE LVMPFGL NAPST
Sbjct: 577 LDDMLDELHGSCVFTKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNAPST 636
Query: 2122 FMRLMNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFC 1943
FMRLMNH L +FI F+V+YFDDIL+YS+NLD+++ HL C
Sbjct: 637 FMRLMNHALRSFISRFVVVYFDDILVYSKNLDEYINHLH--------------------C 676
Query: 1942 TNKHVFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAA 1763
FL + + ++ W SFYR FVKDF+++A
Sbjct: 677 VLALCFLVMLLVXKELR-----------WMRK-------------SFYRXFVKDFSTLAV 712
Query: 1762 PITKVIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLI 1583
P+T+++KK GFKWG ++AF IK+ L GI +L+
Sbjct: 713 PLTEIVKKFVGFKWGSXXDRAFIXIKEMLC-----------------------GIRAILM 749
Query: 1582 QEGRPLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRG 1403
QE RP+ YFSEKL+G LNYPTYDKE+YALVR+LETWQHYLWPKEFVIH DHESLKHL+G
Sbjct: 750 QEKRPITYFSEKLNGTTLNYPTYDKELYALVRALETWQHYLWPKEFVIHTDHESLKHLKG 809
Query: 1402 QHKLNKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELY 1223
Q KLN+ A+WVEF ETF YVI+YKQGKENIVADALSRRY L+STL+AK+LGFE++KELY
Sbjct: 810 QGKLNRRHAKWVEFIETFLYVIKYKQGKENIVADALSRRYALVSTLNAKLLGFEYVKELY 869
Query: 1222 PLDHDFNEEYESCEETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGV 1043
D DF Y +CE+TT EN+LC+PN S+R+LLVRE+HGGGLMGHFGV
Sbjct: 870 ANDDDFASVYGACEKTT------------FENRLCVPNSSMRELLVREAHGGGLMGHFGV 917
Query: 1042 AKTLAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDF 863
KTL +L EHF+WP MK DVER C RC+TCRQAKSRV PHGLYTPLP+PS PW+DISMDF
Sbjct: 918 RKTLDVLHEHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDF 977
Query: 862 MLGLPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
+LGLPRS+ GR S+FVVVDRFSKM +FI CH ++DA+H+A+L R
Sbjct: 978 VLGLPRSRNGRXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFR 1022
Score = 316 bits (810), Expect(4) = 0.0
Identities = 156/233 (66%), Positives = 175/233 (75%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F REIVRLHG+PR+IVSDRD KFLSYFWK LW KLGTKLLFSTTCHPQTDGQ EVVNRTL
Sbjct: 1020 FFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKLLFSTTCHPQTDGQTEVVNRTL 1079
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
ST +HS T F PFEIVY FNPLT LDL PL ++E
Sbjct: 1080 STF--------------------------VHSTTNFSPFEIVYGFNPLTSLDLLPLXVNE 1113
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+LDG+KK E VK++HE R +IE + EQY +ANKG +++FE DWVW+HMRKERFP
Sbjct: 1114 MXSLDGEKKVEMVKKLHESVRKHIEKKNEQYVSKANKGXXQVLFEPGDWVWVHMRKERFP 1173
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPFSVGDD 42
T+R SKL PRGDGPFQVLE INDNAYKLD+PGEYN+SATFNVSDLSPF VGDD
Sbjct: 1174 TRRXSKLHPRGDGPFQVLERINDNAYKLDIPGEYNISATFNVSDLSPFDVGDD 1226
Score = 77.4 bits (189), Expect(4) = 0.0
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = -1
Query: 2642 NASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*PAYRSNPE*TKE 2463
N ++ +++ Q+++D+FP ++P+GLPPIRGIE QIDFV ATIPN AYRSNPE TKE
Sbjct: 460 NKTITLVLLTPRQEYEDVFPNDVPSGLPPIRGIEXQIDFVSXATIPNRXAYRSNPEETKE 519
Score = 23.9 bits (50), Expect(4) = 0.0
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2
Query: 31 TNPFQEEGND 2
TNPF+E+GND
Sbjct: 1229 TNPFEEKGND 1238
Score = 114 bits (285), Expect(3) = 3e-41
Identities = 73/173 (42%), Positives = 94/173 (54%), Gaps = 1/173 (0%)
Frame = -2
Query: 3550 KKEATSHGNQGKSDSSTSRNHDIKCFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXX 3371
+++ + N+GK++S T RN DIKCF+C G GHIASQC NK M++R
Sbjct: 302 RRDEAPNVNKGKNESQT-RNRDIKCFRCLGVGHIASQCPNKMTMIVRVDEEMETESKEDD 360
Query: 3370 DFMPPLEDANDEEYAAQGGDLLVARRALSVQAKEDGEVQLENI-FHTRCHVQNKVCSVII 3194
D MP LEDA D+ E L+ + ++ + + I+
Sbjct: 361 DQMPSLEDACDDNV----------------------EYPLKRMTWNNKWRI-----FFIL 393
Query: 3193 DGGSCTNVASTIMVEKLGLQTTKHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 3035
D T+ ST +VEKL L T KHPRPYKLQWLND GEVKVNKQVLV F IG+
Sbjct: 394 DA---TSTISTTLVEKLNLPTLKHPRPYKLQWLNDCGEVKVNKQVLVYFSIGR 443
Score = 58.2 bits (139), Expect(3) = 3e-41
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -3
Query: 3774 MSRFLVGLNREIANAVELQHYVELEDMVHMAIKIENQLKRRGSTCPSQNPSTSA-WKSNH 3598
M+RFL GLN++IAN VELQHYVELEDM +T QNPS+SA W+ N
Sbjct: 240 MARFLNGLNQDIANVVELQHYVELEDM--------------ETTRSFQNPSSSASWRPNR 285
Query: 3597 WKKDEKQLMMKPKTE*KKKQ 3538
+KDE ++ K KTE K++
Sbjct: 286 -RKDE-GVVFKSKTEPPKRR 303
Score = 47.4 bits (111), Expect(3) = 3e-41
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = -1
Query: 2969 RRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHED 2868
R+V HDG N+YSFV + +TITLV LTP+Q +ED
Sbjct: 443 RKVNHDGFKNRYSFVKDNKTITLVLLTPRQEYED 476
>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
gi|462405925|gb|EMJ11389.1| hypothetical protein
PRUPE_ppa017790mg [Prunus persica]
Length = 1485
Score = 716 bits (1848), Expect(4) = 0.0
Identities = 350/582 (60%), Positives = 443/582 (76%), Gaps = 1/582 (0%)
Frame = -2
Query: 2470 QRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPRLDDM 2291
+ ++ EL+ KG++RES SPCAV V+LVPKKD+ WRMCVD RAIN I VKYR PIPRL+DM
Sbjct: 643 REQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDM 702
Query: 2290 LDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRL 2111
LD L GS VFSKIDL+S YH+IR++ GDEWKT FK+K GL+E LVMPFGL N PSTFMRL
Sbjct: 703 LDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRL 762
Query: 2110 MNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKH 1931
MN VL FI +F+V+YFDDILIYS ++HL+HL+ VLDVLR+ KLF NLKKCTFCTNK
Sbjct: 763 MNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLFVNLKKCTFCTNKL 822
Query: 1930 VFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAAPITK 1751
+FLGFV GIQVD+EKI AI +WP+P +VS V SFHGLA+FYRRFV+ F+SI APIT+
Sbjct: 823 LFLGFVVGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYRRFVRHFSSIVAPITE 882
Query: 1750 VIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLIQEGR 1571
+KK F WGEEQE++F IK+KL AP+ ALPNF K FE++CDA G+G+G VL Q+ R
Sbjct: 883 CLKKGR-FSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLSQDKR 941
Query: 1570 PLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKL 1391
P+A+FSEKLS A + TYD+E YA+VR+L+ W+HYL KEFV+ DH++LK++ Q +
Sbjct: 942 PVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNI 1001
Query: 1390 NKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELYPLDH 1211
+K ARWV F + F +VI++ GK N VADALSRR L+ TL +++GFE +KELY D
Sbjct: 1002 DKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDA 1061
Query: 1210 DFNEEYESC-EETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGVAKT 1034
DF E + C + YF +EG+LF+ N+LCIP S+R+ L+R+ HGGGL GH G KT
Sbjct: 1062 DFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKT 1121
Query: 1033 LAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDFMLG 854
+A ++E FYWP +KRDV I +C TC+ +K +V GLY PLP+P+ W D++MDF+LG
Sbjct: 1122 IAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLG 1181
Query: 853 LPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
LPR++RG DSVFVVVDRFSKMAHFI C DAS++A L R
Sbjct: 1182 LPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFR 1223
Score = 211 bits (536), Expect(4) = 0.0
Identities = 108/228 (47%), Positives = 143/228 (62%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F RE+VRLHG+P +I SDRD KFLS+FW TLW GT L S+T HPQTDGQ EV NRTL
Sbjct: 1221 FFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTL 1280
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
++R++ + K W+ LP VEFAYN +HSAT PF IVY P +DL LP +
Sbjct: 1281 GNMVRSVCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQ 1340
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+ ++ K AE V + ++ + +E +Y A+K R VF+ D V + +RKERFP
Sbjct: 1341 QTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADKHRRVKVFQEGDSVMIFLRKERFP 1400
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPF 57
SKL P+ GP++VL+ INDNAY ++LP +S FNV+DL F
Sbjct: 1401 VGTYSKLKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEF 1448
Score = 79.0 bits (193), Expect(4) = 0.0
Identities = 55/188 (29%), Positives = 77/188 (40%)
Frame = -1
Query: 3038 KVLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVI 2859
+VLCDV+ M A H+LLGRPWQFD G N F N R I + P +
Sbjct: 498 EVLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRKIAMTTTQPSKPSV---- 553
Query: 2858 LQKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSNQPMIVL 2679
E + FL + SN+ +
Sbjct: 554 --------------------------------EVKTRSSSFL-------TLISNEQELNE 574
Query: 2678 LYKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN* 2499
KEA + +P V L F ++F + +PN LPP+R I+H+ID V GA++ N
Sbjct: 575 AVKEA-----EGEGDIPQDVQQILSQFQELFSENLPNELPPMRDIQHRIDLVPGASLQNL 629
Query: 2498 PAYRSNPE 2475
P YR +P+
Sbjct: 630 PHYRMSPK 637
Score = 70.1 bits (170), Expect(4) = 0.0
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -2
Query: 3478 CFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFMPPLEDANDEEYAAQGGD---L 3308
C++CQ GH ++ C L+ + D E+A + G
Sbjct: 351 CYRCQKPGHRSNVCPE-----LKQANFIEEADEDEENDEVGENDYAGAEFAVEEGMEKIT 405
Query: 3307 LVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTT 3128
LV +R L + +E+G Q +IF + C ++NKVC VI+D GSC N S +VE L L T
Sbjct: 406 LVLQRVL-LAPREEG--QRHSIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTE 462
Query: 3127 KHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 3035
H PY L W+ V+V + V IGK
Sbjct: 463 PHVSPYSLGWVKKGPSVRVAETCRVPLSIGK 493
>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
gi|462402874|gb|EMJ08431.1| hypothetical protein
PRUPE_ppa026856mg [Prunus persica]
Length = 1493
Score = 704 bits (1817), Expect(4) = 0.0
Identities = 344/582 (59%), Positives = 440/582 (75%), Gaps = 1/582 (0%)
Frame = -2
Query: 2470 QRKVIELMEKGYVRESKSPCAVLVILVPKKDRLWRMCVDCRAINNIMVKYRHPIPRLDDM 2291
+ ++ EL+ KG++RES SPCAV V+LVPKKD+ WRMCVD RA+N I VKYR IPRL+D+
Sbjct: 651 REQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAVNKIKVKYRFSIPRLEDI 710
Query: 2290 LDELHGSCVFSKIDLKSEYHRIRMKEGDEWKTKFKTKYGLYE*LVMPFGLINAPSTFMRL 2111
LD L GS VFSKIDL+S YH+IR++ GDEWKT FK+K GL+E LVMPFGL NAPSTFMRL
Sbjct: 711 LDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRL 770
Query: 2110 MNHVLHAFIENFLVIYFDDILIYSQNLDDHLMHLKLVLDVLRKEKLFANLKKCTFCTNKH 1931
MN VL FI +F+V+YFDDILIYS ++HL+HL+ VLDVLR+ KL+ NLKKCTFCTNK
Sbjct: 771 MNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLYVNLKKCTFCTNKL 830
Query: 1930 VFLGFVTSTQGIQVDEEKIHAIQEWPSPTSVSNV*SFHGLASFYRRFVKDFNSIAAPITK 1751
+FLGFV GIQVD+EKI AI +WP+P +VS V SFHGLA+FY RFV+ F+SIAAPIT+
Sbjct: 831 LFLGFVVGENGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYMRFVRHFSSIAAPITE 890
Query: 1750 VIKKNTGFKWGEEQEKAFQLIKQKLTHAPLHALPNFAKAFEIDCDALGLGIGVVLIQEGR 1571
+KK F WGEEQE++F IK+KL AP+ ALPNF K FE++CDA G+G+G VL+Q+ R
Sbjct: 891 CLKKGR-FSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLLQDKR 949
Query: 1570 PLAYFSEKLSGAALNYPTYDKEMYALVRSLETWQHYLWPKEFVIHIDHESLKHLRGQHKL 1391
P+A+FSEKLS A + TYD+E YA+VR+L+ W+HYL KEFV+ DH++LK++ Q +
Sbjct: 950 PVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNI 1009
Query: 1390 NKGRARWVEFFETFPYVIQYKQGKENIVADALSRRYILISTLDAKILGFEHIKELYPLDH 1211
+K ARWV F + F +VI++ GK N VADALSRR L+ TL +++GFE +KELY D
Sbjct: 1010 DKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDD 1069
Query: 1210 DFNEEYESC-EETTNGKYFRHEGFLFRENKLCIPNCSVRDLLVRESHGGGLMGHFGVAKT 1034
DF E + C + YF EG+LF+ N+LCIP S+R+ L+R+ HGGGL GH G KT
Sbjct: 1070 DFREIWTKCTNQEPMTDYFLTEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKT 1129
Query: 1033 LAILQEHFYWPHMKRDVERICGRCVTCRQAKSRVPPHGLYTPLPIPSTPWIDISMDFMLG 854
+A ++E FYWP +KRDV I +C TC+ +K +V GLY PLP+P+ W D++MDF+LG
Sbjct: 1130 IAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLG 1189
Query: 853 LPRSKRGRDSVFVVVDRFSKMAHFIPCHNMNDASHVADLLGR 728
PR++R DSVFVV DRFSKMAHFI C DAS++A L R
Sbjct: 1190 FPRTQRRVDSVFVVADRFSKMAHFIACKKTADASNIAKLFFR 1231
Score = 209 bits (532), Expect(4) = 0.0
Identities = 106/228 (46%), Positives = 143/228 (62%)
Frame = -1
Query: 740 FVREIVRLHGMPRTIVSDRDAKFLSYFWKTLWCKLGTKLLFSTTCHPQTDGQMEVVNRTL 561
F RE+VRLHG+P +I SDRD KFLS+FW TLW GT L S+T HPQTDGQ EV NRTL
Sbjct: 1229 FFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTL 1288
Query: 560 STLLRAIIKKNIKTWEECLPHVEFAYNCTIHSATKFLPFEIVYCFNPLTPLDLSPLPMSE 381
++R++ + K W+ LP +EFAYN +HSAT PF IVY P +DL LP +
Sbjct: 1289 GNMVRSVCGEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQ 1348
Query: 380 RVNLDGKKKAEFVKQIHEKARLNIE*RTEQYAKQANKGRHKIVFEAEDWVWLHMRKERFP 201
+ ++ K AE V + ++ + +E +Y A++ R VF+ D V + +RKERFP
Sbjct: 1349 QTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMVFLRKERFP 1408
Query: 200 TQRRSKLLPRGDGPFQVLEHINDNAYKLDLPGEYNVSATFNVSDLSPF 57
SKL P+ GP++VL+ INDNAY ++LP +S FNV+DL F
Sbjct: 1409 AGTYSKLKPKKYGPYKVLKRINDNAYDIELPDSMGISNIFNVADLYEF 1456
Score = 79.7 bits (195), Expect(4) = 0.0
Identities = 55/187 (29%), Positives = 76/187 (40%)
Frame = -1
Query: 3035 VLCDVVPMQAGHLLLGRPWQFDRRVKHDGSTNKYSFVLNQRTITLVPLTPKQVHEDQVIL 2856
VLCDV+ M A H+LLGRPWQFD G N F N R I + P + E
Sbjct: 510 VLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRKIAMATTQPSRKQE----- 564
Query: 2855 QKESEKKKMIXXXXXXXXXXXXXXXXRISQ*EENREKNKFL*ASEIKRAMFSNQPMIVLL 2676
+ FL + SN+ +
Sbjct: 565 ----------------------------------LRSSSFL-------TLISNEQELNEA 583
Query: 2675 YKEAYFNANQLNASLPSSVVSQLQDFDDIFPKEIPNGLPPIRGIEHQIDFVLGATIPN*P 2496
KEA + +P V L F ++ + +PN LPP+R I+H+ID V GA++PN P
Sbjct: 584 VKEA-----EGEGDIPQDVQQILSQFQELLSENLPNELPPMRDIQHRIDLVHGASLPNLP 638
Query: 2495 AYRSNPE 2475
YR +P+
Sbjct: 639 HYRMSPK 645
Score = 73.6 bits (179), Expect(4) = 0.0
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Frame = -2
Query: 3478 CFKCQGRGHIASQCLNKRVMVLRXXXXXXXXXXXXXDFMPPLEDANDEEYAAQGGD---L 3308
C++CQ GH ++ C ++ + D E+A + G
Sbjct: 362 CYRCQKPGHRSNVCPERKQANFIEEADEDEEKDEVGE-----NDYAGAEFAVEEGIEKIT 416
Query: 3307 LVARRALSVQAKEDGEVQLENIFHTRCHVQNKVCSVIIDGGSCTNVASTIMVEKLGLQTT 3128
LV +R L + KE+G Q NIF + C ++NKVC VI+D GSC N S +VE L L T
Sbjct: 417 LVLQRVL-LAPKEEG--QRHNIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTE 473
Query: 3127 KHPRPYKLQWLNDSGEVKVNKQVLVSFCIGK 3035
H PY L W+ V+V + V IGK
Sbjct: 474 PHVSPYSLGWVKKGPSVRVAETCRVPLSIGK 504