BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00009623
         (1178 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27412.3| unnamed protein product [Vitis vinifera]              591   e-166
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   591   e-166
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...   577   e-162
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   569   e-160
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   568   e-159
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   568   e-159
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   568   e-159
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   568   e-159
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   567   e-159
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   567   e-159
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [...   565   e-158
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   565   e-158
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   563   e-158
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         562   e-157
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...   561   e-157
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...   560   e-157
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...   560   e-157
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...   560   e-157
emb|CBL87031.1| RNA polymerase [Nuphar advena]                        560   e-157
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   559   e-157

>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  591 bits (1523), Expect = e-166
 Identities = 287/391 (73%), Positives = 323/391 (82%)
 Frame = -1

Query: 1175 HGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            +G  R+VQA+  IGEAIE EVRI  F++K++  +          S+ V KE+EKL     
Sbjct: 74   NGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKLRKKVS 132

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QDD KPWGQDA  KVG RLIELL+ETAYIQPP DQL DGPPDI
Sbjct: 133  MLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDI 192

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H+LK V K+T K  RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+NWT YD
Sbjct: 193  RPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYD 252

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGA+LFLPS VMR HG+R QREAIKRAPRK LE  FEAL+TLGNTKWR+NKRV GVI +I
Sbjct: 253  KGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRI 312

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            WA+GGRLADLVDREDVPLP +PDTEDE EIR WKWKV+++KKENSERHS+RCD+ELKLAV
Sbjct: 313  WASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAV 372

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH
Sbjct: 373  ARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIH 432

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +AN+YAGGVDKLSY+GR+AFTENHL+DIFDS
Sbjct: 433  LANVYAGGVDKLSYEGRVAFTENHLEDIFDS 463


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  591 bits (1523), Expect = e-166
 Identities = 287/391 (73%), Positives = 323/391 (82%)
 Frame = -1

Query: 1175 HGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            +G  R+VQA+  IGEAIE EVRI  F++K++  +          S+ V KE+EKL     
Sbjct: 242  NGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG-SNPVTKEQEKLRKKVS 300

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QDD KPWGQDA  KVG RLIELL+ETAYIQPP DQL DGPPDI
Sbjct: 301  MLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDI 360

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H+LK V K+T K  RR+GVIECDPLVR+GLEKTARH+VIPYMPMLVPP+NWT YD
Sbjct: 361  RPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYD 420

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGA+LFLPS VMR HG+R QREAIKRAPRK LE  FEAL+TLGNTKWR+NKRV GVI +I
Sbjct: 421  KGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRI 480

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            WA+GGRLADLVDREDVPLP +PDTEDE EIR WKWKV+++KKENSERHS+RCD+ELKLAV
Sbjct: 481  WASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAV 540

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH
Sbjct: 541  ARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIH 600

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +AN+YAGGVDKLSY+GR+AFTENHL+DIFDS
Sbjct: 601  LANVYAGGVDKLSYEGRVAFTENHLEDIFDS 631


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  577 bits (1486), Expect = e-162
 Identities = 276/404 (68%), Positives = 325/404 (80%), Gaps = 14/404 (3%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES--------------DA 1035
            G VR+VQA+  IGEAIE EVRI+ FL+K++            +S              + 
Sbjct: 256  GSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEK 315

Query: 1034 VAKEKEKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQ 855
            + KE+E+L                      Q+DLKPWGQ+A  KVGCRLI+LLM+TAYIQ
Sbjct: 316  LTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQ 375

Query: 854  PPVDQLADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYM 675
            PPVDQ+ DGPPDIRPAF H+LK +T+DT KT+RR+GVIECDP+VR+G+EKTARH+V+PYM
Sbjct: 376  PPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYM 435

Query: 674  PMLVPPINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKW 495
            PMLVPPINWT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE VFEALDTLG+TKW
Sbjct: 436  PMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALDTLGSTKW 495

Query: 494  RVNKRVFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSER 315
            RVNKRV GVI +IWA+GGRLADLVDREDVPLP +PDTEDE EIR WKWK+K  KKENSER
Sbjct: 496  RVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAAKKENSER 555

Query: 314  HSKRCDVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGR 135
            HS+RCD+ELKLA + KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEF+EGR
Sbjct: 556  HSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGILEFSEGR 615

Query: 134  PLGKSGLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
             LGKSGL+WLKIH+ANLYAGGVDKLS+D R AFTENH+D+IFDS
Sbjct: 616  HLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDS 659


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  569 bits (1466), Expect = e-160
 Identities = 277/394 (70%), Positives = 317/394 (80%), Gaps = 2/394 (0%)
 Frame = -1

Query: 1178 DHGMVRLVQASLEIGEAIEQEVRIYNFLKKS-RSNTXXXXXXXXXESDAVAKEKEKLXXX 1002
            +HG  R+VQA+  IG+AIEQEVRI+NFL+K+ R              D V  E+EKL   
Sbjct: 295  EHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKK 354

Query: 1001 XXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVD-QLADGP 825
                                D+ KPWG +A+AKVG RLIELLM+TAYIQPPVD QLAD P
Sbjct: 355  VTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTP 414

Query: 824  PDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWT 645
            PDIRPAF H+ K V ++  K  RRFGVIECDPLV++GLE+TARH+VIPY+PMLVPP+ WT
Sbjct: 415  PDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWT 474

Query: 644  RYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVI 465
             YDKGAHLFLPS VMRTHG+R QREA+KRAPR QLE VFEAL+TLGNTKWR+NKR+F V+
Sbjct: 475  GYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVV 534

Query: 464  HKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELK 285
             +IWA GG LADLVDR DVPLP +PDTEDE ++R WKWKVK++KK NSERHS+RCD+ELK
Sbjct: 535  DRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELK 594

Query: 284  LAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWL 105
            LAVA KMKDEDGFFYPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL WL
Sbjct: 595  LAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWL 654

Query: 104  KIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            KIH+ANL+AGGVDKLS++GRI FTENHLDDIFDS
Sbjct: 655  KIHLANLFAGGVDKLSHEGRITFTENHLDDIFDS 688


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  568 bits (1463), Expect = e-159
 Identities = 271/395 (68%), Positives = 320/395 (81%), Gaps = 7/395 (1%)
 Frame = -1

Query: 1166 VRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDA-------VAKEKEKLX 1008
            +R+VQA+  +GEAIE E RI+ FL+K++            ESDA       ++KE+EKL 
Sbjct: 247  IRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEKLSKEQEKLR 306

Query: 1007 XXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADG 828
                                  DD +PWGQ+   KVG RLI+L++ETAYIQPP+DQ+ DG
Sbjct: 307  KKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDG 366

Query: 827  PPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINW 648
            PPDIRPAF H+LK +TKDT K++RR+GVIECDPLVR+GLEK+ARH+VIPYMPMLVPP+NW
Sbjct: 367  PPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNW 426

Query: 647  TRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGV 468
            T YD+GAHLFLPS VMR HGS+ QR+A+KRA R QLE VF+ALDTLGNTKWR+NKRV  V
Sbjct: 427  TGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVV 486

Query: 467  IHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVEL 288
            + +IWA+GG LA LVDRED PLP +P TEDE EIR W WKV+++KKENSERHS+RCD+EL
Sbjct: 487  VDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIEL 546

Query: 287  KLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQW 108
            KLAVA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLGKSGL+W
Sbjct: 547  KLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRW 606

Query: 107  LKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            LKIH+ANLYAGGVDKLSYDGRI+FTENHLDDIFDS
Sbjct: 607  LKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDS 641


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
            gi|48716846|dbj|BAD23544.1| putative phage-type RNA
            polymerase [Oryza sativa Japonica Group]
            gi|215694941|dbj|BAG90132.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 951

 Score =  568 bits (1463), Expect = e-159
 Identities = 266/391 (68%), Positives = 324/391 (82%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDA-VAKEKEKLXXXXX 996
            G VR++QA+ +IGEAIE EVRI+ FL+K++  +           D+ +AKE+E+L     
Sbjct: 280  GSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVT 339

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QD+ KPWGQDA AKVG RLIEL++ETAYIQPP  Q ADGPPDI
Sbjct: 340  DLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDI 399

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H ++ V ++  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI+WT YD
Sbjct: 400  RPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYD 459

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEAL+TLG+TKWRVNKRV  ++ +I
Sbjct: 460  KGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRI 519

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W++GGRLADLVDR DV LP +PDTEDE +++ W+W ++  KKENSERHS+RCDVELKLAV
Sbjct: 520  WSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAV 579

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+WLKIH
Sbjct: 580  ARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIH 639

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLSYDGRIAFTENHL+DIFDS
Sbjct: 640  LANLYAGGVDKLSYDGRIAFTENHLEDIFDS 670


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score =  568 bits (1463), Expect = e-159
 Identities = 266/391 (68%), Positives = 324/391 (82%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDA-VAKEKEKLXXXXX 996
            G VR++QA+ +IGEAIE EVRI+ FL+K++  +           D+ +AKE+E+L     
Sbjct: 280  GSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVT 339

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QD+ KPWGQDA AKVG RLIEL++ETAYIQPP  Q ADGPPDI
Sbjct: 340  DLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDI 399

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H ++ V ++  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI+WT YD
Sbjct: 400  RPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYD 459

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEAL+TLG+TKWRVNKRV  ++ +I
Sbjct: 460  KGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRI 519

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W++GGRLADLVDR DV LP +PDTEDE +++ W+W ++  KKENSERHS+RCDVELKLAV
Sbjct: 520  WSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAV 579

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+WLKIH
Sbjct: 580  ARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIH 639

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLSYDGRIAFTENHL+DIFDS
Sbjct: 640  LANLYAGGVDKLSYDGRIAFTENHLEDIFDS 670


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  568 bits (1463), Expect = e-159
 Identities = 266/391 (68%), Positives = 324/391 (82%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDA-VAKEKEKLXXXXX 996
            G VR++QA+ +IGEAIE EVRI+ FL+K++  +           D+ +AKE+E+L     
Sbjct: 246  GSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVT 305

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QD+ KPWGQDA AKVG RLIEL++ETAYIQPP  Q ADGPPDI
Sbjct: 306  DLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDI 365

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H ++ V ++  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI+WT YD
Sbjct: 366  RPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYD 425

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGAHLFLPS VMRTHG+R QR+A++RAPR+Q++SVFEAL+TLG+TKWRVNKRV  ++ +I
Sbjct: 426  KGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRI 485

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W++GGRLADLVDR DV LP +PDTEDE +++ W+W ++  KKENSERHS+RCDVELKLAV
Sbjct: 486  WSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAV 545

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+WLKIH
Sbjct: 546  ARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIH 605

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLSYDGRIAFTENHL+DIFDS
Sbjct: 606  LANLYAGGVDKLSYDGRIAFTENHLEDIFDS 636


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score =  567 bits (1462), Expect = e-159
 Identities = 267/391 (68%), Positives = 320/391 (81%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKK-SRSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            G VR++QA+ +IGEAIE EVR++ FL+K  +  +             +AKE+E+L     
Sbjct: 102  GSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVT 161

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QD+ KPWGQD  AKVG RLIEL++ETAYIQPP  Q ADGPPDI
Sbjct: 162  DLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDI 221

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H ++ V K+  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI+WT YD
Sbjct: 222  RPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYD 281

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEALDTLG+TKWRVNKRV  ++ +I
Sbjct: 282  KGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRI 341

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W++GGRLADLVDR DV LP +PDTEDE +++ W+W +K  KKENSERHS+RCDVELKLAV
Sbjct: 342  WSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAV 401

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+WLKIH
Sbjct: 402  ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIH 461

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLSYDGRIAFTENHL+DIFDS
Sbjct: 462  LANLYAGGVDKLSYDGRIAFTENHLEDIFDS 492


>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X1 [Oryza brachyantha]
          Length = 703

 Score =  567 bits (1462), Expect = e-159
 Identities = 267/391 (68%), Positives = 320/391 (81%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKK-SRSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            G VR++QA+ +IGEAIE EVR++ FL+K  +  +             +AKE+E+L     
Sbjct: 75   GSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVT 134

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QD+ KPWGQD  AKVG RLIEL++ETAYIQPP  Q ADGPPDI
Sbjct: 135  DLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDI 194

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H ++ V K+  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI+WT YD
Sbjct: 195  RPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYD 254

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            KGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEALDTLG+TKWRVNKRV  ++ +I
Sbjct: 255  KGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRI 314

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            W++GGRLADLVDR DV LP +PDTEDE +++ W+W +K  KKENSERHS+RCDVELKLAV
Sbjct: 315  WSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAV 374

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+WLKIH
Sbjct: 375  ARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIH 434

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLYAGGVDKLSYDGRIAFTENHL+DIFDS
Sbjct: 435  LANLYAGGVDKLSYDGRIAFTENHLEDIFDS 465


>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 862

 Score =  565 bits (1456), Expect = e-158
 Identities = 272/395 (68%), Positives = 319/395 (80%), Gaps = 7/395 (1%)
 Frame = -1

Query: 1166 VRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDA-------VAKEKEKLX 1008
            +R+VQA+  +GEAIE E +I+ FL+K++            ES A       + KE+EKL 
Sbjct: 121  IRVVQAASVVGEAIENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLR 180

Query: 1007 XXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADG 828
                                  DD  PWGQ+A  KVG RLI+L++ETAYIQPP+DQ+ DG
Sbjct: 181  KKVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDG 240

Query: 827  PPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINW 648
            PPDIRPAF H+LK +TKDT K++RR+GVIECDPLVR+GLEK+ARH+VIPYMPMLVPP+NW
Sbjct: 241  PPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNW 300

Query: 647  TRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGV 468
            T YD+GA+ FLPS VMR HG++ QR AIKRA R QLE VF+ALDTLGNTKWRVNKR+ GV
Sbjct: 301  TGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGV 360

Query: 467  IHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVEL 288
            I +IWA+GG LA LVDREDVPLP +P TEDE EIR W+WKVK++KKENSERHS+RCDVEL
Sbjct: 361  IDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVEL 420

Query: 287  KLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQW 108
            KLAVA KMKDE+GF+YPHN+DFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLGKSGL+W
Sbjct: 421  KLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRW 480

Query: 107  LKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            LKIH+ANLYAGGVDKLSYDGRI+FTENHLDDIFDS
Sbjct: 481  LKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDS 515


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  565 bits (1456), Expect = e-158
 Identities = 269/392 (68%), Positives = 323/392 (82%), Gaps = 2/392 (0%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSR--SNTXXXXXXXXXESDAVAKEKEKLXXXX 999
            G VR++QA+ +IGEAIE EVRI  FL+K+R  SN              +AKE+++L    
Sbjct: 238  GSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKV 297

Query: 998  XXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPD 819
                              QD+ +PWGQD QAKVG RLIEL M+TA+IQPP  Q +DG PD
Sbjct: 298  TDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPD 357

Query: 818  IRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRY 639
            IRPAFRH ++ V K+  K++RR+GVI+CDPLVRQGL++TA+H+VIPYMPML+PPI WT Y
Sbjct: 358  IRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGY 417

Query: 638  DKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHK 459
            DKGAHLFLPS VMRTHG+R QREA+KRAPR+Q++SVFEAL+TLG+TKWRVNKRV  ++ +
Sbjct: 418  DKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDR 477

Query: 458  IWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLA 279
            IW++GGRLADLVDR DVPLP +PDTEDET I++WKW ++++KKENSERHS+RCDVELKLA
Sbjct: 478  IWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLA 537

Query: 278  VAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKI 99
            VA KMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL WLKI
Sbjct: 538  VARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKI 597

Query: 98   HMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            H+ANLYAGGVDKLSYDGR+AFTENHL++IFDS
Sbjct: 598  HLANLYAGGVDKLSYDGRVAFTENHLEEIFDS 629


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score =  563 bits (1452), Expect = e-158
 Identities = 273/399 (68%), Positives = 317/399 (79%), Gaps = 8/399 (2%)
 Frame = -1

Query: 1175 HGMVRLVQASLEIGEAIEQEVRIYNFL------KKSRSNTXXXXXXXXXESDA--VAKEK 1020
            +G VR+VQA+  +GEAIE E RI+ FL      KKS  N           SDA  +AKE+
Sbjct: 252  NGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQ 311

Query: 1019 EKLXXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQ 840
            EKL                       DD  PWGQ+AQ KVGCRLI+LL+ETAYIQPPV+Q
Sbjct: 312  EKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQ 371

Query: 839  LADGPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVP 660
            L DG PDIRPAF H+LK V KDT KT+RR+GVIECDP+VR GLEK+ARH+VIPYMPMLVP
Sbjct: 372  LGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVP 431

Query: 659  PINWTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKR 480
            P+NW  YD+GA+LFLPS VMRTHG++ QR A+KR P KQLE V+EAL+TLGNTKWR+NK+
Sbjct: 432  PLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKK 491

Query: 479  VFGVIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRC 300
            +  V+ +IWA GGRLA L+DRED PLP + +TEDE EI+ WKWKVK +KKENSERHS+RC
Sbjct: 492  ILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRC 551

Query: 299  DVELKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKS 120
            D+ELKLAVA KMKDEDGF+YPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEGRPLGKS
Sbjct: 552  DIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKS 611

Query: 119  GLQWLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            G +WLKIH+AN+YAGGVDKLSY+GR+AFTENHLD IFDS
Sbjct: 612  GFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDS 650


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  562 bits (1448), Expect = e-157
 Identities = 269/390 (68%), Positives = 317/390 (81%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXX 993
            G  R+VQA+  IGEAIE E RI+ FL+K++ +            D + KE+E+L      
Sbjct: 269  GSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMM-KERERLRKKVKI 327

Query: 992  XXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIR 813
                            QDD KPWGQD   KVGCRLI++LMETAYIQPP DQL DGPPDIR
Sbjct: 328  LMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIR 387

Query: 812  PAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDK 633
            PAF H+LK V  +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W  YDK
Sbjct: 388  PAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDK 445

Query: 632  GAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIW 453
            G +LFLPS +MRTHG++ QREA+KR P+KQLE VF+ALDTLGNTKWRVN++V G++++IW
Sbjct: 446  GGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIW 505

Query: 452  ATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVA 273
            A+GGRLADLVDREDVPLP  PDTEDE EIR WKWKVK +KKEN ERHS+RCD+ELKLAVA
Sbjct: 506  ASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVA 565

Query: 272  WKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHM 93
             KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL+WLKIH+
Sbjct: 566  RKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHL 625

Query: 92   ANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            AN+Y GGVDKLSY+GR+AF+ENHL+DIFDS
Sbjct: 626  ANVYGGGVDKLSYEGRVAFSENHLEDIFDS 655


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score =  561 bits (1446), Expect = e-157
 Identities = 269/390 (68%), Positives = 316/390 (81%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXX 993
            G  R+VQA+  IGEAIE E RI+ FL+K++ +            D + KE+E+L      
Sbjct: 269  GSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMM-KERERLRKKVKI 327

Query: 992  XXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIR 813
                            QDD KPWGQD   KVGCRLI++LMETAYIQPP DQL DGPPDIR
Sbjct: 328  LMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIR 387

Query: 812  PAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDK 633
            PAF H+LK V  +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W  YDK
Sbjct: 388  PAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDK 445

Query: 632  GAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIW 453
            G +LFLPS +MRTHG++ QREA+KR P+KQLE VF+ALDTLGNTKWRVN++V G++ +IW
Sbjct: 446  GGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIW 505

Query: 452  ATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVA 273
            A+GGRLADLVDREDVPLP  PDTEDE EIR WKWKVK +KKEN ERHS+RCD+ELKLAVA
Sbjct: 506  ASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVA 565

Query: 272  WKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHM 93
             KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL+WLKIH+
Sbjct: 566  RKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHL 625

Query: 92   ANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            AN+Y GGVDKLSY+GR+AF+ENHL+DIFDS
Sbjct: 626  ANVYGGGVDKLSYEGRVAFSENHLEDIFDS 655


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 932

 Score =  560 bits (1444), Expect = e-157
 Identities = 270/396 (68%), Positives = 312/396 (78%), Gaps = 6/396 (1%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES------DAVAKEKEKL 1011
            G +R+VQA+ +IGEAIE E +I +FL K++                    + + K++EKL
Sbjct: 254  GGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKL 313

Query: 1010 XXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 831
                                   D  K WGQ+A  KVGCRLI+LL+E AYIQPPVDQL D
Sbjct: 314  RKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGD 373

Query: 830  GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 651
             PPDIRPAF HSLK +TKD  K +RR+GVIECD LVR+GLEKTARH+VIPYMPMLVPP N
Sbjct: 374  CPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQN 433

Query: 650  WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFG 471
            WT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEALDTLGNTKWR+NKRV G
Sbjct: 434  WTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLG 493

Query: 470  VIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVE 291
            V+ ++WA GGR+A LVDREDVPLP +PDTEDE EI+ WKWKVK   K+N+ERHS RCDVE
Sbjct: 494  VVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVE 553

Query: 290  LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQ 111
            LKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+
Sbjct: 554  LKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLR 613

Query: 110  WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            WLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDS
Sbjct: 614  WLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDS 649


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score =  560 bits (1444), Expect = e-157
 Identities = 270/396 (68%), Positives = 312/396 (78%), Gaps = 6/396 (1%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXES------DAVAKEKEKL 1011
            G +R+VQA+ +IGEAIE E +I +FL K++                    + + K++EKL
Sbjct: 254  GGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKL 313

Query: 1010 XXXXXXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLAD 831
                                   D  K WGQ+A  KVGCRLI+LL+E AYIQPPVDQL D
Sbjct: 314  RKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGD 373

Query: 830  GPPDIRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPIN 651
             PPDIRPAF HSLK +TKD  K +RR+GVIECD LVR+GLEKTARH+VIPYMPMLVPP N
Sbjct: 374  CPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQN 433

Query: 650  WTRYDKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFG 471
            WT YD+GA+LFLPS VMRTHG++ QRE +KR PRKQLE +FEALDTLGNTKWR+NKRV G
Sbjct: 434  WTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLG 493

Query: 470  VIHKIWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVE 291
            V+ ++WA GGR+A LVDREDVPLP +PDTEDE EI+ WKWKVK   K+N+ERHS RCDVE
Sbjct: 494  VVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVE 553

Query: 290  LKLAVAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQ 111
            LKLAVA KM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGL+
Sbjct: 554  LKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLR 613

Query: 110  WLKIHMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            WLKIH+ANLYAGGVDKLSY+GRIAFTENHLDDIFDS
Sbjct: 614  WLKIHLANLYAGGVDKLSYEGRIAFTENHLDDIFDS 649


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score =  560 bits (1443), Expect = e-157
 Identities = 266/391 (68%), Positives = 317/391 (81%)
 Frame = -1

Query: 1175 HGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXX 996
            +G  R+VQA+  IGEAIE EVRI+ FL   +              D  AKE+++L     
Sbjct: 249  NGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGP-DPEAKEQDRLRKKVK 307

Query: 995  XXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDI 816
                             QDDLKPWGQDAQ KVGCRLI++L +TAYIQPPVDQ  DG PDI
Sbjct: 308  ILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDI 367

Query: 815  RPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYD 636
            RPAF H+LK V  +TLK +RR+GVIECDPLVR+G+EKTARH+VIPYMPMLVPP+NWT Y+
Sbjct: 368  RPAFVHTLKCV--ETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYE 425

Query: 635  KGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKI 456
            +GA+LFLPS +MRTHG++ QREA+KR P+++LE +F+AL+TLGNTKWRVNKR+  V+ +I
Sbjct: 426  RGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWRVNKRILSVVDRI 485

Query: 455  WATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAV 276
            WA GGRLADLVDRED+PLP +PDTEDE EI+ WKWKVK +KK NSERHS+RCD+ELKLAV
Sbjct: 486  WANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVNSERHSQRCDIELKLAV 545

Query: 275  AWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIH 96
            A K+K+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLQWLK+H
Sbjct: 546  ARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKVH 605

Query: 95   MANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            +ANLY GGVDK SYDGRI+FTENH++DIFDS
Sbjct: 606  LANLYGGGVDKFSYDGRISFTENHMEDIFDS 636


>emb|CBL87031.1| RNA polymerase [Nuphar advena]
          Length = 990

 Score =  560 bits (1443), Expect = e-157
 Identities = 267/392 (68%), Positives = 313/392 (79%)
 Frame = -1

Query: 1178 DHGMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXX 999
            DHG  R+VQA+  IG+AIE E RI++FL+K++            E + V KEKE L    
Sbjct: 260  DHGCARVVQAACRIGDAIENESRIHSFLEKTKKK-HARGNMAEEEPETVTKEKEFLRKKV 318

Query: 998  XXXXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPD 819
                              +DD  PWG +A AKVGC LIELL+ETAYIQPP+DQ  DGPPD
Sbjct: 319  TNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIETAYIQPPLDQTVDGPPD 378

Query: 818  IRPAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRY 639
            IRPAFRHSL+ V+K+    +RR+GVIECDPLVR+GL+KTARH VIPYMPMLVPP+ WT Y
Sbjct: 379  IRPAFRHSLRNVSKEQSSNSRRYGVIECDPLVRKGLDKTARHTVIPYMPMLVPPLCWTGY 438

Query: 638  DKGAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHK 459
            DKGAHLFLPS +MRTHGSR QREA+KR P +QL+S+FEALDTLG+TKWR+NKR+  V+ +
Sbjct: 439  DKGAHLFLPSYIMRTHGSRQQREAVKRTPTQQLQSIFEALDTLGSTKWRINKRLLAVVER 498

Query: 458  IWATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLA 279
            IWA+GG LA LVD ED PLP +PDTEDE  +R WKW ++  KKENSE+HS+RCDVELKL+
Sbjct: 499  IWASGGNLAGLVDCEDAPLPEKPDTEDEAVLRKWKWSLRNTKKENSEKHSQRCDVELKLS 558

Query: 278  VAWKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKI 99
            VA KMK+E+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKI
Sbjct: 559  VARKMKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKI 618

Query: 98   HMANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            H+ANLYAGGVDKLSYDGR+AF ENHLDDIFDS
Sbjct: 619  HLANLYAGGVDKLSYDGRLAFVENHLDDIFDS 650


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  559 bits (1440), Expect = e-157
 Identities = 266/390 (68%), Positives = 317/390 (81%)
 Frame = -1

Query: 1172 GMVRLVQASLEIGEAIEQEVRIYNFLKKSRSNTXXXXXXXXXESDAVAKEKEKLXXXXXX 993
            G  R+VQA+  IGEAIE E RI+ FL+K++ +            D + KE+E+L      
Sbjct: 269  GSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGD-IMKERERLRKKVKI 327

Query: 992  XXXXXXXXXXXXXXXXQDDLKPWGQDAQAKVGCRLIELLMETAYIQPPVDQLADGPPDIR 813
                            QDD KPWGQD   KVGCRLI++LMETAYIQPP DQL D PPDIR
Sbjct: 328  LMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIR 387

Query: 812  PAFRHSLKVVTKDTLKTNRRFGVIECDPLVRQGLEKTARHVVIPYMPMLVPPINWTRYDK 633
            PAF H+LK V  +T+K +RR+GVI+CDPLVR+GL+KTARH+VIPYMPMLVPP +W  YDK
Sbjct: 388  PAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDK 445

Query: 632  GAHLFLPSRVMRTHGSRHQREAIKRAPRKQLESVFEALDTLGNTKWRVNKRVFGVIHKIW 453
            GA+LFLPS +MRTHG++ QREA+KR P+KQLE VF+ALDTLGNTKWR+N++V G++ +IW
Sbjct: 446  GAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIW 505

Query: 452  ATGGRLADLVDREDVPLPVQPDTEDETEIRSWKWKVKTLKKENSERHSKRCDVELKLAVA 273
            A+GGRLADLVDREDVPLP +PD EDE +IR WKWKVK +KKEN ERHS+RCD+ELKLAVA
Sbjct: 506  ASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVA 565

Query: 272  WKMKDEDGFFYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHM 93
             KMKDEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGL+WLKIH+
Sbjct: 566  RKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHL 625

Query: 92   ANLYAGGVDKLSYDGRIAFTENHLDDIFDS 3
            AN+Y GGVDKLSY+GR+AF+ENH++DIFDS
Sbjct: 626  ANVYGGGVDKLSYEGRVAFSENHVEDIFDS 655