BLASTX nr result

ID: Akebia27_contig00008206 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00008206
         (333 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006489260.1| PREDICTED: F-box/kelch-repeat protein At3g23...    61   2e-07
ref|XP_006419562.1| hypothetical protein CICLE_v10006734mg [Citr...    59   5e-07
ref|XP_006352955.1| PREDICTED: F-box protein At3g07870-like [Sol...    58   2e-06

>ref|XP_006489260.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Citrus
           sinensis]
          Length = 437

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
 Frame = -1

Query: 333 CKFWCSLISDPQFPMMHFHRT-NQANPNIILLRRSVRNXXXXXXXXXXXXXXXXXXRA-S 160
           CK W SLISDP F ++ + RT   + P I+L +RS+ +                  RA +
Sbjct: 28  CKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALT 87

Query: 159 RIDVPFI--ESPFEIFGSCNGLLCISPTHNRNTQIYIFNPTTRQHMKLP 19
           R+  PFI  +S     GSC+GL+C++  + R  +I+I+NP+T  + KLP
Sbjct: 88  RLHFPFIRPDSMVRFIGSCHGLICLALDNYR--EIFIWNPSTGAYTKLP 134


>ref|XP_006419562.1| hypothetical protein CICLE_v10006734mg [Citrus clementina]
           gi|557521435|gb|ESR32802.1| hypothetical protein
           CICLE_v10006734mg [Citrus clementina]
          Length = 437

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = -1

Query: 333 CKFWCSLISDPQFPMMHFHRT-NQANPNIILLRRSVRNXXXXXXXXXXXXXXXXXXRA-S 160
           CK W SLISDP F ++ + RT   + P I+L +RS+ +                  RA +
Sbjct: 28  CKQWLSLISDPGFALLQYKRTARNSPPKILLSKRSLYSKDSPLRSFDCSTTSLHDQRALT 87

Query: 159 RIDVPFI--ESPFEIFGSCNGLLCISPTHNRNTQIYIFNPTTRQHMKLP 19
           R+  PFI  +      GSC+GL+C++  + R  +I+I+NP+T  + KLP
Sbjct: 88  RLHFPFIRPDGMVRFIGSCHGLICLALDNYR--EIFIWNPSTGAYTKLP 134


>ref|XP_006352955.1| PREDICTED: F-box protein At3g07870-like [Solanum tuberosum]
          Length = 413

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = -1

Query: 333 CKFWCSLISDPQFPMMHFHRTNQANPNIILLRRSVRNXXXXXXXXXXXXXXXXXXRASRI 154
           CK W SLI+ P F  +H +  N+ + +  L+R                          + 
Sbjct: 29  CKSWYSLITSPNFISIHLNNNNK-DDDYSLVRHCSEEPVKEMYALFYDNENFDQYV--QF 85

Query: 153 DVPF--IESPFEIFGSCNGLLCISPTHNRNTQI-YIFNPTTRQHMKLPE 16
           DVPF   ES F I GSCNGLLC+S   +R   + Y++NP+ R+ +KLP+
Sbjct: 86  DVPFDAFESQFNIIGSCNGLLCLSDDLSRYWDVYYLWNPSIRKSVKLPK 134


Top