BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00007900
         (1237 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   650   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   633   e-179
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   632   e-179
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   632   e-179
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   631   e-178
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   625   e-176
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       624   e-176
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   620   e-175
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      620   e-175
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       620   e-175
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   619   e-175
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   619   e-174
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   618   e-174
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   614   e-173
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   614   e-173
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      614   e-173
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   613   e-173
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   613   e-173
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   613   e-173
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   612   e-173

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  650 bits (1678), Expect = 0.0
 Identities = 322/411 (78%), Positives = 350/411 (85%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VA DPTS KKLSLR SM KY SE T LDVL WSK+QPCFLNRQLI+LLSTLG+ D IFEK
Sbjct: 581  VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 640

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+EAV QLD ILTDPL+AQEALE+MSPGEN N+LKE+L CGYKPDAEPFLSMMLQTFRA
Sbjct: 641  KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 700

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF PNGRSMMGCLDETRTL YGQVFVQ+S AG+RQ H       +    
Sbjct: 701  SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS- 759

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
             ++  I+ G V+VAKNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 760  -RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSD 818

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD ELIP +Q  PMDYTPAQS+ LDHDV IE+V+EYFTNYIVNDSLGIIAN
Sbjct: 819  LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 878

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHT FAD+EP KA S  C++LA  FSIAVDFPKTGVPAEIP HL+VKE+PDFMEK DKPT
Sbjct: 879  AHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 938

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFR VKDIAP  SCI+ FTKEVAR SYD DMEVDGFED+ID+
Sbjct: 939  YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDD 989


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  633 bits (1633), Expect = e-179
 Identities = 315/411 (76%), Positives = 346/411 (84%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS +KLSLRKSM KY S+NT+LDVL WSK+QP FLNRQLITLLSTLGV+D +FEK
Sbjct: 566  VAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEK 625

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+ AVDQLD IL DP+ AQEALE+MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA
Sbjct: 626  KQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRA 685

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            +KLLELR KTRIF PNGRSMMGCLDETRTLEYG+VFVQ+S  G RQ   +    R     
Sbjct: 686  AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS- 744

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
               + I+ GK++VAKNPCLHPGDVRVL AVNVP L HMVDCVVFPQKGKRPHPNECSGSD
Sbjct: 745  HHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSD 804

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD +LIP +Q+ PMDYTPA + +LDHDV IEEV+EYFTNYIVNDSLGIIAN
Sbjct: 805  LDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIAN 864

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHT FADKE  KA  + C ELA LFSIAVDFPKTGVPAEIP +L VKE+PDFMEK DKPT
Sbjct: 865  AHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPT 924

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVKDIAP    I+SFT++VAR SYD DMEV GFEDY+ +
Sbjct: 925  YESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 975


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  632 bits (1631), Expect = e-179
 Identities = 315/410 (76%), Positives = 352/410 (85%), Gaps = 1/410 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS +KLSLRKSM KY SENT+LDVL+WSK++PCFLNRQLITLLSTLGV+D +FEK
Sbjct: 108  VAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEK 167

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+EAVDQLD IL DPLRAQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA
Sbjct: 168  KQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRA 227

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQ-FHANPFFIRNENE 539
            +KLLELR KTRIF PNGRSMMGCLDETRTLEYG+VFVQ+S  G RQ F  +  F  + + 
Sbjct: 228  AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSH 287

Query: 540  LDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGS 719
             D  + I+ GKV+VAKNPCLHPGDVR+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGS
Sbjct: 288  HD--NFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGS 345

Query: 720  DLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIA 899
            DLDGDIYFV WD +LIP RQ+ PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIA
Sbjct: 346  DLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 405

Query: 900  NAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKP 1079
            NAHT FADKE  KA    C ELA LFSIA++FPKTGVPAEIP HLHVKE+PDFMEK +KP
Sbjct: 406  NAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKP 465

Query: 1080 TYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYI 1229
            TYES  VIGKLFREVKD+AP    I+SFT++VA  SYD+DMEVDGFEDY+
Sbjct: 466  TYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYV 515


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  632 bits (1630), Expect = e-179
 Identities = 314/410 (76%), Positives = 352/410 (85%), Gaps = 1/410 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS +KLSLRKSM KY SENT+LDVL+WSK++PCFLNRQLITLLSTLGV+D +FEK
Sbjct: 564  VAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEK 623

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+EAVDQLD IL DPLRAQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMMLQTFRA
Sbjct: 624  KQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRA 683

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQ-FHANPFFIRNENE 539
            +KLLELR KTRIF PNGRSMMGCLDETRTLEYG+VFVQ+S  G RQ F  +  F  + + 
Sbjct: 684  AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSH 743

Query: 540  LDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGS 719
             D  + I+ GKV+VAKNPCLHPGDVR+L AV+VPAL HMVDCVVFPQKG RPHP+ECSGS
Sbjct: 744  HD--NFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGS 801

Query: 720  DLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIA 899
            DLDGDIYFV WD +LIP RQ+ PMDYTPA + +LDHDV IEEV+EYFTNYI ND LGIIA
Sbjct: 802  DLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861

Query: 900  NAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKP 1079
            NAHT FADKE  KA    C ELA LFSIA++FPKTGVPAEIP HLHVKE+PDFMEK +KP
Sbjct: 862  NAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKP 921

Query: 1080 TYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYI 1229
            TYES  VIGKLFREVKD+AP    ++SFT++VA  SYD+DMEVDGFEDY+
Sbjct: 922  TYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYV 971


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  631 bits (1627), Expect = e-178
 Identities = 313/411 (76%), Positives = 347/411 (84%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS KKLSLR+SM KY SENT LDVL  SK+QPCFLNRQLITLLSTLGV D  FE+
Sbjct: 577  VAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFER 636

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+EAVDQLD +LTDPLRAQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRA
Sbjct: 637  KQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRA 696

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF PNGRSMMGCLDETRTLE+GQVFV+ S +  R  + +          
Sbjct: 697  SKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGR- 755

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
              +  +I G V+VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 756  -GQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSD 814

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WDPELIP +Q+ PMDYTP   + LDHDVTIEEV+EYFTNYIVNDSLG+IAN
Sbjct: 815  LDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIAN 874

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTA ADKE LKA S  C+ELA  FSIAVDFPKTGVPAEIPS+L  +E+PDFMEK DKP+
Sbjct: 875  AHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPS 934

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVKDIAP+ S I+SFT +VAR  YD DMEVDGFEDYID+
Sbjct: 935  YESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDD 985


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  625 bits (1612), Expect = e-176
 Identities = 310/411 (75%), Positives = 346/411 (84%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S  KLSLRKSM K+ S+NT LDVL  SK+QPCFLNRQLITL+STLGV D IFEK
Sbjct: 575  VAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEK 634

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ EAV+QLD ILTDPL+AQEALE+MSPGEN N+LKEMLKCGY+PD EP+LSMMLQTFRA
Sbjct: 635  KQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRA 694

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR K+RIF PNGR+MMGCLDETRTLEYGQVFVQ+S   HR    +  F R   E 
Sbjct: 695  SKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGRE- 753

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
                L+I G V VAKNPCLHPGDVRVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 754  --HHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSD 811

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD ELIP RQ+ PMDYTPA    LD DVT E++QEYF NY+VNDSLGIIAN
Sbjct: 812  LDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIAN 871

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFADKE  KA S+ C+ELA LFS+AVDFPKTGVPA IPSHL+VKEFPDFMEK D+P+
Sbjct: 872  AHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPS 931

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES++VIGKLFR VKDIAP  S I+SFT++VAR  YD DMEV+GFEDY+++
Sbjct: 932  YESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVED 982


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  624 bits (1610), Expect = e-176
 Identities = 307/411 (74%), Positives = 347/411 (84%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S  KLSLRKSM KY S NT LDVL WSK+QPC+LNRQL+TL+STLGV+D +F++
Sbjct: 256  VAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKR 315

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ EAV QLD IL D L+AQEAL++MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRA
Sbjct: 316  KQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRA 375

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLL+LR +TRIF P GRSMMGCLDE+RTLEYGQVFVQ + AG RQF+       N++  
Sbjct: 376  SKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHF-NDSGS 434

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
               + I+ G V+VAKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSGSD
Sbjct: 435  ANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSD 494

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WDP+LIP RQV+PMDYTPA S+ LDHDVTIEEV+EYFTNY+VND LG+IAN
Sbjct: 495  LDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIAN 554

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AH  FAD+EP  A S+ CIELA LFSIAVDFPKTGVPAEIPS L  KE+PDFMEK DK T
Sbjct: 555  AHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTT 614

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            Y S +VIGKLFREVKD   QAS I +FT++VAR SYD+D+EVDGFEDYIDE
Sbjct: 615  YHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDE 665


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  620 bits (1600), Expect = e-175
 Identities = 309/413 (74%), Positives = 349/413 (84%), Gaps = 2/413 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            V VDP S  KLSLRKSMSKY S+N  LDVL WSK+QPC+LNRQLITLLSTLGV+D + E+
Sbjct: 563  VGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQ 622

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQKEAVDQLD IL D L+AQEALE+MSPGEN N+LK ML CGYKPDAEPFLSMMLQTFRA
Sbjct: 623  KQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRA 682

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFH--ANPFFIRNEN 536
            SKLL+LR ++RIF PNGR+MMGCLDE+RTLEYGQVFVQ + AGH +F    +PF   N +
Sbjct: 683  SKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPF---NNS 739

Query: 537  ELDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSG 716
                 + I+ G V+VAKNPCLHPGD+RVL+AVNV AL HMVDCVVFPQKGKRPHPNECSG
Sbjct: 740  RSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSG 799

Query: 717  SDLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGII 896
            SDLDGDIYFV WD ++IP RQV+PM+Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII
Sbjct: 800  SDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGII 859

Query: 897  ANAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDK 1076
            ANAH  FAD+EP  A S+ C +LA LFSIAVDFPKTGVPAEIPS L  KE+PDFM+K DK
Sbjct: 860  ANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDK 919

Query: 1077 PTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
             +Y S RVIGKLFR+VKD APQAS I +FT++VAR SYD+DMEVDGFEDYIDE
Sbjct: 920  TSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDE 972


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  620 bits (1599), Expect = e-175
 Identities = 308/411 (74%), Positives = 339/411 (82%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VA+DPTS  KLSLRKSM KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV DR FEK
Sbjct: 570  VAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEK 629

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VDQL+ +LTDPL AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRA
Sbjct: 630  KQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRA 689

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR K RIF   GRSMMGCLDETRTL YGQVFVQ S  G R               
Sbjct: 690  SKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS--GSRS-------------- 733

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
             +R  I+ GKVIVAKNPCLHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 734  -ERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSD 792

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGD+YFV WDPELIP +Q+ PMDY+PA +  LDH+VTIEE++EYFTNYIVNDSLGII+N
Sbjct: 793  LDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISN 852

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFAD+EP KA S  C+ELA LFSIAVDFPKTGVPAEIP  L VKE+PDFMEK DKP+
Sbjct: 853  AHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPS 912

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            Y+SH VIGKLFREVK++AP    IK  T+E  +  YD DMEV+GFEDYID+
Sbjct: 913  YQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDD 963


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  620 bits (1599), Expect = e-175
 Identities = 310/413 (75%), Positives = 347/413 (84%), Gaps = 2/413 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S  KLSLRKSM KY S N  LDVL WSK+QPC+LNRQL+TLLSTLGV D + E+
Sbjct: 565  VAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQ 624

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ EAVDQLD IL D L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRA
Sbjct: 625  KQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRA 684

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQF--HANPFFIRNEN 536
            SKLL+LR +TRIF PNGR+MMGCLDE+RTLEYGQVFVQ S AG RQF   ++PF   N++
Sbjct: 685  SKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF---NDS 741

Query: 537  ELDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSG 716
                   I+ G V+VAKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSG
Sbjct: 742  GSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 801

Query: 717  SDLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGII 896
            SDLDGDIYFV WDP+LIP RQV+ MDYTPA +  LDHDVTIEEV+EYFTNYI+NDSLGII
Sbjct: 802  SDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGII 861

Query: 897  ANAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDK 1076
            ANAH  FAD+EP  A S+ C +LA LFSIAVDFPKTGVPAEIPS L  KE+PDFMEK DK
Sbjct: 862  ANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDK 921

Query: 1077 PTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            PTY S +VIGKLF++VK+  PQAS I +FT++VAR SYDSDM VDGFEDYIDE
Sbjct: 922  PTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDE 974


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  619 bits (1597), Expect = e-175
 Identities = 305/411 (74%), Positives = 343/411 (83%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS  KLSLR SM KY S NT LDVL +SKFQPCFLNRQ+ITLLSTLGV+D +FE 
Sbjct: 647  VAVDPTSRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFET 706

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQK+AV QLD IL DP  A EALE+MSPGENVNVLKEML CGY PD+EPFLSMMLQTFR 
Sbjct: 707  KQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRG 766

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
             KL EL+ KTRIF PNGRSMMGCLDET  LEYGQVFVQ S  G+R+ H       NE+  
Sbjct: 767  LKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGS 826

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
            DQR  +++GKVIVAKNPCLHPGDVR+L A++VPAL HMV+CVVFPQKGKRPHPNECSGSD
Sbjct: 827  DQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSD 886

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFVSWDP LIP  Q  PM+Y PA +  LDH+VTIEE++EYFTNY++NDSLGIIAN
Sbjct: 887  LDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIAN 946

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHT FADKEP+KA+S  C++LA LFS+AVDFPKTGVPA+IP HL+VKE+PDFM+K DKPT
Sbjct: 947  AHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPT 1006

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            Y+S RVIGKLFREVKD+ P  S I SFTK VA  SYD DMEVDGFE Y+D+
Sbjct: 1007 YQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDD 1057


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  619 bits (1595), Expect = e-174
 Identities = 307/413 (74%), Positives = 346/413 (83%), Gaps = 2/413 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S  KLSLR SM KY S N  LDVL WSK+QPC+LNRQL+TLLSTLGV+D +FE+
Sbjct: 566  VAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQ 625

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ EAVDQLD IL D L+AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQTFRA
Sbjct: 626  KQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRA 685

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFH--ANPFFIRNEN 536
            SKLL+LR ++RIF PNGR+MMGCLDE+RTLEYGQVFVQ +  G RQF+  ++PF   N++
Sbjct: 686  SKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPF---NDS 742

Query: 537  ELDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSG 716
                   I+ G V+VAKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSG
Sbjct: 743  GSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 802

Query: 717  SDLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGII 896
            SDLDGDIYFV WDP+L+P RQ +PMDYTPA S  LDHDVTIEEV+EYFTNYIVNDSLGII
Sbjct: 803  SDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGII 862

Query: 897  ANAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDK 1076
            ANAH  FAD+EP  A S+ C +LA LFSIAVDFPKTGVPAEIPS L  KE+PDFMEK DK
Sbjct: 863  ANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDK 922

Query: 1077 PTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            PTY S +VIGKLF++VKD  PQAS I +FT +VAR SYD DM V+GFEDYIDE
Sbjct: 923  PTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDE 975


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  618 bits (1594), Expect = e-174
 Identities = 309/411 (75%), Positives = 341/411 (82%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS KKLSLR SMSKY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D  FE+
Sbjct: 570  VAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEE 629

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VDQL+ ILTDPL+AQEALE+MSPGEN N+LKEML CGY+PDAEPFLSMMLQTFRA
Sbjct: 630  KQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRA 689

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR K+RIF  NGRSMMGCLDETRTL+YGQVFVQVS  G R               
Sbjct: 690  SKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVS--GSRS-------------- 733

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
             ++  I+ GKV+VAKNPCLHPGDVRVL AVNVP L HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 734  -EQRFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSD 792

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WDPELIP +Q+ PMDY+PA +  L+H+VTIEEV+EYFTNYIVNDSLGIIAN
Sbjct: 793  LDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIAN 852

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHT FAD+EP KA S+ C  LA LFSIAVDFPKTGVPAEIP  L VKE+PDFMEK DKPT
Sbjct: 853  AHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPT 912

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            Y+S+ VIGKLFREVKD+AP    I+S T+E     YD DMEVDG+EDY+D+
Sbjct: 913  YQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDD 963


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  614 bits (1584), Expect = e-173
 Identities = 308/411 (74%), Positives = 336/411 (81%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S KKLSLRKSMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLG++D +FEK
Sbjct: 565  VAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEK 624

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRA
Sbjct: 625  KQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRA 684

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF   GRSMMGCLDETRTLEYGQV VQ S                +   
Sbjct: 685  SKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS----------------DPMR 728

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
              R  II G V+VAKNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 729  PGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSD 788

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD ELIP R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIAN
Sbjct: 789  LDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIAN 848

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFADKEPLKA S+ CIELA  FS+AVDFPKTGV AEIP HLHVKE+PDFMEK DKPT
Sbjct: 849  AHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPT 908

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVDGFE+Y+DE
Sbjct: 909  YESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDE 959


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  614 bits (1583), Expect = e-173
 Identities = 309/411 (75%), Positives = 336/411 (81%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S KKLSLRKSMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGVED +FEK
Sbjct: 575  VAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEK 634

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRA
Sbjct: 635  KQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRA 694

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF   GRSMMGCLDETRTLEYGQV VQ S                +   
Sbjct: 695  SKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS----------------DPMR 738

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
              R  II G V+VAKNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 739  PGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSD 798

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD ELIP R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIAN
Sbjct: 799  LDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIAN 858

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFADKEPLKA S+ CIELA  FS+AVDFPKTGV AEIP HL+VKE+PDFMEK DKPT
Sbjct: 859  AHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPT 918

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVDGFE+Y+DE
Sbjct: 919  YESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDE 969


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  614 bits (1583), Expect = e-173
 Identities = 306/411 (74%), Positives = 337/411 (81%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VA+DPTS  KLSLRKSM KY SENT LDVL WSK+QPCFLNRQLITLLSTLGV D  FEK
Sbjct: 570  VAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEK 629

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VDQL+ +LTDPL AQEALE+MSPGEN N+LKEML CGYKPDAEPFLSMML+TFRA
Sbjct: 630  KQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRA 689

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR K RIF   GRSMMGCLDETRTL YGQVFVQ S  G R               
Sbjct: 690  SKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS--GSRS-------------- 733

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
             +R  I+ GKVIVAKNPCLHPGDVRVL+AVNVP L HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 734  -ERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSD 792

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGD+YFV WDPELIP +Q+ PMDY+PA +  LDH+VTIEE++EYFTNYIVNDSLGII+N
Sbjct: 793  LDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISN 852

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFAD+EP KA S  C+ELA LFSIAVDFPKTGVPAEIP  L VKEFPDFMEK DKP+
Sbjct: 853  AHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPS 912

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            Y+S+ VIGKLFREVK++AP    IK  T+E  +  YD DMEV+GF DYID+
Sbjct: 913  YQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDD 963


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  613 bits (1582), Expect = e-173
 Identities = 308/411 (74%), Positives = 339/411 (82%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S KKLSLRKSMSK+ S NT LDVL WSK+QPC+LNRQ+ITLLSTLGV+D +FEK
Sbjct: 574  VAVDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEK 633

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VD+LD ILTDPL A EAL +M+PGEN N+LK++L CGYKPDAEPFLSMMLQ FRA
Sbjct: 634  KQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRA 693

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF P GRSMMGCLDETRTLEYGQV VQ S         NP        +
Sbjct: 694  SKLLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYS---------NP-------TM 737

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
              +  II G V+VAKNPCLHPGDVRVLQAVNVPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 738  PGKRYIITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSD 797

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYF+ WD ELIP R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIAN
Sbjct: 798  LDGDIYFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIAN 857

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFADKEPLKA S+ CIELA  FSIAVDFPKTG+ AEIP HL+VKE+PDFM+K DKPT
Sbjct: 858  AHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPT 917

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVK+ AP    I+SFT +VA  SYD DMEV+GFE+YIDE
Sbjct: 918  YESKNVIGKLFREVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDE 968


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  613 bits (1581), Expect = e-173
 Identities = 308/411 (74%), Positives = 336/411 (81%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S KKLSLRKSMSK+ SENT LDVL WSK+QPC++NRQLITLLSTLGV+D +F+K
Sbjct: 575  VAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKK 634

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+E VD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKPDAEPFLSMMLQ FRA
Sbjct: 635  KQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRA 694

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            SKLLELR KTRIF   GRSMMGCLDETRTLEYGQV VQ S                +   
Sbjct: 695  SKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS----------------DPMR 738

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
              R  II G V+VAKNPCLHPGDVRVL+AVNVPAL HMVDCVVFPQKG RPHPNECSGSD
Sbjct: 739  PGRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSD 798

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD ELIP R  +PMDYTP  + +LDHDVTIEEV+EYF NYIVNDSLGIIAN
Sbjct: 799  LDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIAN 858

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHTAFADKEPLKA S+ CIELA  FS+AVDFPKTGV AEIP HLHVKE+PDFMEK DKPT
Sbjct: 859  AHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPT 918

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVK+ AP    IKSFT +VA  SYD DMEVDGFE+Y+DE
Sbjct: 919  YESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDE 969


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  613 bits (1580), Expect = e-173
 Identities = 308/411 (74%), Positives = 339/411 (82%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDPTS +KLSLRKSM KY S+NT+LDVL WSK+QP FLNRQLITLLSTLGV+D +FEK
Sbjct: 108  VAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEK 167

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQ+ AVDQLD IL DP+ AQEALE+MSPGEN NVLKEML CGYKPDAEPFLSMMLQTFRA
Sbjct: 168  KQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRA 227

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHANPFFIRNENEL 542
            +KLLELR KTRIF PNGRSMMGCLDETRTLEYG+VFVQ+S  G RQ   +    R     
Sbjct: 228  AKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS- 286

Query: 543  DQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSGSD 722
               + I+ GK++VAKNPCLHPGDVRVL AVNVP L HMVDCVVFPQKGKRPHPNECSGSD
Sbjct: 287  HHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSD 346

Query: 723  LDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGIIAN 902
            LDGDIYFV WD +LIP +Q+ PMDYTPA +         +EV+EYFTNYIVNDSLGIIAN
Sbjct: 347  LDGDIYFVCWDRDLIPPQQINPMDYTPAPT---------KEVEEYFTNYIVNDSLGIIAN 397

Query: 903  AHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEKLDKPT 1082
            AHT FADKE  KA  + C ELA LFSIAVDFPKTGVPAEIP +L VKE+PDFMEK DKPT
Sbjct: 398  AHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPT 457

Query: 1083 YESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            YES  VIGKLFREVKDIAP    I+SFT++VAR SYD DMEV GFEDY+ +
Sbjct: 458  YESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 508


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  612 bits (1579), Expect = e-173
 Identities = 308/414 (74%), Positives = 348/414 (84%), Gaps = 3/414 (0%)
 Frame = +3

Query: 3    VAVDPTSVKKLSLRKSMSKYRSENTSLDVLTWSKFQPCFLNRQLITLLSTLGVEDRIFEK 182
            VAVDP S  KLSLRKSMSKY S+N  LDVL WSK+QPC+LNRQLITLLSTLGV+D + E+
Sbjct: 411  VAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQ 470

Query: 183  KQKEAVDQLDMILTDPLRAQEALEVMSPGENVNVLKEMLKCGYKPDAEPFLSMMLQTFRA 362
            KQKEAVDQLD IL D L+AQEALE+MSPGEN N+LK ML CGY PDAEPFLSMMLQTFRA
Sbjct: 471  KQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRA 530

Query: 363  SKLLELRNKTRIFEPNGRSMMGCLDETRTLEYGQVFVQVSCAGHRQFHAN--PFFIRNEN 536
            SKLL+LR K+RIF PNGR+MMGCLDE+RTLEYGQVFVQ + AGHR+F  +  PF   N +
Sbjct: 531  SKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPF---NNS 587

Query: 537  ELDQRSLIIMGKVIVAKNPCLHPGDVRVLQAVNVPALQHMVDCVVFPQKGKRPHPNECSG 716
                 + I+ G V+VAKNPCLHPGD+RVL+AV+VPAL HMVDCVVFPQKGKRPHPNECSG
Sbjct: 588  RSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 647

Query: 717  SDLDGDIYFVSWDPELIPRRQVKPMDYTPAQSVLLDHDVTIEEVQEYFTNYIVNDSLGII 896
            SDLDGDIYFV WD ++IP RQV+PM+Y PA S+ LDHDVTIEEV+EYFTNYIVNDSLGII
Sbjct: 648  SDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGII 707

Query: 897  ANAHTAFADKEPLKAESNACIELAMLFSIAVDFPKTGVPAEIPSHLHVKEFPDFMEK-LD 1073
            +NAH  FAD+EP  A S+ C +LA L SIAVDFPKTGVPAEIPS L  KE+PDFM+K  D
Sbjct: 708  SNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPD 767

Query: 1074 KPTYESHRVIGKLFREVKDIAPQASCIKSFTKEVARMSYDSDMEVDGFEDYIDE 1235
            K TY S RVIGKLFR+VKD APQAS    FT++VAR SYD+D+EVDGFEDYIDE
Sbjct: 768  KTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE 821