BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00006489
         (2838 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1258   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1242   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1237   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1221   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1220   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1209   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1202   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1197   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...  1190   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1189   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1188   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1179   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1175   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1172   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1164   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1160   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1159   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...  1159   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1156   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...  1156   0.0  

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1258 bits (3254), Expect = 0.0
 Identities = 633/892 (70%), Positives = 722/892 (80%), Gaps = 14/892 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE + +F LESGS++S +L LVPI+GPPQG  LP+ ILFKIN+LVQNGCL+GPT
Sbjct: 232  ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD SFFRLV P+  PI++IE ALEKLYHLKECCYEPV WL+EQY  Y   K V   PAIS
Sbjct: 292  LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSPAIS 350

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+ GLVYVRRVQITP KVYFCGPEV VSNRVLRNY E IDNF+RVSF+DE  EK+ ST +
Sbjct: 351  LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVI 410

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAA 723
            SPR   E ++ T +YRRILS L+NGIVIGDKKFDFLAFSSSQLRDNSAWMFAS  G TAA
Sbjct: 411  SPRMSKEGRR-TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAA 469

Query: 724  KIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSDG 903
            +IR WMGDF +IRNVAKY+ARLGQSFSSS ETL V++            +    YVFSDG
Sbjct: 470  EIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDG 529

Query: 904  IGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQN 1080
            IGKIS + A +VA  CG KSS PSAFQIRYGGYKGVVAVDP S  KLSLR+SMFKY S N
Sbjct: 530  IGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDN 589

Query: 1081 IKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQ 1260
              LDVLAWSK+Q  FLNRQLITLLSTLGV+D +FEKKQ+  VDQL++IL DP  A EAL+
Sbjct: 590  TNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALE 649

Query: 1261 IMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCL 1440
            +MSPGEN NVL+EML+CGYKPD EPFLSMMLQTF+A+KLLEL+ KTRIF+PNGR+MMGCL
Sbjct: 650  LMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCL 709

Query: 1441 DETSTLEYGQVFVQVTSLGHD---------RYNESYQRTSIKEGVVIVAKNPCLHPGDLR 1593
            DET TLEYG+VFVQ++  G           R + S+    I EG ++VAKNPCLHPGD+R
Sbjct: 710  DETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVR 769

Query: 1594 VLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDY 1773
            VL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDR+LIPP+QI PMDY
Sbjct: 770  VLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDY 829

Query: 1774 TPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLF 1953
            TPA   +LDHDV IEEV+EYFTNY+VNDSLGIIANAHT FADKE  KA    C +LA+LF
Sbjct: 830  TPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLF 889

Query: 1954 SIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIK 2133
            SIAVDFPKTGVPAEIP +L VKEYPDFMEK DKPTYES  VIGKLFRE+KDIAP   +I+
Sbjct: 890  SIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIR 949

Query: 2134 SFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM- 2310
            SFT DVA++ YD DMEV GFEDY+ +A+YYK  YD+KLGNLMDYY IKTE+EIL  SIM 
Sbjct: 950  SFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMR 1009

Query: 2311 VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYF 2490
            +SKSFDR+KD EAIGLAV+SLRKEARTWF + G+++ S  +D+YAKASAWYHVTYHP Y+
Sbjct: 1010 MSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYW 1069

Query: 2491 GSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTT---ESFEHQLIRGLRLG 2637
            G YNEGM RDH+LSFPWCVYDKL+  K+   +  +    S E +L +GLRLG
Sbjct: 1070 GCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG 1121


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1242 bits (3213), Expect = 0.0
 Identities = 625/896 (69%), Positives = 719/896 (80%), Gaps = 19/896 (2%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E  F LESG TFS++ DLVPIVGP  G+ LPYNILF++N LVQNGCLAG  
Sbjct: 240  ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD  F+RLV P  MP+  IE ALEKLYHLKECCYEP  W NEQY KY +  N P+ P +S
Sbjct: 300  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+ GLVYV +VQITP KV+FCGPEV VSNRVLR Y E IDNF+RVSFVDE  EK+ STD+
Sbjct: 360  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419

Query: 544  SPRTKNEDK-KHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTA 720
            SPRT + ++ + T IY RILSTL+NGIVIGDKKF+FLAFSSSQLR+NS WMFAS  G TA
Sbjct: 420  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479

Query: 721  AKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSD 900
            A IR WMG F +IRNVA+Y+ARLGQSF SSTETL+VS             R G +Y+FSD
Sbjct: 480  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539

Query: 901  GIGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            GIGKIS +FARKVA  CG K  +PSAFQIRY GYKGVVAVDP S  KLSLRRSMFKY S+
Sbjct: 540  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVLA SK+Q CFLNRQLITLLSTLGV D  FE+KQ+E VDQL+++LTDP +A EAL
Sbjct: 600  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+EMLLCGY+PD EPFLSMMLQTF+ASKLLEL+ KTRIFIPNGR+MMGC
Sbjct: 660  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNESYQRTS-----------IKEGVVIVAKNPCLHPG 1584
            LDET TLE+GQVFV+ +     R+   Y  +            + +G V+VAKNPCLHPG
Sbjct: 720  LDETRTLEHGQVFVKFSG---SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPG 776

Query: 1585 DLRVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEP 1764
            DLR+L+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI P
Sbjct: 777  DLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISP 836

Query: 1765 MDYTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLA 1944
            MDYTP  P  LDHDV IEEV+EYFTNY+VNDSLG+IANAHTA ADKE  KA S+ C++LA
Sbjct: 837  MDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELA 896

Query: 1945 RLFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTN 2124
            R FSIAVDFPKTGVPAEIPS+L  +EYPDFMEK DKP+YES  VIGKLFRE+KDIAP+T+
Sbjct: 897  RKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956

Query: 2125 SIKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRS 2304
            SI+SFT DVA++CYD DMEVDGFEDYID+A+YYK  YD+KLGNLM+YY IKTEAE+L  S
Sbjct: 957  SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016

Query: 2305 IM-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHP 2481
             M +SKSF +K+D EAIG+AVRSL+KEAR+WF EKG+   S+ +D+ AKASAWYHVTYH 
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHH 1076

Query: 2482 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTESF-----EHQLIRGLRL 2634
            +Y+G YNEGM RDH+LSFPWCVYDKL+ IK+ NS R   S      E Q  RGL L
Sbjct: 1077 NYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1237 bits (3200), Expect = 0.0
 Identities = 622/893 (69%), Positives = 726/893 (81%), Gaps = 16/893 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E RF LE+GS +S+SLDLVPIVGPP G+ LPY ILFKIN LVQNGC+AGP 
Sbjct: 242  ENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPL 301

Query: 184  LDASFFRLVHPQFMPIAY--IERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            LD++F+RLV P   P++   IE AL+KLYHLKECCYEP  WL +QY KY + ++ P  PA
Sbjct: 302  LDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 361

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            ISL++GLVYV RVQ+TPS+VYFCGPE+ VSNRVLR++   IDNF+R+SF+DE  +K+ ST
Sbjct: 362  ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 421

Query: 538  DLSPRTKNE-DKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGF 714
            DLSPR  +  D   T IY RILSTLRNGI+IGD+KF+FLAFSSSQLR++SAWMFAS  G 
Sbjct: 422  DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 481

Query: 715  TAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVF 894
            TAA+IREWMG+FREIRNVAKY+ARLGQSFSSS ETL+V                  KYVF
Sbjct: 482  TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 541

Query: 895  SDGIGKISEKFARKVAKVCGIKSSP-SAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1071
            SDGIGK+S +FARKVA  CG+K +P SAFQIRYGGYKGVVA DP S  KLSLR SM KY 
Sbjct: 542  SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE 601

Query: 1072 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1251
            S+  KLDVLAWSK+Q CFLNRQLI+LLSTLG+ D IFEKKQ+E V QL++ILTDP KA E
Sbjct: 602  SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 661

Query: 1252 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1431
            AL++MSPGEN N+L+E+L+CGYKPD EPFLSMMLQTF+ASKLLEL+ KTRIFIPNGR+MM
Sbjct: 662  ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 721

Query: 1432 GCLDETSTLEYGQVFVQVTSLGHDR-------YNESYQRTS-IKEGVVIVAKNPCLHPGD 1587
            GCLDET TL YGQVFVQ++  G+ +       ++ S  R   I +G+V+VAKNPCLHPGD
Sbjct: 722  GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 781

Query: 1588 LRVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPM 1767
            +RVL+AVNVPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIPP+Q  PM
Sbjct: 782  VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 841

Query: 1768 DYTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLAR 1947
            DYTPA    LDHDV+IE+V+EYFTNY+VNDSLGIIANAHT FAD+EP KA S+ C+ LA 
Sbjct: 842  DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAE 901

Query: 1948 LFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNS 2127
             FSIAVDFPKTGVPAEIP HL+VKEYPDFMEK DKPTYES  VIGKLFR +KDIAP T+ 
Sbjct: 902  KFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSC 961

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
            I+ FT +VA++ YD DMEVDGFED+ID+A Y+KG YD+KLGNLMDYY IKTEAEIL  SI
Sbjct: 962  IRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 1021

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRT-NDLYAKASAWYHVTYHP 2481
            M +SKSF +++D EAIG+AVR+LRKEAR WF+E   KSGS T +D YAKASAWYHVTYHP
Sbjct: 1022 MKMSKSFTKRRDAEAIGMAVRALRKEARAWFKE---KSGSDTEDDAYAKASAWYHVTYHP 1078

Query: 2482 SYFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNST--RTTESFEHQLIRGLRL 2634
             Y+G YN GM RDH+LSFPWCVYD+LV IKK+ ++      + E Q  +GLR+
Sbjct: 1079 DYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQGLRM 1131


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1221 bits (3160), Expect = 0.0
 Identities = 617/894 (69%), Positives = 710/894 (79%), Gaps = 16/894 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E RF LESGS+FS++LDLVPIVGPP G+ LP+  +FKIN L+QNGCL+GPT
Sbjct: 240  ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299

Query: 184  LDASFFRLVHPQ-FMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAI 360
            LD  F+RLV PQ    +  I  ALEKL++LKEC YEP  WLNEQY KY +    PKPPAI
Sbjct: 300  LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 359

Query: 361  SLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTD 540
            +L+ GLVYVRRVQ+TPSKVYFCGPE+ VSNRVLR Y + ID F+RVSFVDE  EK+ STD
Sbjct: 360  ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419

Query: 541  LSPRTKNEDK-KHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            LSPRT N ++ + T IYRRILS LRNGI IGD+KF+FLAFSSSQLRDNS WMFA+ DG +
Sbjct: 420  LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR+W+GDFR IRNVAKY+ARLGQSF SSTETLTV              R  +KYVFS
Sbjct: 480  ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539

Query: 898  DGIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1074
            DGIGKIS  FA++VAK CG+K   PSAFQIRY GYKGVVAVDP S  KLSLR+SM+KY S
Sbjct: 540  DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599

Query: 1075 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1254
            +  KLDVLA+SK Q C+LNRQLITLLSTLGV DR+FEKKQ+E V QLN+IL DP +A EA
Sbjct: 600  ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659

Query: 1255 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1434
            L +MS GE  N+L+E+L CGY+P+ EPFLSMMLQ F+ASKL EL+ KTRI IP+GRAMMG
Sbjct: 660  LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719

Query: 1435 CLDETSTLEYGQVFVQVTSLGHDRYNESY--------QRTSIKEGVVIVAKNPCLHPGDL 1590
            CLDE  TLEYG+VFVQ + + H  + E           +  I  G V+VAKNPCLHPGD+
Sbjct: 720  CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 779

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAVNVPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +Q EPMD
Sbjct: 780  RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 839

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y+PA    LDHDV+IEEVQEYFTNY+VNDSLGIIANAHTAFADKEP KA S +CI+LARL
Sbjct: 840  YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 2130
            FSIAVDFPKTGVPA IP  L+VKEYPDFMEKL+KPTYES  VIGKLFRE+KDIAP   S+
Sbjct: 900  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959

Query: 2131 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 2310
              FT +VA + YD DME DGFEDYID+A+YYK  YD+KLGNL+DYY IK+EAEI+G SIM
Sbjct: 960  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019

Query: 2311 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 2487
             +SKSF +++D E+I +AVR+LRKEARTWF EKG+   S  +D+YAKASAWY+VTYH SY
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079

Query: 2488 FGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRLG 2637
            +G YNEGM RDHYLSFPWCVYDKLV IK++ +    +    S E    R L LG
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHLG 1133


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1220 bits (3157), Expect = 0.0
 Identities = 610/870 (70%), Positives = 709/870 (81%), Gaps = 11/870 (1%)
 Frame = +1

Query: 1    CENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGP 180
            CENF  YKE + +F LESG++FS +L LVPIVGPPQG  LP+ ILFKIN+LVQNGCL+GP
Sbjct: 229  CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288

Query: 181  TLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAI 360
            TLD +FFR V PQ + I++IE ALEKLY+L+ECCYEPV WL+EQY  Y S K V   PAI
Sbjct: 289  TLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPAI 347

Query: 361  SLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTD 540
            SL+ GLVYVRRVQITP KVYFCGPEV VSNRVLRNY E IDNF+RVSF+DE  EK+ ST 
Sbjct: 348  SLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTV 407

Query: 541  LSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTA 720
            +SPR  NE ++ T +YRRILS L+NGIVIGDKKFDFLA SSSQLRDNSAWMFAS  G TA
Sbjct: 408  ISPRMSNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTA 466

Query: 721  AKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSD 900
            A IR  MGDF +IRNVAKY+ARLGQSFSSS ETL V++            R+G  YVFSD
Sbjct: 467  ADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSD 526

Query: 901  GIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            GIGKIS + A +VA  CG K+S PSAFQIRYGGYKGVVAVDP S  KLSLR+SMFKY S+
Sbjct: 527  GIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESE 586

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N  LDVL+WSK++ CFLNRQLITLLSTLGV+D +FEKKQ+E VDQL++IL DP +A EAL
Sbjct: 587  NTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEAL 646

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+EML+CGYKPD EPFLSMMLQTF+A+KLLEL+ KTRIF+PNGR+MMGC
Sbjct: 647  ELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGC 706

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRY---------NESYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDET TLEYG+VFVQ++  G  +          + S+    I EG V+VAKNPCLHPGD+
Sbjct: 707  LDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDV 766

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            R+L AV+VPALHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +LIPPRQI PMD
Sbjct: 767  RILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMD 826

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            YTPA   +LDHDV IEEV+EYFTNY+ ND LGIIANAHT FADKE  KA    C +LA+L
Sbjct: 827  YTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKL 886

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 2130
            FSIA++FPKTGVPAEIP HLHVKEYPDFMEK +KPTYES  VIGKLFRE+KD+AP    +
Sbjct: 887  FSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDV 946

Query: 2131 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 2310
            +SFT DVA + YD DMEVDGFEDY+ +A+YYK +YDFKLG+LMD   I+TE+EIL  SIM
Sbjct: 947  RSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIM 1006

Query: 2311 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 2487
             +SKSFD++KD EAI LAVRSLRKEARTWF + G+ + +  +D+YA ASAWYHVTYHP Y
Sbjct: 1007 KMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYY 1066

Query: 2488 FGSYNEGMKRDHYLSFPWCVYDKLVSIKKN 2577
            +G YNEGM  DH+LSFPWCVYDKL+ IK++
Sbjct: 1067 WGCYNEGMYHDHFLSFPWCVYDKLIQIKRD 1096


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1209 bits (3128), Expect = 0.0
 Identities = 611/882 (69%), Positives = 714/882 (80%), Gaps = 5/882 (0%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E +F LESGS++S++L+LVPIVGP  G++LPY ILFKIN LVQNGC+ GP 
Sbjct: 239  ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LDA+F+RLV+P  +   YI+ ALEKLY+LKECC+EP  WL EQY  Y + K  P  P IS
Sbjct: 299  LDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVIS 358

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L++GLV VRRVQITPS+VYFCGPE+ VSNRVLR++ + IDNF+R++FVDE  EK+ STDL
Sbjct: 359  LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 418

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAA 723
              R +      TEIY RILSTL+NGIVIGDK+F+FLAFSSSQLR+NSAWMFAS +G TAA
Sbjct: 419  LTRNRI-----TEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAA 473

Query: 724  KIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSDG 903
             IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+V++            R+GI YVFSDG
Sbjct: 474  DIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDG 533

Query: 904  IGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQN 1080
            IGKIS KFA+KVA  C +   +PSAFQIR GG+KGVVAVDP S  KLSLR SM KY S+N
Sbjct: 534  IGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESEN 593

Query: 1081 IKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQ 1260
             KLDVLAWSK+Q CFLNRQLITLLSTLGV D  FE+KQ+EVVDQLN+ILTDP KA EAL+
Sbjct: 594  TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALE 653

Query: 1261 IMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCL 1440
            +MSPGEN N+L+EMLLCGY+PD EPFLSMMLQTF+ASKLLEL+ K+RIF+ NGR+MMGCL
Sbjct: 654  LMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCL 713

Query: 1441 DETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNVPA 1620
            DET TL+YGQVFVQV+       + S QR  I +G V+VAKNPCLHPGD+RVL AVNVP 
Sbjct: 714  DETRTLDYGQVFVQVSG------SRSEQRF-IVQGKVVVAKNPCLHPGDVRVLTAVNVPD 766

Query: 1621 LHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYTPALPALLD 1800
            LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP +QI PMDY+PA    L+
Sbjct: 767  LHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLE 826

Query: 1801 HDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFPKT 1980
            H+V IEEV+EYFTNY+VNDSLGIIANAHT FAD+EP KA S  C  LA+LFSIAVDFPKT
Sbjct: 827  HEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKT 886

Query: 1981 GVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVAKK 2160
            GVPAEIP  L VKEYPDFMEK DKPTY+S+ VIGKLFRE+KD+AP    I+S T +  ++
Sbjct: 887  GVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLER 946

Query: 2161 CYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDRKK 2337
             YD DMEVDG+EDY+D+A+Y+K  YD+KLGNLM+YY IKTEAEIL   IM +S+SF +++
Sbjct: 947  FYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTKQR 1006

Query: 2338 DGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGMKR 2517
            D EAIG+AVRSLRKEAR+WF EKG    S  +DLYAKASAWYHVTYHPSY+G YNEGM R
Sbjct: 1007 DAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGLYNEGMNR 1066

Query: 2518 DHYLSFPWCVYDKLVSIKKNNSTRTT---ESFEHQLIRGLRL 2634
            +H+LSFPWCVYDKL+ IKK  ++R      S E    RGLRL
Sbjct: 1067 NHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1202 bits (3109), Expect = 0.0
 Identities = 598/883 (67%), Positives = 708/883 (80%), Gaps = 6/883 (0%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E R  LESGS++S +L LVPIV P + ++LP+ ILFK+N LVQNGC+ GP 
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD +F+RLV P  M   YI+ ALEKLY+L+ECCYEP  WL E+Y  +   +     P IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+EGLVYVRRVQITPS+VYFCGPE+ VSNRVLR +   IDNF+R+SFVDE  EK+ ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAA 723
              R +      T IY+RILSTLRNGIVIG+K+F+FLAFSSSQLR+NSAWMFAS  G TAA
Sbjct: 419  QARGRR-----TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAA 473

Query: 724  KIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSDG 903
             IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+VS+            ++GIKYVFSDG
Sbjct: 474  DIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDG 533

Query: 904  IGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQN 1080
            IGKIS +FA+KVA  C +K  +PSAFQIR GG+KGVVA+DP S  KLSLR+SM KY S+N
Sbjct: 534  IGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESEN 593

Query: 1081 IKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQ 1260
             KLDVLAWSK+Q CFLNRQLITLLSTLGV DR FEKKQ+EVVDQLN++LTDP +A EAL+
Sbjct: 594  TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALE 653

Query: 1261 IMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCL 1440
            +MSPGEN N+L+EMLLCGYKPD EPFLSMML+TF+ASKLLEL+ K RIF+  GR+MMGCL
Sbjct: 654  LMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCL 713

Query: 1441 DETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNVPA 1620
            DET TL YGQVFVQ +           +R  I +G VIVAKNPCLHPGD+RVLRAVNVP 
Sbjct: 714  DETRTLNYGQVFVQFSG-------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPD 766

Query: 1621 LHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYTPALPALLD 1800
            LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI+PMDY+PA    LD
Sbjct: 767  LHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLD 826

Query: 1801 HDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFPKT 1980
            H+V IEE++EYFTNY+VNDSLGII+NAHTAFAD+EP KA S+ C++LA+LFSIAVDFPKT
Sbjct: 827  HEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKT 886

Query: 1981 GVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVAKK 2160
            GVPAEIP  L VKEYPDFMEK DKP+Y+SH VIGKLFRE+K++AP   SIK  T +  ++
Sbjct: 887  GVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQR 946

Query: 2161 CYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDRKK 2337
             YD DMEV+GFEDYID+A+++K +YD+KLGNLMDYY +KTEAEILG  IM +S+SF +K+
Sbjct: 947  FYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKR 1006

Query: 2338 DGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGMKR 2517
            D EAI +AVRSLRKEAR+WF EKG++     +D YAKASAWY+VTYHPSY+G YNEGM R
Sbjct: 1007 DAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNR 1066

Query: 2518 DHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRL 2634
            DH+LSFPWCVYDKL+ IKK  +         S EH+  RGL L
Sbjct: 1067 DHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1197 bits (3098), Expect = 0.0
 Identities = 611/886 (68%), Positives = 701/886 (79%), Gaps = 10/886 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYK+ + +F LE+GSTFS++ DLVPIVG P G++LPY+ILFKIN LVQ GCL+GPT
Sbjct: 235  ENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPT 294

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD +F+RLV P+ +    IE AL+KL +LKE CYEP  WLNE+Y KY   K  PKP  IS
Sbjct: 295  LDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALIS 354

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+ GLVYVRRVQITPSKVYF GPEV VSNR+LR YS  IDNF+RVSFVDE  EK+ STDL
Sbjct: 355  LDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDL 414

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAA 723
            SPRT     + T IY R+LS LR+GIV+G KKF+FLAFSSSQLR+NS WMFA  D  +A 
Sbjct: 415  SPRTST---RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSAD 471

Query: 724  KIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSDG 903
             IR  MGDFR+IRNVAKY+ARLGQSF SSTETL+V R              GIKYVFSDG
Sbjct: 472  TIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDG 531

Query: 904  IGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQN 1080
            IGKIS  FA +VAK CG K+ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S+N
Sbjct: 532  IGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESEN 591

Query: 1081 IKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQ 1260
             KLDVLA SK+Q CFLNRQLITLLSTL V+D +F KKQ+  V QLN+ILTDP KA EAL 
Sbjct: 592  TKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALD 651

Query: 1261 IMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCL 1440
            +MS GE+ NVL+E+L+CGYKP+ EPFLSMMLQTF+ASKLLEL+ KTRIFIP+GRAMMGCL
Sbjct: 652  LMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCL 711

Query: 1441 DETSTLEYGQVFVQVTSLGHDRY------NESYQRTSIKEGVVIVAKNPCLHPGDLRVLR 1602
            DET TLEYGQVFVQ +     +       + S     I EG V+VAKNPCLHPGD+RVLR
Sbjct: 712  DETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLR 771

Query: 1603 AVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYTPA 1782
            AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIPP+QI+PMDYTPA
Sbjct: 772  AVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPA 831

Query: 1783 LPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIA 1962
             P  +D DV IEEV+EYF NY+VNDSLGIIANAHT FAD +  KA S  C+ LA+LFSIA
Sbjct: 832  PPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIA 891

Query: 1963 VDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFT 2142
            VDFPKTGVPAEIP  L+ KEYPDFMEK DK TY SH VIG+LFRE+KDIAP  +SI SFT
Sbjct: 892  VDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFT 951

Query: 2143 WDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSK 2319
              VA KCYD DMEVDGFEDY+++A+Y+KG YD+KLGN++DYY IKTEAEIL  SIM +SK
Sbjct: 952  RQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSK 1011

Query: 2320 SFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSY 2499
            SF +++D +AI +AV+SLRKEAR WF EK T   S  +D+YAKASAWYHVTYHP+YFG Y
Sbjct: 1012 SFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGLY 1071

Query: 2500 NEGMKRDHYLSFPWCVYDKLVSIKKN--NSTRTTESFEHQLIRGLR 2631
            NEGM R H++SFPWCV+DKL  IKK   N  R   S E++L  GLR
Sbjct: 1072 NEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLENRLRYGLR 1117


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score = 1190 bits (3078), Expect = 0.0
 Identities = 593/875 (67%), Positives = 697/875 (79%), Gaps = 10/875 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            +NF YYKE E+ F LE+G  FS + DLVPIV PP  ++LPY +LFK+ SLVQ GCL GP 
Sbjct: 230  DNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPK 289

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD SFF LV+P    I YIE ALEKLY+LKECCY P  WL EQY +YR+ K  PK PAI 
Sbjct: 290  LDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAIC 349

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L++GLVYV RVQ+TP++VYF GPEV VSNRVLR+Y + IDNF+RVSFVDE  +KM STDL
Sbjct: 350  LDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDL 409

Query: 544  SPRTK-NEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTA 720
            SPR    ++ K T++Y R++S LR+G+ IGD+KFDFLAFSSSQLRDNS WMFA  DG  A
Sbjct: 410  SPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGLNA 469

Query: 721  AKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSD 900
              IREWMGDF  IRNVAKY+ARLGQSF SSTETL+VS+            +NG +Y FSD
Sbjct: 470  DGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV---KNGTEYTFSD 526

Query: 901  GIGKISEKFARKVAKVCGIKSS-PSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            GIGKISE FAR+VA  CG++SS PSAFQIRYGGYKGVVAVDP S  KLSLR SM KY S 
Sbjct: 527  GIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPSMLKYQSD 586

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVLAWSK+Q CFLNRQ+ITLLSTLGV+D +FEK+Q+E V QL+ +L DP +A EAL
Sbjct: 587  NTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMRAQEAL 646

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
             +MSPGEN ++L+EML CGY+PD EPFLSMMLQTF+ASKLL+L+ K R+FIP  R MMGC
Sbjct: 647  DLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKARVFIPKARQMMGC 706

Query: 1438 LDETSTLEYGQVFVQVT-SLGHDRYNESYQRTSIKE------GVVIVAKNPCLHPGDLRV 1596
            LDET  L+YGQVFV+ + ++    +++SY  ++  E      G V+VAKNPCLHPGD+RV
Sbjct: 707  LDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDPVRGKVVVAKNPCLHPGDVRV 766

Query: 1597 LRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYT 1776
            L AV+VP L HMVDCVVFP+ G RPHPNECSGSDLDGDIYFV WD +LIP +Q+EPMDY 
Sbjct: 767  LTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQVEPMDYN 826

Query: 1777 PALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFS 1956
            PA    LDHDV IEEV++YFTNY+VNDSLGIIANAHT FADKEP  A S+ C++LARLFS
Sbjct: 827  PAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPLMALSEPCLELARLFS 886

Query: 1957 IAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKS 2136
            IAVDF KTG+PAEIP HL VKEYPDFMEK DK  Y S RVIGKLFRE+KDIAPQT+S +S
Sbjct: 887  IAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQTSSFRS 946

Query: 2137 FTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-V 2313
            FT +VA++ YD DMEVDGFED+IDEA+ +K  YD+KLGNLM+YY +KTEAE+L   IM +
Sbjct: 947  FTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYGVKTEAEVLSGGIMKM 1006

Query: 2314 SKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFG 2493
            SK+FDR+KD EAIG AVRSLR EAR+WF     K G+  +D+YAKASAWY+VTYHP YFG
Sbjct: 1007 SKTFDRRKDAEAIGAAVRSLRNEARSWF-----KKGTEADDVYAKASAWYYVTYHPDYFG 1061

Query: 2494 SYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTE 2598
             YNEGMKRDHYLSFPWCVYDKLV IKK+NS R ++
Sbjct: 1062 CYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQ 1096


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1189 bits (3076), Expect = 0.0
 Identities = 603/894 (67%), Positives = 700/894 (78%), Gaps = 17/894 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQS---LDLVPIVGPPQGLELPYNILFKINSLVQNGCLA 174
            E+F YYKE  ++  L++G TFS S   L LVPIV  P+G+ELPY ILFKI+SL+Q+GC  
Sbjct: 228  ESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFP 287

Query: 175  GPTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPP 354
            G  L+ +FF+LV P+   IA IE ALEKLY+LKECCY+PV WL EQY +Y   + +PK P
Sbjct: 288  GLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSP 347

Query: 355  AISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRS 534
            +I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ S
Sbjct: 348  SITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHS 407

Query: 535  TDLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGF 714
            TDL PR    +   T+IY RILSTLRNG VIGDKKF+FLAFSSSQLRDNS WMFAS  G 
Sbjct: 408  TDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGL 467

Query: 715  TAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVF 894
            TA  IR WMG F++IRNVAKY+ARLGQSF SS ETL+V R             +G  Y+F
Sbjct: 468  TANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIF 527

Query: 895  SDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTS 1074
            SDGIGKIS  FAR+VA  CG++ +PS FQIRYGGYKGVVAVDP S MKLSLR SM KY S
Sbjct: 528  SDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYES 587

Query: 1075 QNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEA 1254
             NIKLDVL WSK+Q C+LNRQL+TLLSTLGV+D +FE+KQ E VDQL++IL D  KA EA
Sbjct: 588  NNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEA 647

Query: 1255 LQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMG 1434
            L++MSPGEN N+L+EML CGY PD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGR MMG
Sbjct: 648  LELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMG 707

Query: 1435 CLDETSTLEYGQVFVQVTSLGHDR-YNESYQRTS--------IKEGVVIVAKNPCLHPGD 1587
            CLDE+ TLEYGQVFVQ T  G  + Y ES+            I EG V+VAKNPCLHPGD
Sbjct: 708  CLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGD 767

Query: 1588 LRVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPM 1767
            +RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +L+PPRQ +PM
Sbjct: 768  IRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPM 827

Query: 1768 DYTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLAR 1947
            DYTPA    LDHDV IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA+
Sbjct: 828  DYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQ 887

Query: 1948 LFSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNS 2127
            LFSIAVDFPKTGVPAEIPS L  KEYPDFMEK DKPTY S +VIGKLF+++KD  PQ +S
Sbjct: 888  LFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASS 947

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
            I +FT DVA+K YD DM V+GFEDYIDEA+YYK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 948  IANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGI 1007

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD +AIG+AVRSLRKEARTWF+ +     S  +D+ AKASAWYHVTYH +
Sbjct: 1008 MKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR-----SDIDDMLAKASAWYHVTYHHT 1062

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRT----TESFEHQLIRGLRL 2634
            Y+G YNEG+KRDH++SFPWC+YD+L+ IKK  + +       S  +QL R L L
Sbjct: 1063 YWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVL 1116


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1188 bits (3074), Expect = 0.0
 Identities = 592/883 (67%), Positives = 703/883 (79%), Gaps = 6/883 (0%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YYKE E R  LESGS++S +L LVPIV P + ++LP+ ILFK+N LVQNGC+ GP 
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD +F+RLV P  M   YI+ ALEKLY+L+ECCYEP  WL E+Y  +   +     P IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+EGLVYVRRVQITPS+VYFCGPE+ VSNRVLR +   IDNF+R+SFVDE  EK+ ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFTAA 723
              R +      T IY+RILSTLRNGIVIG+K+F+FLAFSSSQLR+NSAWMFAS  G TAA
Sbjct: 419  QARGRR-----TGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAA 473

Query: 724  KIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFSDG 903
             IR WMG+F +IRNVAKY+ARLGQSFSSSTETL+VS+            ++GIKYVF DG
Sbjct: 474  DIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDG 533

Query: 904  IGKISEKFARKVAKVCGIKS-SPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQN 1080
            IGKIS +FA+KVA  C +K  +PSAFQIR GG+KGVVA+DP S  KLSLR+SM KY S+N
Sbjct: 534  IGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESEN 593

Query: 1081 IKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEALQ 1260
             KLDVLAWSK+Q CFLNRQLITLLSTLGV D  FEKKQ+EVVDQLN++LTDP +A EAL+
Sbjct: 594  TKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALE 653

Query: 1261 IMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGCL 1440
            +MSPGEN N+L+EMLLCGYKPD EPFLSMML+TF+ASKLLEL+ K RIF+  GR+MMGCL
Sbjct: 654  LMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCL 713

Query: 1441 DETSTLEYGQVFVQVTSLGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLRAVNVPA 1620
            DET TL YGQVFVQ +           +R  I +G VIVAKNPCLHPGD+RVLRAVNVP 
Sbjct: 714  DETRTLNYGQVFVQFSG-------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPD 766

Query: 1621 LHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYTPALPALLD 1800
            LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WD ELIP +QI+PMDY+PA    LD
Sbjct: 767  LHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLD 826

Query: 1801 HDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIAVDFPKT 1980
            H+V IEE++EYFTNY+VNDSLGII+NAHTAFAD+EPGKA S+ C++LA+LFSIAVDFPKT
Sbjct: 827  HEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKT 886

Query: 1981 GVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFTWDVAKK 2160
            GVPAEIP  L VKE+PDFMEK DKP+Y+S+ VIGKLFRE+K++AP   SIK  T +  K+
Sbjct: 887  GVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKR 946

Query: 2161 CYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSKSFDRKK 2337
             YD DMEV+GF DYID+A++YK +YD+KLGNLMDYY +KTEAEIL   IM +S+SF +K+
Sbjct: 947  FYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKR 1006

Query: 2338 DGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSYFGSYNEGMKR 2517
            D E+I +AVRSLRKEAR+WF EKG++     +D YAKASAWY+VTYH SY+G YNEGM R
Sbjct: 1007 DAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNR 1066

Query: 2518 DHYLSFPWCVYDKLVSIKKNNS----TRTTESFEHQLIRGLRL 2634
            DH+LSFPWCVYDKL+ IKK  +         S EH+  RG  L
Sbjct: 1067 DHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1179 bits (3051), Expect = 0.0
 Identities = 591/869 (68%), Positives = 687/869 (79%), Gaps = 12/869 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFS--QSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F YYKE  ++F L++G TFS  Q L LVPIV  P+G+ELPY ILFKI+SL+Q+GC  G
Sbjct: 228  ESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPG 287

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
              L+ +FF+LV P+   IA IE ALEKLY+LKECCY+PV WL EQY +Y   + +PK P 
Sbjct: 288  LALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPP 347

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE I+NF+RVSFVDE  EK+ ST
Sbjct: 348  ITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHST 407

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            DL PR    +   T+IY RILSTLRNG +IGDK+F+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 408  DLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLT 467

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR WMGDFR+IRNVAKY+ARLGQSF SS ETL+V R             +G  Y+FS
Sbjct: 468  ANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFS 527

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FA +V   CG++ +PS+FQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 528  DGIGKISADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESN 587

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            NIKLDVL WSK+Q C+LNRQL+TLLSTLGV D + E+KQ E VDQL++IL D  KA EAL
Sbjct: 588  NIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEAL 647

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+EML CGY PD EPFLSMMLQTF+ASKLL+L+ +TRIFIPNGR MMGC
Sbjct: 648  ELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGC 707

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ +  G  ++ E         S     I +G V+VAKNPCLHPGD+
Sbjct: 708  LDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDI 767

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD +LIPPRQ++ MD
Sbjct: 768  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMD 827

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            YTPA    LDHDV IEEV+EYFTNY++NDSLGIIANAH  FAD+EP  A S  C  LA+L
Sbjct: 828  YTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQL 887

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 2130
            FSIAVDFPKTGVPAEIPS L  KEYPDFMEK DKPTY S +VIGKLF+++K+  PQ +SI
Sbjct: 888  FSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSI 947

Query: 2131 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 2310
             +FT DVA+K YD DM VDGFEDYIDEA+YYK  YD KLGNLMDYY IKTEAEIL   IM
Sbjct: 948  ATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIM 1007

Query: 2311 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 2487
              SK+FDR+KD EAIG+AVR LRKEAR WF+ +     S  +D+ AKASAWYHVTYH +Y
Sbjct: 1008 KASKTFDRRKDAEAIGVAVRCLRKEARAWFKRR-----SDIDDMLAKASAWYHVTYHHTY 1062

Query: 2488 FGSYNEGMKRDHYLSFPWCVYDKLVSIKK 2574
            +G YNEG+KRDH++SFPWCVYD+L+ IKK
Sbjct: 1063 WGLYNEGLKRDHFISFPWCVYDQLIQIKK 1091


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score = 1175 bits (3039), Expect = 0.0
 Identities = 597/874 (68%), Positives = 700/874 (80%), Gaps = 12/874 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRF-FLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGP 180
            +NF YY+E E  F  ++  + FS   DL PIV     + LPY ILFKIN+LVQ GC+  P
Sbjct: 240  QNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWP 298

Query: 181  TLDASFFRLVHPQFMP-IAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
             LDASF+RLV       I ++E ALEKL+HLKEC Y+P  +L EQY KY   ++ P  P 
Sbjct: 299  LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS--RHPPNSPV 356

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            ISL++GLVYVRRVQITP KV+FCGPEV VSNRVLR++S+ IDNF+RVSFVDE  +KMRST
Sbjct: 357  ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 416

Query: 538  DLSPR--TKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDG 711
            DL PR  +K+ED K T+IYRRILS L+NGIVIGDK F FLAFSSSQLRDNS WMFASG  
Sbjct: 417  DLLPRMSSKSEDGK-TDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 475

Query: 712  FTAAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYV 891
              AA IR WMGDFR I+N AKY+ARLGQSF SSTE L+V+             +  IKYV
Sbjct: 476  IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 535

Query: 892  FSDGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYT 1071
            FSDGIGKIS KFA++VA  CG ++ PSAFQIRYGGYKGVVAVDP S +KLSLR+SM K+ 
Sbjct: 536  FSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 595

Query: 1072 SQNIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALE 1251
            S N KLDVL  SK+Q CFLNRQLITL+STLGV D IFEKKQ E V+QL++ILTDP KA E
Sbjct: 596  SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 655

Query: 1252 ALQIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMM 1431
            AL++MSPGEN N+L+EML CGY+PD EP+LSMMLQTF+ASKLLEL+ K+RIFIPNGRAMM
Sbjct: 656  ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 715

Query: 1432 GCLDETSTLEYGQVFVQVTSLGHDRYNESY-------QRTSIKEGVVIVAKNPCLHPGDL 1590
            GCLDET TLEYGQVFVQ++S  H   +ES+       +   + EG V VAKNPCLHPGD+
Sbjct: 716  GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 775

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVL+AVN+P L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP RQI PMD
Sbjct: 776  RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 835

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            YTPA P  LD DV  E++QEYF NYMVNDSLGIIANAHTAFADKE  KA S  C++LA+L
Sbjct: 836  YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 895

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 2130
            FS+AVDFPKTGVPA IPSHL+VKE+PDFMEK D+P+YES++VIGKLFR +KDIAP  + I
Sbjct: 896  FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 955

Query: 2131 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 2310
            +SFT DVA++CYD DMEV+GFEDY+++A+Y+K  YD+KLGNL+DYY IK+EAE+L  SIM
Sbjct: 956  RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1015

Query: 2311 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 2487
             +SKSF R++D EAI LAVRSLRKEARTWF  +   + S ++DL+AKASAWY+VTYH SY
Sbjct: 1016 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYYVTYHHSY 1074

Query: 2488 FGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNSTR 2589
            +G YNEGMKRDHYLSFPWCVYDKL+ IK+NN  R
Sbjct: 1075 WGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRR 1108


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1172 bits (3031), Expect = 0.0
 Identities = 600/886 (67%), Positives = 701/886 (79%), Gaps = 9/886 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTFSQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAGPT 183
            ENF YY+E E ++ L++G  FSQ+  LVPIV PP G+++ Y+ILFK+NSLVQ+ CLAGP 
Sbjct: 243  ENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPA 302

Query: 184  LDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPAIS 363
            LD  F+RLV P+ MP  +IE ALEK+Y+ KE CYEP  WL +QY  Y   KN P+ PAIS
Sbjct: 303  LDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAIS 362

Query: 364  LNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRSTDL 543
            L+ GLVYVRRVQITP KVYFCGPE+ VSNRVLR++ E IDNF+RVSFVDE  +K+ STDL
Sbjct: 363  LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFSTDL 422

Query: 544  SPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGD-GFTA 720
            S R++N   K TEIY RILS L+NGIV+GDKKF+FLAFSSSQLR+NS WMFA  + G TA
Sbjct: 423  SSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTA 479

Query: 721  AKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXR-NGIKYVFS 897
            A IR+WMG+F +IRNVAKY+ARLGQSF SSTETL+V R              +G +YVFS
Sbjct: 480  AYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFS 539

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS +FA+KVAK CG   +PSAFQIRYGGYKGVVAVDPKS  KLSLR+SM KY S 
Sbjct: 540  DGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSD 599

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVLA SKFQ C+LNRQLI+LLSTLG++D +FEKKQ+E V+QLN+ILTD  KA E L
Sbjct: 600  NTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVL 659

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
             +MS GE  NVL+EML+CGYKP+EEPFLSMMLQTF+ASKLLEL+ K+RIFIP GRAMMGC
Sbjct: 660  DLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGC 719

Query: 1438 LDETSTLEYGQVFVQVTS-----LGHDRYNESYQRTSIKEGVVIVAKNPCLHPGDLRVLR 1602
            LDET TLEYGQVFVQ ++     L  D ++    +  + +G V+VAKNPCLHPGD+RVL+
Sbjct: 720  LDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQ 779

Query: 1603 AVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMDYTPA 1782
            AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD ELIP R I+PMDYT  
Sbjct: 780  AVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAP 839

Query: 1783 LPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARLFSIA 1962
                LDHDV IEEV+EYF NY+VNDSLGIIANAHT FADKE  KA S  C+ LARLFS A
Sbjct: 840  ATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTA 899

Query: 1963 VDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSIKSFT 2142
            VDFPKTGVPA IP  LHVKEYPDFMEK DKPTY+SH VIGKLFRE+K+I+    SI SFT
Sbjct: 900  VDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFT 959

Query: 2143 WDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM-VSK 2319
              VA+  YD++MEVDGF DY+D+A+Y+K  YD+KLGNLMDYY IKTEAEILG +IM +SK
Sbjct: 960  KLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSK 1019

Query: 2320 SFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKS-GSRTNDLYAKASAWYHVTYHPSYFGS 2496
            SF++++D EAI +AVRSLRKEAR WF E  +    S ++D+YAKASAWYHVTYHPSY+G 
Sbjct: 1020 SFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGC 1079

Query: 2497 YNEGMKRDHYLSFPWCVYDKLVSIKKNNSTRTTESFEHQLIRGLRL 2634
            YNEGM RDHYLSF WCVY  LV IKK   +    S E+    GLRL
Sbjct: 1080 YNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRSSLEYS-FSGLRL 1124


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1164 bits (3010), Expect = 0.0
 Identities = 584/872 (66%), Positives = 682/872 (78%), Gaps = 12/872 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 228  ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPG 287

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+  FFRLV P+   +A IE ALEKLY++KECCY+PV WL EQY  Y   +  PK P+
Sbjct: 288  PALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPS 347

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 348  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            DL P+        T IY RILSTLR G VIGDKKF+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 408  DLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLT 467

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R             +G  YVFS
Sbjct: 468  ANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFS 525

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FA +VA  CG++ +PSAFQIRYGGYKGVV VDP S MKLSLR+SM KY S 
Sbjct: 526  DGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESD 585

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            NIKLDVL WSK+Q C+LNRQLITLLSTLGV+D + E+KQKE VDQL++IL D  KA EAL
Sbjct: 586  NIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEAL 645

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGYKPD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGR MMGC
Sbjct: 646  ELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGC 705

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  +++         S     I +G V+VAKNPCLHPGD+
Sbjct: 706  LDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDI 765

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVL+AVNV ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++PM+
Sbjct: 766  RVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPME 825

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDHDV IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA L
Sbjct: 826  YPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAEL 885

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEKLDKPTYESHRVIGKLFRELKDIAPQTNSI 2130
            FSIAVDFPKTGVPAEIPS L  KEYPDFM+K DK +Y S RVIGKLFR++KD APQ +SI
Sbjct: 886  FSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSI 945

Query: 2131 KSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSIM 2310
             +FT DVA++ YD DMEVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   IM
Sbjct: 946  ATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIM 1005

Query: 2311 -VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPSY 2487
              SK+FDR+KD EAI +AVR+LRKEAR WF+ +     +  +D+  KASAWYHVTYHP+Y
Sbjct: 1006 KASKTFDRRKDAEAISVAVRALRKEARAWFKRR-----NDIDDMLPKASAWYHVTYHPTY 1060

Query: 2488 FGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 2583
            +G YN+G+KR H++SFPWCVYD+L+ IKK+ +
Sbjct: 1061 WGCYNQGLKRAHFISFPWCVYDQLIQIKKDKA 1092


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score = 1160 bits (3001), Expect = 0.0
 Identities = 587/873 (67%), Positives = 685/873 (78%), Gaps = 13/873 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 228  ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 287

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+ +FFRLV PQ   +A IE+ALEKLY+LKECCY+PV WL EQY  Y   +  PK P+
Sbjct: 288  PALNVNFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 347

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 348  INLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            DL P+    +   T IY RILSTL+ G VIGDKKF+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 408  DLLPKASTGNGIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLT 467

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R             +G  YVFS
Sbjct: 468  AIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFS 525

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FAR+VA  CG++ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 526  DGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESD 585

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVL WSK+Q CFLNRQL+TLLSTLGV+D + E+KQKE VDQL++IL D  KA EAL
Sbjct: 586  NNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEAL 645

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGY PD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGRAMMGC
Sbjct: 646  ELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGC 705

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  ++E         S     I +G V+VAKNPCLHPGD+
Sbjct: 706  LDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDI 765

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++ M+
Sbjct: 766  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAME 825

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDHDV IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA L
Sbjct: 826  YPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAEL 885

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LDKPTYESHRVIGKLFRELKDIAPQTNS 2127
            FSIAVDFPKTGVPAEIPS L  KEYPDFM+K  DK TY S RVIGKL+R++KD APQ +S
Sbjct: 886  FSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASS 945

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
               FT DVA++ YD D+EVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 946  TAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD EAI +AVR+LRKEARTWF+ +     +  +D+  KASAWYHVTYHP+
Sbjct: 1006 MKTSKTFDRRKDAEAISIAVRALRKEARTWFKRR-----NDIDDMLPKASAWYHVTYHPT 1060

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 2583
            Y+G YN+G+KRDH++SFPWCVYD+L+ IKK  +
Sbjct: 1061 YWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 1093


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score = 1159 bits (2998), Expect = 0.0
 Identities = 593/894 (66%), Positives = 688/894 (76%), Gaps = 17/894 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 228  ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 287

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+  FFRLV PQ   +A IE+ALEKLY+LKECCY+PV WL EQY  Y   +  PK P+
Sbjct: 288  PALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 347

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 348  INLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            DL P+    +   T IY RILSTLR G VIGDKKF+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 408  DLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLT 467

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR WMGDF +I+NVAKY+ARLGQSF SSTETL+V R             +G  YVFS
Sbjct: 468  AIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFS 525

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FAR+VA  CG++ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 526  DGIGKISADFARRVASKCGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESD 585

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVL WSK+Q C+LNRQL+TLLSTLGV+D + E+KQKE VDQL++IL D  KA EAL
Sbjct: 586  NNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEAL 645

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGY PD EPFLSMMLQTF+ASKLL+L+ K+RIFIPNGR MMGC
Sbjct: 646  ELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGC 705

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  ++E         S     I +G V+VAKNPCLHPGD+
Sbjct: 706  LDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDI 765

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++ M+
Sbjct: 766  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAME 825

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDHDV IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA L
Sbjct: 826  YPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAEL 885

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LDKPTYESHRVIGKLFRELKDIAPQTNS 2127
             SIAVDFPKTGVPAEIP  L  KEYPDFM+K  DK TY S RVIGKL+R++KD APQ +S
Sbjct: 886  CSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASS 945

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
               FT DVA++ YD D+EVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 946  TAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD EAI +AVR+LRKEARTWF+ +     +  +D+  KASAWYHVTYHP+
Sbjct: 1006 MKTSKTFDRRKDAEAISIAVRALRKEARTWFKRR-----NDIDDMLPKASAWYHVTYHPT 1060

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKK----NNSTRTTESFEHQLIRGLRL 2634
            Y+G YN+G+KRDH++SFPWCVYD+L+ IKK    N       S   QL R L L
Sbjct: 1061 YWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSRKLVL 1114


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score = 1159 bits (2997), Expect = 0.0
 Identities = 588/873 (67%), Positives = 681/873 (78%), Gaps = 13/873 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 76   EKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 135

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+  FFRLV PQ   +A IE+ALEKLY+LKECCY+PV WL EQY  Y   +  PK P+
Sbjct: 136  PALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 195

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 196  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 255

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            +L P+    +   T IY RILSTLR G VIGDKK +FLAFSSSQLRDNS WMFAS  G T
Sbjct: 256  ELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMFASRPGLT 315

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
            A  IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R             +G  YVFS
Sbjct: 316  ANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFS 373

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FAR+VA  CG++ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 374  DGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESD 433

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVL WSK+Q C+LNRQLITLLSTLGV+D + E+KQKE VDQL++IL D  KA EAL
Sbjct: 434  NNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEAL 493

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGY PD EPFLSMMLQTF+ASKLL+L+ K+RIFIPNGRAMMGC
Sbjct: 494  ELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGC 553

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  ++E         S     I +G V+VAKNPCLHPGD+
Sbjct: 554  LDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDI 613

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++PM+
Sbjct: 614  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPME 673

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDHDV IEEV+EYFTNY+VNDSLGII+NAH  FAD+EP  A S  C  LA L
Sbjct: 674  YPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAEL 733

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LDKPTYESHRVIGKLFRELKDIAPQTNS 2127
             SIAVDFPKTGVPAEIPS L  KEYPDFM+K  DK TY S RVIGKLFR++KD APQ +S
Sbjct: 734  CSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASS 793

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
               FT DVA++ YD D+EVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 794  TAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGI 853

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD EAI +AVR+LRKEARTWF     K  +  +D+  KASAWYHVTYHP+
Sbjct: 854  MKTSKTFDRRKDAEAISIAVRALRKEARTWF-----KRHNDIDDMLPKASAWYHVTYHPT 908

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 2583
            Y+G YN+G+KRDH++SFPWCVYD+L+ IKK  +
Sbjct: 909  YWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 941


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1156 bits (2990), Expect = 0.0
 Identities = 585/873 (67%), Positives = 683/873 (78%), Gaps = 13/873 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 228  ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 287

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+  FFRLV PQ   +A IE+ALEKLY+LKECCY+PV WL EQY  Y   +  PK P+
Sbjct: 288  PALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 347

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 348  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 407

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            +L P+    +   T IY RILSTLR G VIGDKKF+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 408  ELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLT 467

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
               IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R             +G  YVFS
Sbjct: 468  TNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFS 525

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FAR+VA  CG++ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 526  DGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESD 585

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVL WSK+Q C+LNRQL+TLLSTLGV+D + E+KQKE V QL++IL D  KA EAL
Sbjct: 586  NNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEAL 645

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGY PD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGRAMMGC
Sbjct: 646  ELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGC 705

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  ++E         S     I +G V+VAKNPCLHPGD+
Sbjct: 706  LDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDI 765

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++ M+
Sbjct: 766  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAME 825

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDH+V IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA L
Sbjct: 826  YPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAEL 885

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LDKPTYESHRVIGKLFRELKDIAPQTNS 2127
            FSIAVDFPKTGVPAEIPS L  KEYPDFM+K  DK TY S RVIGKLFR++KD APQ +S
Sbjct: 886  FSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASS 945

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
            I  FT DVA++ YD D+EVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 946  IAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD EAI +AVR+LRKEARTWF+ +     +  +D+  KASAWYHVTYHP+
Sbjct: 1006 MKASKTFDRRKDAEAISVAVRALRKEARTWFKRR-----NDIDDMLPKASAWYHVTYHPT 1060

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 2583
            Y+G YN+G+KRDH++SFPWCVYD+L+ IKK  +
Sbjct: 1061 YWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 1093


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score = 1156 bits (2990), Expect = 0.0
 Identities = 585/873 (67%), Positives = 683/873 (78%), Gaps = 13/873 (1%)
 Frame = +1

Query: 4    ENFHYYKEVESRFFLESGSTF--SQSLDLVPIVGPPQGLELPYNILFKINSLVQNGCLAG 177
            E+F +Y E E+   L++G TF  SQ   LVP V PP+G+ +PY ILFKI+SLVQ+GC+ G
Sbjct: 76   ESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPG 135

Query: 178  PTLDASFFRLVHPQFMPIAYIERALEKLYHLKECCYEPVTWLNEQYAKYRSLKNVPKPPA 357
            P L+  FFRLV PQ   +A IE+ALEKLY+LKECCY+PV WL EQY  Y   +  PK P+
Sbjct: 136  PALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 195

Query: 358  ISLNEGLVYVRRVQITPSKVYFCGPEVIVSNRVLRNYSEVIDNFIRVSFVDEGGEKMRST 537
            I+L++GLVYVRRV +TP KVYFCGPEV VSNRVLRNYSE IDNF+RVSFVDE  EK+ ST
Sbjct: 196  ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 255

Query: 538  DLSPRTKNEDKKHTEIYRRILSTLRNGIVIGDKKFDFLAFSSSQLRDNSAWMFASGDGFT 717
            +L P+    +   T IY RILSTLR G VIGDKKF+FLAFSSSQLRDNS WMFAS  G T
Sbjct: 256  ELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLT 315

Query: 718  AAKIREWMGDFREIRNVAKYSARLGQSFSSSTETLTVSRXXXXXXXXXXXXRNGIKYVFS 897
               IR WMGDF +I+NVAKY+ARLGQSF SS ETL+V R             +G  YVFS
Sbjct: 316  TNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFS 373

Query: 898  DGIGKISEKFARKVAKVCGIKSSPSAFQIRYGGYKGVVAVDPKSVMKLSLRRSMFKYTSQ 1077
            DGIGKIS  FAR+VA  CG++ +PSAFQIRYGGYKGVVAVDP S MKLSLR+SM KY S 
Sbjct: 374  DGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESD 433

Query: 1078 NIKLDVLAWSKFQTCFLNRQLITLLSTLGVEDRIFEKKQKEVVDQLNSILTDPQKALEAL 1257
            N KLDVL WSK+Q C+LNRQL+TLLSTLGV+D + E+KQKE V QL++IL D  KA EAL
Sbjct: 434  NNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEAL 493

Query: 1258 QIMSPGENVNVLREMLLCGYKPDEEPFLSMMLQTFKASKLLELKNKTRIFIPNGRAMMGC 1437
            ++MSPGEN N+L+ ML CGY PD EPFLSMMLQTF+ASKLL+L+ ++RIFIPNGRAMMGC
Sbjct: 494  ELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGC 553

Query: 1438 LDETSTLEYGQVFVQVTSLGHDRYNE---------SYQRTSIKEGVVIVAKNPCLHPGDL 1590
            LDE+ TLEYGQVFVQ T  GH  ++E         S     I +G V+VAKNPCLHPGD+
Sbjct: 554  LDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDI 613

Query: 1591 RVLRAVNVPALHHMVDCVVFPQKGDRPHPNECSGSDLDGDIYFVSWDRELIPPRQIEPMD 1770
            RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD+++IPPRQ++ M+
Sbjct: 614  RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAME 673

Query: 1771 YTPALPALLDHDVKIEEVQEYFTNYMVNDSLGIIANAHTAFADKEPGKAESKACIDLARL 1950
            Y PA    LDH+V IEEV+EYFTNY+VNDSLGIIANAH  FAD+EP  A S  C  LA L
Sbjct: 674  YPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAEL 733

Query: 1951 FSIAVDFPKTGVPAEIPSHLHVKEYPDFMEK-LDKPTYESHRVIGKLFRELKDIAPQTNS 2127
            FSIAVDFPKTGVPAEIPS L  KEYPDFM+K  DK TY S RVIGKLFR++KD APQ +S
Sbjct: 734  FSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASS 793

Query: 2128 IKSFTWDVAKKCYDYDMEVDGFEDYIDEAYYYKGRYDFKLGNLMDYYKIKTEAEILGRSI 2307
            I  FT DVA++ YD D+EVDGFEDYIDEA+ YK  YD KLGNLMDYY IKTEAEIL   I
Sbjct: 794  IAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 853

Query: 2308 M-VSKSFDRKKDGEAIGLAVRSLRKEARTWFEEKGTKSGSRTNDLYAKASAWYHVTYHPS 2484
            M  SK+FDR+KD EAI +AVR+LRKEARTWF+ +     +  +D+  KASAWYHVTYHP+
Sbjct: 854  MKASKTFDRRKDAEAISVAVRALRKEARTWFKRR-----NDIDDMLPKASAWYHVTYHPT 908

Query: 2485 YFGSYNEGMKRDHYLSFPWCVYDKLVSIKKNNS 2583
            Y+G YN+G+KRDH++SFPWCVYD+L+ IKK  +
Sbjct: 909  YWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 941