BLASTX nr result
ID: Akebia27_contig00005951
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00005951
(3365 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 1464 0.0
ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prun... 1410 0.0
ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Th... 1399 0.0
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1394 0.0
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 1384 0.0
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 1384 0.0
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 1376 0.0
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 1375 0.0
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1362 0.0
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1358 0.0
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1344 0.0
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1343 0.0
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 1343 0.0
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 1342 0.0
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 1338 0.0
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 1321 0.0
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1319 0.0
ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phas... 1319 0.0
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1291 0.0
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 1248 0.0
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 1464 bits (3791), Expect = 0.0
Identities = 718/1041 (68%), Positives = 847/1041 (81%), Gaps = 2/1041 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
LVF+ + L IS +F++IIVRP E +N+V GVLHVGFLVE DC+ VLESW+ VK +MPE
Sbjct: 76 LVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEGVKTLVMPE 135
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
R + EFWV + GE YKLE+ F DVL C L G +NA+LLKLKYAPKI++K +GP +
Sbjct: 136 RNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQKFAGPNIA 195
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+ DRYHI KE+ EF+W+RTTD FCW+++ A DI ++P+Y+ +
Sbjct: 196 SKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASFPYYK-D 254
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
L +LTL+ GE FCS+S +VPL+K S KLAYEILFQLNSLVH+QKISLAAV+TDLIE+L
Sbjct: 255 LTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLAAVDTDLIEIL 314
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
S+L VD+A MILQKLH+ KST Y+PISF+++Q H + N KNLP SS RL N+M+CH
Sbjct: 315 SNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCH 374
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
RVL+TPSK+Y LGPE+E++NYVVKHYAAYASDF+RVSFVEEDWSK PS+A+S S+ + F
Sbjct: 375 RVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALSMSIRKAFF 434
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
+ P+RT IYHRILSILR+GI IGAKRF+FLAFSASQLRSNSVWMFASND V ++IR WM
Sbjct: 435 ADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWM 494
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCF KIR+VSKCAARMGQLFSSS+QT VP QDV +IPD+EVT+DG YCFSDGIGKIS
Sbjct: 495 GCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISL 554
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
SFAKQVA KCGL QTPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKF+S+N+MLNVT
Sbjct: 555 SFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTK 614
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMG--DV 1569
WSES PCYLNREIVSLLSTLG+ED+ FEA+ +EQ+ LLDKMLT+R AL+VLE MG D
Sbjct: 615 WSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDN 674
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
KNI+ KMLLQGYEP EPYL MML+A+RE QLSDIRT+CR+FVPK RVL+GCLDETG L
Sbjct: 675 KNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILN 734
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVYVRVTM +AE + +Q+FF KNPCLHPGDIRVL+AVYE
Sbjct: 735 YGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVE 794
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK LVDC++FPQ+GERPHPNECSGGDLDGD FFI WDE LIP T+ PMDY RRPRI
Sbjct: 795 LEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRI 854
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDHDVTLEEIQKFF+DYMINDTLGVISTAHLVHADREP+KARS KCL+LATLHSMAVDFA
Sbjct: 855 MDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFA 914
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAEMPRVLKPKE+PDFMER D+PMY S G LGKLYRATI N+ FVWS +
Sbjct: 915 KTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIP 974
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
AAYDH+LEV+GFE FLE A+ HK Y EK++ LMN+YGAE E+E+LTGNLRN+ +YLQR
Sbjct: 975 GAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQR 1034
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFL 309
D +++TE+KDRIL+S KSLQKE K+W + SCK H++ KMASAWYHVTYH + NFL
Sbjct: 1035 DNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFL 1094
Query: 308 SFPWIVGDILLNVKAMKSRRS 246
SFPWIVG++LL +K+ SR++
Sbjct: 1095 SFPWIVGEVLLVIKSANSRKA 1115
>ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
gi|462407047|gb|EMJ12511.1| hypothetical protein
PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 1410 bits (3650), Expect = 0.0
Identities = 675/1041 (64%), Positives = 841/1041 (80%), Gaps = 3/1041 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
LVF++ L +S ++++II RP + + R+ VLH GF+V+ DC+ +LESW+ V+A +MPE
Sbjct: 76 LVFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLESWEGVRAWVMPE 135
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
RK+ EFWV E YKLEI F +++ FGCRL GE +NA+LLKLK+ P+I++KISGP +
Sbjct: 136 RKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPRIFRKISGPNVA 195
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHY-EG 2826
A+F+TDRYH+CK++F+F+WVRTTD FCW++E SD+ +P+Y +
Sbjct: 196 ARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSDVFECFPYYKDN 255
Query: 2825 ELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIEL 2646
++ DL L +GE++CS SE VPL+K S+SKL YEILFQLN+LVHSQKISLAA ++DLIE
Sbjct: 256 DVVDLILDNGEKYCSPSETVPLVKCRSDSKLPYEILFQLNALVHSQKISLAATDSDLIEF 315
Query: 2645 LSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTC 2466
LS LSVD+ +++L+KLH+ K+TCY+P+SF++ QLH ++ N K+ PS +RL E N+M+C
Sbjct: 316 LSGLSVDTTNVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSP-YKRLMEHNVMSC 374
Query: 2465 HRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGV 2286
HRVLITPSK+ LGPE+E +NYVVK++AAYASDF+RV+FV+EDWSK P++AIS S+++G+
Sbjct: 375 HRVLITPSKICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPANAISTSIQQGI 434
Query: 2285 FSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVW 2106
F+KP+RTGIYHR+LSILRDGI IG KRFEFLAFSASQLRS+SVWMF+SNDNV AE+IR W
Sbjct: 435 FAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAEDIREW 494
Query: 2105 MGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKIS 1926
MGCF+KIR++SKCAARMGQLFSSS QT +VP QDV IIPDVE ++DG++YCFSDGIGKIS
Sbjct: 495 MGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKIS 554
Query: 1925 YSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVT 1746
SFA++VA KCGL QTPSAFQIRYGGYKGVIAVD SFRKLSLR SMLKF+SKN+MLNVT
Sbjct: 555 LSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRMLNVT 614
Query: 1745 SWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMG--D 1572
WS+++PCYLNREI+SLLSTLG++D+ FEA+Q EQ+RLL KM T R ALNV E + D
Sbjct: 615 KWSDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERLNGAD 674
Query: 1571 VKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTL 1392
KN +VKMLL GYEP EPYL MML+A+ E LSD++++CR+FVPKGRVL+GCLDETG L
Sbjct: 675 SKNTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDETGNL 734
Query: 1391 KYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEP 1212
YGQVYVR+TM +AE ++ DQ+FF KNPCLHPGD+RVL+AVY+
Sbjct: 735 DYGQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDAVYDV 794
Query: 1211 ILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPR 1032
+LEEKN+VDCL+FPQ+GERPHPNECSGGDLDGDLFFISWD++L+P +T PMDY RRPR
Sbjct: 795 VLEEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHTVPPMDYSARRPR 854
Query: 1031 IMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDF 852
IMDH VTLEEIQKFF+DYMIND LG ISTAHLVHAD EPDKA +PKCLQLA LHSMAVDF
Sbjct: 855 IMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCLQLADLHSMAVDF 914
Query: 851 AKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEV 672
AKTGAPAEM R LKPKE+PDFMER D+PMY S G LGKLYRA + + + VWSE++
Sbjct: 915 AKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNLVWSEQI 974
Query: 671 ARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQ 492
A AAYD +LEV+G E+ LE A+ H+ Y EK+ +MNYYGA E+EILTGNLRNR+ YLQ
Sbjct: 975 AEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEILTGNLRNRAAYLQ 1034
Query: 491 RDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNF 312
RD ++Y ++KDRI +S K+LQKE K F SSC E+ +MASAWYHVTYHP+Y + N
Sbjct: 1035 RDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPVSEHQRMASAWYHVTYHPSYFQQDMNC 1094
Query: 311 LSFPWIVGDILLNVKAMKSRR 249
LSFPWIVGDILLN+KA+ + R
Sbjct: 1095 LSFPWIVGDILLNIKALNNPR 1115
>ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|590663258|ref|XP_007036162.1| RNA-dependent RNA
polymerase 2 isoform 1 [Theobroma cacao]
gi|508773406|gb|EOY20662.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao] gi|508773407|gb|EOY20663.1|
RNA-dependent RNA polymerase 2 isoform 1 [Theobroma
cacao]
Length = 1149
Score = 1399 bits (3622), Expect = 0.0
Identities = 676/1040 (65%), Positives = 839/1040 (80%), Gaps = 3/1040 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
LVF++ L++S ++++II RP +R+ GVLHVGF+V+ D L+VLE W+ V+ +MPE
Sbjct: 83 LVFKSHSLKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLERWEDVRGWLMPE 142
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
R++ EFW+ GE YKLE+ F DVL GC +G NA+LL++KYAP+IY+K+SGP +
Sbjct: 143 RRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAPRIYQKVSGPNIA 202
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+K DRYHICKENF+F+WVRTTD F W++ L D+ + + Y +
Sbjct: 203 SKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTLDLFSCFSCYRED 262
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
+K LTL+ G +F S EIVPL+K PS+SKLAYEILFQLNSLVH+QKIS+A+V+TDLI++L
Sbjct: 263 MKGLTLKGGGEFSSAPEIVPLVKGPSDSKLAYEILFQLNSLVHTQKISIASVDTDLIDIL 322
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
L+V++A MILQK H++ STCY P+SFV+ L + N ++ P SS +RL + N+M+CH
Sbjct: 323 RVLAVETAVMILQKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCH 382
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
R L+TPSK+Y LGPE+ET+NYVVK++A YASDF+RVSFVEEDW K ++AIS SV+ G+F
Sbjct: 383 RALVTPSKIYCLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQLGIF 442
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
SKP+RT IYHRILS+L+ GI IG KRFEFLAFSASQLRSNSVWMFASND V+AE++R WM
Sbjct: 443 SKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWM 502
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCF KIR+VSKCAARMGQLFSSSL T +VP QDV IIPD+EVT+DGI+YCFSDGIGKIS
Sbjct: 503 GCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISL 562
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
FA++VA KCGL+ TPSAFQIRYGGYKGV+AVDRNSFRK+SLR SM KF+SK +MLNVT
Sbjct: 563 PFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTK 622
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GDV 1569
WSES+PC+LNREIV+LLSTLGI+D+ FE +Q EQ+ LL +MLT+R+ AL+VL+ + D
Sbjct: 623 WSESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADS 682
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
+NI+VKMLLQGYEP EPYL MML A+ LSD++ +CR++VPKG+VL+GCLDET TL
Sbjct: 683 QNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLN 742
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVYVR+++K+AEL+ +DQ FFH KNPCLHPGD+RVLEAVYE
Sbjct: 743 YGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAE 802
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LE+K LVDCLVFPQ+GERPHPNECSGGDLDGD FFISWD++LIP TD PMDY G RPRI
Sbjct: 803 LEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTDAPMDYTGSRPRI 862
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDH+VTLEEIQKFF+DYMINDTLG ISTAHLVHADREPDKARS KCL+LATLHSMAVDFA
Sbjct: 863 MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVDFA 922
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAEMPR LKP+E+PDFM+R D+PMY S GVLGKLYRATI T + FVWS+++A
Sbjct: 923 KTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKKMA 982
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
A YDH+LEVNGFEAFL TA+THK Y EK+S LMNYY E E+EILTGN+RN++ +LQR
Sbjct: 983 EALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFLQR 1042
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGF-NF 312
D ++Y ++KDRIL+S K+LQ+E ++ F +SCK E+ ++ASAWYHVTYHPNYC++ +
Sbjct: 1043 DNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQRLASAWYHVTYHPNYCQESMKSC 1102
Query: 311 LSFPWIVGDILLNVKAMKSR 252
LSFPWIVGDILL +K++ SR
Sbjct: 1103 LSFPWIVGDILLKIKSVNSR 1122
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 1394 bits (3608), Expect = 0.0
Identities = 675/1060 (63%), Positives = 848/1060 (80%), Gaps = 20/1060 (1%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KLVF + L+IS + +I+ RP + Q+RV +GVLHVG + +++ L+VL++++ V+ ++P
Sbjct: 72 KLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGWLLP 131
Query: 3185 ERKKFEFWV--AEGGE---------------SYKLEIQFGDVLACFGCRLS-GEDLNAVL 3060
+R++ EFWV GE +K+EI F DVL G L G +N +L
Sbjct: 132 DRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVNGIL 191
Query: 3059 LKLKYAPKIYKKISGPTLDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKV 2880
KLKY PKIY+K+SGP + +KF +DRYHICKE+F+F WVRTTD F W++
Sbjct: 192 FKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFFWEI 251
Query: 2879 ENRSLASDISTTYPHYEGELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSL 2700
+N LASDIS +P Y+ + DL L+ GE+FC+ SEIVPL+K L++E+LFQLNSL
Sbjct: 252 KNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVKCRPGFNLSHEVLFQLNSL 311
Query: 2699 VHSQKISLAAVNTDLIELLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQK 2520
VH+QK+SL A + +LI++L+ LS+++A M+LQKLH++KS CY+P+SFV++QLH + N K
Sbjct: 312 VHNQKVSLVAADAELIQILNGLSMETALMVLQKLHKLKSICYDPVSFVKTQLHVLGRNCK 371
Query: 2519 NLPSSSQRRLAEQNLMTCHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEE 2340
++P SS +RL + N+M+C+R L+TP K+Y LGPE+ET+NYVVK++A YASDF+RV+FVEE
Sbjct: 372 SIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKYASDFMRVTFVEE 431
Query: 2339 DWSKAPSDAISKSVERGVFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNS 2160
DWSK P++A+S S++RG+F+KPYRT IY RIL+IL+DGI IG K +EFLAFSASQLR+NS
Sbjct: 432 DWSKLPANALSTSIQRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEFLAFSASQLRNNS 491
Query: 2159 VWMFASNDNVSAEEIRVWMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVE 1980
VWMFASND VSAE++R WMGCFNKI +VSKCAARMGQLFSSS QT +VP QDV +IPDVE
Sbjct: 492 VWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVVPVQDVEMIPDVE 551
Query: 1979 VTTDGISYCFSDGIGKISYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLS 1800
VT+DG +YCFSDGIGKIS SFA+QVA KCGLS TPSAFQIRYGGYKGVIAVDRNSFRKLS
Sbjct: 552 VTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKGVIAVDRNSFRKLS 611
Query: 1799 LRQSMLKFDSKNKMLNVTSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKM 1620
LR+SMLKF+S+N+MLNVT WSES+PC+LNREI+SLLSTLG++DD FEAMQ +Q+ LL KM
Sbjct: 612 LRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDDVFEAMQQQQLILLGKM 671
Query: 1619 LTSRDTALNVLEGMG--DVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRV 1446
L +R+ AL+VL+ + D KNI+VKMLLQGYEP EPYL MML +H E QLSD++++CR+
Sbjct: 672 LINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHHENQLSDLKSRCRI 731
Query: 1445 FVPKGRVLMGCLDETGTLKYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXK 1266
+VPKGR+L+GC DETG L YGQV+VRVTM R EL+ DQ+FFH K
Sbjct: 732 YVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDDKTSIVKGKVLVTK 791
Query: 1265 NPCLHPGDIRVLEAVYEPILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDEN 1086
NPCLHPGD+RVLEAVYE LEEK+ VDC++FPQ+GERPHPNECSGGDLDGD+FFISWD +
Sbjct: 792 NPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGDLDGDIFFISWDND 851
Query: 1085 LIPLNTDMPMDYIGRRPRIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKA 906
LIP T+ PMDY GRR RIMDHDVTLEEI KFF+DYMINDTLG ISTAHLVHADR+PDKA
Sbjct: 852 LIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVHADRDPDKA 911
Query: 905 RSPKCLQLATLHSMAVDFAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRA 726
RS KCL LATLHSMAVDFAKTGAPAEMP LKPKE+PDFMERED+P Y S GVLGKLYRA
Sbjct: 912 RSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPRYISFGVLGKLYRA 971
Query: 725 TIRPTENQDLDFVWSEEVARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAE 546
T+ + +WSE++A A+YDH+LEV+GFEAFL AE+HK Y E+++ALMNYYGA
Sbjct: 972 TLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGAS 1031
Query: 545 CEEEILTGNLRNRSVYLQRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMAS 366
E+EILTGNLRNR+ YLQRD ++Y ++KDRIL+S K+LQ E K+WF SSCKE+E+ ++AS
Sbjct: 1032 TEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCKENEHPQLAS 1091
Query: 365 AWYHVTYHPNYCRDGFNFLSFPWIVGDILLNVKAMKSRRS 246
AWYHVTY P+YC++ LSFPWIVGDILLN+K++ SR++
Sbjct: 1092 AWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 1384 bits (3582), Expect = 0.0
Identities = 676/1040 (65%), Positives = 819/1040 (78%), Gaps = 2/1040 (0%)
Frame = -1
Query: 3359 VFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPER 3180
VF++ L I + ++I+ P + + R+ +GVLH GF++ D + VL+SW+ V+A MPER
Sbjct: 78 VFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQSWEGVRAWAMPER 137
Query: 3179 KKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLDA 3000
+ EFWV + YKLE+ F DVL G L L A LL+LKY PKIYK+IS P+
Sbjct: 138 NRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPKIYKRISRPS--- 194
Query: 2999 KFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGEL 2820
KF DRYHICKE+FEF WVRTTD CW + L+SD ++P+Y +
Sbjct: 195 KFVADRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDTFRSFPYYREGM 254
Query: 2819 KDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELLS 2640
KDL L+ ++FCS SE VPLIK P+ S L+YEILFQLNSLVH QKIS A+ + DLIE
Sbjct: 255 KDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKISFASADADLIEYFG 314
Query: 2639 SLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCHR 2460
SL++D+A+ ++QKLH++KSTCY+P+S ++ H ++ N KN PSS+ +RL E +LM+CHR
Sbjct: 315 SLNIDTANAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKN-PSSAIKRLTENSLMSCHR 373
Query: 2459 VLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVFS 2280
LITPSK+Y +GPE+ET+NYVVK++AAYASDFLRV+FVEEDW K +S S+E+G+F+
Sbjct: 374 ALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVSTSIEQGIFA 433
Query: 2279 KPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWMG 2100
KPYRTGIY RILSILR+GI IGAKR+EFLAFSASQLRS++VWMFASNDNV AE+IR WMG
Sbjct: 434 KPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAEDIREWMG 493
Query: 2099 CFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISYS 1920
CFNKIR+VSKCAARMGQLFSSS QT IVPTQD+ IIPDVEVTTDGI YCFSDGIGKIS S
Sbjct: 494 CFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSS 553
Query: 1919 FAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTSW 1740
FA+QVA KCGL +TPSAFQIRYGGYKGVIAV+R+SFRKLSLR SMLKF+S N+MLNVT W
Sbjct: 554 FARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRMLNVTKW 613
Query: 1739 SESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMG--DVK 1566
S S+PCYLNREIVSLLS+LG++D+ F A+ EQ+ LL KM T+R+ ALNVLE + D
Sbjct: 614 SGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNVLENLNGSDSS 673
Query: 1565 NIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLKY 1386
NI+VKMLLQGYEP EPYL MM++++ E QLSD++T+CR+FVPKG+VL+GCLDETG L+Y
Sbjct: 674 NILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEY 733
Query: 1385 GQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPIL 1206
GQVYVR+TMK+AEL+ +Q+FF KNPCLHPGD+RVLEAVY+ L
Sbjct: 734 GQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKL 793
Query: 1205 EEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRIM 1026
EE+ LVDCLVFPQ+GERPHPNECSGGDLDGDLFFISWD NLIP T PMDYIGRRPRIM
Sbjct: 794 EEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPRTTAPMDYIGRRPRIM 853
Query: 1025 DHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFAK 846
DHDVTLEEIQKFF+DYMINDTLG ISTAHL+HADREP+KA S CLQLATLHSMAVDFAK
Sbjct: 854 DHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLATLHSMAVDFAK 913
Query: 845 TGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVAR 666
TGAPAEMPR L+P++YPDFMER DRPMY S G LGKLYRAT+ + VWSE+ A
Sbjct: 914 TGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSNLVWSEKTAE 973
Query: 665 AAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQRD 486
AAYD +LEVNGFE F+ AE+H+ Y +K++ +MNYY E E+E+LTGNLR R+ YLQRD
Sbjct: 974 AAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNLRKRAAYLQRD 1033
Query: 485 KKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFLS 306
++Y E+KDRIL++ KSLQ+E K WF SC+ E KMASAWYHVTYHPNY + N LS
Sbjct: 1034 NRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQKMASAWYHVTYHPNYYQKSINCLS 1093
Query: 305 FPWIVGDILLNVKAMKSRRS 246
FPWI GDILLN+K++ S+R+
Sbjct: 1094 FPWIKGDILLNIKSINSQRN 1113
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 1384 bits (3581), Expect = 0.0
Identities = 676/1043 (64%), Positives = 832/1043 (79%), Gaps = 3/1043 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KLV ++ L++S ++++II RP + QNR+ GVL+VGF+ ++ L VLE W+ V+ MP
Sbjct: 76 KLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEGVRGWFMP 135
Query: 3185 ERKKFEFWVAEGGE-SYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPT 3009
ER++ EFW+ G E YKL ++F D+L G L G+ +NAV+LKL+Y P+IY+KISGP
Sbjct: 136 ERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIYQKISGPG 195
Query: 3008 LDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYE 2829
+ +KF+T+RY CKE+F+F+WVRTTD FCW++ ASD +P+Y+
Sbjct: 196 IASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFPYYQ 255
Query: 2828 GELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIE 2649
++ L L+ GE+FCS SE VPLI+ S+ KLAYE+LFQLNSLVH+QKISLAAV++DLI+
Sbjct: 256 EDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAAVDSDLIK 314
Query: 2648 LLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMT 2469
+L +L+V++A +ILQKLH++K TCY+P+SFV+ L SS + L E N+M+
Sbjct: 315 ILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSLRESL-------SSPPKSLTENNIMS 367
Query: 2468 CHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERG 2289
CHR LITPSK++ LGPE ET+NYVVKH+A YASDF+RV+FVEEDWSK P++AIS S++RG
Sbjct: 368 CHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTSIQRG 427
Query: 2288 VFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRV 2109
+F+KP+RTGIYHRILSILRDG IGAKRFEFLAFSASQLRSNSVWMFASN+ V AE+IR
Sbjct: 428 IFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRK 487
Query: 2108 WMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKI 1929
WMGCF+KIR+VSKCAARMGQLFSSSLQTF+VP QDV IIPD+EVTTDGI YCFSDGIGKI
Sbjct: 488 WMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKI 547
Query: 1928 SYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNV 1749
S SFAKQVA+KCGLS TPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFDS+N+MLNV
Sbjct: 548 SLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNV 607
Query: 1748 TSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMG-- 1575
T WSES+PCYLNREI+SLLSTLG+ D+ F+A+Q +Q+ L KMLT++++AL+VLE +
Sbjct: 608 TKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWA 667
Query: 1574 DVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGT 1395
D KNI+V+MLLQGYEP EPYL MML+A+ E L ++R++CR+FVPKGR+L+GCLDE+G
Sbjct: 668 DSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGI 727
Query: 1394 LKYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYE 1215
L YGQVYVR+TM +AELQ DQ+FF KNPCLHPGDIRVLEAVY+
Sbjct: 728 LDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYD 787
Query: 1214 PILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRP 1035
LEEK LVDC++FPQ G RPHPNECSGGDLDGD FFISWDE L+P +T+ PMDY+G R
Sbjct: 788 VELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQ 847
Query: 1034 RIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVD 855
RIMDH+VTLEEIQ+FF+DYMINDTLG ISTAHLVHAD EPDKARS KCLQLATLHSMAVD
Sbjct: 848 RIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVD 907
Query: 854 FAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEE 675
FAKTGAPAEMP LKP+E+PDFMER ++ MY S GVLGKLYR T + +F+WS++
Sbjct: 908 FAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKK 967
Query: 674 VARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYL 495
+A A YD +LEV GFE FL A +K Y EK+S LM+YYGA+ E+EILTGNLR+R YL
Sbjct: 968 IAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYL 1027
Query: 494 QRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFN 315
QRD +KY ++KDRILVS K+L+KE K+WF SSC E+ MASAWYHVTYHP Y + N
Sbjct: 1028 QRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMN 1087
Query: 314 FLSFPWIVGDILLNVKAMKSRRS 246
LSFPWIVGDILLN+K++ SR +
Sbjct: 1088 CLSFPWIVGDILLNIKSLNSRNA 1110
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 1376 bits (3561), Expect = 0.0
Identities = 668/1040 (64%), Positives = 821/1040 (78%), Gaps = 2/1040 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
LVF L S ++I+VRP NR GVLHVGF+++++ + VLESW+ VKA IMPE
Sbjct: 76 LVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEGVKAWIMPE 135
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
R++ EFW+ E YKLE+ F ++L G L E LNA+LLKLKYAP+IYKKISG +
Sbjct: 136 RRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISGSNMA 195
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
++F++ RY +C E+++++WVRTT+ FCW+VE ASDI + +P Y+
Sbjct: 196 SRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKET 255
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
KD+ L+ GE+FCS SEIVPLIK S LAYE+ +QLNSLVH QKISL+A N DLI+ L
Sbjct: 256 QKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLIDFL 315
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
+L +D+A +LQ+LH++K CY+P+SF+++QLH K N K+LP SSQ+RL+ N+M C+
Sbjct: 316 CTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSN-NVMNCY 374
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
RVL+TPS++Y LGPE+ET+NYVVK++++YASDF+RV+FVEEDWSK P+ A++ S++RG+
Sbjct: 375 RVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGIL 434
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
SKPYRT IYHRI+++LRDGI IGAKRFEFLAFSASQLRSNSVWMFAS+DN+ AEEIR WM
Sbjct: 435 SKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWM 494
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCF KIR++SKCAARMGQLFSSS QT +VPT+DV IIPD+EV TDGI YCFSDGIGKIS
Sbjct: 495 GCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISL 554
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
SFA+QVA KCG++ PSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKF+SKNKMLNVT
Sbjct: 555 SFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTK 614
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GDV 1569
+S+PCYLNREI +LLSTLG++D+ FEA+Q EQ+ LL +MLT +D ALNVLE D
Sbjct: 615 CCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADS 674
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
NI+V+ML GYEP EPYL MML+AH SD+R++CR+FVPKGR+L+GCLDETG L
Sbjct: 675 NNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILN 734
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVY +T+ ++ELQ +Q +FH KNPCLHPGD+RVLEA++
Sbjct: 735 YGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVE 794
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK LVDCL+FPQ+G RPH NECSGGDLDGDL+FISWDENLIP T+ PMDY GRRPRI
Sbjct: 795 LEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRI 854
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDHDV LEEIQKFF+DYMINDTLG ISTAHLVHADREP KA S KCL+LA LHSMAVDFA
Sbjct: 855 MDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFA 914
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAEMPRVLKP+E+PDFMER D+PMY S VLGKLYRA ++ E + VWSEE A
Sbjct: 915 KTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAA 974
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
RA YD++LEV+GFEAFLE AET+K Y EK+S LMNYYGAE E+EIL G+LR+R+ YLQR
Sbjct: 975 RAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQR 1034
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFL 309
D +KY ++KDRIL+S K+L+KEVK+WF +SC MASAWYHVTYHP+Y ++ +
Sbjct: 1035 DNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHVTYHPSYFKEDMFYF 1094
Query: 308 SFPWIVGDILLNVKAMKSRR 249
SFPW V D+LLN+KAM S+R
Sbjct: 1095 SFPWAVSDVLLNIKAMNSKR 1114
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 1375 bits (3559), Expect = 0.0
Identities = 668/1042 (64%), Positives = 824/1042 (79%), Gaps = 3/1042 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KLVF+ L ++ SF++II RP E+ R +G+LH G L+E D ++VLE+W++VK IMP
Sbjct: 77 KLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWENVKTLIMP 136
Query: 3185 ERKKFEFWVAEG-GESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPT 3009
ERK EFWV+ GE Y+LE+QFGD++ C L E A+LLKLK+APK+Y+++SGP
Sbjct: 137 ERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEK-TALLLKLKHAPKLYQRVSGPG 195
Query: 3008 LDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYE 2829
+ +KF++DRYH+C+E+ EF+WVRTTD CW++E+ L+SD+ + P+
Sbjct: 196 VASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSGLPYCN 255
Query: 2828 GELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIE 2649
++ DL L S SE+VPL FPS+ KL YEILFQLNSL+H+ KISL AV TDLIE
Sbjct: 256 NDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIE 315
Query: 2648 LLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMT 2469
+LS L +D+A MILQK+H+++STC+EP+ F++++LH + N KN PSSS RL QN+M+
Sbjct: 316 VLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMMS 375
Query: 2468 CHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERG 2289
HRVL+TPSKVY LGPE+ET+NY+VK++A +ASDFLRV+FVEEDW K +AIS SVE+G
Sbjct: 376 VHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQG 435
Query: 2288 VFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRV 2109
+F+KPYRT IYHRILSILRDG+ IG+KRF FLAFSASQLRSNSVWMFASN++V AE+IR
Sbjct: 436 IFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIRE 495
Query: 2108 WMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKI 1929
WMGCFNKIR+VSKCAARMGQLFS+S QT V + V I+PD+EVT+DG+SYCFSDGIGKI
Sbjct: 496 WMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKI 555
Query: 1928 SYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNV 1749
S +FA QVA KCGLS TPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKF+SKN+MLN+
Sbjct: 556 SQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNI 615
Query: 1748 TSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLE--GMG 1575
T WS+++PCYLNREIV LLSTLG+ED FE + + LL KMLT+ + AL+VLE G G
Sbjct: 616 TKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGGG 675
Query: 1574 DVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGT 1395
DVK I+++ML QGY P EPYL MML++H E QLSD+R++CR+F+ KGRVL+GCLDETG
Sbjct: 676 DVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGI 735
Query: 1394 LKYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYE 1215
L YGQVY R+TM +AELQ + Q+FF KNPCLHPGD+RVLEAVYE
Sbjct: 736 LNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEAVYE 795
Query: 1214 PILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRP 1035
LEEK VDC++FPQ+GERPHPNECSGGDLDGDL+FISWDENLIP T PMDY GRR
Sbjct: 796 VALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRT 855
Query: 1034 RIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVD 855
RIMDH+VTL+EIQ+FF+DYMI+DTLG ISTAHLVHADREPDKA +PKCLQLATLHSMAVD
Sbjct: 856 RIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVD 915
Query: 854 FAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEE 675
FAKTGA AEMPR LKP+E+PDF+ER D+PMY S GVLGKLYRA + + + D + S
Sbjct: 916 FAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNSDDLGSVR 975
Query: 674 VARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYL 495
+ AYDH L +G+EAF+ETA+ HK TY +++++L+NYYGAE E EILTGNLR +SVYL
Sbjct: 976 AIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYL 1035
Query: 494 QRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFN 315
QRD ++Y E+KDRILVS KSLQKEVK WF CKE E+ K+ASAWYHVTYHP+YC N
Sbjct: 1036 QRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPSYCEGSAN 1095
Query: 314 FLSFPWIVGDILLNVKAMKSRR 249
L FPW+VGDILL++K +R+
Sbjct: 1096 CLGFPWVVGDILLDIKLHNTRK 1117
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 1362 bits (3525), Expect = 0.0
Identities = 659/1041 (63%), Positives = 820/1041 (78%), Gaps = 2/1041 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L+F+ L + SF++II RP E + R +G+LH G LV+ D ++VLE+W+ VK IMPE
Sbjct: 78 LLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETWEDVKTLIMPE 137
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
RK EFWV+ E Y+LE+QFGDV+ C L + +A+LLKLK+APK+Y+++SGP +
Sbjct: 138 RKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQK-SALLLKLKHAPKLYQRVSGPAVA 196
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+ DRYHICKE+ EF+WVRTTD CW+ E+ L+SD+ ++ P +
Sbjct: 197 SKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLSSLPCCNKD 256
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
+ DL L S SE VPL++ PS+ KL YEILFQLNSLV +QKISL AVN DLIE+L
Sbjct: 257 VIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAVNPDLIEVL 316
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
S L +D+A MILQK+H+++STC+EP++F++++LH + N KN SSS RL ++M+ H
Sbjct: 317 SKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLVNHSMMSVH 376
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
RVL+TPSK+Y LGPE+ET+NY+VK++A +ASDFLRV+FVEEDW K +A+S SVE+G+F
Sbjct: 377 RVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIF 436
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
+KPYRT IYHRILSILR+GI IG KRF FLAFSASQLRSNSVWMFASN+ V AE+IR WM
Sbjct: 437 AKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWM 496
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCFNKIR++SKCAARMGQLFS+S+QT V Q V I+PD+EVT+DG+SYCFSDGIGKIS
Sbjct: 497 GCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFSDGIGKISQ 556
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
+FA+QVA KCGL+ TPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKF+SKN+MLN+T
Sbjct: 557 AFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITK 616
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GDV 1569
WS+++PCYLNREIV LLSTLG+ED E + +RLL KMLT+ + AL+VLE M GDV
Sbjct: 617 WSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVLESMGGGDV 676
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
K I+++MLLQGY P +EPYL MML++H E Q+SD+R++CR+F+PKGR+L+GCLDETG LK
Sbjct: 677 KKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILK 736
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YG+VYVR+TM +AELQ Q FF KNPCLHPGD+RVLEAVYE
Sbjct: 737 YGEVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVT 796
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK VDC++FPQ GERPHPNECSGGDLDGDL+FI WDE+LIP T PMDY GRRPRI
Sbjct: 797 LEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIPHQTVTPMDYTGRRPRI 856
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDH+VTLEEIQ+FF+DYMI+DTLG ISTAHLVHADREPDKA + KCLQLATLHSMAVDFA
Sbjct: 857 MDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFA 916
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGA AEMPR LKP+E+PDFMER D+PMY S GVLGKLYR I+ ++ D + ++
Sbjct: 917 KTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSDDLSTDRAI 976
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
+ AYDH+L V G+EAF+ETA+THK Y + +++L+NYYGAE E EILTGNLR +SVYLQR
Sbjct: 977 QDAYDHDLLVEGYEAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGNLRQKSVYLQR 1036
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFL 309
D ++Y E+KDRILVS KSL KEVK WF C E ++ K+ SAWYHVTYHP+YC + N L
Sbjct: 1037 DNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQKLVSAWYHVTYHPSYCHESANCL 1096
Query: 308 SFPWIVGDILLNVKAMKSRRS 246
FPW+VGDILLN+K+ +R++
Sbjct: 1097 GFPWVVGDILLNIKSHNTRKT 1117
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 1358 bits (3516), Expect = 0.0
Identities = 657/1041 (63%), Positives = 822/1041 (78%), Gaps = 2/1041 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L+F+ L + SF++II RP E + R G+LH G LVEKD ++VLE+W+ VK IMPE
Sbjct: 78 LLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETWEDVKTLIMPE 137
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
RK EFWV+ E Y+LE+QFGDV C + + +A+LLKLK+APK+Y+++SGP +
Sbjct: 138 RKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQK-SALLLKLKHAPKLYQRVSGPAVA 196
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+ DRYHICKE+ EF+W+RTTD CW+ E+ L+SD+ ++ P +
Sbjct: 197 SKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFSSLPCCNQD 256
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
+ DL L S SE VPL++ PS+ KL YEILFQLNSLV +QKISL A+N +LIE+L
Sbjct: 257 VIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAINPNLIEVL 316
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
S L +D+A MILQK+H+++S C++P+ F++++LH + N KN PSSS RL ++M+ H
Sbjct: 317 SKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRLVNHSMMSVH 376
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
RVL+TPSK+Y LGPE+ET+NY+VK++A++ASDFLRV+FVEEDW K +A+S SVE+G+F
Sbjct: 377 RVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIF 436
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
+KPYRT IYHRILSILR+GI IG KRF FLAFSASQLRSNSVWMFASN+ V AE+IR WM
Sbjct: 437 AKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWM 496
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCFNKIR++SKCAARMGQLFS+S+QT V Q V I+PD+EVT+DG+SYCFSDGIGKIS
Sbjct: 497 GCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFSDGIGKISQ 556
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
+FA+QVA KCGL+ TPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKF+SKN+MLN+T
Sbjct: 557 AFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITK 616
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GDV 1569
WS+++PCYLNREIV LLSTLG+ED FE + + LL KMLT+ + AL+VLE M G+V
Sbjct: 617 WSDAMPCYLNREIVILLSTLGVEDKAFEDLLDNHLCLLGKMLTTNEAALDVLESMGGGEV 676
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
K I+++MLLQGY P +EPYL MML++H E Q+SD+R++CR+F+PKGR+L+GCLDETG LK
Sbjct: 677 KKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILK 736
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVYVR+TM +AELQ Q FF KNPCLHPGD+RVLEAVYE
Sbjct: 737 YGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVT 796
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK VDC++FPQ+GERPHPNECSGGDLDGDL+FI WDE+LIP T PMDY GRRPRI
Sbjct: 797 LEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICWDESLIPCQTVTPMDYTGRRPRI 856
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDH+VTLEEIQ+FF+DYMI+DTLG ISTAHLVHADREPDKA + KCLQLATLHSMAVDFA
Sbjct: 857 MDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFA 916
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGA AEMPR LKP+E+PDFMER D+PMY S GVLGKLYR ++ ++ D + ++
Sbjct: 917 KTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVMKSYIRRNSDDLSADRAI 976
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
+ AYDH+L V G+EAF ETA+THK Y + +++L+NYYGAE E EILTGNLR +SVYLQR
Sbjct: 977 QDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNSLLNYYGAEKEVEILTGNLRQKSVYLQR 1036
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFL 309
D ++Y E+KDRILVS KSL KEVK WF S C+E ++ K+ASAWYHVTYHP+YC + N L
Sbjct: 1037 DNRRYFELKDRILVSAKSLHKEVKGWFTSCCQEDDHQKLASAWYHVTYHPSYCHESANCL 1096
Query: 308 SFPWIVGDILLNVKAMKSRRS 246
FPW+VGDILLN+K+ +R++
Sbjct: 1097 GFPWVVGDILLNMKSHNTRKT 1117
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 1344 bits (3478), Expect = 0.0
Identities = 651/1041 (62%), Positives = 814/1041 (78%), Gaps = 2/1041 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L F++ L + + ++II RP + ++R+ VLH GF+V + + VLESW+ V+A +MPE
Sbjct: 79 LFFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLESWEGVRAWVMPE 138
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
RK+ EFWV G+ YK+EI F +++ GC L G+ +NA+ LKLK+ PKI++++SGP +
Sbjct: 139 RKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPKIFRQLSGPNVA 198
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+ DRYH+CKE+F+++WVR TD FCW+++ A+ + TT+P + +
Sbjct: 199 SKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAGVFTTFPSFRKD 258
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
+ DL + G SE VPL+K ++ K YEILFQLN LVH+QKISLAAV +DLIE
Sbjct: 259 VVDLMFEDGGDCLLVSETVPLVKCEADMKFPYEILFQLNVLVHAQKISLAAVGSDLIEFF 318
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
LS+D+A+++L+KL ++K+TCY+P+SFV+ QL ++ N K S QR L E N+M+CH
Sbjct: 319 GGLSMDTANVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLSPHQR-LMEHNVMSCH 377
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
RVLITPSK+Y LGPE+E +NYVVK++A YASDF+RV+FVEEDW K P +A+S S+E+G F
Sbjct: 378 RVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALSTSIEQGFF 437
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
+KP+RTGIY RILSILRDGI IG KRFEFLAFSASQLRSNSVWMFASND+V AE+IR WM
Sbjct: 438 AKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAEDIRDWM 497
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCFNKIR+VSKCAARMGQLFSSS QT VP +DV +IPD+E TTDG+SYCFSDGIGKIS
Sbjct: 498 GCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISL 557
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
SFA+QVA KCGL+ TPSAFQIRYGGYKGVIAVDRNSFRKLSLR SMLKFDS N+MLNVT
Sbjct: 558 SFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRMLNVTK 617
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMG--DV 1569
WS S+PC+LNREI++L+STLG+ED+ FEA+Q EQ+ LL +M R+ AL+ LE + D
Sbjct: 618 WSSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADS 677
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
NI+VK+LLQGYEP EPYL MML+AH E+ L+D++++CR++VPKGR+L+GCLDETGTL
Sbjct: 678 NNILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLN 737
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVY+R+TM +AE ++ Q+FF KNPCLHPGDIRVLEAVY+
Sbjct: 738 YGQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVG 797
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEKN+VDC++FPQ+GERPHPNECSGGDLDGDLFFISWD++LIP T PMDY RRPR
Sbjct: 798 LEEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVPPMDYSARRPRN 857
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDHDVTLEEIQKFF+DYMIND LG ISTAHLVH+D EP+KA S KCL+LA LHSMAVDFA
Sbjct: 858 MDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLHSMAVDFA 917
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAE+ +LKPKE+PDFMER +RPMY S G LGKLYRA + VWS++ A
Sbjct: 918 KTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIVVWSQQRA 977
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
AYD ELEV GFE+FLE AE+H+ Y EK+ +LMNYY A E+EILTGNLRNR+ YLQR
Sbjct: 978 EEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTGNLRNRAAYLQR 1037
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFL 309
D ++Y ++KDRIL+S K+LQKE K WF SSCK E ++ASAWYHVTY+ Y ++ N L
Sbjct: 1038 DNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQRLASAWYHVTYNLAYFQEDMNCL 1097
Query: 308 SFPWIVGDILLNVKAMKSRRS 246
SFPWIVGDILLN+K++ SRRS
Sbjct: 1098 SFPWIVGDILLNIKSLNSRRS 1118
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 1343 bits (3477), Expect = 0.0
Identities = 650/1043 (62%), Positives = 817/1043 (78%), Gaps = 5/1043 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KL+F + L ++ S ++I+ RP NR+ G LH GF + D + V++SW+ VK +MP
Sbjct: 77 KLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEGVKGWVMP 136
Query: 3185 ERKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTL 3006
ER + +FWV + +KLEI F ++L C G G NA+LLKLKY P+IY+++ GP +
Sbjct: 137 ERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQRMEGPNV 196
Query: 3005 DAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEG 2826
AKF DRY CKE+F F+WVRTTD FCW++E S SD+ ++P Y
Sbjct: 197 SAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFRSFPLYRE 256
Query: 2825 ELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIEL 2646
LKDL+L+ GE+FCS +E VPL+K ++KL YE LFQLNSLVH+QKISLA+V+ +LI+L
Sbjct: 257 NLKDLSLEDGEEFCSPTETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLASVDDELIDL 316
Query: 2645 LSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTC 2466
++SL ++ +I QKLH++ STCYEP+ FV++QLH + +K+L SSQ+RLA+ N+M+C
Sbjct: 317 IASLDDETKAVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRLADNNIMSC 376
Query: 2465 HRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGV 2286
HR LITPSK+Y LGPE+ET+N+VVKH+A+YASDF+R++FVEEDWSK P +A+S S+++G+
Sbjct: 377 HRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAVSTSLQKGI 436
Query: 2285 FSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVW 2106
F+KP+RT IY R+L+ILRDGI IG+KRFEFLAFSASQLRSNSVW+FASND V AE+IR W
Sbjct: 437 FAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAEDIREW 496
Query: 2105 MGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKIS 1926
MG F IR+VSKCAARMGQLFSSS QTF + QDV IIPD+E+T+DGI+YCFSDGIGKIS
Sbjct: 497 MGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGIGKIS 556
Query: 1925 YSFAKQVAYKCGLSQT--PSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLN 1752
SFAKQ+A K L Q+ PSAFQIRYGGYKGVIAVDR+SFRKLS+R SMLKF+SKN+ML
Sbjct: 557 LSFAKQLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLKFESKNRMLC 616
Query: 1751 VTSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM-- 1578
VT WSES+PC+LNREI+SLLSTLG++D+ AMQ EQ++LL KMLT R+ AL+VLE +
Sbjct: 617 VTKWSESMPCFLNREIISLLSTLGVKDEALLAMQEEQLQLLGKMLTDREAALDVLESLSG 676
Query: 1577 GDVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETG 1398
D ++I+VKML YEP EPYL MML+AH YQLSD++++CR+FVPKGRVL+GCLDETG
Sbjct: 677 ADSRSILVKMLNGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRVLIGCLDETG 736
Query: 1397 TLKYGQVYVRVTMKRAELQLSDQTFFH-XXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAV 1221
L YGQV+VR+T+ + + ++ D+ + KNPCLHPGDIRVL+A+
Sbjct: 737 ILNYGQVFVRITVTKTKEKIGDENLQNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAI 796
Query: 1220 YEPILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGR 1041
Y LEEK L DCLVFPQ+G RPHPNECSGGDLDGDLFFISWD++LIP TD PMDY GR
Sbjct: 797 YNEELEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGR 856
Query: 1040 RPRIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMA 861
RPRIMDH VTLEEI +FF+DYMINDTLG ISTAHLVHADREP+KARS KCL+LA LHSMA
Sbjct: 857 RPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMA 916
Query: 860 VDFAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWS 681
VDFAKTGAPAEMPR LKP+E+PDFMER D+PMY S GVLGKLYRA + T + V S
Sbjct: 917 VDFAKTGAPAEMPRALKPREFPDFMERFDKPMYISNGVLGKLYRALVESTTQVRSNIVLS 976
Query: 680 EEVARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSV 501
E+ A AYDH+LEVNGFEAFLETA +HK Y +K+S+LM++Y AE E+E+LTGNL+NR+
Sbjct: 977 EKFAEEAYDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFYDAETEDEMLTGNLQNRAS 1036
Query: 500 YLQRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDG 321
YLQRD ++Y ++KDRIL+S K LQ+E K+WF S C+ HEY MASAWYHVTYHP Y +
Sbjct: 1037 YLQRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYQLMASAWYHVTYHPKYSHES 1096
Query: 320 FNFLSFPWIVGDILLNVKAMKSR 252
FLSFPWIVGDILL++K++ ++
Sbjct: 1097 STFLSFPWIVGDILLHIKSVNTK 1119
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 1343 bits (3476), Expect = 0.0
Identities = 651/963 (67%), Positives = 787/963 (81%), Gaps = 2/963 (0%)
Frame = -1
Query: 3134 LEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLDAKFNTDRYHICKENFE 2955
+EI F DVL GCRL G+ LNA+LLKLKY +IYKKISGP + +KF+ DRYH+CKE+F+
Sbjct: 1 MEISFEDVLETVGCRLGGDTLNAILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFD 60
Query: 2954 FIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGELKDLTLQHGEQFCSES 2775
FIWVRTTD FCW++E ASDI ++P+Y +++ L+ GE++ S S
Sbjct: 61 FIWVRTTDFSSVKSVGQSTSFCWEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSAS 120
Query: 2774 EIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELLSSLSVDSADMILQKLH 2595
EIVPL+K S+SKL YEILFQLNSLVH+QKISLAAV+T+LI L SL++D+A MILQKLH
Sbjct: 121 EIVPLVKCGSDSKLPYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLH 180
Query: 2594 RVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCHRVLITPSKVYFLGPEV 2415
++ TCY+P++F++ QLH N K SS + L N+M+CHR LITPSK+Y LGPE+
Sbjct: 181 KLAVTCYDPLAFIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPEL 240
Query: 2414 ETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVFSKPYRTGIYHRILSIL 2235
E++NYVVK++A+YASDF+RV+FVEEDWSK P++AIS S++RG+F+KP+RTGIYHRILSIL
Sbjct: 241 ESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHRILSIL 300
Query: 2234 RDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWMGCFNKIRNVSKCAARM 2055
RDGI IGAK+FEFLAFSASQLRSNSVWMFASND AEEIR WMGCFNKI ++SKCAARM
Sbjct: 301 RDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARM 360
Query: 2054 GQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISYSFAKQVAYKCGLSQTP 1875
GQLFSSS QTFIV QD+ IIPD+EVT+DGI+YCFSDGIGKIS SFA+QVA KCGL++TP
Sbjct: 361 GQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGLNRTP 420
Query: 1874 SAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTSWSESLPCYLNREIVSL 1695
SAFQIRYGGYKGVIAVDRNSFRKLSLR SM KF+S+N+MLNVT WSES+PCYLNREI++L
Sbjct: 421 SAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITL 480
Query: 1694 LSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GDVKNIIVKMLLQGYEPGK 1521
L+TLG++D+ FE +Q +Q++LL++MLT+R++ALNVLE + + KNI++KML+QGYEP
Sbjct: 481 LTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNV 540
Query: 1520 EPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLKYGQVYVRVTMKRAELQ 1341
EPYL MML+A+ E L ++R++CR+FVPKGR+L+GCLDET L YGQVYVR+TM +AELQ
Sbjct: 541 EPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQ 600
Query: 1340 LSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPILEEKNLVDCLVFPQQG 1161
+DQ FH KNPCLHPGDIRVLEAVYE LEEK LVDC++FPQ+G
Sbjct: 601 DADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKG 660
Query: 1160 ERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRIMDHDVTLEEIQKFFID 981
ERPHPNECSGGDLDGD FFISWD+ LIP T+ PMDY GRRPR MDHDVTLEEIQKFFID
Sbjct: 661 ERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFID 720
Query: 980 YMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFAKTGAPAEMPRVLKPKE 801
YMINDTLG ISTAHLVHADREPDKARS KCLQLA LHSMAVDFAKTGAPAEMP+ LKPKE
Sbjct: 721 YMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKE 780
Query: 800 YPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVARAAYDHELEVNGFEAF 621
+PDFMER D+ MY S GVLGKLYR T+ T Q FVW+E +A A YDH+LEV GFE F
Sbjct: 781 FPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEF 840
Query: 620 LETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQRDKKKYTEIKDRILVST 441
+E A +HK Y EKLS LM+YY A+ E+EILTGNL+N+++YLQRD ++Y + KDRIL+S
Sbjct: 841 VEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISV 900
Query: 440 KSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNFLSFPWIVGDILLNVKAM 261
KSLQKE K+WF S C+ E ++ASAWYHVTYHP+Y ++G LSFPWIV DILLN+K+
Sbjct: 901 KSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKSA 960
Query: 260 KSR 252
S+
Sbjct: 961 NSK 963
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1342 bits (3473), Expect = 0.0
Identities = 657/1036 (63%), Positives = 814/1036 (78%), Gaps = 3/1036 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L+F++ L++S ++++II RP +R+ GVLH GF+ DCL+VLE W+ V+ IMPE
Sbjct: 78 LLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEGVRGWIMPE 137
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
R++ EFWV GE YKL+ F D+ GC G NA+LL+++YAP+IY+K+SGP +
Sbjct: 138 RRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAPRIYQKVSGPNVA 197
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+TDRYHICKE F+F+WVRTTD F W+ SD+ST P Y +
Sbjct: 198 SKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPCYRED 257
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
++ +L+ +F S SEIVPL+KFPS+SKLAYEILFQLN+LVH+QKIS+AAV+TDLI +L
Sbjct: 258 IQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGIL 317
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
S L V++A MILQKL ++S CY P+SFV+++L + K + +P S RL N+M+C
Sbjct: 318 SGLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNYR--IPLSVSERLKNHNVMSCR 375
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
R LITP+K+Y LGPE+ETANYVVK++ YASDF+RV+FVEEDWSK ++AIS V GVF
Sbjct: 376 RALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAISTGVHLGVF 435
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
S+P++T IY RIL +L++GI IG KRFEFLAFSASQLRSNSVWMFASND V AE+IR WM
Sbjct: 436 SRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWM 495
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCF KIR++SKCA+RMGQLFSSS+ T +VP QDV II D+EV TDGI+YCFSDGIGKIS
Sbjct: 496 GCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISL 555
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
FA+QVA KCGL+ PSAFQIRYGGYKGV+AVDRNSF K+SLR SMLKF+SK +MLNVT
Sbjct: 556 PFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTK 615
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMGDV-- 1569
WSES+PC+LNREIV+L STLGI+D+ FE MQ EQ+ LL KMLT+R+ AL+ L+ +G V
Sbjct: 616 WSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNS 675
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
KNI+V+M LQ YEP +PYL MML+AH E LSD++++CR+FVPKGR+L+GCLDETGTL
Sbjct: 676 KNILVEM-LQFYEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLN 734
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVY+ + MK+AEL+ +DQ++F KNPCLHPGD+RVLEAVYEP
Sbjct: 735 YGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQ 794
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK LVDCLVFPQ+GERPHPNECSGGDLDGD FFISWD++LIP T+ PMDY GRRPRI
Sbjct: 795 LEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRI 854
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDH+VTLEEIQKFF+DYMINDTLG ISTAHLVHADREPDKA S CL LATLHSMAVDFA
Sbjct: 855 MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFA 914
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAEMPR LKP+E+PDFM+R ++PMYTS GVLGKLYRATI T FVW++E+A
Sbjct: 915 KTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMA 974
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
YDH+LEVNGFE+ + AETHK Y E++S LM+YY E E+EILTGN+ N++ +L R
Sbjct: 975 ELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLR 1034
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSC-KEHEYNKMASAWYHVTYHPNYCRDGFNF 312
D ++Y E+K+RI++S K LQ+E K+WF SSC K E+ K+ASAWY+VTYHPNY ++ N
Sbjct: 1035 DNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERMNS 1094
Query: 311 LSFPWIVGDILLNVKA 264
LSFPWIVGDILL VK+
Sbjct: 1095 LSFPWIVGDILLRVKS 1110
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1338 bits (3463), Expect = 0.0
Identities = 657/1036 (63%), Positives = 815/1036 (78%), Gaps = 3/1036 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L+F++ L++S ++++II RP +R+ GVLH GF+ DCL+VLE W+ V+ IMPE
Sbjct: 78 LLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEGVRGWIMPE 137
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTLD 3003
R++ EFWV GE YKL+ F D+ GC G NA+LL+++YAP+ Y+K+SGP +
Sbjct: 138 RRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAPRTYRKVSGPNVA 197
Query: 3002 AKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEGE 2823
+KF+TDRYHICKE F+F+WVRTTD F W+ SD+ST P Y +
Sbjct: 198 SKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPCYRED 257
Query: 2822 LKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIELL 2643
++ +L+ +F S SEIVPL+KFPS+SKLAYEILFQLN+LVH+QKIS+AAV+TDLI +L
Sbjct: 258 IQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGIL 317
Query: 2642 SSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTCH 2463
S L V++A MILQKL ++S CY P+SFV+++L + K + +P S RL N+M+CH
Sbjct: 318 SVLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNFR--IPLSVSERLKNHNVMSCH 375
Query: 2462 RVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGVF 2283
R LITP+K+Y LGPE+ETANYVVK++A YASDF+RV+FVEEDWSK ++AIS V GVF
Sbjct: 376 RALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSKLSANAISTGVHLGVF 435
Query: 2282 SKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVWM 2103
S+P++T IY RILSIL++GI IG KRF+FLAFSASQLRSNSVWMFASND V AE+IR WM
Sbjct: 436 SRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWM 495
Query: 2102 GCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKISY 1923
GCF KIR++SKCA+RMGQLFSSS+ T +VP QDV II D+EV TDGI+YCFSDGIGKIS
Sbjct: 496 GCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISL 555
Query: 1922 SFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVTS 1743
FA+QVA KCGL+ PSAFQIRYGGYKGV+AVDRNSF K+SLR SMLKF+SK +MLNVT
Sbjct: 556 PFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTK 615
Query: 1742 WSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGMGDV-- 1569
WSES+PC+LNREIV+L STLGI+D+ FE MQ EQ+ LL KMLT+R+ AL+ L+ +G V
Sbjct: 616 WSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNS 675
Query: 1568 KNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTLK 1389
KNI+V+M LQ EP +PYL MML+AH E LSD++++CR+FVPKGR+L+GCLDETGTL
Sbjct: 676 KNILVEM-LQFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLN 734
Query: 1388 YGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEPI 1209
YGQVY+ + MK+AEL+ +DQ++F KNPCLHPGD+RVLEAVYEP
Sbjct: 735 YGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQ 794
Query: 1208 LEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPRI 1029
LEEK LVDCLVFP++GERPHPNECSGGDLDGD FFISWD++LIP T+ PMDY GRRPRI
Sbjct: 795 LEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRI 854
Query: 1028 MDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDFA 849
MDH+VTLEEIQKFF+DYMINDTLG ISTAHLVHADREP KARS CL LATLHSMAVDFA
Sbjct: 855 MDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFA 914
Query: 848 KTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEVA 669
KTGAPAEMPR LKP+E+PDFM+R ++PMYTS GVLGKLYRATI T FVW++E+A
Sbjct: 915 KTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWTKEMA 974
Query: 668 RAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQR 489
AYDH+LEVNGFE+ + AETHK Y E++S LM+YY E E+EILTGN+ N++ +L R
Sbjct: 975 ELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLR 1034
Query: 488 DKKKYTEIKDRILVSTKSLQKEVKDWFHSSC-KEHEYNKMASAWYHVTYHPNYCRDGFNF 312
D ++Y E+K+RI++S K LQ+E K+WF SSC K E+ K+ASAWY+VTYHPNY + N
Sbjct: 1035 DNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMNS 1094
Query: 311 LSFPWIVGDILLNVKA 264
LSFPWIVGDILL +K+
Sbjct: 1095 LSFPWIVGDILLRIKS 1110
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 1321 bits (3419), Expect = 0.0
Identities = 644/1040 (61%), Positives = 810/1040 (77%), Gaps = 6/1040 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KL+ + L + S ++II RP +NR+ G L+ GF + DC+ VL+SW+ V+ +MP
Sbjct: 77 KLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEGVRGWVMP 136
Query: 3185 ERKKFEFWVAEGGESYKLEIQFGDVLACFG-CRLSGEDLNAVLLKLKYAPKIYKKISGPT 3009
ER++ +FWV G + +KLEI F ++L C G C G NA+LLKL+Y P+IY+K++GP
Sbjct: 137 ERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPN 196
Query: 3008 LDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYE 2829
+ AKF DRY CKENFEF+WVRTTD F W++ S SD+ ++P Y
Sbjct: 197 VAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYR 256
Query: 2828 GELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIE 2649
LKDL+L+ GE+FCS +E VPL+K +SKL YE LFQLNSLVH+QKISLA+VN +LI+
Sbjct: 257 ENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELID 316
Query: 2648 LLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMT 2469
LL+SL ++ +I QKLH++ STCYEP+ +VR+QLH + +K++ S Q+RL + N+M+
Sbjct: 317 LLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMS 376
Query: 2468 CHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERG 2289
CHR LITPSK+Y LGPE+ET+N+VVKH+AAYASDF+R++FVEEDWSK P++AIS ++++G
Sbjct: 377 CHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKG 436
Query: 2288 VFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRV 2109
+FS+P RT IY R+L+ILRDGI IG+KRFEFLAFSASQLRSNSVW+FASND V A +IR
Sbjct: 437 MFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIRE 496
Query: 2108 WMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKI 1929
WMG FN IR+VSKCAARMGQLFSSS QTF + QDV +IPD+E+T+DGI YCFSDGIGKI
Sbjct: 497 WMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKI 556
Query: 1928 SYSFAKQVAYKCGLSQT--PSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKML 1755
S SFA+Q+A K L + PSAFQIRYGGYKGVIAVDR+SF+KLSLR+SMLKF+SKN+ML
Sbjct: 557 SQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRML 616
Query: 1754 NVTSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM- 1578
VT WSES+PC+LNREI+SLLSTLGI+D+ A+Q +Q++LL KMLT ++ AL+VLE +
Sbjct: 617 CVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLN 676
Query: 1577 -GDVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDET 1401
D +I+VKML + YEP EPYL MML+AH YQLSD++++CR+FVPKGRVL+GCLDET
Sbjct: 677 GADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDET 736
Query: 1400 GTLKYGQVYVRVTMKRAELQLSDQTFFH-XXXXXXXXXXXXXXXXKNPCLHPGDIRVLEA 1224
G L YGQV+VR+T+ + + + D+ + KNPCLHPGDIRVL+A
Sbjct: 737 GLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDA 796
Query: 1223 VYEPILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIG 1044
VY LEEK L DCLVFPQ+G RPHPNECSGGDLDGDLFFISWD++LIP T+ PMDY G
Sbjct: 797 VYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTG 856
Query: 1043 RRPRIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSM 864
RRPRIMDH VTLEEI +FF+DYMINDTLG ISTAHLVHADRE DKA+S KCL+LA LHSM
Sbjct: 857 RRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSM 916
Query: 863 AVDFAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVW 684
AVDFAKTGAPAEMPR LKP+E+PDFMER ++PMY S GVLGKLYRATI D V
Sbjct: 917 AVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVM 976
Query: 683 SEEVARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRS 504
SE+ A+ AYDH+LEV+GFE FLETA +H+ Y +K+ +LM++YGA E+E+LTGNL+NR+
Sbjct: 977 SEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRA 1036
Query: 503 VYLQRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRD 324
YLQRD ++Y ++KDRIL+S K LQ E K+WF S C+ HEY MASAWYHVTYHP Y +
Sbjct: 1037 SYLQRDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHEYQLMASAWYHVTYHPKYYIE 1096
Query: 323 GFNFLSFPWIVGDILLNVKA 264
FLSFPWIVGDILL++K+
Sbjct: 1097 SSTFLSFPWIVGDILLHIKS 1116
Score = 158 bits (400), Expect = 1e-35
Identities = 80/117 (68%), Positives = 92/117 (78%)
Frame = -1
Query: 1031 IMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDF 852
I+ H + +I KFF+DYMI DTLG ISTAHLVHAD E +KA+S KCL+LA LHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169
Query: 851 AKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWS 681
AKTGA AEMPRVLKPKE+PDFMER ++PMY S GVLGKLYRA + T +FV S
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQLTSNFVSS 1226
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 1319 bits (3414), Expect = 0.0
Identities = 650/1040 (62%), Positives = 807/1040 (77%), Gaps = 6/1040 (0%)
Frame = -1
Query: 3362 LVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMPE 3183
L+F L +S + +II RP Q+R+ GVL+ GF++ + VLESW+ V ++P
Sbjct: 80 LLFHRHFLRLSETDADIIFRP---QHRLHNGVLYAGFVLSDHRMSVLESWEGVAGWVLPL 136
Query: 3182 RKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGED--LNAVLLKLKYAPKIYKKISGPT 3009
RK+ +FWV G+ Y+LE F D+L G L GED LNA+LLK+K+ P+IYKK +G
Sbjct: 137 RKRLDFWVWHNGDCYRLEFLFEDILESHGYCL-GEDAKLNALLLKMKFGPRIYKKKTGAD 195
Query: 3008 LDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYE 2829
+ AKF DRY CKE+FEF+WVRTTD FCW++ LA D+ ++P Y+
Sbjct: 196 VAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVFKSFPLYK 255
Query: 2828 GELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIE 2649
L+DL L+ GE+FCS +E VPL+K S+SKL YE LFQLNSLVH+QKISLA+V+ +LI+
Sbjct: 256 ENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELID 315
Query: 2648 LLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMT 2469
LL+ L ++ +I KLH++ TCYEP+ FV++QLH + +K LP SSQ+RL + N+M+
Sbjct: 316 LLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMS 375
Query: 2468 CHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERG 2289
CHR LITP+K+Y LGPE+ET+N+VVKH+A++ASDF+R++FVEE+W+K P++A+S V++G
Sbjct: 376 CHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKG 435
Query: 2288 VFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRV 2109
+FSKP +T IY RIL+ILRDGI IG+KRFEFLAFSASQLRSNSVW+FASNDN+ A +IR
Sbjct: 436 LFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIRE 495
Query: 2108 WMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKI 1929
WMGCFN IR+VSKCAARMGQLFSSS+QTF V +QDV IIPDVEV +DG+SYCFSDGIGKI
Sbjct: 496 WMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKI 555
Query: 1928 SYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNV 1749
S SFA+QVA K L TPSAFQIRYGG+KGVIAVDR SFRKLSLR SMLKF+SKN ML V
Sbjct: 556 SQSFARQVAQKLKLDHTPSAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCV 615
Query: 1748 TSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--G 1575
T WSES+PC+LNREI+SLLSTLG++D+ AMQH+Q+ LL +MLT AL VLE +
Sbjct: 616 TKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGA 675
Query: 1574 DVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGT 1395
D K+I+VKML + EP EPYL MML+A+ YQLSD++++CR+FVPKGRVL+GCLDETG
Sbjct: 676 DSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGL 735
Query: 1394 LKYGQVYVRVTMKRAELQLSDQTFFH-XXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVY 1218
L YGQV+VR+T+ + + D+ KNPCLHPGDIRVL+A+Y
Sbjct: 736 LNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIY 795
Query: 1217 EPILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRR 1038
LEEK L DCLVFPQ+G RPHPNECSGGDLDGDLFFISWD++LIP T+ PMDY GRR
Sbjct: 796 SEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRR 855
Query: 1037 PRIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAV 858
PRIMDH VTLEEIQ+FF+DYMINDTLG ISTAHLVHADRE DKA+S KCL+LA LHSMAV
Sbjct: 856 PRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAV 915
Query: 857 DFAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSE 678
DFAKTGAPA MPRVLKP+E+PDFMER D+PMY S GVLGKLYRA I FVWSE
Sbjct: 916 DFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSE 975
Query: 677 EVARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVY 498
+ A AYD LEVNGFEAFLETA THK Y EK+S+LM++YGAE E+E+L GNL+NR+ Y
Sbjct: 976 KHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASY 1035
Query: 497 LQRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPN-YCRDG 321
LQRD ++Y ++KDRIL+S K+LQ+E K+WF +SC+ HEY MASAWYHVTYHP+ YCR+
Sbjct: 1036 LQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHEYKPMASAWYHVTYHPSYYCRES 1095
Query: 320 FNFLSFPWIVGDILLNVKAM 261
FLSFPWIVG+ILL ++++
Sbjct: 1096 PCFLSFPWIVGEILLQIRSV 1115
>ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
gi|561028757|gb|ESW27397.1| hypothetical protein
PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 1319 bits (3413), Expect = 0.0
Identities = 642/1039 (61%), Positives = 805/1039 (77%), Gaps = 4/1039 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
+L+ + L +S + E+II RP +R+ GVL+ G ++ D + VLESW+ V ++P
Sbjct: 78 QLLIHSHFLRLSDTSEDIIFRPL---HRLQNGVLYAGLMLSDDRMSVLESWEGVAGLVVP 134
Query: 3185 ERKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGED-LNAVLLKLKYAPKIYKKISGPT 3009
+R+K +F V G+ Y++EI F D+L G L E LNA+LLKLK+ PKIYKK GP
Sbjct: 135 QRRKLDFLVLHDGDCYRVEIFFEDILESHGYCLGAEGKLNALLLKLKFGPKIYKKKMGPD 194
Query: 3008 LDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYE 2829
+ KF DRYH CKE+ EF+WVRTTD FCW++ LASD+ T+ P Y+
Sbjct: 195 VATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVFTSLPLYK 254
Query: 2828 GELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIE 2649
L+DL L+ GE+FCS +E VPL+K S+SKL YE LFQLNSLVH+QKISLA+V+ +LI+
Sbjct: 255 ENLRDLVLEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELID 314
Query: 2648 LLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMT 2469
LL L + +I QKLH++ TCY+P+ FV++QLH + +++ P SSQ+RL + N+M+
Sbjct: 315 LLGGLDEEIRAVIFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQKRLIDNNIMS 374
Query: 2468 CHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERG 2289
CHR L+TP+K+Y LGPE+ET+N+VVKH+A+ ASDF+R++FVEE+W+K P+ A+S V++G
Sbjct: 375 CHRALVTPTKIYCLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNYAVSTGVQKG 434
Query: 2288 VFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRV 2109
+FSKP++T IY RIL+ILRDGI IG+KRFEFLAFSASQLRSNSVW+FASNDNV A +IR
Sbjct: 435 IFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIRE 494
Query: 2108 WMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKI 1929
WMGCFN IR+VSKCAARMGQLFSSS+QTF V QDV +IPD+EVT+DG+SYCFSDGIGKI
Sbjct: 495 WMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCFSDGIGKI 554
Query: 1928 SYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNV 1749
S SF +QVA K L TPSAFQIR+GGYKGVI VDR+SFRKLSLR SMLKF+SKN+ML V
Sbjct: 555 SQSFGRQVAQKLKLDHTPSAFQIRFGGYKGVITVDRHSFRKLSLRNSMLKFESKNRMLCV 614
Query: 1748 TSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--G 1575
T WSES+PC+LNREI+SLLSTLG++D+ F A Q +Q+ LL +MLT AL+VLEG+
Sbjct: 615 TKWSESMPCFLNREIISLLSTLGVKDEAFLARQQDQLNLLGRMLTDSKAALDVLEGLNGA 674
Query: 1574 DVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGT 1395
D ++I+VKML + EP EPYL MML+A+ YQLSD++++ R+FVPKGRVL+GCLDETG
Sbjct: 675 DSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRSRIFVPKGRVLVGCLDETGL 734
Query: 1394 LKYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYE 1215
L YG+V+VRVT+KR + D KNPCLHPGD+RVL+A+Y
Sbjct: 735 LNYGEVFVRVTVKRTTEKFDDNLRKGGDDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYN 794
Query: 1214 PILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRP 1035
LEEK L DCLVFPQ G RPHPNECSGGDLDGDLFFISWD++LIP T+ PMDY GRRP
Sbjct: 795 EELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTEAPMDYTGRRP 854
Query: 1034 RIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVD 855
RIMDH VTLEEIQ FF+DYMINDTLG ISTAHLVHADREPDKA+S KCL+LA LHSMAVD
Sbjct: 855 RIMDHKVTLEEIQHFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVD 914
Query: 854 FAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEE 675
FAKTGAPA MPRVLKP+E+PDFMER ++PMY S GVLGKLYRA I FVWSE+
Sbjct: 915 FAKTGAPAAMPRVLKPREFPDFMERVEKPMYISKGVLGKLYRAIIESQMQIKYSFVWSEK 974
Query: 674 VARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYL 495
+A AYD LEVNGFEAFLETA +HK Y +K+S+LMN+YGAE E+E+L GNL+NR+ YL
Sbjct: 975 LAEEAYDRSLEVNGFEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYL 1034
Query: 494 QRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPN-YCRDGF 318
QRD ++Y ++KDRIL+S K+LQ+E K+WF +SC+ HEY MASAWYHVTYHP+ YC++
Sbjct: 1035 QRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQESS 1094
Query: 317 NFLSFPWIVGDILLNVKAM 261
FLSFPWIVG++LL +K++
Sbjct: 1095 CFLSFPWIVGEVLLQIKSV 1113
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 1291 bits (3342), Expect = 0.0
Identities = 631/1043 (60%), Positives = 801/1043 (76%), Gaps = 6/1043 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
+L+F L +S + +II RP Q+R+ GVL+ GF++ + VLESW+ + ++P
Sbjct: 78 QLLFNRHFLRLSETDSDIIFRP---QHRLQNGVLYAGFMLSDHRMSVLESWEGIAGWVLP 134
Query: 3185 ERKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGED--LNAVLLKLKYAPKIYKKISGP 3012
+RK+ +FWV G+ Y+LE F D+L G L GED LNA+LLK+K+ P+IYKK +G
Sbjct: 135 QRKRLDFWVWHNGDCYRLEFLFEDILESHGYCL-GEDARLNALLLKMKFGPRIYKKKTGT 193
Query: 3011 TLDAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHY 2832
+ A F DRY KE+FEF+WVRTTD FCW++ LASD+ T++P Y
Sbjct: 194 DVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLY 253
Query: 2831 EGELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLI 2652
+ L+DL L+ E+ CS +E VPL+K ++SKL YE +FQLNSLVH+QKISLA+V+ +LI
Sbjct: 254 KENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELI 313
Query: 2651 ELLSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLM 2472
+LL+ L ++ ++ QKLH++ TCYEP+ FV++QLH + +K L S Q RL + N+M
Sbjct: 314 DLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTDSNIM 373
Query: 2471 TCHRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVER 2292
+CHR LITP+K+Y LGPE+ET+N+VVKH+A+ ASDF+R++FVEE+W+K P++A+S V++
Sbjct: 374 SCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQK 433
Query: 2291 GVFSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIR 2112
G+FSKP +T IY RIL+ILRDGI IG+KRFEFLAFSASQLRSNSVW+FASNDN+ A +IR
Sbjct: 434 GIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIR 493
Query: 2111 VWMGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGK 1932
WMGCFN IR+VSKCAARMGQLFSSS+QTF V ++DV +IPD+EVT+DG+SYCFSDGIGK
Sbjct: 494 EWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGIGK 553
Query: 1931 ISYSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLN 1752
IS FA+QVA K L TPSAFQIRYGG+KGVIA+DR+SFRKLSLR SMLKF+S N+ML
Sbjct: 554 ISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKFESNNRMLC 613
Query: 1751 VTSWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM-- 1578
VT WSES+PC+LNREI+SLL+TLG++D+ AMQ +Q+ LL +MLT AL+VLE +
Sbjct: 614 VTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLESLNG 673
Query: 1577 GDVKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETG 1398
D K+I+VKML + EP EPYL MML+A+ YQLSD++++CR+FVPKGRVL+GCLDETG
Sbjct: 674 ADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETG 733
Query: 1397 TLKYGQVYVRVTMKRAELQLSDQTFFH-XXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAV 1221
L YGQV+VR+T+ + D+ KNPCLHPGDIRVL+A+
Sbjct: 734 LLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAI 793
Query: 1220 YEPILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGR 1041
Y LEE L DCLVFPQ+G RPHPNECSGGDLDGDLFF+SWD++LIP T+ PMDY GR
Sbjct: 794 YSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTEAPMDYTGR 853
Query: 1040 RPRIMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMA 861
RPRIMDH VTLEEIQ+FF+DYMINDTLG ISTAHLVHADRE DKA+S KCL+LA LHSMA
Sbjct: 854 RPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMA 913
Query: 860 VDFAKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWS 681
VDFAKTGAPA MPRVLKP+E+PDFMER D+PMY S GVLGKLY A I FVWS
Sbjct: 914 VDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQIRYSFVWS 973
Query: 680 EEVARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSV 501
E+ A AYD LEVNGFEAFLETA THK Y EK+S+LM++YGAE E+E+L GN++NR+
Sbjct: 974 EKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRAS 1033
Query: 500 YLQRDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYH-PNYCRD 324
YLQRD ++Y ++KDRIL+S K+LQ+E K+WF +SC+ EY MASAWYHVTYH +YC++
Sbjct: 1034 YLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTYHRSHYCQE 1093
Query: 323 GFNFLSFPWIVGDILLNVKAMKS 255
FLSFPWIVGDILL ++++ S
Sbjct: 1094 SPCFLSFPWIVGDILLQIRSVNS 1116
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 1248 bits (3230), Expect = 0.0
Identities = 615/1040 (59%), Positives = 774/1040 (74%), Gaps = 2/1040 (0%)
Frame = -1
Query: 3365 KLVFQNTLLEISPSFEEIIVRPTEVQNRVTEGVLHVGFLVEKDCLKVLESWKSVKAEIMP 3186
KLVFQ L ++ E+I+ RP V+NRV G L VG LV +D + V+ SW VKAE+MP
Sbjct: 72 KLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWNLVKAELMP 131
Query: 3185 ERKKFEFWVAEGGESYKLEIQFGDVLACFGCRLSGEDLNAVLLKLKYAPKIYKKISGPTL 3006
ERK+ +F+V+E GE +KLE +F D++ FGC++ G + +A+LL++KYAP+IY K+
Sbjct: 132 ERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIYCKVPS--- 188
Query: 3005 DAKFNTDRYHICKENFEFIWVRTTDXXXXXXXXXXXXFCWKVENRSLASDISTTYPHYEG 2826
+K DRYHICKE +EF WVRTTD FCW + + + I ++PH++
Sbjct: 189 SSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIKKSFPHHK- 247
Query: 2825 ELKDLTLQHGEQFCSESEIVPLIKFPSESKLAYEILFQLNSLVHSQKISLAAVNTDLIEL 2646
E++ L L G FCS S++VP+I + KLAYEILFQLN+LVH+ KIS + DL+++
Sbjct: 248 EIQTLYLDKGVSFCSSSDLVPIINTLPDCKLAYEILFQLNALVHAGKISGPTIGQDLLDI 307
Query: 2645 LSSLSVDSADMILQKLHRVKSTCYEPISFVRSQLHSMKTNQKNLPSSSQRRLAEQNLMTC 2466
L+ + + A + L KLH+ ++TCY+P+ ++ ++ + N+K L S S +L + NLM C
Sbjct: 308 LAG-NENVAKLALAKLHKSEATCYDPLQIIQRHINDITRNKKKLQSPSSSKLEDHNLMNC 366
Query: 2465 HRVLITPSKVYFLGPEVETANYVVKHYAAYASDFLRVSFVEEDWSKAPSDAISKSVERGV 2286
HR L+TPSKVYFLGPE+ET+NY+VKH+AAYA DFLRVSFV+EDWSK PSDA+S +E G
Sbjct: 367 HRALVTPSKVYFLGPELETSNYIVKHFAAYADDFLRVSFVDEDWSKLPSDALSPKLESGF 426
Query: 2285 FSKPYRTGIYHRILSILRDGITIGAKRFEFLAFSASQLRSNSVWMFASNDNVSAEEIRVW 2106
F+KPYRT IY RI+S+LRDGI +G+KRFEFLAFSASQLRSN+VWMFASN+N+S E IR W
Sbjct: 427 FAKPYRTNIYKRIVSVLRDGIVLGSKRFEFLAFSASQLRSNAVWMFASNENISVESIREW 486
Query: 2105 MGCFNKIRNVSKCAARMGQLFSSSLQTFIVPTQDVGIIPDVEVTTDGISYCFSDGIGKIS 1926
MG F +R ++KCAARMGQLFSSS T VP +V +IPD+EVTTDGI YCFSDGIGKIS
Sbjct: 487 MGEFKNLRCIAKCAARMGQLFSSSTPTLSVPLHEVQVIPDIEVTTDGIEYCFSDGIGKIS 546
Query: 1925 YSFAKQVAYKCGLSQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRQSMLKFDSKNKMLNVT 1746
+FA+QVA +CGL Q PSAFQIRYGGYKGVIA+D SF KL+LR SM KF+S N ML VT
Sbjct: 547 LAFARQVARRCGLKQPPSAFQIRYGGYKGVIAIDPTSFHKLALRPSMQKFNSNNTMLCVT 606
Query: 1745 SWSESLPCYLNREIVSLLSTLGIEDDKFEAMQHEQIRLLDKMLTSRDTALNVLEGM--GD 1572
WS+S+PCYLNREI++LLSTL I D KFEAMQ +Q+ LLD MLT RD ALNVLE M GD
Sbjct: 607 KWSQSMPCYLNREIITLLSTLEIADHKFEAMQKQQMTLLDDMLTKRDVALNVLEDMIVGD 666
Query: 1571 VKNIIVKMLLQGYEPGKEPYLLMMLRAHREYQLSDIRTKCRVFVPKGRVLMGCLDETGTL 1392
K ++ KMLL G +P EPYL MML+A R++QLSDIR+KCR+FV KGRVL+GCLDE+GTL
Sbjct: 667 YKEVLTKMLLHGCDPSTEPYLSMMLQALRDHQLSDIRSKCRLFVSKGRVLLGCLDESGTL 726
Query: 1391 KYGQVYVRVTMKRAELQLSDQTFFHXXXXXXXXXXXXXXXXKNPCLHPGDIRVLEAVYEP 1212
G+V++RVTM +AEL+ Q FF KNPCLHPGD+RVL+AV
Sbjct: 727 SQGEVFLRVTMTKAELENDGQPFFERIDETTSVVVGAVVVTKNPCLHPGDVRVLQAVSGL 786
Query: 1211 ILEEKNLVDCLVFPQQGERPHPNECSGGDLDGDLFFISWDENLIPLNTDMPMDYIGRRPR 1032
L ++ +VDCLVFPQ GERPHPNECSGGDLDGDLFF+ WD++LIP D MDY+GRRPR
Sbjct: 787 ELVDQGMVDCLVFPQNGERPHPNECSGGDLDGDLFFVCWDKDLIPTTNDPAMDYLGRRPR 846
Query: 1031 IMDHDVTLEEIQKFFIDYMINDTLGVISTAHLVHADREPDKARSPKCLQLATLHSMAVDF 852
IMDH+VT+EEIQ+FF+DYMIND LG IS AHLV ADRE KARSPKC++LA LHSMAVDF
Sbjct: 847 IMDHEVTMEEIQEFFVDYMINDNLGAISNAHLVLADREKSKARSPKCIELAKLHSMAVDF 906
Query: 851 AKTGAPAEMPRVLKPKEYPDFMEREDRPMYTSPGVLGKLYRATIRPTENQDLDFVWSEEV 672
AKTGAPAEMPR L KEYPDFMER ++ Y SPG+LGKLYR + +Q + V S+ V
Sbjct: 907 AKTGAPAEMPRSLMLKEYPDFMERGEKSTYASPGILGKLYRLAKEASNSQSFELVSSKNV 966
Query: 671 ARAAYDHELEVNGFEAFLETAETHKMTYTEKLSALMNYYGAECEEEILTGNLRNRSVYLQ 492
A YD L GFE F+E A HK Y +KL LM+YYGAE E EIL+GN+ +S YLQ
Sbjct: 967 ALPFYDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISKKSGYLQ 1026
Query: 491 RDKKKYTEIKDRILVSTKSLQKEVKDWFHSSCKEHEYNKMASAWYHVTYHPNYCRDGFNF 312
RD +KY E+KDRIL++ K+LQ+E + WF SSC+ ++ +K+ASAWYHVTY P++ NF
Sbjct: 1027 RDNRKYGEVKDRILIAVKNLQREAQGWFKSSCEPNQSSKLASAWYHVTYRPDHF-SKVNF 1085
Query: 311 LSFPWIVGDILLNVKAMKSR 252
SFPWI+ D+LLN+KA KS+
Sbjct: 1086 FSFPWILADVLLNIKAFKSQ 1105