BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00005462
         (3130 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1454   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1432   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1411   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1409   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1402   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1400   0.0  
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...  1398   0.0  
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...  1396   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1389   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1382   0.0  
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...  1381   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1375   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1362   0.0  
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...  1349   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1348   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1347   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1326   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1325   0.0  
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...  1321   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1309   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1454 bits (3764), Expect = 0.0
 Identities = 712/998 (71%), Positives = 825/998 (82%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L++E L  FC++ ++ FF+EYGLI HQI+S+N FI+NGIQ++FDS GEI VEPGYDPSK+
Sbjct: 41   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 100

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G+G+WRYA+V FGKVTLE P  W+ E    D KE L  +PRHARLQNMTYSSRMK ++  
Sbjct: 101  GEGDWRYASVRFGKVTLERPRVWAGES---DGKESLNFLPRHARLQNMTYSSRMKAQVHF 157

Query: 393  QVYTQKLMKSDKFKTGKE-QFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            QVYTQKL++SDK+KTGK+ ++V+K V  ED RD+LIGRIPVMV+S LCWMNG+++GDC++
Sbjct: 158  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 217

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYFLIKGAEKTFIAQEQICLKRLWVS  P W VAYR   KR+RVY+KL    +  + 
Sbjct: 218  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 277

Query: 750  QGLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
             G K+L V F S  IP+WILFF LG SSD+E++++ID N+DD  + NIL+A+I  AD   
Sbjct: 278  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 337

Query: 930  EG----FRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1097
            E     FR++G  + ++D L+   KFPPGE I++C+ KYLFP    +K KA FLGYMVKC
Sbjct: 338  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 397

Query: 1098 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRP 1277
            LL +YTGRRKC+NRDDFRNK              VHIRHAERRMVKAMQR+LYGDR+LRP
Sbjct: 398  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 457

Query: 1278 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1457
            IE+YLDASIITNGLSRAFSTG WSHPFKR ER +GVVATLRRTNPLQMTAD+RKTRQQV 
Sbjct: 458  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 517

Query: 1458 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1637
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVST +++PL+DKL  CGME
Sbjct: 518  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 577

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
             L DD S T L G++KVFL+G+WVG+C+  +SFV+ LR+KRR K++P +VEIKRD+QQGE
Sbjct: 578  KLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 636

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIFSDAGRILRPLLVVENLKK+  FKG  + FQS                 C TAWGIK
Sbjct: 637  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 696

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            YLL G  D P V YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTT
Sbjct: 697  YLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTT 755

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            NPNIRVDTLSHQLYYPQRPLFRTM+SD LG+P Y  GH  ++P+PEYFNGQ AIVAVNVH
Sbjct: 756  NPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVH 815

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNRASLERGMFR+EH+R+YK+EVDN E  + KR K++D V FGK+QSKIG
Sbjct: 816  LGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIG 874

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFPFIGANLQ+GDIVIGR AESG DHSIKLKHTERG VQKVV+SAND+G N+
Sbjct: 875  RVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNF 934

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVR+PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 935  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 994

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIAC G  R+ATPFST SVD I DQLHR
Sbjct: 995  GQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHR 1032


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1432 bits (3706), Expect = 0.0
 Identities = 707/998 (70%), Positives = 817/998 (81%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L++E L  FC++ ++ FF+EYGLI HQI+S+N FI+NGIQ++FDS GEI VEPGYDPSK+
Sbjct: 77   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 136

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G+G+WRYA+V FGKVTLE P  W+ E    D KE L  +PRHARLQNMTYSSRMK ++  
Sbjct: 137  GEGDWRYASVRFGKVTLERPRVWAGES---DGKESLNFLPRHARLQNMTYSSRMKAQVHF 193

Query: 393  QVYTQKLMKSDKFKTGKE-QFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            QVYTQKL++SDK+KTGK+ ++V+K V  ED RD+LIGRIPVMV+S LCWMNG+++GDC++
Sbjct: 194  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 253

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYFLIKGAEKTFIAQEQICLKRLWVS  P W VAYR   KR+RVY+KL    +  + 
Sbjct: 254  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 313

Query: 750  QGLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
             G K+L V F S  IP+WILFF LG SSD+E++++ID N+DD  + NIL+A+I  AD   
Sbjct: 314  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 373

Query: 930  EG----FRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1097
            E     FR++G  + ++D L+   KFPPGE I++C+ KYLFP    +K KA FLGYMVKC
Sbjct: 374  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 433

Query: 1098 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRP 1277
            LL +YTGRRKC+NRDDFRNK              VHIRHAERRMVKAMQR+LYGDR+LRP
Sbjct: 434  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 493

Query: 1278 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1457
            IE+YLDASIITNGLSRAFSTG WSHPFKR ER +GVVATLRRTNPLQMTAD+RKTRQQV 
Sbjct: 494  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 553

Query: 1458 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1637
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVST +++PL+DKL  CGME
Sbjct: 554  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 613

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
             L DD S T L G++KVFL+G+WVG+C+  +SFV+ LR+KRR K++P +VEIKRD+QQGE
Sbjct: 614  KLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 672

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIFSDAGRILRPLLVVENLKK+  FKG  + FQS                 C TAWGIK
Sbjct: 673  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 732

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            YLL G  D P V YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTT
Sbjct: 733  YLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTT 791

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            NPNIRVDTLSHQLYYPQRPLFRTM+SD              LP+PEYFNGQ AIVAVNVH
Sbjct: 792  NPNIRVDTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAIVAVNVH 837

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNRASLERGMFR+EH+R+YK+EVDN E  + KR K++D V FGK+QSKIG
Sbjct: 838  LGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIG 896

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFPFIGANLQ+GDIVIGR AESG DHSIKLKHTERG VQKVV+SAND+G N+
Sbjct: 897  RVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNF 956

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVR+PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 957  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 1016

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIAC G  R+ATPFST SVD I DQLHR
Sbjct: 1017 GQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHR 1054


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1411 bits (3653), Expect = 0.0
 Identities = 696/993 (70%), Positives = 806/993 (81%), Gaps = 2/993 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC++AS  FF +YGLISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 61   LGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDS-KEFLKLMPRHARLQNMTYSSRMKVEMS 389
            G G+W++A+V FGKVTLE P FW+ EK   D  KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETH 180

Query: 390  VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            VQVYT+KL++SDKFKTG +QFV K  E EDKRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 181  VQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 240

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYF++KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 241  DHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 300

Query: 750  QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 926
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 301  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 359

Query: 927  CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1106
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 360  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 419

Query: 1107 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1286
            S+ GRRK +NRDDFRNK               HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 420  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 479

Query: 1287 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1466
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 480  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 539

Query: 1467 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1646
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 1647 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1826
            DD   TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 600  DD-CATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1827 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLL 2006
            FSD+GRILRPLLVV NLKKI   KGG Y FQS                 C+TAWG++Y+L
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 2007 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 2186
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 2187 IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 2366
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 2367 NQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 2546
            NQEDSLVMNRASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 2547 SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 2726
            SLDDDGFPFIGANLQSGDI+IG+ AESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 2727 SLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 2906
            SLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 2907 LEAALGKGIACVGSTRYATPFSTPSVDVITDQL 3005
            LEAALGKGIA  G  +YATPFST SVD I +QL
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1050


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 695/993 (69%), Positives = 806/993 (81%), Gaps = 2/993 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC++AS  FF +YGLISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 61   LGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDS-KEFLKLMPRHARLQNMTYSSRMKVEMS 389
            G G+W++A+V FGKVTLE P FW+ EK   D  KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETH 180

Query: 390  VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            VQVYT+KL++SDKFKTG ++FV K  E EDKRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 181  VQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 240

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYF++KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 241  DHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 300

Query: 750  QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 926
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 301  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 359

Query: 927  CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1106
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 360  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 419

Query: 1107 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1286
            S+ GRRK +NRDDFRNK               HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 420  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 479

Query: 1287 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1466
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 480  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 539

Query: 1467 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1646
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 1647 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1826
            DD S TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 600  DDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1827 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLL 2006
            FSD GRILRPLLVV NLKKI   KGG Y FQS                 C+TAWG++Y+L
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 2007 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 2186
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 2187 IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 2366
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 2367 NQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 2546
            NQEDSLVMNRASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 2547 SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 2726
            SLDDDGFPFIGANLQSGDI+IG+ +ESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 2727 SLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 2906
            SLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 2907 LEAALGKGIACVGSTRYATPFSTPSVDVITDQL 3005
            LEAALGKGIA  G  +YATPFST SVD I +QL
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1050


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1402 bits (3629), Expect = 0.0
 Identities = 685/1000 (68%), Positives = 810/1000 (81%), Gaps = 7/1000 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L EE L  FCR+A++ FF+EYGL+SHQI+SYN FI+NG+QK FDS GE  VEPGYDPSKK
Sbjct: 42   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKK 101

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G+GEWRYA++ FG+VTL+ P+F++     +       + PRHARLQNMTYSSRMKV++  
Sbjct: 102  GEGEWRYASMRFGQVTLDKPSFFAGNGGDEHD-----MFPRHARLQNMTYSSRMKVKVQF 156

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 572
            QVYTQK + SDKFKTG+EQ++QK V S++  D++IGRIPVMV+S+LCWM G++KGDCDFD
Sbjct: 157  QVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCDFD 216

Query: 573  HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 752
            HGGYF+IKGAEK F+AQEQICLKRLWVS    W+VAY+SE KR R+ ++L+D+   E I+
Sbjct: 217  HGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 276

Query: 753  G-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
            G  K+L+V FLS  IP+WILFF LG+SSD+EI+ +ID   +D  ++NIL A+I  AD  C
Sbjct: 277  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 336

Query: 930  EGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLS 1109
            + FRK    LKY+D L+  T FPPGE  ++CM+ YLFP+LH  K KA FLGYMVKCLL +
Sbjct: 337  DEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 396

Query: 1110 YTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHY 1289
            Y+GRRKC+NRDDFRNK              VHI HA +RM KA+QRDLYGDR +RPIE+Y
Sbjct: 397  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 456

Query: 1290 LDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGK 1469
            LDASI+TNGLSRAFSTGAWSHPFKRTER +G+VA L R NPLQ   DLR+TRQQV YTGK
Sbjct: 457  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 516

Query: 1470 VGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLAD 1649
            VGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+  TGLVST+++EP+ ++L   GME LAD
Sbjct: 517  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLAD 576

Query: 1650 DPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIF 1829
            D S  SL G+ KVF++G+W+G+CK SLSFV  LR KRR K++P +VEIKRD+ Q EVRIF
Sbjct: 577  DASY-SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 635

Query: 1830 SDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLT 2009
             DAGRILRPLLVVEN+ KI   +G  Y FQ+                 C TAWGIKYLL 
Sbjct: 636  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 695

Query: 2010 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 2189
              +D+  + +THCELD+SFLLGLSCGIIPFANHDHARRVLYQS+KHS QAIGF TTNP+I
Sbjct: 696  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 755

Query: 2190 RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 2369
            RVDTLSHQL+YPQRPLFRTM+SD LG+P Y  GH  +LP+PE +NGQNAIVAVNVH GYN
Sbjct: 756  RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYN 813

Query: 2370 QEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 2549
            QEDSLVMNRASLERGMFR+EH+R+YKAEVDNKE+ + KR  + D V+FGKIQSKIGRVDS
Sbjct: 814  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM-QVKRRSSDDMVNFGKIQSKIGRVDS 872

Query: 2550 LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 2729
            LDDDGFPFIGANLQ GDIVIG+ A+SGADHSIKLKHTERG VQKVVLS+ND+G N++VVS
Sbjct: 873  LDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 932

Query: 2730 LRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 2909
            LRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 933  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 992

Query: 2910 EAALGKGIA------CVGSTRYATPFSTPSVDVITDQLHR 3011
            EAALGKGIA      C G  RYATPF+TPSVD IT+QLHR
Sbjct: 993  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1032


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1400 bits (3623), Expect = 0.0
 Identities = 692/993 (69%), Positives = 802/993 (80%), Gaps = 2/993 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC++AS  FF +YG ISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 55   LGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 114

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEK-PQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 389
            G G+W++A+V FGKVTLE P FW+ EK      KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 115  GDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETH 174

Query: 390  VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            VQVYT+KL++SDKFKTG ++FV K  E E KRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 175  VQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 234

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYF+ KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 235  DHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 294

Query: 750  QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 926
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 295  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 353

Query: 927  CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1106
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 354  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 413

Query: 1107 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1286
            S+ GRRK +NRDDFRNK               HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 414  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 473

Query: 1287 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1466
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 474  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 533

Query: 1467 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1646
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 534  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 593

Query: 1647 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1826
            DD S TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 594  DDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 652

Query: 1827 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLL 2006
            FSD GRILRPLLVV NLKKI   KGG Y FQS                 C+TAWG++Y+L
Sbjct: 653  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 712

Query: 2007 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 2186
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 713  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 772

Query: 2187 IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 2366
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 773  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 832

Query: 2367 NQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 2546
            NQEDSLVMNRASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 833  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 891

Query: 2547 SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 2726
            SLDDDGFPFIGANLQSGDI+IG+ +ESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 892  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 951

Query: 2727 SLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 2906
            SLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 952  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1011

Query: 2907 LEAALGKGIACVGSTRYATPFSTPSVDVITDQL 3005
            LEAALGKGIA  G  +YATPFST SVD I +QL
Sbjct: 1012 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQL 1044


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1398 bits (3618), Expect = 0.0
 Identities = 686/1007 (68%), Positives = 803/1007 (79%), Gaps = 9/1007 (0%)
 Frame = +3

Query: 18   NDDTC--------LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLG 173
            +DD C        L EE L  FC+QA++ FF EYGLISHQ++SYN+FI+ G+Q  FDS G
Sbjct: 19   DDDVCDEVLSVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFG 78

Query: 174  EITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQN 353
            E  +  GYDPSKKG+G+WR+A V FGKVT+E PTFW+     +     L ++PRHARLQN
Sbjct: 79   EFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWAVSGGNE-----LNMLPRHARLQN 133

Query: 354  MTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLC 533
            MTYSSRMKV + +QVYT K +KSDKFKTG+E+FV++ V  +D RD++IGRIPVMVRS+LC
Sbjct: 134  MTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLC 193

Query: 534  WMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVY 713
            WMN ++K DCDFDHGGYFLIKG EK FIAQEQI +KRLW+S    W++AYRSE+KR R+ 
Sbjct: 194  WMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLI 253

Query: 714  LKLIDLPNNESIQG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVN 890
            ++L++    E I+G  K+L V FLS  IP+W+LFF LG+SSD+E++ +ID   +D  + N
Sbjct: 254  IRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITN 313

Query: 891  ILIATIKYADENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKA 1070
            IL A+I+ AD  C  F +    + Y+  L+  T+FPP E I++C+  YLFPTL   K KA
Sbjct: 314  ILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKA 373

Query: 1071 LFLGYMVKCLLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRD 1250
             FLGYMVKCLL +YTGR KC+NRDDFRNK              VHI HA RRM K +QRD
Sbjct: 374  RFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRD 433

Query: 1251 LYGDRNLRPIEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTAD 1430
            LY DR +RPIEHYLDASI+TNGLSRAFSTGAWSHP+KR ER +GVVA L R NPLQ   D
Sbjct: 434  LYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVD 493

Query: 1431 LRKTRQQVAYTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLL 1610
            LRKTRQQV YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVSTN++E ++
Sbjct: 494  LRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIV 553

Query: 1611 DKLLGCGMENLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVE 1790
            DKL   GME L +D + +SL G+DKVFLNGEWVG+C+ SLSF   +R KRRSK+ P +VE
Sbjct: 554  DKLFDSGMEELVND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVE 612

Query: 1791 IKRDQQQGEVRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXX 1970
            IKRD+ +GEVRIFSD GRILRPLLVV+NL +I  FKG  Y FQ+                
Sbjct: 613  IKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEE 672

Query: 1971 XCKTAWGIKYLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHS 2150
             C+TAW IKYLLT  + +  V YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++KHS
Sbjct: 673  DCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHS 732

Query: 2151 QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQ 2330
            QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM SD LG+  +P G   VLPKPE +NGQ
Sbjct: 733  QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQ 792

Query: 2331 NAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVD 2510
            NAIVAVNVH GYNQEDSLVMNR+SLERGMFR+EHVR+YKAEVDNKE+ + KR K++D V+
Sbjct: 793  NAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEI-QDKRRKSEDIVN 851

Query: 2511 FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVL 2690
            FGKIQSKIGRVDSLDDDGFP++GANLQ GDIVIGR AESGADHSIKLKHTERG VQKVVL
Sbjct: 852  FGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVL 911

Query: 2691 SANDEGTNYAVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINP 2870
            S+ND+G NYAVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINP
Sbjct: 912  SSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINP 971

Query: 2871 HAFPTRQTPGQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            HAFP+RQTPGQLLEAALGKGIAC GS +YATPFST SVD IT+QLHR
Sbjct: 972  HAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLHR 1018


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score = 1396 bits (3613), Expect = 0.0
 Identities = 685/1006 (68%), Positives = 802/1006 (79%), Gaps = 9/1006 (0%)
 Frame = +3

Query: 18   NDDTC--------LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLG 173
            +DD C        L EE L  FC+QA++ FF EYGLISHQ++SYN+FI+ G+Q  FDS G
Sbjct: 19   DDDVCDEVLSVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFG 78

Query: 174  EITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQN 353
            E  +  GYDPSKKG+G+WR+A V FGKVT+E PTFW+     +     L ++PRHARLQN
Sbjct: 79   EFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWAVSGGNE-----LNMLPRHARLQN 133

Query: 354  MTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLC 533
            MTYSSRMKV + +QVYT K +KSDKFKTG+E+FV++ V  +D RD++IGRIPVMVRS+LC
Sbjct: 134  MTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLC 193

Query: 534  WMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVY 713
            WMN ++K DCDFDHGGYFLIKG EK FIAQEQI +KRLW+S    W++AYRSE+KR R+ 
Sbjct: 194  WMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLI 253

Query: 714  LKLIDLPNNESIQG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVN 890
            ++L++    E I+G  K+L V FLS  IP+W+LFF LG+SSD+E++ +ID   +D  + N
Sbjct: 254  IRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITN 313

Query: 891  ILIATIKYADENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKA 1070
            IL A+I+ AD  C  F +    + Y+  L+  T+FPP E I++C+  YLFPTL   K KA
Sbjct: 314  ILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKA 373

Query: 1071 LFLGYMVKCLLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRD 1250
             FLGYMVKCLL +YTGR KC+NRDDFRNK              VHI HA RRM K +QRD
Sbjct: 374  RFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRD 433

Query: 1251 LYGDRNLRPIEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTAD 1430
            LY DR +RPIEHYLDASI+TNGLSRAFSTGAWSHP+KR ER +GVVA L R NPLQ   D
Sbjct: 434  LYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVD 493

Query: 1431 LRKTRQQVAYTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLL 1610
            LRKTRQQV YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVSTN++E ++
Sbjct: 494  LRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIV 553

Query: 1611 DKLLGCGMENLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVE 1790
            DKL   GME L +D + +SL G+DKVFLNGEWVG+C+ SLSF   +R KRRSK+ P +VE
Sbjct: 554  DKLFDSGMEELVND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVE 612

Query: 1791 IKRDQQQGEVRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXX 1970
            IKRD+ +GEVRIFSD GRILRPLLVV+NL +I  FKG  Y FQ+                
Sbjct: 613  IKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEE 672

Query: 1971 XCKTAWGIKYLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHS 2150
             C+TAW IKYLLT  + +  V YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++KHS
Sbjct: 673  DCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHS 732

Query: 2151 QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQ 2330
            QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM SD LG+  +P G   VLPKPE +NGQ
Sbjct: 733  QQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQ 792

Query: 2331 NAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVD 2510
            NAIVAVNVH GYNQEDSLVMNR+SLERGMFR+EHVR+YKAEVDNKE+ + KR K++D V+
Sbjct: 793  NAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEI-QDKRRKSEDIVN 851

Query: 2511 FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVL 2690
            FGKIQSKIGRVDSLDDDGFP++GANLQ GDIVIGR AESGADHSIKLKHTERG VQKVVL
Sbjct: 852  FGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVL 911

Query: 2691 SANDEGTNYAVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINP 2870
            S+ND+G NYAVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINP
Sbjct: 912  SSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINP 971

Query: 2871 HAFPTRQTPGQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLH 3008
            HAFP+RQTPGQLLEAALGKGIAC GS +YATPFST SVD IT+QLH
Sbjct: 972  HAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLH 1017


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1389 bits (3595), Expect = 0.0
 Identities = 688/993 (69%), Positives = 801/993 (80%), Gaps = 6/993 (0%)
 Frame = +3

Query: 48   LTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEW 227
            L  FC++AS  FF +YG+ISHQI SYN FI  GIQ++FDS+GEI VEPGYDPSKKG+GEW
Sbjct: 64   LRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEW 123

Query: 228  RYAAVTFGKVTLEPPTFWSTEK-PQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYT 404
            ++A+V FGKVTL+ P FW+ EK    + +E+L L PRHARLQNMTYS+R+ VE  VQV+T
Sbjct: 124  KHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 405  QKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGY 584
            +KL++SDKFKTG EQFV K    EDKRDV IGRIPVMV S LCWM+G  + DCDFDHGGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGY 243

Query: 585  FLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQG-LK 761
            F++KGAEK FIAQEQICLKRLWVS    W VAYRS  KR RVYLKL +   +E I+G  K
Sbjct: 244  FIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAK 303

Query: 762  ILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFR 941
             L+V FL+  +P+W+LFF LG+SSDREI+++IDV++ D  ++NIL+A+I  AD+NCE FR
Sbjct: 304  ALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFR 362

Query: 942  KEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGR 1121
            K  K L Y+D L+   KFPP E +++C+ +YLFP L  LK KA FLGYMVKCLLLSY GR
Sbjct: 363  KGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 1122 RKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDAS 1301
            RK +NRDDFRNK               HI+HAERRMVKA+QRDL GDR ++P+EHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDAS 482

Query: 1302 IITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDA 1481
            IITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTADLRKTRQQV YTGKVGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1482 RFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSL 1661
            R+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLVST +++PLL+ L  CGM+ L DD S 
Sbjct: 543  RYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDD-SA 601

Query: 1662 TSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAG 1841
            TSL G+ KV L+G+WVG+C+ S  FV  LR KRR  ++P +VE+KRD+QQ EVRIFSDAG
Sbjct: 602  TSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAG 661

Query: 1842 RILRPLLVVENLKKINM----FKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLT 2009
            RI+RPLLVV NLK I       KGG Y FQ+                 C+TAWG++YLL 
Sbjct: 662  RIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLK 721

Query: 2010 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 2189
             DK+ P V+YTHCELD+SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIGFST NPN 
Sbjct: 722  ADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNA 781

Query: 2190 RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 2369
            RVDT +HQLYYPQRPLF TMLSD+LG+P+  R    +L +PEY+NGQ AIVAVNVH GYN
Sbjct: 782  RVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGYN 841

Query: 2370 QEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 2549
            QEDS+VMNRASLERGMFR+EHVR+YKAEVDNKE    K+ K +D V+FGK QSKIGRVDS
Sbjct: 842  QEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAM-GKKSKVEDSVNFGKTQSKIGRVDS 900

Query: 2550 LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 2729
            LDDDGFPFIGANLQSGDI+IG+ AESGADHS+K+KHTERG VQKV+LSAND+G N+AVVS
Sbjct: 901  LDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVS 960

Query: 2730 LRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 2909
            LRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 2910 EAALGKGIACVGSTRYATPFSTPSVDVITDQLH 3008
            EAALGKGIA  G  +YATPFS  SVD I  QLH
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLH 1053


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1382 bits (3576), Expect = 0.0
 Identities = 687/996 (68%), Positives = 796/996 (79%), Gaps = 1/996 (0%)
 Frame = +3

Query: 27   TCLSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPS 206
            T + E  L  FC +A+  FF+EYGLISHQI+SYN FI NGIQK FDS GE+ VEPGYDPS
Sbjct: 52   TDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPS 111

Query: 207  KKGQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEM 386
            KKG+ EWRYA+V FGKV LE PTFWS     K       ++PRHARLQNMTYSS+MKV +
Sbjct: 112  KKGENEWRYASVKFGKVALEKPTFWSGADEHK-------MLPRHARLQNMTYSSKMKVNV 164

Query: 387  SVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCD 566
            SV+VYT+K+++SDKFKTGK+Q+V K V + D R++ IG +PVMV+S+LCWM   +KGDCD
Sbjct: 165  SVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCD 224

Query: 567  FDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNES 746
            FDHGGYFLIKGAEK FIAQEQICLKRLW+S    W+V+Y+SE+KR R+ ++L+ L   E 
Sbjct: 225  FDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALED 284

Query: 747  IQG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADE 923
            ++   K L V FLS  IPLWILFF LG++SD+E+I++I    +D  +VNI  A+I  ADE
Sbjct: 285  VKAEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADE 344

Query: 924  NCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLL 1103
              EGFR+  + L+Y+   +  T+FPPGE  +D    YLFPTLH L+ KA FLGYMVKCLL
Sbjct: 345  KTEGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLL 403

Query: 1104 LSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIE 1283
             +Y G+RKC N D FRNK              VHI HA RRM KA+Q+DLYGDR++RPIE
Sbjct: 404  QAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIE 463

Query: 1284 HYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYT 1463
            HYLDASI+TNGLSRAFSTGAWSHP+KR ER +GVVA L R NPLQ   DLRKTR  V YT
Sbjct: 464  HYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYT 523

Query: 1464 GKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENL 1643
            GKVGDARFP+PSHWG++CFLSTPDGENCGLVKN+A TGLVS N++EPL+DKL+  GME +
Sbjct: 524  GKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKV 583

Query: 1644 ADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVR 1823
             +D S + L  +DKVFLNGEWVG+C+ S  FV  LR  RR K++P +VEIKRD+QQ EVR
Sbjct: 584  PED-SHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVR 642

Query: 1824 IFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYL 2003
            IFSDAGRILRPLLVV+NL KI  FKGG   FQS                 C TAWGIK+L
Sbjct: 643  IFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFL 702

Query: 2004 LTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNP 2183
            L+G   + S+ YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++KHSQQAIGF TTNP
Sbjct: 703  LSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNP 762

Query: 2184 NIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQG 2363
            NIRVDTLSHQLYYPQRPLFRT+ SD LG+P   RGH  ++PKPE +NGQNAIVAVNVH G
Sbjct: 763  NIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLG 822

Query: 2364 YNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRV 2543
            YNQEDSLVMNRASLERGMFR+EH+R+YKA+VDNKEL + KR K  D V+FGKI SKIGRV
Sbjct: 823  YNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRV 881

Query: 2544 DSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAV 2723
            DSLDDDGFPFIGANLQSGDIVIGR AESG DHSIKLKHTERG VQKVVLS+NDEG N+AV
Sbjct: 882  DSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 941

Query: 2724 VSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQ 2903
            VSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFTR+GIVPDIVINPH+FP+RQTPGQ
Sbjct: 942  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQ 1001

Query: 2904 LLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            LLEAALGKGIAC GS +YATPFST SV+ IT+QLHR
Sbjct: 1002 LLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHR 1037


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1381 bits (3574), Expect = 0.0
 Identities = 678/997 (68%), Positives = 808/997 (81%), Gaps = 5/997 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC++A++ FF+EYGLISHQI+SYN FI+NGIQ++FDS GEI VEPGYDPSKK
Sbjct: 46   LGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSKK 105

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G+ EWRYA+V FGKVTL  P+FW       D KE+ K++PRHARLQNM+Y+S+MKV ++V
Sbjct: 106  GESEWRYASVKFGKVTLGMPSFWGGSD---DEKEY-KMLPRHARLQNMSYASKMKVNITV 161

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 572
            +VYTQKL+ SDKFKTGK Q++ K + S D RD++IG +PVMV+S+LCWM   +KGDCDFD
Sbjct: 162  EVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCDFD 221

Query: 573  HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 752
            HGGYF+IKGAEKTFIAQEQ CLKRL ++     +VAYRSE+KR R+ ++L+ +   E+I+
Sbjct: 222  HGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIE 281

Query: 753  GL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
            G+ K+L V F+S  IP+WI FF LG+SSDRE++ +ID + +D  + NIL A+I+ AD+  
Sbjct: 282  GVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADKLN 341

Query: 930  E----GFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1097
            +    GFR+    LKY+D+++ +T FPPGE +++C+  YLFP L  LK KA FLGYMVK 
Sbjct: 342  DKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKS 401

Query: 1098 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRP 1277
            LL +Y GRRKC+NRDDFRNK               HI HA RRM KA+QRDLYGDR +RP
Sbjct: 402  LLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRAVRP 461

Query: 1278 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1457
            IEHYLDASI+TNG+SRAFSTGAW HPFKR ER +GVVAT+ R NPLQ   D+RKTRQQV 
Sbjct: 462  IEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQVQ 521

Query: 1458 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1637
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVSTN++E L+ +LL CGME
Sbjct: 522  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCGME 581

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
             L DD + TSL+G+DKVFLNG+WVG+C+ SLSFV+ LR  RR K++P +VEIKRD  QGE
Sbjct: 582  KLVDD-TFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGE 640

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIFSDAGRILRPLLVVENL K+   KGG   FQ                  C TAWGIK
Sbjct: 641  VRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIK 700

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            YL   DK + +  +THCELD+SFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTT
Sbjct: 701  YLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTT 760

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            NPN+RVDTLSHQL+YPQRPLF+TM SD LG+   P  H  ++PKPEY+NGQNAIVAVNVH
Sbjct: 761  NPNLRVDTLSHQLHYPQRPLFQTMTSDCLGK---PGRHNRIVPKPEYYNGQNAIVAVNVH 817

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             G+NQEDS+VMNRASLERGMFR+EH+R+YKAEVDNKE  + KR K  D V+FGK+QSK G
Sbjct: 818  LGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLD-KRRKPDDCVNFGKMQSKFG 876

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFP++GANLQSGDI+IGR +ESGADHSIKLKHTERG VQKV+LS+ND+G N+
Sbjct: 877  RVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNF 936

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +G+VPDIVINPHAFP+RQTP
Sbjct: 937  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTP 996

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLH 3008
            GQLLEAALGKGIAC GS RYATPFST SVD ITDQLH
Sbjct: 997  GQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLH 1033


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1375 bits (3559), Expect = 0.0
 Identities = 682/993 (68%), Positives = 795/993 (80%), Gaps = 6/993 (0%)
 Frame = +3

Query: 48   LTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEW 227
            L  FC++AS  FF +YGLISHQI SYN FI  GIQK+FDS+GEI VEPGYDPSKKG+GEW
Sbjct: 64   LRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEW 123

Query: 228  RYAAVTFGKVTLEPPTFWSTEKPQK-DSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYT 404
            ++A+V FG V L+ P FW+ EK    + +E+L + PRHARLQNMTYS+R+ VE  VQV+T
Sbjct: 124  KHASVKFGNVILDRPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 405  QKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGY 584
            +KL++SDKFKTG EQFV K    EDKRDV IGRIPVMV S LCWM+G  + DC+FDHGGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGY 243

Query: 585  FLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQG-LK 761
            F++KGAEK FIAQEQ+CLKRLWVS    W VAYRS  KR RVYLKL +   +E I+G  K
Sbjct: 244  FIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAK 303

Query: 762  ILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFR 941
             L+V FL+  +P+W+LFF LG+SSDRE++++IDV++ D  ++NIL+A+I  AD+NCE FR
Sbjct: 304  SLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFR 362

Query: 942  KEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGR 1121
            K  + L Y+D L+   KFPP E +++C+ +YLFP L  LK KA FLGYMVKCLLLSY GR
Sbjct: 363  KGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 1122 RKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDAS 1301
            RK +NRDDFRNK              VHI+HAERRMVKA+QRDL GDR + PIEHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDAS 482

Query: 1302 IITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDA 1481
            IITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTADLRKTRQQV YTGKVGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1482 RFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSL 1661
            R+PNPSHWGK+CFLSTPDGENCGLVKN+A+ GLVST ++ PLL+ L  CGM+ L DD   
Sbjct: 543  RYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQKLVDD-CA 601

Query: 1662 TSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAG 1841
            TSL G+ KV L+G+WVG+C+ S  FV  LR KRR  ++P +VE+KRD+QQ EVRIFSDAG
Sbjct: 602  TSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAG 661

Query: 1842 RILRPLLVVENLKKINMF----KGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLT 2009
            RI+RPLLVV NLK I       KGG Y FQ+                 C+TAWG++YLL 
Sbjct: 662  RIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLK 721

Query: 2010 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 2189
             DK+ P V+YTHCELD+SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIGFST NPNI
Sbjct: 722  ADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNI 781

Query: 2190 RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 2369
            RVDT +HQLYYPQRPLF TMLSD+LG+P+  R    +L +PEY+NGQ AIVAVNVH GYN
Sbjct: 782  RVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGYN 841

Query: 2370 QEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 2549
            QEDS+VMNRASLERGMFR+EHVR+YKAEVDN E    K+ K +D V+FGK QSKIGRVD 
Sbjct: 842  QEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEA-TGKKSKAEDSVNFGKTQSKIGRVDC 900

Query: 2550 LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 2729
            LDDDG P+IGANLQSGDI+IG+ AESGADHS+K+KHTE+G VQKV+LSANDEG N+AVVS
Sbjct: 901  LDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVS 960

Query: 2730 LRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 2909
            LRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 2910 EAALGKGIACVGSTRYATPFSTPSVDVITDQLH 3008
            EAALGKGIA  G  +YATPFS  SVD I  QLH
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLH 1053


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1362 bits (3525), Expect = 0.0
 Identities = 677/996 (67%), Positives = 794/996 (79%), Gaps = 1/996 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L +E L  FC++A+  FF EYGLISHQI+SYN+FI +G+Q++FDS GE+ VEPGYD SK+
Sbjct: 39   LGKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQ 98

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
              GEWR A+V FGKVTL+ P+FW       +   F    PRHARLQNMTYS+RMK+ ++V
Sbjct: 99   KDGEWRRASVRFGKVTLDRPSFWGGTSSDAEHNMF----PRHARLQNMTYSARMKIHVNV 154

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 572
            QVYTQ + +SDKFKTG ++ VQK+V   + R+++IGRIPVMV+S+LCW+  ++KGDCDFD
Sbjct: 155  QVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFD 214

Query: 573  HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 752
            HGGYFLIKGAEK FIAQEQIC+KRLW+S    W+V+Y+SE+KR R+ ++L++L   E I+
Sbjct: 215  HGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIK 274

Query: 753  GLKI-LNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
            G K  L V FLS  IPLWILFF LG+ SD+E+I++ID   +D  +VNI  A+I  ADE C
Sbjct: 275  GEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKC 334

Query: 930  EGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLS 1109
            E FR+E + L Y+D L+ +T+FPP E I+D +  YLFP L+  + KA FLGYMVKCLL +
Sbjct: 335  EHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEA 394

Query: 1110 YTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHY 1289
            YTG RKC+NRD FRNK              VH+ HA RRM KA+QRDLYGDR++ PIEHY
Sbjct: 395  YTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHY 454

Query: 1290 LDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGK 1469
            LDASI+TNGL+RAFSTGAW HPFK  ER +GVV  L R NPLQ   DLRKTRQQV YTGK
Sbjct: 455  LDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGK 514

Query: 1470 VGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLAD 1649
            VGDAR+P+PSHWG++CFLSTPDGENCGLVKN+A TG+VSTN+ E L+DKL   GME L D
Sbjct: 515  VGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVD 574

Query: 1650 DPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIF 1829
            D + T L G+ KVFLNGEWVG+C+ S  FV  LRS RR +++P +VEIKRD+QQ EVRIF
Sbjct: 575  D-TYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIF 633

Query: 1830 SDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLT 2009
            SDAGRILRPLLVVENL KI  FKGG Y+F S                 C TAWGIK+LL 
Sbjct: 634  SDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLA 693

Query: 2010 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 2189
              + +  + Y+HCELD+SFLLGLSCGIIPFANHDHARRVLYQ++KHSQQAIGFSTTNPNI
Sbjct: 694  DIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNI 753

Query: 2190 RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 2369
            RVDTLSHQL+YPQRPLFRTM+SD L           VLPKPE FNGQNAIVAVNVH GYN
Sbjct: 754  RVDTLSHQLHYPQRPLFRTMISDCL-----------VLPKPELFNGQNAIVAVNVHLGYN 802

Query: 2370 QEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 2549
            QEDSLVMNRASLERGMFR+EH+R+YKAEVDNKEL + KR K++D + FGKIQSKIGRVDS
Sbjct: 803  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTD-KRRKSEDSITFGKIQSKIGRVDS 861

Query: 2550 LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 2729
            LDDDGFPFIGAN+QSGDIVIG+ AESGADHS+KLKHTERG VQKVVLS+NDEG N+AVVS
Sbjct: 862  LDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVS 921

Query: 2730 LRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 2909
            LRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +G+VPDIVINPHAFP+RQTPGQLL
Sbjct: 922  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLL 981

Query: 2910 EAALGKGIACVGSTRYATPFSTPSVDVITDQLHR*K 3017
            EAALGKGIAC GS RYATPFST SVD I DQLHR K
Sbjct: 982  EAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAK 1017


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score = 1349 bits (3491), Expect = 0.0
 Identities = 666/998 (66%), Positives = 792/998 (79%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC+++SM FF++YGLISHQI+SYN FI+NGIQK FD  G+I V+PGYDPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G GEWRYA V FGKVTL+ P FW      K+      ++PRHARLQNMTYSSRMK+ +S+
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASGKE----YNMLPRHARLQNMTYSSRMKINISL 158

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKH-VE-SEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCD 566
            ++YTQKL+ SDKFKTGK+Q+V K  VE + D RDV IGR+PVMV S+LCWM   +K DC+
Sbjct: 159  EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCE 218

Query: 567  FDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNES 746
            FD GGYFLIKGAEK FIAQEQICL+RLW+S    W+VAYRSE+KR R+ ++L++   +E 
Sbjct: 219  FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278

Query: 747  IQGL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYAD- 920
            ++   K+LNV FLS  +P+WILFF LG+SSD+EI+++ID   DDP ++NIL A+++  D 
Sbjct: 279  LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338

Query: 921  -ENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1097
             +  + FR+  + L ++D+ + +T FPP + I+DC++ YLF +L   K K  FLGYMVKC
Sbjct: 339  DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398

Query: 1098 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRP 1277
            LL +YTGRRKC+NRDDFRNK              VHI HA RRM KA+QRDLYGDR + P
Sbjct: 399  LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458

Query: 1278 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1457
            IEHYLDASIITNGLSRAFSTGAW+H FKR ER +GVVATL R NPLQ  A+LR+TRQQVA
Sbjct: 459  IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518

Query: 1458 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1637
            YTGKVGDAR+P+PSHWG++CFLSTPDGENCGL+KN++ TGLVS N  + +   L  CGME
Sbjct: 519  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGME 578

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
            NL D+ S TS  G+ ++FL+GEWVG+C+ SLSFV N+R KRR      +VE+KRD+Q  E
Sbjct: 579  NLVDNTS-TSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKE 637

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIFSDAGRILRPLLVVENL +I+  KG  Y FQS                 C+ AW IK
Sbjct: 638  VRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIK 697

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            +L+   +D+ +  Y+HCELD+SFLLGLSCG++PFANHDHARR L+QS+KHS QAIGFS T
Sbjct: 698  HLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPT 754

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            N N RVDTLSHQL+YPQRPLFRTM +D LG P Y   H  +LPKPE++NGQNAIVAVNVH
Sbjct: 755  NSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVH 814

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNRASLERGMFR+EH+R+YKAEVDNKE  E KR K+ D ++FGK QSKIG
Sbjct: 815  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIG 873

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFP+IGANLQSGDIVIGR AESGADHSIKLKHTE+G VQKVVLS+ND+G NY
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIA  GS +YATPFSTPSVD ITDQLHR
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHR 1031


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 666/998 (66%), Positives = 792/998 (79%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC+++SM FF++YGLISHQI+SYN FI+NGIQK FD  G+I V+PGYDPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G GEWRYA V FGKVTL+ P FW      K+      ++PRHARLQNMTYSSRMK+ +S+
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASGKE----YNMLPRHARLQNMTYSSRMKINISL 158

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKH-VE-SEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCD 566
            ++YTQKL+ SDKFKTGK+Q+V K  VE + D RDV IGR+PVMV S+LCWM   +K DC+
Sbjct: 159  EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCE 218

Query: 567  FDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNES 746
            FD GGYFLIKGAEK FIAQEQICL+RLW+S    W+VAYRSE+KR R+ ++L++   +E 
Sbjct: 219  FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278

Query: 747  IQGL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYAD- 920
            ++   K+LNV FLS  +P+WILFF LG+SSD+EI+++ID   DDP ++NIL A+++  D 
Sbjct: 279  LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338

Query: 921  -ENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1097
             +  + FR+  + L ++D+ + +T FPP + I+DC++ YLF +L   K K  FLGYMVKC
Sbjct: 339  DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398

Query: 1098 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRP 1277
            LL +YTGRRKC+NRDDFRNK              VHI HA RRM KA+QRDLYGDR + P
Sbjct: 399  LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458

Query: 1278 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1457
            IEHYLDASIITNGLSRAFSTGAW+H FKR ER +GVVATL R NPLQ  A+LR+TRQQVA
Sbjct: 459  IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518

Query: 1458 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1637
            YTGKVGDAR+P+PSHWG++CFLSTPDGENCGL+KN++ TGLVS N  + +   L  CGME
Sbjct: 519  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGME 578

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
            NL D+ S TS  G+ ++FL+GEWVG+C+ SLSFV N+R KRR      +VE+KRD+Q  E
Sbjct: 579  NLVDNTS-TSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKE 637

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIFSDAGRILRPLLVVENL +I+  KG  Y FQS                 C+ AW IK
Sbjct: 638  VRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIK 697

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            +L+   +D+ +  Y+HCELD+SFLLGLSCG++PFANHDHARR L+QS+KHS QAIGFS T
Sbjct: 698  HLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPT 754

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            N N RVDTLSHQL+YPQRPLFRTM +D LG P Y   H  +LPKPE++NGQNAIVAVNVH
Sbjct: 755  NSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVH 814

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNRASLERGMFR+EH+R+YKAEVDNKE  E KR K+ D ++FGK QSKIG
Sbjct: 815  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIG 873

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFP+IGANLQSGDIVIGR AESGADHSIKLKHTE+G VQKVVLS+ND+G NY
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIA  GS +YATPFSTPSVD ITDQLHR
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHR 1031


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1347 bits (3485), Expect = 0.0
 Identities = 659/994 (66%), Positives = 785/994 (78%), Gaps = 1/994 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L +FC++AS+ FF EYGL+SHQI+SYN F+ENGIQ++FDS GEI VEP +DPSKK
Sbjct: 49   LGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKK 108

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
            G  +WR+AA+ FGKVTL  P FW       DS +   ++PRHARLQNMTYS+RM V ++V
Sbjct: 109  GNADWRFAAIKFGKVTLSKPCFWGGS----DSDKEYNMLPRHARLQNMTYSARMSVNITV 164

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 572
            QVYTQ L++SDKFKTG EQ ++K   S D RD++IGRIPVMV+SNLCWM G++KGDC+FD
Sbjct: 165  QVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDCEFD 224

Query: 573  HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 752
             GGYF+I GAEKTFIAQEQ CLKRL ++     +VAYRSE+KR R+ ++L  +   E+++
Sbjct: 225  QGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLENVE 284

Query: 753  GL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 929
            G+ K+L+V F+S  IP+WI FF LG+SSD+E+I++ID  ++D  + NIL A+I+ ADE  
Sbjct: 285  GVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDADERK 344

Query: 930  EGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLS 1109
            + FR+    L+Y+++ +  T FPPGE ++DC+  YLFP +  LK KA FLGYMVKCLL +
Sbjct: 345  DDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQT 404

Query: 1110 YTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHY 1289
              G RKC+NRDDFRNK               H+ HA R+M KA+QRDL GD  +RP+EHY
Sbjct: 405  SIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHY 464

Query: 1290 LDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGK 1469
            LDASI+TNG+SRAFSTGAW HPFKR ER +GVVA + R NPLQ   D+RKTRQQV YTGK
Sbjct: 465  LDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQYTGK 524

Query: 1470 VGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLAD 1649
             GDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A T LVS N+ EP+L KL  CG+E L D
Sbjct: 525  AGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIEELVD 584

Query: 1650 DPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIF 1829
            D + TSL G+ KVFLNG+WVGIC  S  FV  LR  RRSK++P +VEIKRD+ +GEVRIF
Sbjct: 585  D-TYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIF 643

Query: 1830 SDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLT 2009
            SDAGRILRPLLVV+ LKKI   KG  + FQ                  C+TAW IKYL  
Sbjct: 644  SDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFM 703

Query: 2010 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 2189
             ++    V YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQS+KHSQQAIG+STTNPN+
Sbjct: 704  -EEQGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNL 762

Query: 2190 RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 2369
            RVDTLSH L+YPQRPLFRTM++D+LG+P YP GH   +PKPEYFNGQNAIVAVNVH GYN
Sbjct: 763  RVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYN 822

Query: 2370 QEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 2549
            QEDS+VMNRASLERGMFR+EH+R+YKAEV+NK   E KR K  + V+FGKIQSK GRVD+
Sbjct: 823  QEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLE-KRRKPDECVNFGKIQSKFGRVDN 881

Query: 2550 LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 2729
            LDDDGFP +GA+LQSGDI+IGR +ESG DHSIKLKHTERG VQKVVLS+ND G N+AVVS
Sbjct: 882  LDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVVS 941

Query: 2730 LRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 2909
            LRQVRSP LGDKFSSMHGQKGV+G LE QENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 942  LRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1001

Query: 2910 EAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            EAALGKGIAC GS RYATPFST SVD ITDQLHR
Sbjct: 1002 EAALGKGIACGGSKRYATPFSTLSVDDITDQLHR 1035


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1326 bits (3431), Expect = 0.0
 Identities = 658/995 (66%), Positives = 778/995 (78%), Gaps = 2/995 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E  L  FC++AS  FFSEYGLISHQI+SYN FI NG+QK+FDS G++ VEPGYDPSKK
Sbjct: 43   LGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKK 102

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 392
             Q EWRYA V FGKVTL+ P+FW      K+      L+PRHARLQNMTYSSRMKV + +
Sbjct: 103  RQNEWRYALVRFGKVTLDLPSFWGGADKDKE----YNLLPRHARLQNMTYSSRMKVNVHI 158

Query: 393  QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 572
            +VYTQKL++SDKFKTGKEQF+ K + S + +DV+IGRIPVMV+S+LCWM   +KGDC FD
Sbjct: 159  EVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCYFD 218

Query: 573  HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 752
            HGGYF+IKGAEKTFIAQEQIC KRLW++   N +VAY+SE+KR R+ L+L      ++  
Sbjct: 219  HGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLEDTTV 278

Query: 753  GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCE 932
               +L V FLS  IP+WILFF LG+SSD+E++++ID   DD  ++NIL  +I+ +DE C 
Sbjct: 279  EKDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCA 338

Query: 933  GFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSY 1112
            GFR++ K L +++  + +T+FPP E  ++C+D +LFP L  +  KA FLGYMVKCLL ++
Sbjct: 339  GFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAF 398

Query: 1113 TGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEHYL 1292
            TGRRKC N+DDFRNK                + HA +R  KA+QRDLYGD+ LR IE YL
Sbjct: 399  TGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYL 458

Query: 1293 DASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKV 1472
            DASI+TNGLSRAFSTGAW HPFK+TER +GVVA + RTNPLQ   D+RKTRQQV YTGKV
Sbjct: 459  DASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYTGKV 518

Query: 1473 GDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADD 1652
            GDAR+P+PSHWGK+CFLSTPDGENCGLVKN+AATGLVS N+ E L+  L   GMENLA+D
Sbjct: 519  GDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENLAND 578

Query: 1653 PSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFS 1832
             + T L  + KVFLNG+W+G+C  SL+FV  LR KRR  ++P +VEIKRD+Q GEVRIFS
Sbjct: 579  -TYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFS 637

Query: 1833 DAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLLTG 2012
            D+GRILRPLLVVENL +I   K G Y F S                 C+TAWGIKYL   
Sbjct: 638  DSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLFME 697

Query: 2013 DKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIR 2192
            D  +P V+YTHCELD+SFLL +SCGIIPFANHDHARRVLYQ++KHSQQAIGF TTNP+IR
Sbjct: 698  DGGKP-VNYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPDIR 756

Query: 2193 VDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQ 2372
            VDTLSHQL+YPQRPLF+TM SD LG+  Y       +PK E FNGQNAIVAVNVH GYNQ
Sbjct: 757  VDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGYNQ 816

Query: 2373 EDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSL 2552
            EDS+VMNRASLERGMFR+EH+R+YKA+VDNKE  + KR K  D  +F KI SK GRVDSL
Sbjct: 817  EDSIVMNRASLERGMFRSEHIRSYKADVDNKESTD-KRRKPDDCFNFAKIPSKNGRVDSL 875

Query: 2553 DDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSL 2732
            DDDGFPFIGANLQSGDIVIGR AESGADHSIKLKHTE+G VQKVVLS+ND+G N+AVVSL
Sbjct: 876  DDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSL 935

Query: 2733 RQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLE 2912
            RQVR P LGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLE
Sbjct: 936  RQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 995

Query: 2913 AALGKGIACVGS--TRYATPFSTPSVDVITDQLHR 3011
            AALGKGIA       R+ATPFSTPSVD IT+QLH+
Sbjct: 996  AALGKGIALAKGIPLRHATPFSTPSVDAITEQLHK 1030


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1325 bits (3429), Expect = 0.0
 Identities = 655/995 (65%), Positives = 790/995 (79%), Gaps = 2/995 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L ++++  FC++AS+ FF EYGLISHQI+SYN F  +G+Q  FDS G++TV PG+DPSKK
Sbjct: 47   LGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSKK 106

Query: 213  GQGE-WRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 389
            G  E +RYA+V FGKVTL+ P FW  E   ++    +K++PRHARLQ MTY+S+MKV + 
Sbjct: 107  GDNEHYRYASVKFGKVTLDRPMFWCGEGNTQE----MKMLPRHARLQRMTYASKMKVNVQ 162

Query: 390  VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            VQVY  K ++SDKFKTGKE+++ + +  ++ R++ IGR+PVMV+S+LCWMNG++KGDC+F
Sbjct: 163  VQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDCEF 222

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYFLIKGAEK FIAQEQI LKRLWV+  P W+VAY+S++KR R+ +KL++    E I
Sbjct: 223  DHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVEGI 282

Query: 750  Q-GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 926
            + G K+L V FLS+ IP+W+LFF LG++SD++I+++ID    D  + NIL A+I+ ADE 
Sbjct: 283  KNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREADEK 342

Query: 927  CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1106
            CE FR+    L YI++ +   +FPP E I +C++ Y+FP +  L  KA +L YMVK LLL
Sbjct: 343  CEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVLLL 402

Query: 1107 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1286
            +YTGRRK +NRDDFRNK              VHI HA +RM KA+QRDLYGDR++  IEH
Sbjct: 403  AYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQIEH 462

Query: 1287 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1466
            YLDASIITNGL RAFSTGAW+HP+KR ER +GVVATL RTNPLQ  A+LR+TRQQV YTG
Sbjct: 463  YLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTG 522

Query: 1467 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1646
            KVGDAR+P+PSHWGK+CFLSTPDGENCGLVKNMA TGLVSTN+ E +L +L  CGME L 
Sbjct: 523  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEELV 582

Query: 1647 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1826
            DD +   L  +DKVFLNG+WVG+C  S SFV  LR++RR  ++P +VEIKRD  Q EVRI
Sbjct: 583  DDTTAV-LGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRI 641

Query: 1827 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIKYLL 2006
             SDAGRILRPLLVV NL KI   K     FQS                 CKTAWG+ YL 
Sbjct: 642  LSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYLF 701

Query: 2007 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 2186
             G + + SV YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+KHS QAIGFSTTNP+
Sbjct: 702  -GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPD 760

Query: 2187 IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 2366
            IRVD LSHQL+YPQ+PLF+TM SD LG+P Y  G + +LPK E++NGQNAIVAVNVH GY
Sbjct: 761  IRVDALSHQLFYPQKPLFQTMTSDCLGKPGY-LGPSKLLPKSEFYNGQNAIVAVNVHLGY 819

Query: 2367 NQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 2546
            NQEDSLVMNRASL+RGMFR+EH+R+YKAE +NKE  E KR K +D V+FGKIQSKIGRVD
Sbjct: 820  NQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKR-KPEDIVNFGKIQSKIGRVD 878

Query: 2547 SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 2726
            SLDDDGFPF+GANLQ GDI+IGR A+SGADHSIKLKHTERG VQKVVLS+NDEG N+AVV
Sbjct: 879  SLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVV 938

Query: 2727 SLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 2906
            SLRQVRSP LGDKFSSMHGQKGV+G LESQENFPFT++GIVPDIVINPHAFP+RQTPGQL
Sbjct: 939  SLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 998

Query: 2907 LEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            LEAALGKGIACVGS R ATPFST SV+ ITDQLHR
Sbjct: 999  LEAALGKGIACVGSLRNATPFSTSSVEAITDQLHR 1033


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 656/998 (65%), Positives = 789/998 (79%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            LSE  L   CR+AS  FF +YGLISHQI+SYN F+ +GIQK+FDS+GEI VEPGYDPSKK
Sbjct: 50   LSEGFLKVSCRKASTAFFDQYGLISHQINSYNDFVNHGIQKVFDSIGEIVVEPGYDPSKK 109

Query: 213  GQGEWRYAAVTFGKVTLEPPTFWSTEKPQK--DSKEFLKLMPRHARLQNMTYSSRMKVEM 386
            G+G+W+ A + FGKVTLE PTFW+ EK      +K++L+L+PRHARLQNMTY++++KVE 
Sbjct: 110  GEGDWKRACLKFGKVTLERPTFWTGEKFSSVDGAKDYLELLPRHARLQNMTYAAKIKVET 169

Query: 387  SVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCD 566
             +QVYT+ L +SDKF TG E  V+K + +E   +V  GR+PVMV+S+LCWM  L K DC+
Sbjct: 170  HLQVYTKGLNRSDKFTTGVENTVEKTLLNEYHNEVNFGRLPVMVKSDLCWMKSLDKKDCE 229

Query: 567  FDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNES 746
            FD GGYF+IKGAEKTFIAQEQ+CLKRLWV++ P+W+V+YR   +R RVY+KL+  P  E 
Sbjct: 230  FDQGGYFVIKGAEKTFIAQEQLCLKRLWVTKIPSWTVSYRPVARRNRVYIKLV--PKMEH 287

Query: 747  IQGL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADE 923
            + G  KIL V F    I +W+LFF LG+ +D+E++++ID++++D  + NILIA+I  AD+
Sbjct: 288  VIGADKILTVYFYVTEISVWVLFFALGIPNDKEVVKLIDLDIEDSDIANILIASIYDADK 347

Query: 924  NCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLL 1103
              EGFRKEG   K+I +LM   KFPP E I+D +  YLFP L     KA FLGYMVKCLL
Sbjct: 348  KYEGFRKEGNSSKHIKELMQNCKFPPTESIEDLIKNYLFPHLKTPIQKACFLGYMVKCLL 407

Query: 1104 LSYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIE 1283
             +Y GRRK ENRDDFRNK              VHI+HAERRM KAMQRDLY DR ++ I+
Sbjct: 408  EAYKGRRKVENRDDFRNKRLELAGELLERELRVHIKHAERRMTKAMQRDLYRDREVQSID 467

Query: 1284 HYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYT 1463
             YLDASI+TNGLSRAFSTGAW HPFKR ERT+GVVAT+RRTNPLQ  AD+RKTRQQV+YT
Sbjct: 468  QYLDASIVTNGLSRAFSTGAWCHPFKRMERTSGVVATIRRTNPLQAIADMRKTRQQVSYT 527

Query: 1464 GKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEP--LLDKLLGCGME 1637
            G+VGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLVSTNL+    LL K   CGME
Sbjct: 528  GRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTNLLAQGNLLKKFQQCGME 587

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
             + DD S   L G+ KVFL+G+W+GICK S SFV  LR KRR  +IP ++EIKRDQ  GE
Sbjct: 588  KMVDDTS-NLLGGKHKVFLDGDWIGICKDSSSFVSKLRRKRRRMEIPHQMEIKRDQHNGE 646

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRIF+D+GRILRPLLVV+NLKKI   KG  + FQS                 C+TAWG++
Sbjct: 647  VRIFNDSGRILRPLLVVQNLKKIKDLKGN-FSFQSLLDNGIIELIGAEEEEDCQTAWGVR 705

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            YL T + + P V YTHCELD SFLLGLSCGI+PF NHDHARRVLYQSEKHSQQAIG+STT
Sbjct: 706  YLFTAELENPPVKYTHCELDSSFLLGLSCGIVPFTNHDHARRVLYQSEKHSQQAIGYSTT 765

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            N  IRVDT SH LYYPQRPLFRT+LSD+LGR  +   +  ++P+PE++NGQ AIVA+NVH
Sbjct: 766  NSIIRVDTNSHSLYYPQRPLFRTVLSDSLGRSTFSDHYKGMIPRPEFYNGQCAIVAINVH 825

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNR+SLERGMFRTEHVR++KA+V+N E    K++K  + V FGK+QSKIG
Sbjct: 826  LGYNQEDSLVMNRSSLERGMFRTEHVRSFKADVENSEAVGGKKVKMDEMVSFGKMQSKIG 885

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSL+DDGFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTE+G V KVVLSANDEG N+
Sbjct: 886  RVDSLEDDGFPYIGANLQTGDIVIGKHAATGVDHSIKLKHTEKGMVHKVVLSANDEGKNF 945

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVRSPCLGDKFSSMHGQKGV+G LESQENFPF+++GIVPDIVINPHAFP+RQTP
Sbjct: 946  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFSQQGIVPDIVINPHAFPSRQTP 1005

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIA  G  +YATPFS+PSV+ IT QLHR
Sbjct: 1006 GQLLEAALGKGIALGGGLKYATPFSSPSVEDITAQLHR 1043


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 638/998 (63%), Positives = 792/998 (79%), Gaps = 5/998 (0%)
 Frame = +3

Query: 33   LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 212
            L E+++  +C++ASM FF EYGLISHQI+S+N F+  G+Q  FDS G++ V PG+DPSKK
Sbjct: 49   LGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKK 108

Query: 213  GQGE-WRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 389
            G+ E +RYA+V FGKV L+ P FW  E    +++EF K++PRHAR+Q MTY+S++K+++ 
Sbjct: 109  GENEHFRYASVKFGKVKLDKPMFWGGEG---NAQEF-KMLPRHARIQRMTYASKVKIQVK 164

Query: 390  VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 569
            VQVY  K ++SDKFKTGKE+F+ + +  ED+R+++IGR+PVMV+S+LCWM   +K D +F
Sbjct: 165  VQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEF 224

Query: 570  DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 749
            DHGGYF++KGAEKTFIAQEQ+ LKRLWV   P W +AY+S++KR R+ +KL+    +E +
Sbjct: 225  DHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEV 284

Query: 750  Q-GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 926
            + G   L V FLS+ +P+W+LFF LG+SSD+EI+++I    DD  + NIL A+++ ADE 
Sbjct: 285  ENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEK 344

Query: 927  CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1106
            C  FR+    ++Y++  +   +FPP E +++C++ Y+FP +  L  KA FL YMVK LLL
Sbjct: 345  CGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLL 404

Query: 1107 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXXVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1286
            +YTGRRKC+NRDDFRNK              VH+ HA +RM KA+QRDLYGDR++RPIEH
Sbjct: 405  AYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEH 464

Query: 1287 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1466
            YLDASIITNGL RAFSTGAWSHP+KR ER +GVVA + RTNPLQ  A+LR+ RQQV YTG
Sbjct: 465  YLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTG 524

Query: 1467 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVS---TNLVEPLLDKLLGCGME 1637
            KVGDAR+P+PSHWGK+CFL+TPDGENCGLVKN++ TGLVS   T++ E +L KL+ CGM+
Sbjct: 525  KVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCGMQ 584

Query: 1638 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1817
             L DD S T L   DKV LNG+WVG+C  S SFV  LRS+RR  ++P +VEIKRDQ Q E
Sbjct: 585  ELVDDTS-THLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHE 643

Query: 1818 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXXCKTAWGIK 1997
            VRI+SDAGRILRPLLVV NL KI  FK   Y FQS                 C TAWG++
Sbjct: 644  VRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVE 703

Query: 1998 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 2177
            YL  G + + SV YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+KHS QAIGFSTT
Sbjct: 704  YLF-GKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTT 762

Query: 2178 NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 2357
            NPNIRVDTLSHQL+YPQ+PLFRTM SD LG+P++  G + + PK E++NGQNAIVAVNVH
Sbjct: 763  NPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVH 822

Query: 2358 QGYNQEDSLVMNRASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 2537
             GYNQEDSLVMNRASL+RGMFR+EH+R+YK+E+DNKE  + KR K +D V+F K+QSKIG
Sbjct: 823  LGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKR-KPEDIVNFAKLQSKIG 881

Query: 2538 RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 2717
            RVDSLDDDGFP++GANLQSGDI+IG+ AESGAD+S+KLKHTERG VQKVVLS+NDEG N+
Sbjct: 882  RVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF 941

Query: 2718 AVVSLRQVRSPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 2897
            AVVSLRQVRSP LGDKFSSMHGQKGV+G LESQENFPFTR+GIVPDIVINPHAFP+RQTP
Sbjct: 942  AVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTP 1001

Query: 2898 GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHR 3011
            GQLLEAALGKGIAC G  + ATPFSTPSVD IT+QLHR
Sbjct: 1002 GQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHR 1039