BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00003707
         (1942 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              605   e-170
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   599   e-168
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   595   e-167
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   594   e-167
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   593   e-167
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   593   e-166
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   586   e-164
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   578   e-162
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   577   e-162
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   574   e-161
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   565   e-158
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   565   e-158
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   536   e-149
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   528   e-147
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     515   e-143
ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [A...   506   e-140
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   506   e-140
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   505   e-140
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   504   e-140
ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutr...   502   e-139

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  605 bits (1560), Expect = e-170
 Identities = 323/568 (56%), Positives = 417/568 (73%), Gaps = 4/568 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 296
            ME G N+L S+P F P+THFR+S  SSV +LH+Q   AV S PTT I R FPTSVLLQEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNS-SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQ 58

Query: 297  RDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 473
            RDE+RP  Q +++++T QATL++RQ +  VS  +E+ S   +QY+ +FER+         
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFERQLLLQPGLWY 117

Query: 474  XXXXXXKGEK-PLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLF 650
                   GEK P  S   +SI  D +  + +KPCDVLALAK+A+ AS+QA SL E + L 
Sbjct: 118  SLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLL 177

Query: 651  GADFDDS-FPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTA 827
            GAD +DS  P +G  SS    PLEE+                          E    R A
Sbjct: 178  GADLEDSPSPSLGAISSP-NLPLEEKT---VRSTRLLERRSKKRRNPKVAVHENHGSRRA 233

Query: 828  AKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDR 1007
                K++EG+DP DPLRLFL G ET++LLTAKEE EL  QIQEL RLEEVK++LQS   R
Sbjct: 234  EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 293

Query: 1008 EPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQD 1187
            EPT++EWA+AVG+SC+ L+SQ+HSGNRSR+K+ YAN RMVVH+AKQY   GL+LQDL+Q+
Sbjct: 294  EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 353

Query: 1188 GSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAR 1367
            GS+GLM S+EKFKP   CRF+SYAYWWIRQA+RKAIFQ SRT+RLPEN+++ L +++ A+
Sbjct: 354  GSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAK 413

Query: 1368 EQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTE 1544
              F+QEG H PT EE+A+RVG+T+ +L+ LL+ TR+PLSMQQPVW+DQDTTFQE+TADT 
Sbjct: 414  RLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTG 473

Query: 1545 VEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERV 1724
            +EIPD+SV KQLMR+HVRNLL +L+PKERRI+RLR+GI DG  ++LS+IGLVFG SKERV
Sbjct: 474  IEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERV 533

Query: 1725 RQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            RQLE +A+ KL++C+SS GLE+Y++LL+
Sbjct: 534  RQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  599 bits (1545), Expect = e-168
 Identities = 322/578 (55%), Positives = 416/578 (71%), Gaps = 14/578 (2%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSS----------VPILHEQATLAVTSTPTTSITRH 266
            ME G N+L S+P F P+THFR+S  S           V +LH+Q   AV S PTT I R 
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARK 59

Query: 267  FPTSVLLQEQRDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFER 443
            FPTSVLLQEQRDE+RP  Q +++++T QATL++RQ +  VS  +E+ S   +QY+ +FER
Sbjct: 60   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFER 118

Query: 444  RXXXXXXXXXXXXXXXKGEK-PLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQA 620
            +                GEK P  S   +SI  D +  + +KPCDVLALAK+A+ AS+QA
Sbjct: 119  QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178

Query: 621  ASLAEESNLFGADFDDS-FPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXX 797
             SL E + L GAD +DS  P +G  SS    PLEE+                        
Sbjct: 179  VSLYENAKLLGADLEDSPSPSLGAISSP-NLPLEEKT---VRSTRLLERRSKKRRNPKVA 234

Query: 798  XXETPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEV 977
              E    R A    K++EG+DP DPLRLFL G ET++LLTAKEE EL  QIQEL RLEEV
Sbjct: 235  VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 294

Query: 978  KRKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRW 1157
            K++LQS   REPT++EWA+AVG+SC+ L+SQ+HSGNRSR+K+ YAN RMVVH+AKQY   
Sbjct: 295  KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 354

Query: 1158 GLSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVF 1337
            GL+LQDL+Q+GS+GLM S+EKFKP   CRF+SYAYWWIRQA+RKAIFQ SRT+RLPEN++
Sbjct: 355  GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 414

Query: 1338 NTLRQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDT 1514
            + L +++ A+  F+QEG H PT EE+A+RVG+T+ +L+ LL+ TR+PLSMQQPVW+DQDT
Sbjct: 415  SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 474

Query: 1515 TFQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIG 1694
            TFQE+TADT +EIPD+SV KQLMR+HVRNLL +L+PKERRI+RLR+GI DG  ++LS+IG
Sbjct: 475  TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 534

Query: 1695 LVFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            LVFG SKERVRQLE +A+ KL++C+SS GLE+Y++LL+
Sbjct: 535  LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  595 bits (1535), Expect = e-167
 Identities = 327/576 (56%), Positives = 412/576 (71%), Gaps = 12/576 (2%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVP-----ILHEQATLAVTSTPTTSITRHFPTSV 281
            ME GR+ L SS  F   TH R  +PSS P     +LHEQA  AVTS P TS+ RHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 282  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQY-LKDFERRXXX 455
            LLQEQRDEF+PLL + +EDKTS+A LDR Q + G S  E+      D Y L +  +    
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDI--DDFYPLVNSSKPQLL 118

Query: 456  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 635
                         G KP   +T +S+   ++K + ++PC+V+ALAK+A+ ASR+AASLAE
Sbjct: 119  NHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 636  ESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXX---- 803
            +S   GADFDD    +G+TS  + N + EE K                            
Sbjct: 179  DSQSMGADFDD----LGYTS--LANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGH 232

Query: 804  ETPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKR 983
            E+ S+  +    K+SEGF+PNDPLRLFL G ET+QLLTAKEE EL A++Q+L +LEEVK 
Sbjct: 233  ESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKS 292

Query: 984  KLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGL 1163
            +LQ+QF REPTLIEWA+AVG+SC+ LKSQ+ SG  SREK+ YAN RMVVH+AKQY   GL
Sbjct: 293  RLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGL 352

Query: 1164 SLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNT 1343
             LQDLMQ+GS+GLMKS+EKFKPQ  CRF++YAYWWIRQ +RKAIFQ SRT+RLPENV++ 
Sbjct: 353  GLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSL 412

Query: 1344 LRQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTF 1520
            L ++  A++  +QEG H P  EELA+RVG+TV +LE LL +TR+PLSMQQPVW+DQDTTF
Sbjct: 413  LGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTF 472

Query: 1521 QEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLV 1700
            QE+TADT VEIPD+SV KQLMR+HVR+LLSIL+ +ER I+RLRYGIEDG+Q+SLS+IG +
Sbjct: 473  QEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGM 532

Query: 1701 FGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            FG+SKERVRQLE++A  KLR+ + SQGL AY  LL+
Sbjct: 533  FGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  594 bits (1532), Expect = e-167
 Identities = 316/566 (55%), Positives = 400/566 (70%), Gaps = 2/566 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 296
            ME GRNLL S P F  +T  + S+ SS       +  AV S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 297  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 473
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 474  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 653
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 654  ADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTAAK 833
            A+F D        +SS+  PLEE   V                       ET + R A+ 
Sbjct: 181  AEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 834  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1013
              KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1014 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1193
            TLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1194 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1373
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1374 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1550
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1551 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1730
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1731 LENQAMGKLRKCMSSQGLEAYSNLLI 1808
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  593 bits (1530), Expect = e-167
 Identities = 320/574 (55%), Positives = 405/574 (70%), Gaps = 10/574 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFR--------SSIPSSVPILHEQATLAVTSTPTTSITRHFP 272
            ME GRNLL S P F  +T  +        SS  SSV + +EQ+  AV S PT+S+ RHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 273  TSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRX 449
            TSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E + 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 450  XXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASL 629
                          +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASL
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 630  AEESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXET 809
            AE   L GA+F D        +SS+  PLEE   V                       ET
Sbjct: 181  AENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHET 235

Query: 810  PSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 989
             + R A+   KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KL
Sbjct: 236  YNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 990  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1169
            QSQF REPTLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L
Sbjct: 296  QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1170 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1349
             DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1350 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1526
            ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1527 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1706
            ITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1707 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            +SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  593 bits (1528), Expect = e-166
 Identities = 319/575 (55%), Positives = 405/575 (70%), Gaps = 11/575 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVP--------ILH-EQATLAVTSTPTTSITRHF 269
            ME GRNLL S P F  +T  + S+ SS          ++H EQ+  AV S PT+S+ RHF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 270  PTSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERR 446
            PTSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 447  XXXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAAS 626
                           +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AAS
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 627  LAEESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXE 806
            LAE   L GA+F D        +SS+  PLEE   V                       E
Sbjct: 181  LAENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 807  TPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRK 986
            T + R A+   KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K K
Sbjct: 236  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 295

Query: 987  LQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLS 1166
            LQSQF REPTLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ 
Sbjct: 296  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 355

Query: 1167 LQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTL 1346
            L DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L
Sbjct: 356  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 415

Query: 1347 RQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQ 1523
             ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQ
Sbjct: 416  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 475

Query: 1524 EITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVF 1703
            EITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +F
Sbjct: 476  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 535

Query: 1704 GISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            G+SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  586 bits (1511), Expect = e-164
 Identities = 321/565 (56%), Positives = 400/565 (70%), Gaps = 2/565 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 296
            ME GR LL SSP F  +TH ++S+ SSV IL EQAT AV+S PTTS  +HFPTSVLLQEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQ 60

Query: 297  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 473
            RDEFRPL  I +ED+ SQATLDRR+T+ G S  E K S + DQ +++FE +         
Sbjct: 61   RDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWN 120

Query: 474  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 653
                                    DK++ ++P +V+ LAK A+ AS+ AA LA+ +    
Sbjct: 121  L----------------------TDKLIDVEPTNVINLAKRALSASKHAAFLADNN---- 154

Query: 654  ADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTAAK 833
             D D+    +  TSSS    LEE   V                       ET   ++A  
Sbjct: 155  TDLDN----LASTSSS-SFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADV 209

Query: 834  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1013
              +LS+GFDPNDPLRLFL G ETKQLLTAKEE EL AQIQ+L  LE VK +L+SQF REP
Sbjct: 210  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 269

Query: 1014 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1193
            TL+EWA+AVG+SC  LK Q+HSGNRSREK+  AN RMVVH+AK+Y   GL LQDL+Q+G+
Sbjct: 270  TLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 329

Query: 1194 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1373
            +GLMKSIEKFKPQ  CRF++YAYWWIRQ I KAIFQ SRT+RLPENV+  L ++  A+  
Sbjct: 330  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 389

Query: 1374 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1550
            ++QEG HQPT EE+A+RVG+ + +LE LL  TR PLSMQQ VWSDQ+TTFQEITADTE+E
Sbjct: 390  YIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 449

Query: 1551 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1730
            IPD+SV KQLMR+H+R LL+ILS KERRI+RLR+GIEDG+QKSLS+IG VFG+SKERVRQ
Sbjct: 450  IPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQ 509

Query: 1731 LENQAMGKLRKCMSSQGLEAYSNLL 1805
            LE++A+ KL++C+ S GL+AY++LL
Sbjct: 510  LESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  578 bits (1490), Expect = e-162
 Identities = 311/566 (54%), Positives = 394/566 (69%), Gaps = 2/566 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 296
            ME GRNLL S P F  +T  + S+ SS       +  AV S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 297  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 473
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 474  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 653
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 654  ADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTAAK 833
            A+F D        +SS+  PLEE   V                       ET + R A+ 
Sbjct: 181  AEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 834  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1013
              KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 236  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1014 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1193
            TLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 296  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1194 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1373
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1374 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1550
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1551 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1730
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1731 LENQAMGKLRKCMSSQGLEAYSNLLI 1808
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  577 bits (1488), Expect = e-162
 Identities = 315/574 (54%), Positives = 399/574 (69%), Gaps = 10/574 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFR--------SSIPSSVPILHEQATLAVTSTPTTSITRHFP 272
            ME GRNLL S P F  +T  +        SS  SSV + +EQ+  AV S PT+S+ RHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 273  TSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRX 449
            TSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E + 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 450  XXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASL 629
                          +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASL
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 630  AEESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXET 809
            AE   L GA+F D        +SS+  PLEE   V                       ET
Sbjct: 181  AENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHET 235

Query: 810  PSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 989
             + R A+   KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KL
Sbjct: 236  YNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 990  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1169
            QSQF REPTLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L
Sbjct: 296  QSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1170 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1349
             DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1350 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1526
            ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1527 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1706
            ITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1707 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            +SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  574 bits (1480), Expect = e-161
 Identities = 310/566 (54%), Positives = 395/566 (69%), Gaps = 2/566 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 296
            ME GRNLL S P F  +T  + S+ SS       ++ +V S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS---SSSSSSVASVPTSSVARHFPTSVLLQEQ 57

Query: 297  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 473
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 58   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 117

Query: 474  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 653
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 118  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 177

Query: 654  ADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTAAK 833
            A+F D        +SS+  PLEE   V                       ET + R A+ 
Sbjct: 178  AEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 232

Query: 834  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1013
              KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 233  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 292

Query: 1014 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1193
            TLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 293  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 352

Query: 1194 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1373
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 353  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 412

Query: 1374 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1550
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 413  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472

Query: 1551 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1730
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 473  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532

Query: 1731 LENQAMGKLRKCMSSQGLEAYSNLLI 1808
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 533  LESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  565 bits (1457), Expect = e-158
 Identities = 313/574 (54%), Positives = 398/574 (69%), Gaps = 10/574 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSS-------VPILHEQATLAVTSTPTTSITRHFPT 275
            ME  R  L S P F  +THF++S+ SS       V +LHEQA  AVTS PTTSI R+FPT
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 276  SVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXX 452
            SVLLQEQRDEFRPLL I +EDKT QAT+D +Q D G S  E   S   DQ +        
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLILHSNLSW- 119

Query: 453  XXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLA 632
                                S+T QSI  + D+++ ++P +V+ LA++A+ AS++AA LA
Sbjct: 120  --------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLA 159

Query: 633  EESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETP 812
            ++     A+ DD+    G   + + N   EE+K                          P
Sbjct: 160  QKC----ANLDDTV-STGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEP 214

Query: 813  -SWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 989
             S R A    K++EGFDP DPLRLFL G ETKQLLTAKEE EL  Q+Q+L  LE VK K 
Sbjct: 215  YSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKF 274

Query: 990  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1169
            + QF R+PTL+EWA AVG+S   ++SQ+HSGNRSREK+  AN RMVVH+AKQY   GLSL
Sbjct: 275  KLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSL 334

Query: 1170 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1349
            QDL+Q+GS+GLMKSIEKFKPQ  CRF++YAYWWIRQ +RKAIFQ SRT+RLPENV++TL 
Sbjct: 335  QDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLG 394

Query: 1350 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1526
            ++  A+  ++ EG H PT EELAKR+G+T  RLE LL   R+PLSMQQ VW+DQ+TTFQE
Sbjct: 395  KVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQE 454

Query: 1527 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1706
            ITAD EVEIP+L V KQLMR+HV +LL+IL+P+ER+I+RLRYGIEDG++KSLS+IG VFG
Sbjct: 455  ITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFG 514

Query: 1707 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            +SKERVRQLE++A+ KL++C++S GLEAY++LL+
Sbjct: 515  LSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  565 bits (1455), Expect = e-158
 Identities = 304/573 (53%), Positives = 396/573 (69%), Gaps = 9/573 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSI----PSSVPILHEQATLAVTSTPTTSITRHFPTSVL 284
            ME  RNLL   P F  +T  +SS+     SSV + HEQA  A TS P TS+ RHFPTSVL
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 285  LQEQRDEFRPLLQI---REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXX 455
            LQEQRD++RPL  +   +EDK      D++Q +NG S  EE  S    Q    FE++   
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKLLQ 118

Query: 456  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 635
                          E P  +   QS+  D  +IV ++P +++ALAK+A+ AS+QAASL+E
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178

Query: 636  ESNLFGADFDDSFPRMGHTSSSIENPLE-EEIKVXXXXXXXXXXXXXXXXXXXXXXXETP 812
            +  L   D DDS      +++S   P+E EE+                         ET 
Sbjct: 179  DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETY 235

Query: 813  SWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQ 992
            S R      KLSEGFDPNDPLRLFL G ETKQLLTAKEE EL  Q+Q L RLE+VK KLQ
Sbjct: 236  SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQ 295

Query: 993  SQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQ 1172
            SQF REPTL+EWA+A+G+ C  L++++HSGN SR+K+ YAN RMVVH+AKQY   GLSLQ
Sbjct: 296  SQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQ 355

Query: 1173 DLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQ 1352
            DL+Q+GS+GLMKS+E+FKPQ  CRF++YAYWWIRQ IRK+I Q SRTVRLPENV   L +
Sbjct: 356  DLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSK 415

Query: 1353 IRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEI 1529
            + +A++ +++EG H P+ EELA+RVG+TV +L+ LL +TR+PLSMQQ VW DQD TFQE+
Sbjct: 416  VLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEV 475

Query: 1530 TADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGI 1709
            T DT +EIPD+SV KQLMR+HVRNLLS+LSP+ER I++LR+GIE+ ++ SLS+IG +FG+
Sbjct: 476  TPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGL 535

Query: 1710 SKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            SKERVRQLE++A+ KL++C++  GL AY +LL+
Sbjct: 536  SKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  536 bits (1382), Expect = e-149
 Identities = 303/573 (52%), Positives = 385/573 (67%), Gaps = 9/573 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVP-----ILHEQATLAVTSTPTTSITRHFPTSV 281
            ME GR+ L SS  F   T  R  +P S P     +LHEQA  AVTS PT+ ITRHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 282  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQY--LKDFERRXX 452
            LLQEQRDEF+PLL I +E+K SQATLDR Q +N  +   E+     D Y  +KDF +   
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTA---EEDFNIDDFYKLVKDFRQLHV 117

Query: 453  XXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLA 632
                              L S TT ++ +D +      P DVL LAK A+ AS +AASLA
Sbjct: 118  TPSQIGENSPTG----SALESNTTANVHMDVE------PSDVLTLAKHALSASLEAASLA 167

Query: 633  EESNLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETP 812
            E S    A  ++S      TS  +    E                            E  
Sbjct: 168  ETSKSISAGLNES------TSLGLGWEEETVRSTQLLERRRKRLKKRNLLNSKVPNYENS 221

Query: 813  SWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQ 992
            S  ++    K  EG +PNDPLRLFL G ET+QLLT KEE EL A++Q++ +LE VK +LQ
Sbjct: 222  SSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQ 281

Query: 993  SQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQ 1172
            SQF REPTLIEWA+AVG+SC+ L+SQ+  G  SREK+ Y+N RMVVH+AKQY   GL LQ
Sbjct: 282  SQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQ 341

Query: 1173 DLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQ 1352
            DL+Q+GS+GLMKS+EKFKPQ  CRF++YAYWW+RQ IRKAIFQ SRT+RLPENV+  L +
Sbjct: 342  DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGK 401

Query: 1353 IRNAREQFVQEGHQ-PTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEI 1529
            +  A++ ++QEG+Q P+ EELA+RVG++V +L  LL  TR+P+SMQQ VW+DQDTTFQE+
Sbjct: 402  VLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEV 461

Query: 1530 TADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGI 1709
            TADT +EIPDLSV KQLMR+HVRNLL  L  +ER+I+RLRYGIEDG+Q+SL++IG +FG+
Sbjct: 462  TADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGL 521

Query: 1710 SKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            SKERVRQLE++A  KL++ + SQGL AY+ LL+
Sbjct: 522  SKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  528 bits (1359), Expect = e-147
 Identities = 286/570 (50%), Positives = 387/570 (67%), Gaps = 6/570 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFR--SSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQ 290
            ME  R+L+ S P F  +TH R  SS  SSV +LHEQ T A+TS  T S+ RH  TSVL+Q
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQ 60

Query: 291  EQRDEFRPLLQIREDKTSQATLDRRQ---TDNGVSFCEEKKSCQSDQYLKDFERRXXXXX 461
            +QR+E RPLL +++D T Q T DRRQ   T    S  E       DQY  D + +     
Sbjct: 61   DQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRP 120

Query: 462  XXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEES 641
                      K E P  + T  S+   A+ +   +   VLALA+EA  A ++AAS+AE++
Sbjct: 121  ELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDA 180

Query: 642  NLFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWR 821
             L+    D+S      T S + +P++   ++                       E    R
Sbjct: 181  RLY----DNS----SSTRSLVGSPVQ---RIVRSKRRLERQAKRRAPKPQLEDQEMNHRR 229

Query: 822  TAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQF 1001
                H K SEG+DPNDPLRLFL G ET QLL+AKEE +L A+IQEL +L+EV+ +LQ+QF
Sbjct: 230  KLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQF 289

Query: 1002 DREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLM 1181
             REPTL+EWA AVG+S + L+ Q++ GN SREK+ YANFR+VV++AKQY   GL+LQDL+
Sbjct: 290  SREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLL 349

Query: 1182 QDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRN 1361
            Q GS+GLMKS+EKFKP   CRF++YAYWWIRQ+IRK++FQ SRT+RLPENV+  L ++  
Sbjct: 350  QLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYE 409

Query: 1362 AREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITAD 1538
            A++  +++G HQPT E++A   GL+V +L+ LL ++RVPLSMQ+PVW DQDTTFQEITAD
Sbjct: 410  AKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITAD 469

Query: 1539 TEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKE 1718
            T VE PD+  +KQ+MR+H RNLLS+L+P+ER+I+RLR+GIEDG+QKSLS IG  FG+SKE
Sbjct: 470  TAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKE 529

Query: 1719 RVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            R+RQ+E++A+ KL++C+SS GL AY+ +L+
Sbjct: 530  RIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  515 bits (1327), Expect = e-143
 Identities = 288/571 (50%), Positives = 376/571 (65%), Gaps = 7/571 (1%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRSSIPSSVPI-LHEQATLAVTSTPTTSITRHFPTSVLLQE 293
            MEVGRNLL   P F  +TH R+ +PSS            +TS P TSI + F TSVLLQE
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQE 60

Query: 294  QRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXX 470
            QRDEF+PLL++ +EDKTSQ  L+RRQ D+G    E+      +Q++ +FER         
Sbjct: 61   QRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLE-DYNQFVWEFERPSVHWPGFW 119

Query: 471  XXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLF 650
                      K   S+T ++      K V ++  D +ALAK+A++AS++AASLAEES L 
Sbjct: 120  HVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKLV 179

Query: 651  GADFDD----SFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSW 818
            G D DD    SF   G  +      LE   K                        E P  
Sbjct: 180  GTDSDDMLSVSFLGKGDKTVRSTRLLERRSK------------RRKVPESSVLFYENPRN 227

Query: 819  RTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQ 998
            R A    +LSEG + +DPLRLFL+G ET+QLLT +EE EL AQ+Q+L +LE+VK +LQS+
Sbjct: 228  RAADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSE 287

Query: 999  FDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDL 1178
            F REPTL+EWA+AVG+SCR L+SQI SG  SREK+  AN R+VVH+AKQY   G+ +QDL
Sbjct: 288  FGREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDL 347

Query: 1179 MQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIR 1358
            MQ+GS+GLMKS+EKFKPQ  CRF+SYAYWWIRQ                ENV+  L ++ 
Sbjct: 348  MQEGSMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVL 392

Query: 1359 NAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITA 1535
             A+   +QEG H P+ E+LA RVG+TV +L  LL  TR+PLSMQQPVW+DQ TTFQE+TA
Sbjct: 393  EAKRSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTA 452

Query: 1536 DTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISK 1715
            DT +EIPD+SV KQ+MR+HVR LL  L+ +ER+I+RLR+GIEDG QKSLS+IG ++G+SK
Sbjct: 453  DTRIEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSK 512

Query: 1716 ERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            ERVRQLE++A+ KL++C+ SQ LEAY++L++
Sbjct: 513  ERVRQLESRALYKLKQCLGSQDLEAYADLIV 543


>ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
            gi|548832038|gb|ERM94834.1| hypothetical protein
            AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  506 bits (1304), Expect = e-140
 Identities = 280/557 (50%), Positives = 372/557 (66%), Gaps = 18/557 (3%)
 Frame = +3

Query: 189  PSSVPILH--EQATLAVTSTPTTSITRHFPTSVLLQEQRDEFR-PLLQIREDKTSQATLD 359
            P+S  IL   +QA L  T   TTS  RHFP SV+L EQRD+ R P    +EDK  Q  +D
Sbjct: 18   PNSPGILTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMD 77

Query: 360  RRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXXXXXXXXKGEKPLLSMTTQSIEL 539
            R +T+   S   E K+ + DQYLKDFER+                  K LLS+  Q   L
Sbjct: 78   RARTEVYASIGAETKNFEIDQYLKDFERQLLYWPALWYLSPSRIL-PKSLLSLPFQCKPL 136

Query: 540  DAD-------------KIVFMKPCDVLALAKEAVLASRQAASLAEESNLFGADFD-DSFP 677
            + D                 + P DVL LAK AV+AS+ AA+L E S+L   + D D  P
Sbjct: 137  ETDIESEIKESRKKQTNCSSLNPMDVLVLAKRAVMASKAAAALVEHSDLTVGNPDGDISP 196

Query: 678  RMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRTAAKHSKL-SEG 854
              G     I+ P +E+++                         + ++    K  K+ ++ 
Sbjct: 197  CSGLKEICIQVP-DEDMRTTIRSKRHLERQIKRRRVPKKLKDFSANFEIGKKPEKVKNKS 255

Query: 855  FDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREPTLIEWAK 1034
            FDPNDPLR FL G  TKQLLT KEE ELF +IQ+L R+EEVK++L+ QF  EPT++EWA+
Sbjct: 256  FDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWAR 315

Query: 1035 AVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGSIGLMKSI 1214
            A GMS  +L+S IH G +SREK+ YANFR+VVHVAK Y   GLS+QDL+Q+GS+GLMKS+
Sbjct: 316  AAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSL 375

Query: 1215 EKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQFVQEGHQ 1394
            EKFKP+  CRFS+YAYWWIRQAIRK++FQ SRT+RLPENV+  L +I+NAR  + QEGH+
Sbjct: 376  EKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHR 435

Query: 1395 PTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVEIPDLSVTK 1574
            PTNEELA+RVG+TV +LET+ V +++P+S+QQPVWSDQD T QEITAD +VE P+ +V K
Sbjct: 436  PTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAK 495

Query: 1575 QLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQLENQAMGK 1754
            QLMRRHVRNLLS+L+P+ER+++ LR+GI+  ++KSLS+IG +F +SKER+RQ+E++A+ K
Sbjct: 496  QLMRRHVRNLLSLLNPRERQVINLRFGIQGRERKSLSEIGGMFNVSKERIRQVESKALEK 555

Query: 1755 LRKCMSSQGLEAYSNLL 1805
            L+ C  +QGLE Y+ LL
Sbjct: 556  LKNCTQTQGLEVYAELL 572


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  506 bits (1303), Expect = e-140
 Identities = 292/579 (50%), Positives = 380/579 (65%), Gaps = 15/579 (2%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHF------RSSIPSSVPILHEQATLAVTSTPTTSITRHFPTS 278
            ME  R +  SSP F P+TH        SS  SSV +LHEQA+  V S  +    ++FP S
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60

Query: 279  VLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXX 455
            VLL EQRDE+RPLL + +EDKTSQA L  RQ D  V+  EE  +  +DQ + DF +    
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VTVHEENNTENADQVVLDFRKHLHH 119

Query: 456  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 635
                         GE    S T + + +D ++       + ++LAK+A+  S+Q +S+ E
Sbjct: 120  WPNLQYLLTSSQIGEVAA-SSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVE 178

Query: 636  ESNLFGADFDDSFPRMGHTSSSIENP-LEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETP 812
            +     AD DDS P  G  S+S+ +P +     V                       ET 
Sbjct: 179  DLKSIKAD-DDSIP-FGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETY 236

Query: 813  SWRTAAKHSKL------SEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEE 974
              R      KL      +E  D +DPLRLFL G ETKQLLT ++E +L +QIQ+L RLEE
Sbjct: 237  LARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEE 296

Query: 975  VKRKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYR 1154
            VK  LQSQF REPT+ EWA+  G++CR L+SQ+HSGNRSREK+  AN RMVVHVAK Y  
Sbjct: 297  VKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQG 356

Query: 1155 WGLSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENV 1334
             GLSLQDL+Q+GS+GLMKS+EKF P    RF +YA+WWIRQAIRKA+F+ SRT+RLPE V
Sbjct: 357  RGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKV 416

Query: 1335 FNTLRQIRNAREQFVQEGH-QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQD 1511
            F  L ++  A++ ++QEG+  PT EELA+RVG+TV +++ LL S R+P+SMQQ VW+DQ+
Sbjct: 417  FILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQN 476

Query: 1512 TTFQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQI 1691
            TTFQEITAD  VE  D++V KQLMRRHV N+LS+L PKERRI+RLRYG EDG+QKSLS+I
Sbjct: 477  TTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEI 536

Query: 1692 GLVFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            G +FG+SKERVRQLE +A+ KL+KC+  QGL+AY +LL+
Sbjct: 537  GDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  505 bits (1300), Expect = e-140
 Identities = 292/578 (50%), Positives = 379/578 (65%), Gaps = 14/578 (2%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFR-SSIP----SSVPILHEQATLAVTSTPTTSITRHFPTSV 281
            ME  R +  SSP F P+TH   +++P    +SV +L EQA+  V S  +    ++FP SV
Sbjct: 1    MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 282  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXX 458
            LLQEQRDE+RPLL + +EDKTSQA L  RQ D  V   EE  +  +DQ + DF +     
Sbjct: 61   LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHLHYW 119

Query: 459  XXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEE 638
                        GE    S T Q +  D D+      C+ ++LAK+A+  S+Q +S+ E+
Sbjct: 120  PHLQNLLASSQTGEISA-SSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED 178

Query: 639  SNLFGADFDDSFPRMGHTSSSIENP-LEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPS 815
                 AD DDS P  G  S+ + +P +     V                       ET  
Sbjct: 179  LKSIKAD-DDSIP-FGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYL 236

Query: 816  WRTAAKHSKL------SEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEV 977
             R    H KL      +E  D NDPL  FL G ETKQLLT ++E +L +QIQ+L RLEEV
Sbjct: 237  ARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEV 296

Query: 978  KRKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRW 1157
            K KLQSQF REPT+ EWA+ VG++CR L +Q+ SG+RSREK+  AN RMVVHVAK Y   
Sbjct: 297  KTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGR 356

Query: 1158 GLSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVF 1337
            GLSLQDL+Q+GS+GLMKS+EKF P    RF +YA+WWIRQAIRKA+F+ SRT+RLPE VF
Sbjct: 357  GLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVF 416

Query: 1338 NTLRQIRNAREQFVQEGH-QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDT 1514
              L ++  A++ ++QEG+  PT EELA+RVG+TV +++ LL S R+P+SMQQ VW+DQ+T
Sbjct: 417  ILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNT 476

Query: 1515 TFQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIG 1694
            TFQEITAD  VE  D+SV KQLMR+HV N+LSIL PKERRI+RLRYG EDG+QKSLS+IG
Sbjct: 477  TFQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIG 536

Query: 1695 LVFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
             +FG+SKERVRQLE +A+ KL+KC+  QGL+AY +LL+
Sbjct: 537  DIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  504 bits (1297), Expect = e-140
 Identities = 276/560 (49%), Positives = 374/560 (66%), Gaps = 8/560 (1%)
 Frame = +3

Query: 153  LFLPKTHFRSSIPSSVPILHEQATLAVTSTPTTSITRHFPTSVLLQEQRDEFRPLLQIRE 332
            +F     F SS   SV +LHEQA  AV S  ++S  +HFPTSVLLQEQRDE++P L +  
Sbjct: 1    MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHN 60

Query: 333  DKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXXXXXXXXKGEKPLL 512
             +T   TL+ RQ D   S  E+  +  +DQ + DF ++                      
Sbjct: 61   KET---TLNTRQMDM-TSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPT-RGIAA 115

Query: 513  SMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFGADFDDSFPRMGHT 692
            S   Q +++D++      P + ++LA++A+ AS+QA S   E  L   D DD  P  G  
Sbjct: 116  SSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPS-GLA 174

Query: 693  SSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXE-------TPSWRTAAKHSKLSE 851
            S+S+ +   ++ KV                       E       +   R      KL E
Sbjct: 175  STSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKE 234

Query: 852  GFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREPTLIEWA 1031
            G+DPNDPLRLFLSG E++QLLT +EE +L  Q+Q+L+RLEEVK +LQ+Q  REPTL EWA
Sbjct: 235  GYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWA 294

Query: 1032 KAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGSIGLMKS 1211
             AVG SC  L++Q+H  NRS+EK+ +AN RMVVH+AK Y   GLSLQDL Q+GS GLMKS
Sbjct: 295  DAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKS 354

Query: 1212 IEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQFVQEGH 1391
            IEKFKP+  CRF +YAYWWIR A+RKAIF  SRT+RLPEN++  L ++  A++ ++QEG+
Sbjct: 355  IEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGN 414

Query: 1392 -QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVEIPDLSV 1568
              PT EELA++VG+T+ +++ LL ++R P+SMQQ VW+DQDTTFQEITAD+ +EIPD++V
Sbjct: 415  LHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTV 474

Query: 1569 TKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQLENQAM 1748
            +KQLMR HV NLL+ILSPKER I+RLR+GIEDG++K+LS IG VFG++KERVRQLE++A+
Sbjct: 475  SKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRAL 534

Query: 1749 GKLRKCMSSQGLEAYSNLLI 1808
             KLR+C+ SQGL+AY++LL+
Sbjct: 535  LKLRQCLESQGLDAYTDLLV 554


>ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|312282671|dbj|BAJ34201.1| unnamed protein product
            [Thellungiella halophila] gi|557112045|gb|ESQ52329.1|
            hypothetical protein EUTSA_v10016472mg [Eutrema
            salsugineum]
          Length = 547

 Score =  502 bits (1292), Expect = e-139
 Identities = 287/569 (50%), Positives = 382/569 (67%), Gaps = 5/569 (0%)
 Frame = +3

Query: 117  MEVGRNLLYSSPLFLPKTHFRS--SIPSSVPILHEQ-ATLAVTSTPTTSITRHFPTSVLL 287
            ME  RNL+ SSP F  KTH +S  S PSSV +LHEQ AT  V S   TS++RHFP SVL 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASVLS 60

Query: 288  QEQRDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXX 464
            QE R+E +PL   +RED+TSQ TL+RRQ D  VS  E++K          FE++      
Sbjct: 61   QELREESKPLSHALREDRTSQLTLERRQFDELVSSREDEK----------FEQQLLHSAG 110

Query: 465  XXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESN 644
                       EK L ++ + S + D         CD++ALA++A+ AS+QAA L E S 
Sbjct: 111  LWNLLISPLTTEKQLPAVVSPSADADL--------CDLVALAQKALSASKQAALLVENSE 162

Query: 645  LFGADFDDSFPRMGHTSSSIENPLEEEIKVXXXXXXXXXXXXXXXXXXXXXXXETPSWRT 824
               AD  D+      TSSS+  P +  I                              + 
Sbjct: 163  ---ADPPDNPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYVPQKI 219

Query: 825  AAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFD 1004
             AK  K+ +GFD +D L+LFL G ETKQLLTAKEE EL A IQ L +LE+VK KL+SQ  
Sbjct: 220  NAK-KKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNG 278

Query: 1005 REPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQ 1184
             EPT+ EWA+A+G+S   LKS+IH G  SREK+  AN R+VVH+AKQY   GL+ QDL+Q
Sbjct: 279  CEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338

Query: 1185 DGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNA 1364
            +GS+GLMKS+EKFKPQ  CRF++YAYWWIRQ+IRK+IFQ SRT+RLPENV+  L ++  A
Sbjct: 339  EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 398

Query: 1365 REQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADT 1541
            R+  +Q+G ++P+ E+LA  VG++  +L+ LL +TR PLSMQQP+WSDQDTTFQE+T D+
Sbjct: 399  RKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDS 458

Query: 1542 EVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKER 1721
             +E P +SV KQLMR HVRNLL++LSPKE+RI++LR+GI+ G+Q+SLS+IG ++G+SKER
Sbjct: 459  GIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 518

Query: 1722 VRQLENQAMGKLRKCMSSQGLEAYSNLLI 1808
            VRQLE++A+ +L++ MSS GL AY++LL+
Sbjct: 519  VRQLESRALYRLKQNMSSHGLNAYADLLV 547