BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00003284
         (2119 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   543   e-152
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   540   e-150
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   503   e-139
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   500   e-139
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   500   e-138
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   497   e-137
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   493   e-136
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   485   e-134
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   477   e-132
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   473   e-130
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      457   e-125
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   453   e-124
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   448   e-123
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   437   e-120
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...   434   e-119
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   432   e-118
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   427   e-117
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   427   e-117
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   424   e-116
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   423   e-115

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  543 bits (1400), Expect = e-152
 Identities = 288/533 (54%), Positives = 367/533 (68%), Gaps = 6/533 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            +SSV+GKEAS++S R S  SV  E+ E LYKD  K +      LQ  EN     E MKMK
Sbjct: 29   TSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMK 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
            IG+ SH  L+  ++ +   I +D S S   LQ +K S+FS L+EN++ +EE+F D+++V+
Sbjct: 89   IGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVR 148

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LE+DI++QLG+LGA+KLF +CLSRTL           P TE  R+   NG +DD +  ++
Sbjct: 149  LERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAP-TEHIRECQTNGTVDDHLDKVV 207

Query: 552  VXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRRENPS------NSMTRRLIIAK 713
            V              ALE             TI K P R + S      NS  +RL+ AK
Sbjct: 208  VRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAK 267

Query: 714  KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 893
             E++MS GVK  ANLERIR +LE E G V S S WAEAAGVD+KVLQQ+L FGWYCRD+L
Sbjct: 268  NEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDEL 327

Query: 894  LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 1073
            LRST SLV YIARNYR +G++ ED+LQAGN+GVLQGAERFDHT+GYRFSTY+QYWIRKSM
Sbjct: 328  LRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSM 387

Query: 1074 STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 1253
            STLVARH+RG+ IP +LN  + QI+KAR++LY  HGRYP+D+EI++FTG+SLAKIR A  
Sbjct: 388  STLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGN 447

Query: 1254 CPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVL 1433
            C R+VGS DQ   D      +EFT D SIK+PEE  M Q  RKDI+ LL+GL PRERQ+L
Sbjct: 448  CLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQIL 507

Query: 1434 ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            +LRYG  + + KSLEEIGR F  +KEWIRK+EK+AL  +R EE+ +NL HY++
Sbjct: 508  VLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 560


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  540 bits (1390), Expect = e-150
 Identities = 285/530 (53%), Positives = 364/530 (68%), Gaps = 6/530 (1%)
 Frame = +3

Query: 21   VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKIGR 200
            ++GKEAS++S R S  SV  E+ E LYKD  K +      LQ  EN     E MKMKIG+
Sbjct: 82   IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141

Query: 201  GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLEK 380
             SH  L+  ++ +   I +D S S   LQ +K S+FS L+EN++ +EE+F D+++V+LE+
Sbjct: 142  CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 381  DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 560
            DI++QLG+LGA+KLF +CLSRTL           P TE  R+   NG +DD +  ++V  
Sbjct: 202  DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAP-TEHIRECQTNGTVDDHLDKVVVRS 260

Query: 561  XXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRRENPS------NSMTRRLIIAKKES 722
                        ALE             TI K P R + S      NS  +RL+ AK E+
Sbjct: 261  GKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEA 320

Query: 723  KMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRS 902
            +MS GVK  ANLERIR +LE E G V S S WAEAAGVD+KVLQQ+L FGWYCRD+LLRS
Sbjct: 321  EMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRS 380

Query: 903  TRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTL 1082
            T SLV YIARNYR +G++ ED+LQAGN+GVLQGAERFDHT+GYRFSTY+QYWIRKSMSTL
Sbjct: 381  THSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440

Query: 1083 VARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPR 1262
            VARH+RG+ IP +LN  + QI+KAR++LY  HGRYP+D+EI++FTG+SLAKIR A  C R
Sbjct: 441  VARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLR 500

Query: 1263 IVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILR 1442
            +VGS DQ   D      +EFT D SIK+PEE  M Q  RKDI+ LL+GL PRERQ+L+LR
Sbjct: 501  VVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLR 560

Query: 1443 YGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            YG  + + KSLEEIGR F  +KEWIRK+EK+AL  +R EE+ +NL HY++
Sbjct: 561  YGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 610


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  503 bits (1294), Expect = e-139
 Identities = 272/537 (50%), Positives = 367/537 (68%), Gaps = 10/537 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            SS VRG+EA+    R+S LSVI EE ++ ++D LK Y      +Q +EN+    E  K+ 
Sbjct: 30   SSFVRGREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSYA-VQTVENEHSQGEGFKVN 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
             G+ SH  L N I D  VS+++D   S P     +TSRFS L+EN+  +E+ F D+D  K
Sbjct: 89   FGKRSHFGL-NIIGDAEVSLKEDIFVS-PSSTKERTSRFSLLLENLNILEQSFADSDASK 146

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LE+DIL+QLGKLGA+KLF+ CL+RTL      L      TE+  +  ING   +    ++
Sbjct: 147  LEEDILLQLGKLGALKLFNTCLTRTLETTN-VLEVSDVHTEIIGECNINGTSINNQIKVV 205

Query: 552  VXXXXXXXXXXXXXXA----------LEXXXXXXXXXXXXXTISKVPRRENPSNSMTRRL 701
            V              A          L              T+S     +  S S +RRL
Sbjct: 206  VHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSS---GKKASKSKSRRL 262

Query: 702  IIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYC 881
            IIA+ E++M+ G+K  A+LE+IRT+LE ET RV+S SCWAEAAG+D KVLQQ+L FGWYC
Sbjct: 263  IIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYC 322

Query: 882  RDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWI 1061
            RD+L++STRSLV Y ARNYR  GI+LEDLLQAGN+GVL+GAERFDHTRGYRFSTY+QYWI
Sbjct: 323  RDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWI 382

Query: 1062 RKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIR 1241
            RKSMS +V+R +RGI IP +L+  + QI+KAR++L   +G+YP+DDEI+++TG+SLAKI 
Sbjct: 383  RKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIE 442

Query: 1242 LACKCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRE 1421
             A +C R+VGSIDQ++G++L+ K++EF  D S+++PEE+VM QHM +D++ LL+ L  RE
Sbjct: 443  SASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRE 502

Query: 1422 RQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            RQVLILR+GL D + KSLEEIGR F  +KEW+R++EK  +T++R EE  RNL HY+N
Sbjct: 503  RQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  500 bits (1288), Expect = e-139
 Identities = 258/531 (48%), Positives = 365/531 (68%), Gaps = 5/531 (0%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S S RG EAS    R+S LSV+ EE ++L K S K++       Q +EN     E +KM 
Sbjct: 29   SFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFACSSAA-QNVENDCLQMERLKMN 87

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
            + + SH ++ N + +  VS++++ STS+  L+   TSR S L++N++ +E++  D D +K
Sbjct: 88   VDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKLVADLDALK 147

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LE+DIL+QLG+LGA++ F+ CLSRTL        + +P TE   +S  +G + D  G  +
Sbjct: 148  LERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVP-TENTGESKTDGMLGDLTGKTV 206

Query: 552  VXXXXXXXXXXXXXXAL-----EXXXXXXXXXXXXXTISKVPRRENPSNSMTRRLIIAKK 716
            V              A      +              + K    +  S+S +RR +IA+ 
Sbjct: 207  VRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSSSSSRRSLIARN 266

Query: 717  ESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLL 896
            E+KM+ GVK A++LERIRT+LE ETG+V+S SCWAEA G+D+KVLQQ+L FGWYCRD+L+
Sbjct: 267  EAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELI 326

Query: 897  RSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMS 1076
            ++T SLV YIARNYR +GI++EDL+QAGN+G+LQGAERFD TRGYRFSTY+QYWIRKSM 
Sbjct: 327  KNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSML 386

Query: 1077 TLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKC 1256
             +V RH+RGI IP +L+  +N+I+KAR++L N HGRYP+D E+++FTG+SLAKI  A KC
Sbjct: 387  KIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKC 446

Query: 1257 PRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLI 1436
             R+V S+DQ++G+    K+ EF  D SI+ PEE VM QHMR++IY+LL+GL  RE+QV++
Sbjct: 447  LRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMV 506

Query: 1437 LRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYL 1589
            LRYG +D + KSL EIGR+F+ +KE +RKIEK  + K+R E ++RNLS Y+
Sbjct: 507  LRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRNLSRYM 557


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  500 bits (1287), Expect = e-138
 Identities = 271/519 (52%), Positives = 356/519 (68%), Gaps = 11/519 (2%)
 Frame = +3

Query: 69   SVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKIGRGS--HRTLYNPIDDTS 242
            S +P    +  KD LKAY       Q +E    + EEMK+ IG+GS  H      ID T 
Sbjct: 335  SRLPSSGVLSLKDPLKAYASSAAP-QTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTH 393

Query: 243  VSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLEKDILIQLGKLGAIKL 422
              I  D S+S    Q  K S +S LMEN++ +EE F D+DV+ LE++IL+QLG+ GA+KL
Sbjct: 394  ELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKL 453

Query: 423  FHVCLSRTLGLKEPTLSTPIPITELPRDSP---INGPIDDKVGNIIVXXXXXXXXXXXXX 593
            F+ CLSRTL       S  + ++++P +S    +N  +D +  NI+V             
Sbjct: 454  FNTCLSRTL-----KASNILDLSDVPANSGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRE 508

Query: 594  XALEXXXXXXXXXXXXXTIS------KVPRRENPSNSMTRRLIIAKKESKMSIGVKEAAN 755
             ALE             T+       KV   +  S+S +RRL IA+ E++MS GVK  AN
Sbjct: 509  RALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVAN 568

Query: 756  LERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSLVFYIARN 935
            LERIRT+LE ETGR  S SCWAEAAGV EKVLQQ L FGWYCRD+LLRSTRSLV Y ARN
Sbjct: 569  LERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARN 628

Query: 936  YRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARHSRGIHIP 1115
            YR LGI+ EDL+QAG++GVLQGAERFDHTRGYRFSTY+Q+WIRKS+S +VARH+RGI +P
Sbjct: 629  YRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVP 688

Query: 1116 VSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRIVGSIDQRMGD 1295
             +L+  + QI+KAR++L   HG+YP++D I++FTG+SLAKIR A KC R+VGSIDQ++GD
Sbjct: 689  CTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGD 748

Query: 1296 NLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILRYGLQDGRSKSL 1475
             ++ K++EF  D S+++PE+ VM QHM++DI++LL GL  RERQV++LRYGL+    KSL
Sbjct: 749  CMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSL 808

Query: 1476 EEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            EEIGR+F  +KEWIR+IE  A+ K+R +E  RNLSHYL+
Sbjct: 809  EEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  497 bits (1279), Expect = e-137
 Identities = 269/533 (50%), Positives = 358/533 (67%), Gaps = 6/533 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S+SVRG+E S+ S R+S LSVI EE E   KD LK Y       QI+E+   + EE+K  
Sbjct: 30   STSVRGREGSFNSARLSFLSVISEEGEASSKDPLKVYTFPSASPQILEDGVSELEEVKT- 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
                + R +     D  + + +    S   L+    S FS L++N+  +EE F  +DV+K
Sbjct: 89   ----AFRRVPKSFSDNQMPVAEGKFISSKGLEACTASHFSLLLQNLNVLEETFATSDVLK 144

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LEK+IL+QL +LGA+KLF +CLSRTL        + IP   +  +  +    D+ VG II
Sbjct: 145  LEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPV-EEGKMERKEDNNVGEII 203

Query: 552  VXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRR------ENPSNSMTRRLIIAK 713
            V              +               TI K  ++      +  SN  +RRL I+K
Sbjct: 204  VRSGKKEERRSRKRTS--DNAIVSSNSLPPKTIWKGLKKPTLSSGKRASNYRSRRLTISK 261

Query: 714  KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 893
             E++MSIGVK  A+LERI+ +LE ETG+V +  CWAEAAGV EKVL Q L FGWYC+D+L
Sbjct: 262  NEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDEL 321

Query: 894  LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 1073
            +RSTRSLV Y+ARNYR LG++L+DL+QAGN+G+LQGAERFDH+RGYRFSTY+QYWIRKSM
Sbjct: 322  IRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSM 381

Query: 1074 STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 1253
            S LVA+H+RG+ IP +L+  +NQI+KAR++ YN H +YP+D+EI++ TG+SLA+IR A  
Sbjct: 382  SRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSAST 441

Query: 1254 CPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVL 1433
            C R+VGS+D +M ++    +MEFT D S+K+PEE VM QHM+KDI++LL+GL  RERQVL
Sbjct: 442  CLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVL 501

Query: 1434 ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            +LRYGL +   KSLEEIGR+F  +KEWIRKIEK AL K+R EE  + LSHYLN
Sbjct: 502  VLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLSHYLN 554


>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
            gi|548857444|gb|ERN15250.1| hypothetical protein
            AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  493 bits (1270), Expect = e-136
 Identities = 271/533 (50%), Positives = 352/533 (66%), Gaps = 8/533 (1%)
 Frame = +3

Query: 18   SVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKIG 197
            +V+ K+ S ES + S LSVIPEE+E L  D  K +      +Q   +     EEMKM I 
Sbjct: 6    AVKSKQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNIN 65

Query: 198  RGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLE 377
            +         ID   + I +DT ++   L       FS L EN+EKIE I VD+   +LE
Sbjct: 66   KNKPDASLYVIDKAELPIAEDTFSNVAGLP-----HFSFLFENLEKIEGIIVDSGNARLE 120

Query: 378  KDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVX 557
            ++IL+ + +LGA+KLFH  LSRTL  K+P +   + +T    +  +  P+D++    IV 
Sbjct: 121  REILLHIERLGALKLFHAFLSRTL--KDPKI---LDVTGTCPEHAMVQPMDEQADGYIVS 175

Query: 558  XXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRREN--------PSNSMTRRLIIAK 713
                         AL+              + K  +  N        P NS +R  + A+
Sbjct: 176  SGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLRAQ 235

Query: 714  KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 893
             E +MS GV+E A LE+IR +LE   GR  SFS WAEAAG++EKVL+Q+LHFGW+CRDKL
Sbjct: 236  SEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRDKL 295

Query: 894  LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 1073
            LRSTR LV Y+A++YR  GI  EDLLQAG++GVLQGAERFDHTRGYRFSTY+QYWIRKS+
Sbjct: 296  LRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRKSL 355

Query: 1074 STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 1253
            S LVARHSRG+ IP++LN V+NQ  KA+R+L+ +HGR+P + EI+ FTG+SL  +RLA K
Sbjct: 356  SALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLANK 415

Query: 1254 CPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVL 1433
            C R+ GSIDQR+GDN    +ME T+D  I+TPE+MVM QHMR+ I+E+L  L PRE+QVL
Sbjct: 416  CLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQVL 475

Query: 1434 ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            +LRYGL DGR KSLEEIGR++  TKEWIRKIEK AL KVRKEEVQ NL+ +LN
Sbjct: 476  MLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFLN 528


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  485 bits (1248), Expect = e-134
 Identities = 265/529 (50%), Positives = 356/529 (67%), Gaps = 3/529 (0%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            SSSVRG+E S+ S  +S LSVI EE E   KD LK Y       Q++++   + EE KM 
Sbjct: 30   SSSVRGREGSFSSAGLSFLSVISEECETSSKDPLKVYTCPSASPQLLDDGLSEMEE-KMN 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
              R S     N IDD   S               +TS ++ L++N+  +EE F D+ V K
Sbjct: 89   PRRMSKSGSANMIDDKEYSFMSSAGL--------RTSHYTLLLQNLNVLEETFADSGVSK 140

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LEK+IL+QLG+LGA+KLF +CLSRTL       S+ + ++++P +       + K  NI+
Sbjct: 141  LEKEILLQLGRLGALKLFEICLSRTL-----KTSSFLDLSDIPTEPIEKHKTERK--NIV 193

Query: 552  VXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRREN---PSNSMTRRLIIAKKES 722
                                              K P   +    SNS +RRL++AK E+
Sbjct: 194  RSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRASNSRSRRLMMAKNEA 253

Query: 723  KMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRS 902
            +MS+GVK  A+LER++ +LE ETG+V +  CWAEAAGVDEKVLQQ+LHFGWYC+D+L+RS
Sbjct: 254  EMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRS 313

Query: 903  TRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTL 1082
            TRSLV Y+ARNYR LG++L+DLLQAGN+G+LQGAERFD +RGYRFSTY+QYWIRKSMS L
Sbjct: 314  TRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRL 373

Query: 1083 VARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPR 1262
            VA+H+RGI IP +L+  +N+I+KAR++ YN H +YP+D+EI++ TG+SLAKI  A +C R
Sbjct: 374  VAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLR 433

Query: 1263 IVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILR 1442
            +VGS+D ++ +  +  +MEFT D +++TPEE VM QHM+ DI+ LL+GL  RE++VL LR
Sbjct: 434  VVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALR 493

Query: 1443 YGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYL 1589
            YGL     KSLEEIGR+F  +KEWIRKIEK+ALTK+R EE  +NLSHYL
Sbjct: 494  YGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNLSHYL 542


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  477 bits (1228), Expect = e-132
 Identities = 256/533 (48%), Positives = 354/533 (66%), Gaps = 7/533 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S+SVRG+E S+ S R+S LS I E+S   ++D +KAY       Q +EN   + EE++ K
Sbjct: 29   STSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQK 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
                           TS   QD +S S           F  LMEN++ +E  F D+D ++
Sbjct: 89   --------------STSCIGQDASSRS----------DFRLLMENLDVLESTFADSDALR 124

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITEL-PRDSPINGPIDDKVGNI 548
            LE++IL QLGKLGA+KLF+  LSR +       S  + ++++   +  +N   D  +G I
Sbjct: 125  LEREILQQLGKLGALKLFNSHLSRIV-----KTSNVLDLSDVHTEEQKMNDSRDYHMGKI 179

Query: 549  IVXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRR------ENPSNSMTRRLIIA 710
            +V                E              + +  ++      E   NS  RRL+IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIA 239

Query: 711  KKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDK 890
            + E++MS GV+  ANLERI+T+LE E+G+  S +CWA+AAGV E+VL+Q L FGWYCR++
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 891  LLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKS 1070
            L++STR LV ++ARNYR LGI   DLLQAGNVGVLQGAERFDHTRGY+FSTY+QYWIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1071 MSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLAC 1250
            +S +VARH+RGI IP  LN  +++I+KAR++L N HG+YP D EI+++TG+SLA+IR A 
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 1251 KCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQV 1430
            +C RIVGSIDQ++GD L+ K++EF  D+S+K+P+E+VM QHM+KD++ +L+ L  RERQV
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479

Query: 1431 LILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYL 1589
            L+LRYGL D R KSLEEIG++F  +KEWIRK+EK A+TK+R  E  R+LSH+L
Sbjct: 480  LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  473 bits (1218), Expect = e-130
 Identities = 254/533 (47%), Positives = 353/533 (66%), Gaps = 7/533 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S+SVRG+E S+ S R+S LS I E+S   ++D +KAY       Q +EN   + EE++ K
Sbjct: 29   STSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQK 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
                           TS   QD +S S           F  LMEN++ +E  F D+D ++
Sbjct: 89   --------------STSCIGQDASSRS----------DFRLLMENLDVLESTFADSDALR 124

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITEL-PRDSPINGPIDDKVGNI 548
            LE++IL QLGKLGA+KLF+  LSR +       S  + ++++   +  ++   D  +G I
Sbjct: 125  LEREILQQLGKLGALKLFNSHLSRIV-----KTSNVLDLSDVHTEEQKMDDSRDYHMGKI 179

Query: 549  IVXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRR------ENPSNSMTRRLIIA 710
            +V                E              + +  ++      E   NS  RRL+IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIFSAERALNSRGRRLMIA 239

Query: 711  KKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDK 890
            + E++MS GV+  ANLERI+T+LE E+G+    +CWA+AAGV E+VL+Q L FGWYCR++
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 891  LLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKS 1070
            L++STR LV ++ARNYR LGI   DLLQAGNVGVLQGAERFDHTRGY+FSTY+QYWIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1071 MSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLAC 1250
            +S +VARH+RGI IP  LN  +++I+KAR++L N HG+YP D EI+++TG+SLA+IR A 
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 1251 KCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQV 1430
            +C RIVGSIDQ++GD L+ K++EF  D+S+K+P+E+VM QHM+KD++ +L+ L  RERQV
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479

Query: 1431 LILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYL 1589
            L+LRYGL D R KSLEEIG++F  +KEWIRK+EK A+TK+R  E  R+LSH+L
Sbjct: 480  LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  457 bits (1175), Expect = e-125
 Identities = 247/532 (46%), Positives = 348/532 (65%), Gaps = 5/532 (0%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S+S RGKE  + S R+S+L++  +ESE L KD+L+ +         +EN   D   ++  
Sbjct: 30   STSFRGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVEN---DYSNLETT 86

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
            I + S + L   I DT V    D S     +Q    S F +LM NI  +E    D++++K
Sbjct: 87   ISKRSCKDL---ISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLK 143

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LEKDIL+QLG+LGA++LFH CLSR + + +     P  ITE   D   N   D+++   +
Sbjct: 144  LEKDILVQLGRLGALQLFHACLSRIIDMSD----LPGLITE---DGKANVRKDNELKKKL 196

Query: 552  VXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISK-----VPRRENPSNSMTRRLIIAKK 716
            V               L+             +I       V      + +  RR IIAK 
Sbjct: 197  VFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKN 256

Query: 717  ESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLL 896
            E++MS G+K  A LE+++ +LE ETG+ +S +CWAEAAG+DEKVLQ  LHFGWYCRD+LL
Sbjct: 257  EAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELL 316

Query: 897  RSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMS 1076
            +S RSLV Y++R YR LG++ EDL+QAGN+G+LQGAERFDHTRGY+FSTY+QYWIRK+MS
Sbjct: 317  KSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMS 376

Query: 1077 TLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKC 1256
             LV+RH RGI +P +L++ +N+++KAR+ L    G++P+D E+S+ TG+SL KI+ A  C
Sbjct: 377  QLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNC 436

Query: 1257 PRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLI 1436
             RIVGS+DQ++G  +++K++E T D +++ PE+ VM QHMR D+++LLQ L P+ER+VLI
Sbjct: 437  LRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLI 496

Query: 1437 LRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
             RYGL +G   SL E+G+VF  +KEWIRK+EK ALTK+R E+ Q NL HYLN
Sbjct: 497  HRYGL-EGHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYLN 547


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
            gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
            polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  453 bits (1165), Expect = e-124
 Identities = 252/529 (47%), Positives = 346/529 (65%), Gaps = 6/529 (1%)
 Frame = +3

Query: 24   RGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKIGRG 203
            +G+EA++ S R+S  S I EE E + +++LK Y       Q   N   + EE++M  G  
Sbjct: 33   KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAK 92

Query: 204  SHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLEKD 383
            S   ++  I  T  S  +D  +S   L   K S F  LMEN++ +EE F ++ ++ LE+D
Sbjct: 93   SLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERD 152

Query: 384  ILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXXX 563
            I++QL KLGA++ F+ CLSRTL       S+ +PI E   D  +N   +D+  N+ V   
Sbjct: 153  IVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPI-EGGEDHNVNQKTNDQNDNVTVYSA 211

Query: 564  XXXXXXXXXXXALEXXXXXXXXXXXXXTI------SKVPRRENPSNSMTRRLIIAKKESK 725
                       A++              +      S V  R+  SNS  RRLI+A  E++
Sbjct: 212  KKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAE 271

Query: 726  MSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRST 905
            MS GVK  ANLERIR +LE E+GR+ S SCWAEAA VD K LQ++L FG +CRD+LLRST
Sbjct: 272  MSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRST 331

Query: 906  RSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLV 1085
             SLV ++A+ YR  G+ +EDL+QAG +GVLQG ERFD  RG+R STYIQYWIRKSMS +V
Sbjct: 332  NSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVV 391

Query: 1086 ARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKCPRI 1265
            AR+SRGI IP SL   +NQI+KAR+ L N  GR  +DD+I+R TG+ LAK+R+A  C ++
Sbjct: 392  ARNSRGIQIPRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKV 450

Query: 1266 VGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILRY 1445
            VGS DQ+MGD +++K+MEFT+D SI++PEE V  + M+KDI+ +LQ L+ RERQVL+LRY
Sbjct: 451  VGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLVLRY 510

Query: 1446 GLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            GL D   KSLEEIG++   +KEW+RKIEK A+TK++ EE  ++LSHYL+
Sbjct: 511  GLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 559


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  448 bits (1153), Expect = e-123
 Identities = 246/535 (45%), Positives = 341/535 (63%), Gaps = 10/535 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S S +G+EA Y+ P  S+   I  + E  + D  +         Q+  + +    E+K +
Sbjct: 27   SHSFKGREALYD-PARSLKPFITGDCEPSHSDPFRVQTCLSDP-QLWTSDTSVTTEIKTR 84

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
             GRGS   +Y  I    + I  D       L   K+  FS LM+N++ +E +F D+++ +
Sbjct: 85   NGRGSPSNVYGDIGSHKIGISPDGEKP-TYLNTTKSLHFSLLMKNLDLLENMFADSEMSR 143

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGN-- 545
            LE+DIL+QL KLGA++ FH CLSRT        ST   + ++PR+       DD VGN  
Sbjct: 144  LERDILVQLEKLGALEFFHTCLSRT-----HHSSTFPKVLDVPRELIKEVEKDDLVGNAI 198

Query: 546  --IIVXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTIS------KVPRRENPSNSMTRRL 701
              ++V              A                I       K    +    S  +R 
Sbjct: 199  DKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQ 258

Query: 702  IIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYC 881
             IAK E++MS GVK  A LERIR+ LE ETGRV +FS WAEAAG+++K LQQRLHFGWYC
Sbjct: 259  KIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYC 318

Query: 882  RDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWI 1061
            RD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+GVLQGA RFDHTRGY+FSTY+QYWI
Sbjct: 319  RDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWI 378

Query: 1062 RKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIR 1241
            RKS+S LVA+H+RG+ IP ++  V+NQI KAR++L   HG++P DDEI++FTG+S A+I 
Sbjct: 379  RKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIA 438

Query: 1242 LACKCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRE 1421
            +A KC R+VGSIDQ++GD +S K +E T DKSI +PEE VM Q +  ++Y LL+ L P+E
Sbjct: 439  MASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLLESLDPKE 498

Query: 1422 RQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHY 1586
            +QV+  R+GL+  + KSLEEIGR++  +KEWIR+IE+ ALTK+R  +  ++++HY
Sbjct: 499  QQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHITHY 553


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  437 bits (1125), Expect = e-120
 Identities = 240/535 (44%), Positives = 340/535 (63%), Gaps = 10/535 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            S S +G+E  Y+ P  S+   I  + E  + D  +         Q+  + +    E K +
Sbjct: 27   SHSFKGRETLYD-PARSLKPFINGDCEPSHSDPFRVQTCLSDP-QLWTSDASVTTETKTR 84

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
             GRGS   +Y  I    +  +  T      L   K+  FS LM+N++ +E +F D+++ +
Sbjct: 85   NGRGSPSNVYGDIGSYKIDGEKPT-----YLNTTKSLHFSLLMKNLDLLENMFADSEMSR 139

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGN-- 545
            LE+DIL+QL KLGA++ FH CLSRT      + S P  + ++PR+       DD VGN  
Sbjct: 140  LERDILVQLEKLGALEFFHTCLSRT----HHSSSFP-KVLDVPRELIKEVEKDDLVGNAM 194

Query: 546  --IIVXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTIS------KVPRRENPSNSMTRRL 701
              ++V              A                I       K    +    S T+R 
Sbjct: 195  DKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQLKFYSGKRTHASRTKRQ 254

Query: 702  IIAKKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYC 881
             IAK E++MS GVK  A LERIR+ LE ETG+V +FS WA+AAG+++K LQQ LHFGWYC
Sbjct: 255  KIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYC 314

Query: 882  RDKLLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWI 1061
            RD+LL+STRSLV Y+ARNYR LG++ EDL+QAGN+GVLQGA RFDHTRGY+FSTY+QYWI
Sbjct: 315  RDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWI 374

Query: 1062 RKSMSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIR 1241
            RKS+S LVA+H+RG+ IP ++  V+NQI KAR++L   HG++P DDEI++FTG+S A+I 
Sbjct: 375  RKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIA 434

Query: 1242 LACKCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRE 1421
            +A KC R+VGSIDQ++GD ++ K +E T DKS+ +PEE VM Q +  ++Y LL+ L P+E
Sbjct: 435  MASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYALLESLDPKE 494

Query: 1422 RQVLILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHY 1586
            +QV+  R+GL+  + KSLEEIGR++  +KEWIR+IE+ ALTK+R  +  ++++HY
Sbjct: 495  QQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHITHY 549


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score =  434 bits (1116), Expect = e-119
 Identities = 238/533 (44%), Positives = 344/533 (64%), Gaps = 6/533 (1%)
 Frame = +3

Query: 12   SSSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMK 191
            SSS  G+E  +   R+S+LS + EE E L KD  K +      L++ E      E  K+ 
Sbjct: 29   SSSAGGREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVN 88

Query: 192  IGRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVK 371
             G+ S  +++  ID+T +   +                F  LMEN+  +EE F D++ ++
Sbjct: 89   KGKRSLSSVHEIIDNTQLPFGEP--------------HFGLLMENLGILEETFADSEAMR 134

Query: 372  LEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNII 551
            LEKDI+++L KLGA++LF+VCL+R+ G    +  T + + E  ++   N  +D+  G ++
Sbjct: 135  LEKDIVLKLEKLGALELFNVCLTRSFGTSTESNCTDV-VLEHVKEKKRNFKVDNYTGKVV 193

Query: 552  VXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRR------ENPSNSMTRRLIIAK 713
            V              ++                 + P R      +  SN+  RR +IA+
Sbjct: 194  VQSKRKENRTRRKQASVAITTSFQSLPLEDNN-QEGPLRLPASLVKRVSNTNNRRAVIAQ 252

Query: 714  KESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKL 893
            +E +MS GVK  A LE+++T++E +T + +S S WAEA+GVDE VLQ++L+ G+YCRD+L
Sbjct: 253  REVEMSKGVKVLAELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDEL 312

Query: 894  LRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSM 1073
            +RSTRSLV Y AR YR +GI+LEDLLQ G +GVLQGAERFD TRGYRFSTY+QYWIRKSM
Sbjct: 313  IRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSM 372

Query: 1074 STLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACK 1253
            S +VAR++RGI IP S+N  ++QI+KAR+ L +   +YP+D EI++ TG+SL +IR A  
Sbjct: 373  SRMVARYARGITIPWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASH 432

Query: 1254 CPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVL 1433
            C RIV S++Q+MGD   I++M + +D SI++PEE VM QH+RKDI+++LQ L  RERQ+L
Sbjct: 433  CMRIVSSMNQKMGDR-GIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQIL 491

Query: 1434 ILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            ILR+GL D + KSLE IG+++K +KEWIRKIEK ALTK+R E     L++YL+
Sbjct: 492  ILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYYLD 544


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  432 bits (1110), Expect = e-118
 Identities = 242/534 (45%), Positives = 342/534 (64%), Gaps = 8/534 (1%)
 Frame = +3

Query: 15   SSVRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKI 194
            SS   +E  +   R+S  S   EE E L KD  + +      L+ +EN S  +EE ++  
Sbjct: 35   SSAGVRETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNK 94

Query: 195  GRGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKL 374
            G+ S  +++  ID+T +    + ST     +  +   F  LMEN+  +EE FVD++ ++L
Sbjct: 95   GKRSLSSVHKMIDNTQMPF-GEVSTVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRL 153

Query: 375  EKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIV 554
            EK I++QLGKLGA++LF+VCLSR+LG            T L   S     +DD    ++V
Sbjct: 154  EKAIILQLGKLGALELFNVCLSRSLG------------TSLV--SNYADKVDDYKDKVVV 199

Query: 555  XXXXXXXXXXXXXXAL--------EXXXXXXXXXXXXXTISKVPRRENPSNSMTRRLIIA 710
                                                  + S V R  N  N   +R+++A
Sbjct: 200  QSSKKKENKTRRKREFVSTAVSSQSLTLKANQEDLLGFSASLVKRAPNTKN---KRILVA 256

Query: 711  KKESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDK 890
            K+E++MS GVK  A LE+IRT++E +T RV S S WAEA+GVDEKVLQ+ LH G+YC+D+
Sbjct: 257  KREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDE 316

Query: 891  LLRSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKS 1070
            L+RSTRSLV Y+AR YR +GI+L+DLLQAG VGVLQGAERFD TRGY+FSTY+QYWIRKS
Sbjct: 317  LIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKS 376

Query: 1071 MSTLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLAC 1250
            +  +VAR++RGI IP SLN  +NQI+KAR+++ + H + P+D EI++ TG+SL KI+ A 
Sbjct: 377  ILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSAS 436

Query: 1251 KCPRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQV 1430
             C RIV SIDQ++GD L +++ME   D +I++PE+ VM QHMRKD+++LL+GL  RER++
Sbjct: 437  NCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKI 496

Query: 1431 LILRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            L LR+GL D + +SL++IG +FK +KE IRKIEK ALTK++ E     L +YL+
Sbjct: 497  LTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYLD 550


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  427 bits (1099), Expect = e-117
 Identities = 243/527 (46%), Positives = 336/527 (63%), Gaps = 3/527 (0%)
 Frame = +3

Query: 21   VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSGDKEEMKMKIGR 200
            VR   +S+ + R S LS + EES +  KD LKA           EN   + ++ K  IG 
Sbjct: 73   VRIPVSSFVATRWSFLSSVKEESRIYQKDPLKACASSAPYTA--ENVFLELKDPKENIGV 130

Query: 201  GSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLEK 380
            GS                + + +S  MLQ N       L +N+  +EE FV  D  ++E+
Sbjct: 131  GS---------------AEKSCSSRSMLQYNL------LAKNLLALEETFVALDSARMER 169

Query: 381  DILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVXX 560
            DI++Q+GKLGA  LF  CLSR+ G      S     TEL   +P     + +V   +   
Sbjct: 170  DIMLQMGKLGAADLFKTCLSRSRG--SSVASCLSDTTELVGTTP-----NQQV--FVSSR 220

Query: 561  XXXXXXXXXXXXALEXXXXXXXXXXXXXTISK--VPRRENPSNSMTRRLIIAKKESKMSI 734
                          E             T +   VPR   P     +R  I+K E++MS 
Sbjct: 221  RKLKKKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRVRRPPKYRKKRERISKNEAEMST 280

Query: 735  GVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRSL 914
            GVK  A++ERIRT LE E+G+V S SCWAEAAG++EK+L + LH+GWYCRD+LL+STRSL
Sbjct: 281  GVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSL 340

Query: 915  VFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVARH 1094
            V ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMS +V+RH
Sbjct: 341  VLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRH 400

Query: 1095 SRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIVG 1271
            +RG+HIP S+   +NQI+KAR++L   HG +YP D++IS+ T +S+ KIR A +C ++VG
Sbjct: 401  ARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVG 460

Query: 1272 SIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILRYGL 1451
            SI++++GD  S KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYGL
Sbjct: 461  SIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGL 520

Query: 1452 QDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            Q+ R KSLEEIG++ + +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 521  QNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 567


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  427 bits (1098), Expect = e-117
 Identities = 222/472 (47%), Positives = 319/472 (67%), Gaps = 1/472 (0%)
 Frame = +3

Query: 180  MKMKIGRGSHRTLYNPID-DTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVD 356
            +++ +G+GS  +LY+ +D D  +   +D   +   +Q  + S+   LM+N++ +E++F D
Sbjct: 12   IQVALGKGSSDSLYSLLDSDIQIPKNEDKLENLTSVQATQASKLRLLMKNLDVLEDMFAD 71

Query: 357  ADVVKLEKDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDK 536
            ++ V+LE DIL QL +LGA++LFH CLSRT+        +  P TE+  +  +      K
Sbjct: 72   SNAVRLEGDILEQLERLGALRLFHSCLSRTIKSYTSFDLSDGP-TEIVEECKVFVHSGKK 130

Query: 537  VGNIIVXXXXXXXXXXXXXXALEXXXXXXXXXXXXXTISKVPRRENPSNSMTRRLIIAKK 716
                +               +                  + PR  N      +R   A+ 
Sbjct: 131  ELRKLRRKRTSDNESPTIQESPSKTISKDLQQLKFAIAGRTPRSRN------KRQKTARN 184

Query: 717  ESKMSIGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLL 896
            E+ MS GVK  A LE+IRT LE ETG++ S S WAEAAG+ +K LQQ LH+GW+CRD+LL
Sbjct: 185  EADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRDELL 244

Query: 897  RSTRSLVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMS 1076
            RST SLV +IARNY  LG++ EDL+QAGN+GVLQGAERFD +RGY+FSTY+QYWIRKSMS
Sbjct: 245  RSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRKSMS 304

Query: 1077 TLVARHSRGIHIPVSLNSVMNQIRKARRSLYNIHGRYPNDDEISRFTGVSLAKIRLACKC 1256
            TLVA+H+RG+ IP +L+ V+NQ+ KAR++L   +G+YP+D EI++FTG+S+AK+  A KC
Sbjct: 305  TLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSASKC 364

Query: 1257 PRIVGSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLI 1436
             R+VGSIDQ++G+ ++ K+ME  SD S+ +PEE V+ QHM  D+  LL GL+PRE+QV+I
Sbjct: 365  LRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQVII 424

Query: 1437 LRYGLQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            LR+GL + + KSLEEIGR+F+ +KEWIRKIE+SAL K+R E+  + L+HY++
Sbjct: 425  LRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVH 476


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  424 bits (1091), Expect = e-116
 Identities = 243/528 (46%), Positives = 333/528 (63%), Gaps = 4/528 (0%)
 Frame = +3

Query: 21   VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSG-DKEEMKMKIG 197
            VR    S  + R S LS + EES +   DSLKA           +N    + ++ K  IG
Sbjct: 73   VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIG 132

Query: 198  RGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLE 377
             GS    Y+               S  MLQ N       L +N+  +EE FV  D V++E
Sbjct: 133  VGSAERSYS---------------SRSMLQYNL------LAKNLLALEETFVALDSVRME 171

Query: 378  KDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVX 557
            +DI++Q+GKLGA +LF  CLSR  G      S     TEL   +P     + +V   +  
Sbjct: 172  RDIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSS 222

Query: 558  XXXXXXXXXXXXXALEXXXXXXXXXXXXXTISK--VPRRENPSNSMTRRLIIAKKESKMS 731
                           E             T +   VPR   P     +R  I++ E++MS
Sbjct: 223  RRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMS 282

Query: 732  IGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRS 911
             GVK  A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRS
Sbjct: 283  TGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRS 342

Query: 912  LVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVAR 1091
            LV ++ARNYR +GI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+R
Sbjct: 343  LVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSR 402

Query: 1092 HSRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIV 1268
            H+RG+HIP S+   +N I+KAR++L   HG +Y  D+EI++ TG S+ KIR A +C ++V
Sbjct: 403  HARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVV 462

Query: 1269 GSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILRYG 1448
            GSID+++GD  + KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYG
Sbjct: 463  GSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYG 522

Query: 1449 LQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            LQD R KSLEEIG++FK +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 523  LQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
            gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
            polymerase sigma factor sigC; Short=Sigma factor C;
            Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
            sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
            Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
            [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
            [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
            factor SigC [Arabidopsis thaliana]
            gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
            thaliana] gi|133778870|gb|ABO38775.1| At3g53920
            [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
            RNApolymerase sigma-subunit C [Arabidopsis thaliana]
          Length = 571

 Score =  423 bits (1087), Expect = e-115
 Identities = 243/528 (46%), Positives = 332/528 (62%), Gaps = 4/528 (0%)
 Frame = +3

Query: 21   VRGKEASYESPRMSILSVIPEESEVLYKDSLKAYXXXXXXLQIIENQSG-DKEEMKMKIG 197
            VR    S  + R S LS + EES +   DSLKA           +N    + ++ K  IG
Sbjct: 73   VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIG 132

Query: 198  RGSHRTLYNPIDDTSVSIQDDTSTSYPMLQVNKTSRFSSLMENIEKIEEIFVDADVVKLE 377
             GS    Y+               S  MLQ N       L +N+  +EE FV  D V++E
Sbjct: 133  VGSAERSYS---------------SRSMLQYNL------LAKNLLALEETFVALDSVRME 171

Query: 378  KDILIQLGKLGAIKLFHVCLSRTLGLKEPTLSTPIPITELPRDSPINGPIDDKVGNIIVX 557
            +DI++Q+GKLGA +LF  CLSR  G      S     TEL   +P     + +V   +  
Sbjct: 172  RDIMLQMGKLGAAELFKTCLSRYRG--SSITSCLSDTTELVDTTP-----NQQV--FVSS 222

Query: 558  XXXXXXXXXXXXXALEXXXXXXXXXXXXXTISK--VPRRENPSNSMTRRLIIAKKESKMS 731
                           E             T +   VPR   P     +R  I++ E++MS
Sbjct: 223  RRKVKKKARRSSVTAENGDQSSLPIGLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMS 282

Query: 732  IGVKEAANLERIRTSLEAETGRVISFSCWAEAAGVDEKVLQQRLHFGWYCRDKLLRSTRS 911
             GVK  A++ERIRT LE E+G+V S SCWA AAG++EK+L + LH+GWYCRD+L++STRS
Sbjct: 283  TGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRS 342

Query: 912  LVFYIARNYRRLGISLEDLLQAGNVGVLQGAERFDHTRGYRFSTYIQYWIRKSMSTLVAR 1091
            LV ++ARNYR LGI+ EDL+QAG VGVLQGAERFDHTRGY+FSTY+QYWIRKSMST+V+R
Sbjct: 343  LVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSR 402

Query: 1092 HSRGIHIPVSLNSVMNQIRKARRSLYNIHG-RYPNDDEISRFTGVSLAKIRLACKCPRIV 1268
            H+RG+HIP S+   +N I+KAR++L   HG +Y  D+EI++ TG S+ KIR A +C ++V
Sbjct: 403  HARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVV 462

Query: 1269 GSIDQRMGDNLSIKFMEFTSDKSIKTPEEMVMTQHMRKDIYELLQGLQPRERQVLILRYG 1448
            GSID+++GD  + KF+EFT D ++++PEE VM Q  R+DI++LL+GL+PRE+QV++LRYG
Sbjct: 463  GSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYG 522

Query: 1449 LQDGRSKSLEEIGRVFKCTKEWIRKIEKSALTKVRKEEVQRNLSHYLN 1592
            LQD R KSLEEIG++ K +KEWIRKIE+ A+ K+R +    +L +YLN
Sbjct: 523  LQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570