BLASTX nr result
ID: Akebia27_contig00003258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia27_contig00003258
(3956 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1466 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1453 0.0
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun... 1427 0.0
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 1406 0.0
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus... 1395 0.0
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1387 0.0
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1384 0.0
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1383 0.0
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1383 0.0
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] 1382 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1381 0.0
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 1380 0.0
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1380 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1379 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1378 0.0
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 1377 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 1372 0.0
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob... 1372 0.0
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m... 1371 0.0
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A... 1356 0.0
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1466 bits (3794), Expect = 0.0
Identities = 753/1045 (72%), Positives = 841/1045 (80%), Gaps = 23/1045 (2%)
Frame = -3
Query: 3759 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIA-------- 3604
M+S +T I SANL +L IS +KP+ +P+ +K TVMWR + K+
Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPL---KKPTVMWRNIAKRAIPRAPRKCV 57
Query: 3603 --SSRKLMR------FSQSTIFQE--KTRPFELKNGVNFRSFEMGICRNGKILFGEEDMG 3454
S+ L R FSQ IF E K FE + + EMG R G+I E+ +G
Sbjct: 58 YLDSQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVG 117
Query: 3453 RPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXX 3274
RP F C N +GFSGF PK Y+S VAEAV STD EEDVS DEIQ
Sbjct: 118 RPSFGCLRNQMGFSGFC--PKSYAS-VAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQ 174
Query: 3273 XXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNL 3094
R+ + K GM G+Y LRRRQ+KIET++W+ AAKEYKELL DMCEQKLAPNL
Sbjct: 175 VNFKRREKLKMERGMEQGRYLR--LRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNL 232
Query: 3093 PYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMT 2914
PYMKSLFLGWF+PL D I +EQELCR GK++ AYAPYFDQLPADMM+VITMHKL+GLLMT
Sbjct: 233 PYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMT 292
Query: 2913 GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVE---VDPVTKEQVK 2743
GG+ GSTRVVQAAC IG+AIE EVRIH VE DPV EQ K
Sbjct: 293 GGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKN--VEGGGFDPVIHEQEK 350
Query: 2742 LRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPV-NQL 2566
LR KVT+LMKKQKLH R IV+G D+ KPWG E AKVG LIELLM+TAYIQPPV NQL
Sbjct: 351 LRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQL 410
Query: 2565 ADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPP 2386
AD PPDIRPAF+H+ K + + A K GR+ G+IECDPLV++GLE+TARHMVIPY+PMLVPP
Sbjct: 411 ADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPP 470
Query: 2385 INWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRM 2206
+ WTGYDKGA+LFLPSY MRTHGARQQREA+KRAP+ QLE VFEALNTLGNTKWR+NKR+
Sbjct: 471 LKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRL 530
Query: 2205 LDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCD 2026
DV+DRIWA GG LADLVDR DVP+P +PDTEDE +L K NSERHSQRCD
Sbjct: 531 FDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCD 590
Query: 2025 VELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSG 1846
+ELKLAVAR+MKDEDGFFYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG+SG
Sbjct: 591 IELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSG 650
Query: 1845 LRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 1666
L WLKIHLANL+AGGVDKLS++GRI FTENHLDDIFDSADRPLEG+RWWL AEDPFQ LA
Sbjct: 651 LHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLA 710
Query: 1665 VCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1486
CINLSEA RSSSP+ +SH+P+HQDGSCNGLQHYAALGRD+LGA AVNLVAG+KPADVY
Sbjct: 711 ACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVY 770
Query: 1485 SGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQI 1306
SGIAARVL+IM+ DAEKDP + P+ALRAR+LIN VDRKLVKQTVMTSVYGVTYIGARDQI
Sbjct: 771 SGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQI 830
Query: 1305 KRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVR 1129
KRRLKERNA+ D+ ELFGAACYAAK TLTALGEMFQAARSIMSWLGDCAK+IASENQPVR
Sbjct: 831 KRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVR 890
Query: 1128 WTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMM 949
WTTP GLPVVQPYR+LGRHLIKTSLQVLTL+R+T+ IMVKRQRTAFPPNFVHSLDGSHMM
Sbjct: 891 WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMM 950
Query: 948 MTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPK 769
MTA+AC KAGLNFAGVHDSYWTHACDVD MNR+LREKFV+LYETPILENLLESFQ+SFP
Sbjct: 951 MTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPA 1010
Query: 768 LTFPPLPERGDFDLKEVLESPYFFN 694
L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 1011 LEFPPLPERGDFDLREVLESPYFFN 1035
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1453 bits (3762), Expect = 0.0
Identities = 731/992 (73%), Positives = 816/992 (82%), Gaps = 12/992 (1%)
Frame = -3
Query: 3633 MWRRVVKQIASSRKLMRFSQSTIFQ-----------EKTRPFELKNGVNFRSFEMGICRN 3487
MWR + K A +R+L SQ + F +K R E ++ VN G+ R
Sbjct: 1 MWRNLAKH-AYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59
Query: 3486 GKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVX 3307
G + F ++++GRPGF P+ F G + KGY+S+ AEA+ S EED+S VDE+Q
Sbjct: 60 GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASA-AEAIAS---EEDMSGVDEVQ-- 113
Query: 3306 XXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLA 3127
+ QPK +GG+ GK+ +LRRRQ+K+ET++W++AAKEY+ELL+
Sbjct: 114 ----ELVEEVNKGDKLEKQPKLIGGVAQGKHN--VLRRRQIKMETEAWEEAAKEYRELLS 167
Query: 3126 DMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVI 2947
DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC+QGK+R AYAPYFD LPADMMAVI
Sbjct: 168 DMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVI 227
Query: 2946 TMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVD 2767
TMHKLMGLLMTG GS RVVQAACHIGEAIEHEVRI +
Sbjct: 228 TMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGS-N 286
Query: 2766 PVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYI 2587
PVTKEQ KLR KV+ LMKKQKL QVR IV+ QDD KPWGQ+ + KVG LIELL+ TAYI
Sbjct: 287 PVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 346
Query: 2586 QPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPY 2407
QPP +QL DGPPDIRPAF+H+LK + K K R+ G+IECDPLVR+GLEKTARHMVIPY
Sbjct: 347 QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 406
Query: 2406 MPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTK 2227
MPMLVPP+NWTGYDKGAYLFLPSY MR HGARQQREAIKRAP+K LE FEALNTLGNTK
Sbjct: 407 MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 466
Query: 2226 WRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSE 2047
WR+NKR+L VIDRIWASGGRLADLVDREDVP+P EPDTEDE E+ K+NSE
Sbjct: 467 WRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSE 526
Query: 2046 RHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 1867
RHSQRCD+ELKLAVAR+MKDEDGFFYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEG
Sbjct: 527 RHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 586
Query: 1866 RPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAE 1687
RPLG SGLRWLKIHLAN+YAGGVDKLSY+GR+AFTENHL+DIFDSADRPLEGRRWWL AE
Sbjct: 587 RPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAE 646
Query: 1686 DPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 1507
DPFQCLA CINLSEA RSSSP+ +SHMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG
Sbjct: 647 DPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 706
Query: 1506 DKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTY 1327
+KPADVYSGIAARVL+IM+ DA+KDP +PNALRARLLI+ VDRKLVKQTVMTSVYGVTY
Sbjct: 707 EKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTY 766
Query: 1326 IGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIA 1150
IGARDQIKRRLKER A+ DE E+F A+CYAAKTTLTALGEMF+AARSIMSWLGDCAKVIA
Sbjct: 767 IGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIA 826
Query: 1149 SENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHS 970
SEN PVRW TP GLPVVQPYR+LGRHLIKTSLQVL+L+R+TDK+MVKRQRTAFPPNFVHS
Sbjct: 827 SENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHS 886
Query: 969 LDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLES 790
LDGSHMMMTAVAC KAGLNFAGVHDSYWTHACDVD MNRILREKFVELY PILENLLE
Sbjct: 887 LDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEG 946
Query: 789 FQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
FQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 947 FQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978
>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
gi|462422319|gb|EMJ26582.1| hypothetical protein
PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1427 bits (3693), Expect = 0.0
Identities = 719/1011 (71%), Positives = 812/1011 (80%), Gaps = 31/1011 (3%)
Frame = -3
Query: 3633 MWRRVVKQIAS--------------SRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEMGI 3496
MWR + KQ+AS S M FSQ + F +K R FE + +N R MG
Sbjct: 1 MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60
Query: 3495 CRNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEI 3316
+ G + +E++GR P G SGF N+ KGY+S VAEA+ STD EED S +EI
Sbjct: 61 RQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYAS-VAEAIASTDGEEDSSGSEEI 119
Query: 3315 QVXXXXXXXXXXXXXXLNRQNQPKGVG-GMGLGKYQYQLLRRRQMKIETQSWDQAAKEYK 3139
Q + QPK V GMG+GKY LLR+RQ+K+ET++W +AAKEY+
Sbjct: 120 Q--EMLEDLIRENNMVESHFKQPKRVVVGMGVGKYN--LLRKRQIKLETEAWQEAAKEYQ 175
Query: 3138 ELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADM 2959
ELLADMCEQKLAPNLPY+KSLFLGWF+PL D IA +Q+ C+Q R ++APYFD LPAD
Sbjct: 176 ELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADK 235
Query: 2958 MAVITMHKLMGLLMT-GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXX 2782
MAVITMHKLMGLLMT G GS RVVQAAC IGEAIEHEVRIH
Sbjct: 236 MAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKA 295
Query: 2781 EVEVDPV--------------TKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQE 2644
E + PV TKEQ +LR KV L+K+QK+ QVR IV+ Q+D+KPWGQE
Sbjct: 296 EADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQE 355
Query: 2643 THAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIEC 2464
H KVGC LI+LLM TAYIQPPV+Q+ DGPPDIRPAF+H+LK I + KT R+ G+IEC
Sbjct: 356 AHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIEC 415
Query: 2463 DPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRA 2284
DP+VR+G+EKTARHMV+PYMPMLVPPINWTGYD+GAYLFLPSY MRTHGA+QQRE +KR
Sbjct: 416 DPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRT 475
Query: 2283 PQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDE 2104
P+KQLE VFEAL+TLG+TKWRVNKR+L VIDRIWASGGRLADLVDREDVP+P EPDTEDE
Sbjct: 476 PRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDE 535
Query: 2103 PELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHP 1924
E+ K+NSERHSQRCD+ELKLA +R+MKDE+GF+YPHN+DFRGRAYPMHP
Sbjct: 536 AEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHP 595
Query: 1923 YLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDD 1744
YLNHLGSD+CRGILEF+EGR LG SGLRWLKIHLANLYAGGVDKLS+D R AFTENH+D+
Sbjct: 596 YLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDE 655
Query: 1743 IFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQH 1564
IFDSADRPLEGRRWWLGAEDPFQCLA CINL EA RS SP+ +S+MP+HQDGSCNGLQH
Sbjct: 656 IFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQH 715
Query: 1563 YAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINH 1384
YAALGRDKLGAAAVNLV GDKPADVYSGIAARVL+IMR DAEKDP +PNAL ARLLIN
Sbjct: 716 YAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQ 775
Query: 1383 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEM 1207
VDRKLVKQTVMTSVYGVTY+GARDQIKRRLKER ++ D+ LF AACYAA+TTLTALGEM
Sbjct: 776 VDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEM 835
Query: 1206 FQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDT 1027
F+AARSIMSWLG+CAKVIASENQPVRW TP GLPVVQPYRQLGRHLIKTSLQVLTL+R+T
Sbjct: 836 FEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRET 895
Query: 1026 DKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRIL 847
DK+MVKRQRTAFPPNFVHSLDGSHMMMTAVAC KAGLNFAGVHDSYWTHACD+D MNRIL
Sbjct: 896 DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRIL 955
Query: 846 REKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
REKFVELYE PILENLLE FQ+SFP LTFPPLP+RGDFDL++VLESPYFFN
Sbjct: 956 REKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 1406 bits (3640), Expect = 0.0
Identities = 712/1037 (68%), Positives = 813/1037 (78%), Gaps = 15/1037 (1%)
Frame = -3
Query: 3759 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRK---- 3592
M+ +T + AN++ F S +IFH S ST +WR KQ S ++
Sbjct: 1 MSRSQTPLSPANISKNFTFH------SPLIFHKNPS-MISTTVWRNFAKQAISRKQRFHI 53
Query: 3591 ----------LMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICRNGKILFGEEDMGRPGF 3442
L+ Q ++F +PFEL + + R E+G G I E+ M +P F
Sbjct: 54 NSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSF 113
Query: 3441 RCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLN 3262
NPI F+GF PKGY+S VAEAV STD EE+VSVVDE+Q
Sbjct: 114 WSVRNPIWFNGFC--PKGYAS-VAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYK 170
Query: 3261 RQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMK 3082
++ + GMG GKY +L+RRQ+KIET++W++AAKEY+EL+ DMCEQKLAPNLPYMK
Sbjct: 171 QRTRQNRARGMGQGKYH--MLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMK 228
Query: 3081 SLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDP 2902
SLFLGWF+PL + I +EQ+LCR+GK++ AYAPY DQLPADMM+VITMHKLMGLLMTGG+
Sbjct: 229 SLFLGWFEPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEH 288
Query: 2901 GSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTD 2722
G+ RVV AAC IGEAIE EVRIH E D KE+ KL KVT+
Sbjct: 289 GTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENG-ESDAAKKEREKLNKKVTN 347
Query: 2721 LMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIR 2542
LMKKQKL VR IV D K W E AKVG LIELL +TA+IQPP +QLADGPPDIR
Sbjct: 348 LMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIR 407
Query: 2541 PAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDK 2362
PAF+H+ + + K A R+ G+IECDPLV +GLEKTARHMVIPYMPMLVPP+NWTGYDK
Sbjct: 408 PAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDK 467
Query: 2361 GAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIW 2182
G Y FLPSY MR HGARQQREAIKR P++QLE VF+AL+ LGNT+WRVNKR+L V+DRIW
Sbjct: 468 GGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIW 527
Query: 2181 ASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVA 2002
ASGG LADLVDR DVP+P EPDTEDE L K+N ERHSQRCD ELKLAVA
Sbjct: 528 ASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVA 587
Query: 2001 RQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHL 1822
R+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLG SGL WLKIHL
Sbjct: 588 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHL 647
Query: 1821 ANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEA 1642
ANLYAGGVDKLS +GRIAFTENHLDDIFDS D+PLEGRRWWL AEDPFQCLAVCINL+EA
Sbjct: 648 ANLYAGGVDKLSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEA 707
Query: 1641 FRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL 1462
RSSSP+ +SH+P+HQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVL
Sbjct: 708 LRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVL 767
Query: 1461 EIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERN 1282
EIMR DA+KDPVV P ALRA+LLIN VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 768 EIMRRDAQKDPVVFPEALRAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERG 827
Query: 1281 ALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLP 1105
++ D+ E+FG ACYAAK TLTALGEMF+AAR IMSWLG+CAK+IASENQPVRWTTP GLP
Sbjct: 828 SISDDAEIFGCACYAAKITLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLP 887
Query: 1104 VVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNK 925
VVQPYR+ GRHLIKTSLQVLTL+R+T+K+MVKRQRTAFPPNFVHSLD SHMMMTA+AC K
Sbjct: 888 VVQPYRKFGRHLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKK 947
Query: 924 AGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLPE 745
AGL+FAGVHDSYWTHACDVD MN+ILREKFV+LYETPILENLLESFQ+SFP LTFPPLPE
Sbjct: 948 AGLSFAGVHDSYWTHACDVDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPE 1007
Query: 744 RGDFDLKEVLESPYFFN 694
RGDFDL++VLESPYFFN
Sbjct: 1008 RGDFDLRDVLESPYFFN 1024
>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
Length = 983
Score = 1395 bits (3612), Expect = 0.0
Identities = 700/997 (70%), Positives = 806/997 (80%), Gaps = 17/997 (1%)
Frame = -3
Query: 3633 MWRRVVKQIASSRKLMRFSQS---------------TIFQEKTRPFELKNGVNFRSFEMG 3499
MWR + KQ + R FS+S +IF E P +L++ +N E+G
Sbjct: 1 MWRNLSKQ-SYLRNFKVFSESHPSPNAFSAGKSPKDSIFVENAVPRQLRSCINTCGSELG 59
Query: 3498 ICRNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDE 3319
R + P + + F G + +GY+++ AEA+ ST EE VDE
Sbjct: 60 FRRALVFWRPPREASCPNYAISSHTFRFFGST---RGYAAA-AEALVSTSEEE----VDE 111
Query: 3318 IQVXXXXXXXXXXXXXXLNR-QNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEY 3142
+Q NR Q QPK VGGMGLGKY LRRRQ+KIET++W+ AAKEY
Sbjct: 112 LQELIEEINKEINVKSTDNREQKQPKLVGGMGLGKYNS--LRRRQIKIETEAWENAAKEY 169
Query: 3141 KELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPAD 2962
+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC++GK+RGAYAPYFDQLPA+
Sbjct: 170 QELLEDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAE 229
Query: 2961 MMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXX 2782
MMAVITMHKLMGLLMTGG GS RVVQAACHIGEAIEHEVRIH
Sbjct: 230 MMAVITMHKLMGLLMTGGGNGSARVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSE 289
Query: 2781 EVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLM 2602
E DP KEQ +LR KV LMKKQK+ QVR IVR QDD+KPWGQ+ KVGC LI++L
Sbjct: 290 EGP-DPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILT 348
Query: 2601 RTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARH 2422
+TAYIQPPV+Q DG PDIRPAF+H+LK ++ +K R+ G+IECDPLVR+G+EKTARH
Sbjct: 349 QTAYIQPPVDQRDDGAPDIRPAFVHTLKCVE--TLKGSRRYGVIECDPLVRKGMEKTARH 406
Query: 2421 MVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNT 2242
MVIPYMPMLVPP+NWTGY++GAYLFLPSY MRTHGA+QQREA+KR P+++LE +F+ALNT
Sbjct: 407 MVIPYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNT 466
Query: 2241 LGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXX 2062
LGNTKWRVNKR+L V+DRIWA+GGRLADLVDRED+P+P EPDTEDE E+
Sbjct: 467 LGNTKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVK 526
Query: 2061 KQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGIL 1882
K NSERHSQRCD+ELKLAVAR++K+E+GF+YPHN+DFRGRAYPMHPYLNHLGSDLCRGIL
Sbjct: 527 KVNSERHSQRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 586
Query: 1881 EFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRW 1702
EFAEGRPLG SGL+WLK+HLANLY GGVDK SYDGRI+FTENH++DIFDSADRPLEG+RW
Sbjct: 587 EFAEGRPLGKSGLQWLKVHLANLYGGGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRW 646
Query: 1701 WLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAV 1522
WLGAEDPFQCLA C++L+EA RS P+ VS++P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 647 WLGAEDPFQCLATCMSLTEALRSPYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAV 706
Query: 1521 NLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSV 1342
NLVAGDKPADVYSGIAARVL+IM+ DA KDP DPN +RARLLIN VDRKLVKQTVMTSV
Sbjct: 707 NLVAGDKPADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLINQVDRKLVKQTVMTSV 766
Query: 1341 YGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDC 1165
YGVTYIGARDQIKRRLKER ++ D+ ELF ACYAAKTTLTALGEMF+AARSIMSWLGDC
Sbjct: 767 YGVTYIGARDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDC 826
Query: 1164 AKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPP 985
AK+IA+EN PVRWTTP GLPVVQPYR+LGRH+IKTSLQVLTL+R+TDK+M KRQRTAFPP
Sbjct: 827 AKIIATENHPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPP 886
Query: 984 NFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILE 805
NFVHSLDGSHMMMTA+AC++AGL+FAGVHDSYWTHACDVD MN ILREKFVELYE PILE
Sbjct: 887 NFVHSLDGSHMMMTAIACSEAGLSFAGVHDSYWTHACDVDKMNEILREKFVELYEAPILE 946
Query: 804 NLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
NLL+ FQ+SFPKL FPPLPERGDFDL+EVL+S YFFN
Sbjct: 947 NLLDGFQQSFPKLKFPPLPERGDFDLREVLDSTYFFN 983
>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
tuberosum]
Length = 993
Score = 1387 bits (3591), Expect = 0.0
Identities = 707/1004 (70%), Positives = 801/1004 (79%), Gaps = 24/1004 (2%)
Frame = -3
Query: 3633 MWRRVVKQIASSRKLMRFSQSTIFQ-----EKTRPFELKNGVNFRSFEMGICR------- 3490
MWR + KQ A SRKL S KTRP + +R+ +G+ +
Sbjct: 1 MWRYISKQ-AYSRKLRNTHDSDFLGFAQSFGKTRPLQGLCEEIYRNPNLGVSQSSIFTRV 59
Query: 3489 NGK--ILFGE-EDMGRPGFRCFPNPIGFSGFSNHPKGYSS--------SVAEAVPSTDTE 3343
NGK L G ED R + F FS + S S AEA+ ST E
Sbjct: 60 NGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGILRSYGSAAEAIASTSEE 119
Query: 3342 EDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSW 3163
+ +DEIQ + QPK VGGMG+GKY LLRRRQ+K+ET++W
Sbjct: 120 D----IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN--LLRRRQIKVETEAW 173
Query: 3162 DQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPY 2983
+ AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC +GK+RGAYAP+
Sbjct: 174 EDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 233
Query: 2982 FDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXX 2803
FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 234 FDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNA 293
Query: 2802 XXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGC 2623
+ KE+ +LR KV LMKKQKL QVR IV+ QDD KPWGQ+ KVGC
Sbjct: 294 LDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGC 351
Query: 2622 HLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQG 2443
LI++L+ TAYIQPP +QL D PPDIRPAF+H+LK ++ +K R+ G+I+CDPLVR+G
Sbjct: 352 KLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTVE--TVKGSRRYGVIQCDPLVRKG 409
Query: 2442 LEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEH 2263
L+KTARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY MRTHGA+QQREA+KR P+KQLE
Sbjct: 410 LDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 469
Query: 2262 VFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXX 2083
VF+AL+TLGNTKWRVNKR+L ++DRIWASGGRLADLVDREDVP+P EPDTEDE E+
Sbjct: 470 VFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWK 529
Query: 2082 XXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGS 1903
K+N ERHSQRCD+ELKLAVAR+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLGS
Sbjct: 530 WKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 589
Query: 1902 DLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 1723
DLCRGILEF+EGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR AF+ENH++DIFDSADR
Sbjct: 590 DLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADR 649
Query: 1722 PLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRD 1543
PLEGRRWWLGAEDPFQCLA CIN+SEA RS SP+ ++SHMPIHQDGSCNGLQHYAALGRD
Sbjct: 650 PLEGRRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRD 709
Query: 1542 KLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVK 1363
KLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA+KDP DPN +RARLLIN VDRKLVK
Sbjct: 710 KLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVK 769
Query: 1362 QTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSI 1186
QTVMTSVYGVTYIGARDQIKRRLKER A+ D+ ELF AACYAAKTTLTALGEMF+AARSI
Sbjct: 770 QTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSI 829
Query: 1185 MSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKR 1006
MSWLGDCAK+IA ENQPVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R+TDK+MVKR
Sbjct: 830 MSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKR 889
Query: 1005 QRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVEL 826
QRTAFPPNFVHSLDGSHMMMTA+ C +AGL+FAGVHDSYWTHA DVD MN+ILREKFVEL
Sbjct: 890 QRTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVEL 949
Query: 825 YETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
Y+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 950 YDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1B; Flags: Precursor
Length = 1002
Score = 1384 bits (3581), Expect = 0.0
Identities = 689/966 (71%), Positives = 791/966 (81%), Gaps = 4/966 (0%)
Frame = -3
Query: 3579 SQSTIFQEKTRPFELKNGV---NFRSFEMGICRNGKILFGEEDMGRPGFRCFPNPIGFSG 3409
SQ++IF +R G+ + ++ +G+ +N + D G R SG
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRG-------SG 106
Query: 3408 FSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGM 3229
+ Y S+ AEA+ ST E+ +DEIQ + QPK +GGM
Sbjct: 107 SLGRLRSYGSA-AEAIVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGM 161
Query: 3228 GLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLC 3049
G+GKY + LRRRQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL
Sbjct: 162 GVGKYNF--LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 219
Query: 3048 DCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACH 2869
D IA EQ+LC +GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA +
Sbjct: 220 DAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASY 279
Query: 2868 IGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVR 2689
IGEAIEHE RIH E D + KE+ +LR KV LMKKQKL QVR
Sbjct: 280 IGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD-MMKERERLRKKVKILMKKQKLRQVR 338
Query: 2688 LIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIK 2509
IV+ QDD KPWGQ+ KVGC LI++LM TAYIQPP +QL DGPPDIRPAF+H+LK ++
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVE 398
Query: 2508 KGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCM 2329
MK R+ G+I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKG YLFLPSY M
Sbjct: 399 --TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIM 456
Query: 2328 RTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVD 2149
RTHGA+QQREA+KR P+KQLE VF+AL+TLGNTKWRVN+++L ++DRIWASGGRLADLVD
Sbjct: 457 RTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVD 516
Query: 2148 REDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFY 1969
REDVP+P PDTEDE E+ K+N ERHSQRCD+ELKLAVAR+MKDEDGF+Y
Sbjct: 517 REDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYY 576
Query: 1968 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKL 1789
PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKL
Sbjct: 577 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKL 636
Query: 1788 SYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVS 1609
SY+GR+AF+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S
Sbjct: 637 SYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Query: 1608 HMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDP 1429
+MPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP
Sbjct: 697 YMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDP 756
Query: 1428 VVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGA 1252
DPN +RARLLIN VDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER + D+ ELF A
Sbjct: 757 ANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAA 816
Query: 1251 ACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRH 1072
ACYAAKTTLTALGEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRH
Sbjct: 817 ACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRH 876
Query: 1071 LIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDS 892
LIKTSLQ+LTL+R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDS
Sbjct: 877 LIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDS 936
Query: 891 YWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLE 712
YWTHACDVD MN+ILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLE
Sbjct: 937 YWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLE 996
Query: 711 SPYFFN 694
SPYFFN
Sbjct: 997 SPYFFN 1002
>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
lycopersicum]
Length = 993
Score = 1383 bits (3580), Expect = 0.0
Identities = 704/1004 (70%), Positives = 800/1004 (79%), Gaps = 24/1004 (2%)
Frame = -3
Query: 3633 MWRRVVKQIASSRKLMRFSQSTIFQ-----EKTRPFELKNGVNFRSFEMGICR------- 3490
MWR + KQ+ S RKL S KTRP + +R+ +G+ +
Sbjct: 1 MWRYISKQVYS-RKLRNTHDSDFLGFAQSFRKTRPLQGLCEEGYRNPNLGVSQSSIFSRV 59
Query: 3489 NGK--ILFGE-EDMGRPGFRCFPNPIGFSGFSNHPKGYSS--------SVAEAVPSTDTE 3343
NGK L G ED R + F FS + S S AEA+ ST E
Sbjct: 60 NGKSRCLDGMCEDSCRNHYLGFSESSIFSRVKGDFRVCGSLGVLRSYGSAAEAIASTSEE 119
Query: 3342 EDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSW 3163
+ +DEIQ + QPK VGGMG+GKY LLRRRQ+K+ET++W
Sbjct: 120 D----IDEIQELIEEMNKENEALKTNLQPKQPKTVGGMGIGKYN--LLRRRQIKVETEAW 173
Query: 3162 DQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPY 2983
+ AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF+PL D IA EQ+LC +GK+RGAYAP+
Sbjct: 174 EDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQKLCDEGKNRGAYAPF 233
Query: 2982 FDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXX 2803
FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 234 FDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNA 293
Query: 2802 XXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGC 2623
+ KE+ +LR KV LMKKQKL QVR IV+ QDD KPWGQ+ KVGC
Sbjct: 294 LDGSLEETA--GDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGC 351
Query: 2622 HLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQG 2443
LI++L+ TAYIQPP +QL D PPDIRPAF+H+LK + +K R+ G+I+CDPLVR+G
Sbjct: 352 RLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTVD--TVKGSRRYGVIQCDPLVRKG 409
Query: 2442 LEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEH 2263
L+KTARHMVIPYMPMLVPP NW+GYD+GAYLFLPSY MRTHGA+QQREA+KR P+KQLE
Sbjct: 410 LDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 469
Query: 2262 VFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXX 2083
VF+AL+TLGNTKWRVNKR+L ++DRIWASGGRLADLVDREDVP+P EPDTE+E E+
Sbjct: 470 VFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTENEEEIKKWK 529
Query: 2082 XXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGS 1903
K+N ERHSQRCD+ELKLAVAR+MKDE+GF+YPHN+DFRGRAYPMHPYLNHLGS
Sbjct: 530 WKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 589
Query: 1902 DLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADR 1723
DLCRGILEF+EGRPLG SGLRWLKIHLAN+Y GGVDKLS +GR AF+ENH++DIFDSADR
Sbjct: 590 DLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAFSENHVEDIFDSADR 649
Query: 1722 PLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRD 1543
PLEGRRWWLGAEDPFQCLA CI++SEA RS SP+ ++SHMPIHQDGSCNGLQHYAALGRD
Sbjct: 650 PLEGRRWWLGAEDPFQCLATCISISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRD 709
Query: 1542 KLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVK 1363
KLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA+KDP DPN +RARLLIN VDRKLVK
Sbjct: 710 KLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVK 769
Query: 1362 QTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSI 1186
QTVMTSVYGVTYIGARDQIKRRLKER A+ D+ ELF AACYAAKTTLTALGEMF+AARSI
Sbjct: 770 QTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTTLTALGEMFEAARSI 829
Query: 1185 MSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKR 1006
MSWLGDCAK+IA ENQPVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R+TDK+MVKR
Sbjct: 830 MSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKR 889
Query: 1005 QRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVEL 826
QRTAFPPNFVHSLDGSHMMMTA+AC +AGL+FAGVHDSYWTHA DVD MN+ILREKFVEL
Sbjct: 890 QRTAFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVEL 949
Query: 825 YETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
Y+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 950 YDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 1383 bits (3579), Expect = 0.0
Identities = 700/999 (70%), Positives = 801/999 (80%), Gaps = 11/999 (1%)
Frame = -3
Query: 3657 SSKQKSTVMWRRVVKQIASSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEM-------- 3502
S ++ S+VMWR V KQ S FS++ F ++ L+ V F +M
Sbjct: 39 SPEKISSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEV 98
Query: 3501 GICRNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVD 3322
G R G+IL E+ MGR F N + P+GY++ VAEAV STD EEDVS+V+
Sbjct: 99 GSGRIGEILNHEDYMGRTSFGVLKNDNFWC-----PRGYAT-VAEAVSSTDVEEDVSIVE 152
Query: 3321 EIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEY 3142
EIQ NR+ +G MG GKY+ +L+ RQ+KIET++W++AA EY
Sbjct: 153 EIQELLQEMKKEQQSGGGRNRRRVARG---MGSGKYR--MLKMRQVKIETEAWEKAANEY 207
Query: 3141 KELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPAD 2962
+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA+EQE CR KH+ AYAPYFDQLPAD
Sbjct: 208 RELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPAD 267
Query: 2961 MMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXX 2782
MMAVITMHKLMGLLMTGG+ G RVVQAAC IG+AIE EVRIH
Sbjct: 268 MMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKED 327
Query: 2781 EV--EVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIEL 2608
E E + VT EQ KLR KVTDL+KKQKL VR IV+GQDD KPWGQ+ AKVG +IEL
Sbjct: 328 EEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIEL 387
Query: 2607 LMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTA 2428
L +TAYIQ P +QLAD PPDI PAF H+L+ + K +K G+IEC+PLV +GLE+TA
Sbjct: 388 LTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTA 447
Query: 2427 RHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEAL 2248
RHMVIPYMPMLVPP+ WTGYDKGA+ FLPSY MRTHGA+QQR+ +KR P+KQLE VFEAL
Sbjct: 448 RHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEAL 507
Query: 2247 NTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXX 2068
+TLGNTKWRVN R+L V+DRIW+ GGRLADLVDR DVP+P +P+TEDE +L
Sbjct: 508 DTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRN 567
Query: 2067 XXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRG 1888
K+N ERHSQRCD+ELKL+VAR+MKDE+GF+YPHNVDFRGRAYPMHPYLNHLGSDLCRG
Sbjct: 568 VKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRG 627
Query: 1887 ILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGR 1708
ILEFAEGR LG SGL WLKIHLANLYAGGVDKLS++GR+AFTENHLDDIFDSAD+PLEGR
Sbjct: 628 ILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGR 687
Query: 1707 RWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAA 1528
RWWL AEDPFQCLAVCINL+EA RSSSP+ +SH+P+HQDGSCNGLQHYAALGRD LGAA
Sbjct: 688 RWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAA 747
Query: 1527 AVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMT 1348
AVNLVA +KPADVYSGIAARVL I++ DA++DP V P+ALRA+LL++ VDRKLVKQTVMT
Sbjct: 748 AVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMT 807
Query: 1347 SVYGVTYIGARDQIKRRLKERNA-LPDEELFGAACYAAKTTLTALGEMFQAARSIMSWLG 1171
SVYGVTYIGARDQIKRRLKER A + + ELFGA+CYAAK TLTALGEMFQAAR IMSWLG
Sbjct: 808 SVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLG 867
Query: 1170 DCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAF 991
+CAK+IASENQPVRWTTP GLPVVQPYR+LGRH +KTSLQ+LTL+R+T+K+MVKRQRTAF
Sbjct: 868 ECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAF 927
Query: 990 PPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPI 811
PPNFVHSLDGSHMMMTAVAC KAGL FAGVHDSYWTHACDVD MNRILREKFVELYE PI
Sbjct: 928 PPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPI 987
Query: 810 LENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
LENLL+SFQ+SFPKL FPPLPERGDFDL+EVL SPYFFN
Sbjct: 988 LENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1026
>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1382 bits (3576), Expect = 0.0
Identities = 688/966 (71%), Positives = 791/966 (81%), Gaps = 4/966 (0%)
Frame = -3
Query: 3579 SQSTIFQEKTRPFELKNGV---NFRSFEMGICRNGKILFGEEDMGRPGFRCFPNPIGFSG 3409
SQ++IF +R G+ + ++ +G+ +N + D G R SG
Sbjct: 54 SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRG-------SG 106
Query: 3408 FSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGM 3229
+ Y S+ AEA+ ST E+ +DEIQ + QPK +GGM
Sbjct: 107 SLGRLRSYGSA-AEAIVSTSEED----IDEIQELIEEMDKENEALKANLQPKQPKTIGGM 161
Query: 3228 GLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLC 3049
G+GKY + LRRRQ+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL
Sbjct: 162 GVGKYNF--LRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLR 219
Query: 3048 DCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACH 2869
D IA EQ+LC +GK+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA +
Sbjct: 220 DAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASY 279
Query: 2868 IGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVR 2689
IGEAIEHE RIH E D + KE+ +LR KV LMKKQKL QVR
Sbjct: 280 IGEAIEHEARIHRFLEKTKKSNALSGDLEETPGD-MMKERERLRKKVKILMKKQKLRQVR 338
Query: 2688 LIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIK 2509
IV+ QDD KPWGQ+ KVGC LI++LM TAYIQPP +QL DGPPDIRPAF+H+LK ++
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVE 398
Query: 2508 KGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCM 2329
MK R+ G+I+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKG YLFLPSY M
Sbjct: 399 --TMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIM 456
Query: 2328 RTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVD 2149
RTHGA+QQREA+KR P+KQLE VF+AL+TLGNTKWRVN+++L +++RIWASGGRLADLVD
Sbjct: 457 RTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVD 516
Query: 2148 REDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFY 1969
REDVP+P PDTEDE E+ K+N ERHSQRCD+ELKLAVAR+MKDEDGF+Y
Sbjct: 517 REDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYY 576
Query: 1968 PHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKL 1789
PHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKL
Sbjct: 577 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKL 636
Query: 1788 SYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVS 1609
SY+GR+AF+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S
Sbjct: 637 SYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAIS 696
Query: 1608 HMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDP 1429
+MPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP
Sbjct: 697 YMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDP 756
Query: 1428 VVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGA 1252
DPN +RARLLIN VDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER + D+ ELF A
Sbjct: 757 ANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAA 816
Query: 1251 ACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRH 1072
ACYAAKTTLTALGEMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRH
Sbjct: 817 ACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRH 876
Query: 1071 LIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDS 892
LIKTSLQ+LTL+R+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDS
Sbjct: 877 LIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDS 936
Query: 891 YWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLE 712
YWTHACDVD MN+ILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLE
Sbjct: 937 YWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLE 996
Query: 711 SPYFFN 694
SPYFFN
Sbjct: 997 SPYFFN 1002
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1381 bits (3574), Expect = 0.0
Identities = 703/1038 (67%), Positives = 817/1038 (78%), Gaps = 16/1038 (1%)
Frame = -3
Query: 3759 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRKLMRF 3580
M+S +T I N+F DKP+ + +P + S +MWR ++KQ++S R
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGLDINPYHN---SPIMWRNIIKQLSS-----RT 47
Query: 3579 SQSTIFQEKTRPFEL---------KNGVNFRSFEMGICRNGKILFGEEDMGR--PGFRCF 3433
Q +F K R + K+ FRS C N I+ G +++G PG
Sbjct: 48 PQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN--IVMGFQNLGEYLPGDEFL 105
Query: 3432 PNPIGFSGFSNH---PKGYSS-SVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXL 3265
P+ + +N+ K Y+S + A AV STD EEDVSVVDE+
Sbjct: 106 SRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAF 165
Query: 3264 NRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYM 3085
R+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 166 RRRKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 3084 KSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGD 2905
KSLFLGWF+PL D IA+EQELC QGK + AYA YF QLPADMMAVITMHKLMGLLMTGGD
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGD 283
Query: 2904 PGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVT 2725
G+ RVVQAA IG+AIE EVRIH E + + VT+EQ KLR KVT
Sbjct: 284 HGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKKVT 342
Query: 2724 DLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDI 2545
+LMKKQKL V IVR QDD KPWGQ+ AKVG LI+LL++TAYIQPP NQLA PPDI
Sbjct: 343 NLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDI 402
Query: 2544 RPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYD 2365
RPAF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGYD
Sbjct: 403 RPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYD 462
Query: 2364 KGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRI 2185
KG +L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLGNTKWR+NKR+L V+DRI
Sbjct: 463 KGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRI 522
Query: 2184 WASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAV 2005
WA GGRLADLVDR+D P+P EPDTEDE K+N ERHSQRCD+ELKLAV
Sbjct: 523 WAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAV 582
Query: 2004 ARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIH 1825
AR+MKDE+ FFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG SGLRWLKIH
Sbjct: 583 ARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIH 642
Query: 1824 LANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSE 1645
LANL+AGGV+KLS +GRI FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLAVCINLSE
Sbjct: 643 LANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSE 702
Query: 1644 AFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARV 1465
A RSSSP+ +VSH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARV
Sbjct: 703 AVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARV 762
Query: 1464 LEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 1285
L+IM+ DA++DP P+A+RAR+L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 763 LDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 822
Query: 1284 NALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGL 1108
A+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP GL
Sbjct: 823 GAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGL 882
Query: 1107 PVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACN 928
PVVQPYR++GRHLIKTSLQ+LTL+R+T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVAC
Sbjct: 883 PVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACR 942
Query: 927 KAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLP 748
+AGLNFAGVHDSYWTHACDVD +NRILREKFVELYE PILE LLESFQ S+P L FPPLP
Sbjct: 943 RAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLP 1002
Query: 747 ERGDFDLKEVLESPYFFN 694
ERGDFD+++VLESPYFFN
Sbjct: 1003 ERGDFDMRDVLESPYFFN 1020
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 1380 bits (3572), Expect = 0.0
Identities = 699/1000 (69%), Positives = 800/1000 (80%), Gaps = 12/1000 (1%)
Frame = -3
Query: 3657 SSKQKSTVMWRRVVKQIASSRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEM-------- 3502
S ++ S+VMWR V KQ S FS++ F ++ L+ V F +M
Sbjct: 39 SPEKISSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEV 98
Query: 3501 GICRNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVD 3322
G R G+IL E+ MGR F N + P+GY++ VAEAV STD EEDVS+V+
Sbjct: 99 GSGRIGEILNHEDYMGRTSFGVLKNDNFWC-----PRGYAT-VAEAVSSTDVEEDVSIVE 152
Query: 3321 EIQ-VXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKE 3145
EIQ + +N+ + GMG GKY+ +L+ RQ+KIET++W+QAA E
Sbjct: 153 EIQELLQEMKKEEQREGENGGGRNRRRVARGMGSGKYR--MLKMRQVKIETEAWEQAANE 210
Query: 3144 YKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPA 2965
Y+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA+EQE CR KH+ AYAPYFDQLPA
Sbjct: 211 YRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPA 270
Query: 2964 DMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXX 2785
DMMAVITMHKLMGLLMTGG+ G RVVQAAC IG+AIE EVRIH
Sbjct: 271 DMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKE 330
Query: 2784 XEV--EVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIE 2611
E E + VT EQ KLR KVTDL+KKQKL VR IV+GQDD KPWGQ+ AKVG +IE
Sbjct: 331 DEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIE 390
Query: 2610 LLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKT 2431
LL +TAYIQ P +QL D PPDI PAF H+L+ + K +K G+IEC+PLV +GLE+T
Sbjct: 391 LLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERT 450
Query: 2430 ARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEA 2251
ARHMVIPYMPMLVPP+ WTGYDKGA+ FLPSY MRTHGA+QQR+ +KR P+KQLE VFEA
Sbjct: 451 ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 510
Query: 2250 LNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXX 2071
L+TLGNTKWRVN R+L V+DRIW+ GGRLADLVDR DVP+P +P+TEDE +L
Sbjct: 511 LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVR 570
Query: 2070 XXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCR 1891
K+N ERHSQRCD+ELKL+VAR+MKDE+GF+YPHNVDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 571 NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 630
Query: 1890 GILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEG 1711
GILEFAEGR LG SGL WLKIHLANLYAGGVDKLS++GR+AFTENHLDDIFDSAD+PLEG
Sbjct: 631 GILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEG 690
Query: 1710 RRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGA 1531
RRWWL AEDPFQCLAVCINL+EA RSSSP+ +SH+P+HQDGSCNGLQHYAALGRD LGA
Sbjct: 691 RRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGA 750
Query: 1530 AAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVM 1351
AAVNLVA +KPADVYSGIAARVL I+R DA++DP V P+ALRA+LL++ VDRKLVKQTVM
Sbjct: 751 AAVNLVAREKPADVYSGIAARVLVIIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVM 810
Query: 1350 TSVYGVTYIGARDQIKRRLKERNA-LPDEELFGAACYAAKTTLTALGEMFQAARSIMSWL 1174
TSVYGVTYIGARDQIKRRLKER A + + ELFGA+CYAAK TLTALGEMFQAAR IMSWL
Sbjct: 811 TSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWL 870
Query: 1173 GDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTA 994
G+CAK+IASENQPVRWTTP GLPVVQPYR+LGRH +KTSLQ+LTL+R+T+K+MVKRQRTA
Sbjct: 871 GECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTA 930
Query: 993 FPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETP 814
FPPNFVHSLDGSHMMMTAVAC KAGL FAGVHDSYWTHACDVD MNRILREKFVELYE P
Sbjct: 931 FPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMP 990
Query: 813 ILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
ILENLL+SFQ+SFPKL PPLPERGDFDL+EVL SPYFFN
Sbjct: 991 ILENLLDSFQKSFPKLVLPPLPERGDFDLREVLGSPYFFN 1030
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1380 bits (3572), Expect = 0.0
Identities = 700/1036 (67%), Positives = 816/1036 (78%), Gaps = 14/1036 (1%)
Frame = -3
Query: 3759 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIAS------- 3601
M+S +T I N+F DKP+ + I+ S +MWR ++KQ++S
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGL---DINRYHNSPIMWRNIIKQLSSRTPQKLL 52
Query: 3600 ------SRKLMRFSQSTIFQEKTRPFELKNGVNFRSFEMGICRNGKILFGEEDMGRPGFR 3439
+ + F Q ++F++ T+ F ++ + MG G+ L G+E + RP +
Sbjct: 53 FSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLLK 111
Query: 3438 CFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNR 3259
N + + F S + A AV STD EEDVSVVDE+Q R
Sbjct: 112 ---NQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRR 168
Query: 3258 QNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKS 3079
+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLPY+KS
Sbjct: 169 RKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKS 226
Query: 3078 LFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPG 2899
LFLGWF+PL D IA+EQELC QGK + AYA Y QLPADMMAVITMHKLMGLLMTGGD G
Sbjct: 227 LFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHG 286
Query: 2898 STRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDL 2719
+ RVVQAA IG+AIE EVRIH E + + VT+EQ KLR KVT+L
Sbjct: 287 TARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKKVTNL 345
Query: 2718 MKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRP 2539
MKKQKL V IVR QDD KPWGQ+ AKVG LIELL++TAYIQPP NQLA PPDIRP
Sbjct: 346 MKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRP 405
Query: 2538 AFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKG 2359
AF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGYDKG
Sbjct: 406 AFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 465
Query: 2358 AYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWA 2179
+L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLG+TKWR+NKR+L VIDRIWA
Sbjct: 466 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWA 525
Query: 2178 SGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVAR 1999
GGRLADLVDR+D P+P EPDTEDE K+N ERHSQRCD+ELKLAVAR
Sbjct: 526 GGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVAR 585
Query: 1998 QMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLA 1819
+MKDE+GFFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+L FAEGRPLG SGLRWLKIHLA
Sbjct: 586 KMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLA 645
Query: 1818 NLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAF 1639
NL+AGGV+KLS +GRIAFTENH+DDIFDSAD+PLEGRRWWL AEDPFQCLAVCINLSEA
Sbjct: 646 NLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAV 705
Query: 1638 RSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLE 1459
RSSSP+ ++SH+P+HQDGSCNGLQHYAALGRD+LGAAAVNLVAG+KPADVYSGIAARVL+
Sbjct: 706 RSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLD 765
Query: 1458 IMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNA 1279
IM+ DA++DP P+A+RAR L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A
Sbjct: 766 IMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 825
Query: 1278 LPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPV 1102
+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP GLPV
Sbjct: 826 IADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPV 885
Query: 1101 VQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKA 922
VQPYR++GRHLIKTSLQ+LTL+++T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVAC +A
Sbjct: 886 VQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRA 945
Query: 921 GLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLPER 742
GLNFAGVHDSYWTHACDVD +NRILREKFVELYETPILE LLESFQ S+P L FPPLPER
Sbjct: 946 GLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPER 1005
Query: 741 GDFDLKEVLESPYFFN 694
GDFDL++VLESPYFFN
Sbjct: 1006 GDFDLRDVLESPYFFN 1021
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1379 bits (3568), Expect = 0.0
Identities = 701/1013 (69%), Positives = 802/1013 (79%), Gaps = 33/1013 (3%)
Frame = -3
Query: 3633 MWRRVVKQIASSRK--------LMRFSQSTIFQEKTRPFEL---------KNGVNFRSFE 3505
MWR + KQ A SRK L+ FSQ + KTRP + G++ S
Sbjct: 1 MWRYISKQ-AYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIF 59
Query: 3504 MGICRNGKILFG--EEDMGRPGFRCFPNPIGFS-------------GFSNHPKGYSSSVA 3370
I R + L G EE P N + S G + Y S+ A
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA-A 118
Query: 3369 EAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRR 3190
EA+ ST E+ +DEIQ + QPK +GGMG+GKY LLRRR
Sbjct: 119 EAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYN--LLRRR 172
Query: 3189 QMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQG 3010
Q+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA EQ+LC +G
Sbjct: 173 QIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEG 232
Query: 3009 KHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHX 2830
K+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 233 KNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHR 292
Query: 2829 XXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWG 2650
+ D + KE+ ++R KV LMKKQKL QVR IV+ QDD KPWG
Sbjct: 293 FLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351
Query: 2649 QETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGII 2470
Q+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK ++ MK R+ G+I
Sbjct: 352 QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVE--TMKGSRRYGVI 409
Query: 2469 ECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIK 2290
+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY MRTHGA+QQREA+K
Sbjct: 410 QCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVK 469
Query: 2289 RAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTE 2110
R P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADLVDREDVP+P EPD E
Sbjct: 470 RVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAE 529
Query: 2109 DEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPM 1930
DE ++ K+N ERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYPM
Sbjct: 530 DEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPM 589
Query: 1929 HPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHL 1750
HPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+ENH+
Sbjct: 590 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHV 649
Query: 1749 DDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGL 1570
+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S+MPIHQDGSCNGL
Sbjct: 650 EDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGL 709
Query: 1569 QHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLI 1390
QHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP DPN +RARLLI
Sbjct: 710 QHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI 769
Query: 1389 NHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALG 1213
N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF AACYAAKTTLTALG
Sbjct: 770 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALG 829
Query: 1212 EMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKR 1033
EMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R
Sbjct: 830 EMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQR 889
Query: 1032 DTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNR 853
+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDSYWTHA DVD MN+
Sbjct: 890 ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 949
Query: 852 ILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
ILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 950 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1378 bits (3566), Expect = 0.0
Identities = 701/1013 (69%), Positives = 801/1013 (79%), Gaps = 33/1013 (3%)
Frame = -3
Query: 3633 MWRRVVKQIASSRK--------LMRFSQSTIFQEKTRPFEL---------KNGVNFRSFE 3505
MWR + K A SRK L+ FSQ + KTRP + G++ S
Sbjct: 1 MWRYISKH-AYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIF 59
Query: 3504 MGICRNGKILFG--EEDMGRPGFRCFPNPIGFS-------------GFSNHPKGYSSSVA 3370
I R + L G EE P N + S G + Y S+ A
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA-A 118
Query: 3369 EAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRR 3190
EA+ ST E+ +DEIQ + QPK +GGMG+GKY LLRRR
Sbjct: 119 EAIASTSEED----IDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYN--LLRRR 172
Query: 3189 QMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQG 3010
Q+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA EQ+LC +G
Sbjct: 173 QIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEG 232
Query: 3009 KHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHX 2830
K+RGAYAP+FDQLPA+MMAVITMHKLMGLLMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 233 KNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHR 292
Query: 2829 XXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWG 2650
+ D + KE+ +LR KV LMKKQKL QVR IV+ QDD KPWG
Sbjct: 293 FLEKTKKSNALSGDLEDTPGD-IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351
Query: 2649 QETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGII 2470
Q+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK ++ MK R+ G+I
Sbjct: 352 QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVE--TMKGSRRYGVI 409
Query: 2469 ECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIK 2290
+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY MRTHGA+QQREA+K
Sbjct: 410 QCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVK 469
Query: 2289 RAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTE 2110
R P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADLVDREDVP+P EPD E
Sbjct: 470 RVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAE 529
Query: 2109 DEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPM 1930
DE ++ K+N ERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYPM
Sbjct: 530 DEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPM 589
Query: 1929 HPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHL 1750
HPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+ENH+
Sbjct: 590 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHV 649
Query: 1749 DDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGL 1570
+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S+MPIHQDGSCNGL
Sbjct: 650 EDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGL 709
Query: 1569 QHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLI 1390
QHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP DPN +RARLLI
Sbjct: 710 QHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI 769
Query: 1389 NHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALG 1213
N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF AACYAAKTTLTALG
Sbjct: 770 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALG 829
Query: 1212 EMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKR 1033
EMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R
Sbjct: 830 EMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQR 889
Query: 1032 DTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNR 853
+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDSYWTHA DVD MN+
Sbjct: 890 ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 949
Query: 852 ILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
ILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 950 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1377 bits (3565), Expect = 0.0
Identities = 701/1038 (67%), Positives = 816/1038 (78%), Gaps = 16/1038 (1%)
Frame = -3
Query: 3759 MTSYRTIIFSANLTNKFNLSISIDKPSLIIFHPISSKQKSTVMWRRVVKQIASSRKLMRF 3580
M+S +T I N+F DKP+ + +P + S +MWR ++KQ++S R
Sbjct: 1 MSSTKTPISLTIKLNQFT-----DKPTGLDINPYHN---SPIMWRNIIKQLSS-----RT 47
Query: 3579 SQSTIFQEKTRPFEL---------KNGVNFRSFEMGICRNGKILFGEEDMGR--PGFRCF 3433
Q +F K R + K+ FRS C N I+ G +++G PG
Sbjct: 48 PQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSN--IVMGFQNLGEYLPGDEFL 105
Query: 3432 PNPIGFSGFSNH---PKGYSS-SVAEAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXL 3265
P+ + +N+ K Y+S + A AV STD EEDVSVVDE+
Sbjct: 106 SRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAF 165
Query: 3264 NRQNQPKGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYM 3085
R+ Q GMG KYQ L+RRQ+K+ET++W+QAAKEYKELL DMCEQKLAPNLPY+
Sbjct: 166 RRRKQRMLTSGMGHRKYQ--TLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYV 223
Query: 3084 KSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGD 2905
KSLFLGWF+PL D IA+EQELC QGK + AYA YF QLPADMMAVITMHKLMGLLMTGGD
Sbjct: 224 KSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGD 283
Query: 2904 PGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVT 2725
G+ RVVQAA IG+AIE EVRIH E + + VT+EQ KLR KVT
Sbjct: 284 HGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKE-DGEHVTQEQEKLRKKVT 342
Query: 2724 DLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDI 2545
+LMKKQKL V IVR QDD KPWGQ+ AKVG LI+LL++TAYIQPP NQLA PPDI
Sbjct: 343 NLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDI 402
Query: 2544 RPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYD 2365
PAF+HS++ + K R+ GII+CD LV +GLE+TARHMVIPYMPMLVPP+ WTGYD
Sbjct: 403 PPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYD 462
Query: 2364 KGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRI 2185
KG +L+LPSY MRTHGARQQREA+KRA + QL+ VFEAL+TLGNTKWR+NKR+L V+DRI
Sbjct: 463 KGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRI 522
Query: 2184 WASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAV 2005
WA GGRLADLVDR+D P+P EPDTEDE L K+N ERHSQRCD+ELKLAV
Sbjct: 523 WAGGGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAV 582
Query: 2004 ARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIH 1825
AR+MKDE+ FFYPHNVDFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG SGLRWLKIH
Sbjct: 583 ARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIH 642
Query: 1824 LANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSE 1645
LANL+AGGV+KLS +GRI FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLAVCINLSE
Sbjct: 643 LANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSE 702
Query: 1644 AFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARV 1465
A RSSSP+ +VSH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPA+ YSGIAARV
Sbjct: 703 AVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARV 762
Query: 1464 LEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 1285
L+IM+ DA++DP P+A+RAR+L+N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER
Sbjct: 763 LDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER 822
Query: 1284 NALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGL 1108
A+ D+ ELFGAACYAAK TLTALGEMF+AARSIM+WLG+CAK+IASEN+PVRWTTP GL
Sbjct: 823 GAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGL 882
Query: 1107 PVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACN 928
PVVQPYR++GRHLIKTSLQ+LTL+R+T+K+MVKRQRTAFPPNF+HSLDGSHMMMTAVAC
Sbjct: 883 PVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACR 942
Query: 927 KAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLP 748
+AGLNFAGVHDSYWTHACDVD +NRILREKFVELYE PILE LLESFQ S+P L FPPLP
Sbjct: 943 RAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLP 1002
Query: 747 ERGDFDLKEVLESPYFFN 694
ERGDFD+++VLESPYFFN
Sbjct: 1003 ERGDFDMRDVLESPYFFN 1020
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1372 bits (3550), Expect = 0.0
Identities = 699/1013 (69%), Positives = 799/1013 (78%), Gaps = 33/1013 (3%)
Frame = -3
Query: 3633 MWRRVVKQIASSRK--------LMRFSQSTIFQEKTRPFEL---------KNGVNFRSFE 3505
MWR + KQ A SRK L+ FSQ + KTRP + G++ S
Sbjct: 1 MWRYISKQ-AYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIF 59
Query: 3504 MGICRNGKILFG--EEDMGRPGFRCFPNPIGFS-------------GFSNHPKGYSSSVA 3370
I R + L G EE P N + S G + Y S+ A
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSA-A 118
Query: 3369 EAVPSTDTEEDVSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVGGMGLGKYQYQLLRRR 3190
EA+ ST E+ DEIQ + QPK +GGMG+GKY LLRRR
Sbjct: 119 EAIASTSEED----TDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYN--LLRRR 172
Query: 3189 QMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQG 3010
Q+K+ET++W++AAKEY+ELL DMCEQKLAPNLPYMKSLFLGWF+PL D IA EQ+LC +G
Sbjct: 173 QIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEG 232
Query: 3009 KHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQAACHIGEAIEHEVRIHX 2830
K+RGA AP+FDQLPA+MMAVITMHKLMG LMTGG GS RVVQAA HIGEAIEHE RIH
Sbjct: 233 KNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHR 292
Query: 2829 XXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWG 2650
+ D + KE+ ++R KV LMKKQKL QVR IV+ QDD KPWG
Sbjct: 293 FLEKTKKSNALSGDLEDTPGD-IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351
Query: 2649 QETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGII 2470
Q+ KVGC LI++LM TAYIQPP +QL D PPDIRPAF+H+LK ++ MK R+ G+I
Sbjct: 352 QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVE--TMKGSRRYGVI 409
Query: 2469 ECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIK 2290
+CDPLVR+GL+KTARHMVIPYMPMLVPP +W GYDKGAYLFLPSY MRTHGA+QQREA+K
Sbjct: 410 QCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVK 469
Query: 2289 RAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTE 2110
R P+KQLE VF+AL+TLGNTKWR+N+++L ++DRIWASGGRLADLVDREDVP+P EPD E
Sbjct: 470 RVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAE 529
Query: 2109 DEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPM 1930
DE ++ K+N ERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYPM
Sbjct: 530 DEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPM 589
Query: 1929 HPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHL 1750
HPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+ENH+
Sbjct: 590 HPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHV 649
Query: 1749 DDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGL 1570
+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EA RS SP+ A+S+MPIHQDGSCNGL
Sbjct: 650 EDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGL 709
Query: 1569 QHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLI 1390
QHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM+ DA KDP DPN +RARLLI
Sbjct: 710 QHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI 769
Query: 1389 NHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALG 1213
N VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER + D+ ELF AACYAAKTTLTALG
Sbjct: 770 NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALG 829
Query: 1212 EMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKR 1033
EMF+AARSIMSWLGDCAK+IA EN PVRWTTP GLPVVQPYR+LGRHLIKTSLQ+LTL+R
Sbjct: 830 EMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQR 889
Query: 1032 DTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNR 853
+TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC ++GL+FAGVHDSYWTHA DVD MN+
Sbjct: 890 ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNK 949
Query: 852 ILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
ILREKFVELY+ PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 950 ILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|590698457|ref|XP_007045722.1| DNA-directed RNA
polymerase isoform 1 [Theobroma cacao]
gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
Length = 996
Score = 1372 bits (3550), Expect = 0.0
Identities = 708/1011 (70%), Positives = 802/1011 (79%), Gaps = 31/1011 (3%)
Frame = -3
Query: 3633 MWRRVVKQIA----------------SSRKLMRFSQSTIFQEKTRPFELKN----GVNFR 3514
MWR +VKQ A SS FSQ ++F K R E + G F
Sbjct: 1 MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60
Query: 3513 SF-EMGICRNGKILFGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEED 3337
F ++G+ + K G+ + +PG +P+ FSG + KGY+S+ AEAV ST EED
Sbjct: 61 GFRQIGVFSSQKDDLGKFSLNQPG-----DPLRFSGKFWNLKGYASA-AEAVIST--EED 112
Query: 3336 VSVVDEIQVXXXXXXXXXXXXXXLNRQNQPKGVG-GMGLGKYQYQLLRRRQMKIETQSWD 3160
+S +EI L QPK V GMG+ KY L++RQ+KIET++W+
Sbjct: 113 MSGSEEIHELMEAMAREEKKMSFLV---QPKKVAEGMGVAKYN--TLKKRQIKIETEAWE 167
Query: 3159 QAAKEYKELLADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYF 2980
+AAKEY+ELL DMCE KLAPNLPY+KSLFLGWF+PL D I EQELC++ R ++A YF
Sbjct: 168 EAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKENC-RISHAAYF 226
Query: 2979 DQLPADMMAVITMHKLMGLLMTG-GDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXX 2803
++L ADMMAV+TMHKLMGLLMT G RVVQAAC IGEAIEHE +I
Sbjct: 227 NELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHEAKIQSFLGKTKKKK 286
Query: 2802 XXXXXXXEVEVDPVT-------KEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQE 2644
E +PVT K+Q KLR KVT L+KKQK+HQVR IV+G D K WGQE
Sbjct: 287 TTDKKPDG-ESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQE 345
Query: 2643 THAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIEC 2464
H KVGC LI+LL+ AYIQPPV+QL D PPDIRPAF+HSLK I K K R+ G+IEC
Sbjct: 346 AHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIEC 405
Query: 2463 DPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRA 2284
D LVR+GLEKTARHMVIPYMPMLVPP NWTGYD+GAYLFLPSY MRTHGA+QQRE +KR
Sbjct: 406 DLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRT 465
Query: 2283 PQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDE 2104
P+KQLE +FEAL+TLGNTKWR+NKR+L V+DR+WA+GGR+A LVDREDVP+P +PDTEDE
Sbjct: 466 PRKQLEPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDE 525
Query: 2103 PELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHP 1924
E+ KQN+ERHS RCDVELKLAVAR+M+DEDGF+YPHN+DFRGRAYPMHP
Sbjct: 526 AEIQKWKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHP 585
Query: 1923 YLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDD 1744
YLNHLGSDLCRG+LEFAEGRPLG SGLRWLKIHLANLYAGGVDKLSY+GRIAFTENHLDD
Sbjct: 586 YLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYEGRIAFTENHLDD 645
Query: 1743 IFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQH 1564
IFDSADRPLEGRRWWL AEDPFQCLA CINLSEA RSSSP+ +SHMP+HQDGSCNGLQH
Sbjct: 646 IFDSADRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQH 705
Query: 1563 YAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINH 1384
YAALGRDKLGAA+VNLVAG+KPADVYSGIAARV++IMR DAEKDP ++P+AL ARLLIN
Sbjct: 706 YAALGRDKLGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQ 765
Query: 1383 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEM 1207
VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A+ D+ E+F A+CYAA+TTLTALGEM
Sbjct: 766 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEM 825
Query: 1206 FQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDT 1027
FQAARSIM+WLG+CAKVI+SENQPVRW TP GLPVVQPYRQLGRHLIKTSLQVLTL+R+T
Sbjct: 826 FQAARSIMNWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRET 885
Query: 1026 DKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRIL 847
DK+M KRQRTAFPPNFVHSLDGSHMMMTAVAC KAGLNFAGVHDSYWTHACDVD MNRIL
Sbjct: 886 DKVMAKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRIL 945
Query: 846 REKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
REKFVELYE PILENLLESFQ+SFP L FPPLPERGDFDL+EVLESPYFFN
Sbjct: 946 REKFVELYEAPILENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996
>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
DNA-directed RNA polymerase 2, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 997
Score = 1371 bits (3548), Expect = 0.0
Identities = 689/1002 (68%), Positives = 793/1002 (79%), Gaps = 22/1002 (2%)
Frame = -3
Query: 3633 MWRRVVKQIASSRKLMRFS-------QSTIFQEKTRPFELKNGVNFRSFEMGICRNGKIL 3475
MWR ++ + S K + FS Q +K R E + + +G R +
Sbjct: 1 MWRNFARRTSLSSKKLNFSSDCTQLNQDLDILQKVRHPEAQTLLCSPYSFLGSRRISGLS 60
Query: 3474 FGEEDMGRPGFRCFPNPIGFSGFSNHPKGYSSSVAEAVPSTDTEEDVSVVDEIQVXXXXX 3295
+ +P F NP GFS F KGY+++ A+ + STD E D S DE+Q
Sbjct: 61 SQNHEFIKPSFTNLTNPFGFSHFLF--KGYATAAAQVIASTD-ESDFSGCDELQEQIEEI 117
Query: 3294 XXXXXXXXXLNRQNQP-----KGVGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELL 3130
RQ Q K + GMG+GKY +L++RQ+K+ET++W++AA+EY+ELL
Sbjct: 118 NKHHKKMDAHFRQQQQQQQRKKTIAGMGIGKYT--ILKKRQIKMETEAWEEAAREYQELL 175
Query: 3129 ADMCEQKLAPNLPYMKSLFLGWFQPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAV 2950
DMCEQKLAPNLPY+KSLFLGWF+PL D IA+EQEL R+ ++ ++ PYFD LPADMMAV
Sbjct: 176 TDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAKEQELSREKNNKLSHGPYFDALPADMMAV 235
Query: 2949 ITMHKLMGLLMT-GGDPGSTRVVQAACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEV- 2776
ITMHKLMGLLMT G GS RVVQAAC +GEAIEHE RIH
Sbjct: 236 ITMHKLMGLLMTTNGGNGSVRVVQAACAVGEAIEHEARIHRFLEKTKKKKKSTKNEEPEG 295
Query: 2775 EVDPVT-------KEQVKLRHKVTDLMKKQKLHQVRLIVRGQDDMKPWGQETHAKVGCHL 2617
+++PVT KEQ KLR KVT+LMKKQK+ QVR + +G DD PWGQE KVGC L
Sbjct: 296 KLEPVTSDAEKLAKEQEKLRKKVTELMKKQKVQQVRGLTKGHDDSMPWGQEAQVKVGCRL 355
Query: 2616 IELLMRTAYIQPPVNQLADGPPDIRPAFIHSLKMIKKGAMKTGRKLGIIECDPLVRQGLE 2437
I+LL+ TAYIQPPVNQL DG PDIRPAF+H+LK + K KT R+ G+IECDP+VR GLE
Sbjct: 356 IQLLIETAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLE 415
Query: 2436 KTARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYCMRTHGARQQREAIKRAPQKQLEHVF 2257
K+ARHMVIPYMPMLVPP+NW GYD+GAYLFLPSY MRTHGA+QQR A+KR P KQLE V+
Sbjct: 416 KSARHMVIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVY 475
Query: 2256 EALNTLGNTKWRVNKRMLDVIDRIWASGGRLADLVDREDVPIPMEPDTEDEPELXXXXXX 2077
EALNTLGNTKWR+NK++L V+DRIWA+GGRLA L+DRED P+P E +TEDE E+
Sbjct: 476 EALNTLGNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWK 535
Query: 2076 XXXXXKQNSERHSQRCDVELKLAVARQMKDEDGFFYPHNVDFRGRAYPMHPYLNHLGSDL 1897
K+NSERHSQRCD+ELKLAVAR+MKDEDGF+YPHN+DFRGRAYPMHP+LNHLGSD+
Sbjct: 536 VKNVKKENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDM 595
Query: 1896 CRGILEFAEGRPLGNSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLDDIFDSADRPL 1717
CRGILEFAEGRPLG SG RWLKIHLAN+YAGGVDKLSY+GR+AFTENHLD IFDSADRPL
Sbjct: 596 CRGILEFAEGRPLGKSGFRWLKIHLANVYAGGVDKLSYEGRVAFTENHLDYIFDSADRPL 655
Query: 1716 EGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQDAVSHMPIHQDGSCNGLQHYAALGRDKL 1537
EGRRWWLGAEDPFQCLA C NL+EAFRSSSP+ +SHMPIHQDGSCNGLQHYAALGRDKL
Sbjct: 656 EGRRWWLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKL 715
Query: 1536 GAAAVNLVAGDKPADVYSGIAARVLEIMRVDAEKDPVVDPNALRARLLINHVDRKLVKQT 1357
GAAAVNLV+G+KPADVYSGIAARVL+IMR DAEKDP +PNAL A+LLIN VDRKLVKQT
Sbjct: 716 GAAAVNLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINEVDRKLVKQT 775
Query: 1356 VMTSVYGVTYIGARDQIKRRLKERNALPDE-ELFGAACYAAKTTLTALGEMFQAARSIMS 1180
VMTSVYGVTYIGARDQIKRRLKER+A+ D+ L+ A+CYAAKTTL AL EMF+ ARSIM+
Sbjct: 776 VMTSVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMA 835
Query: 1179 WLGDCAKVIASENQPVRWTTPYGLPVVQPYRQLGRHLIKTSLQVLTLKRDTDKIMVKRQR 1000
WLG+CAKVIASENQPV+WTTP GLPVVQPYRQLGRHLIKTSLQ+L L+++TDKIMVKRQR
Sbjct: 836 WLGECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQR 895
Query: 999 TAFPPNFVHSLDGSHMMMTAVACNKAGLNFAGVHDSYWTHACDVDVMNRILREKFVELYE 820
TAFPPNFVHSLDGSHMMMTAVAC AGLNFAGVHDSYWTHACDVD MNRILRE FVELYE
Sbjct: 896 TAFPPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYE 955
Query: 819 TPILENLLESFQESFPKLTFPPLPERGDFDLKEVLESPYFFN 694
PILENLLE FQ+SFPKL FPPLP+RGDFDL++VLESPYFFN
Sbjct: 956 APILENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997
>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
gi|548846502|gb|ERN05778.1| hypothetical protein
AMTR_s00006p00254180 [Amborella trichopoda]
Length = 1006
Score = 1356 bits (3509), Expect = 0.0
Identities = 687/970 (70%), Positives = 772/970 (79%), Gaps = 16/970 (1%)
Frame = -3
Query: 3555 KTRPFELKNGVNFRSFEMGICRNGKILFGEEDMGRPGF--RCFPNPIGFSGFSNHP---- 3394
++ PF+ G+ R+FE+G N + FG E R G NP+ F+ F+
Sbjct: 40 ESAPFDRSIGLKMRNFELGSRCNSQ--FGGELQDRDGKMGNGLKNPVFFNCFNGRRDPFF 97
Query: 3393 ------KGYSSSVAEAVPSTDTEEDVSV-VDEIQVXXXXXXXXXXXXXXLNRQN-QPK-G 3241
KG++++ AEAV STD +ED S +E + R+ +PK G
Sbjct: 98 LRGCSLKGFANA-AEAVVSTDIDEDCSSGSEETHLVLPTNGYNSNGAIREEREKLKPKNG 156
Query: 3240 VGGMGLGKYQYQLLRRRQMKIETQSWDQAAKEYKELLADMCEQKLAPNLPYMKSLFLGWF 3061
+GK +Y LR RQ+KIET++WDQAAKEY+EL+ DMCE KLAPNLPYMKSLFLGWF
Sbjct: 157 YKDGVMGKAKYLALRTRQVKIETEAWDQAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWF 216
Query: 3060 QPLCDCIAQEQELCRQGKHRGAYAPYFDQLPADMMAVITMHKLMGLLMTGGDPGSTRVVQ 2881
+PL D IA EQ + GK++GAYAPYF QLPADMM+VITMHKLMGLLMTG D GSTR+VQ
Sbjct: 217 EPLRDIIASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLLMTGTDNGSTRLVQ 276
Query: 2880 AACHIGEAIEHEVRIHXXXXXXXXXXXXXXXXXEVEVDPVTKEQVKLRHKVTDLMKKQKL 2701
AAC IGEAIE EV+IH E + KE+ LR +VT+LMKKQKL
Sbjct: 277 AACQIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNLMKKQKL 336
Query: 2700 HQVRLIVRGQDDMKPWGQETHAKVGCHLIELLMRTAYIQPPVNQLADGPPDIRPAFIHSL 2521
HQVR IV+GQDD KPWG + HAKVG LIELL+ TAY+QPPV+Q A+GPPDIRPAF H L
Sbjct: 337 HQVRKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRPAFRHIL 396
Query: 2520 KMIKKGAMKTGRKLGIIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGYDKGAYLFLP 2341
K + K K R+ G+IECDPL+ +GLEKTARHMVIPYMPMLVPP+ WTGYD+G +LFLP
Sbjct: 397 KTVTKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRGGHLFLP 456
Query: 2340 SYCMRTHGARQQREAIKRAPQKQLEHVFEALNTLGNTKWRVNKRMLDVIDRIWASGGRLA 2161
SY MR HGARQQR AIK AP+KQL V+EAL+TLG TKWRVNKR+L VIDRIWA GGRLA
Sbjct: 457 SYVMRIHGARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLGVIDRIWADGGRLA 516
Query: 2160 DLVDREDVPIPMEPDTEDEPELXXXXXXXXXXXKQNSERHSQRCDVELKLAVARQMKDED 1981
DLVDREDV IP +PDTEDE ++ K+NSE HSQRCD ELKL VAR+MKDE+
Sbjct: 517 DLVDREDVAIPEKPDTEDEAKIREWKWLVKGARKKNSELHSQRCDTELKLNVARRMKDEE 576
Query: 1980 GFFYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGNSGLRWLKIHLANLYAGG 1801
GF YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLANLYAGG
Sbjct: 577 GFHYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGG 636
Query: 1800 VDKLSYDGRIAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAVCINLSEAFRSSSPQ 1621
VDKLSYDGR+ F ENHL+DIFDSADRPLEG RWWLGAEDPFQCLA C+NLSEA RSSSP
Sbjct: 637 VDKLSYDGRLEFVENHLEDIFDSADRPLEGGRWWLGAEDPFQCLAACVNLSEALRSSSPD 696
Query: 1620 DAVSHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRVDA 1441
+SHMP+HQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSGIA RVL+IMR D+
Sbjct: 697 TTISHMPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSGIAERVLDIMRRDS 756
Query: 1440 EKDPVVDPNALRARLLINHVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNALPDE-E 1264
+KDP DPN RA+LL+N VDRKLVKQTVMTSVYGVTY+GARDQI RRLKER A+ DE E
Sbjct: 757 QKDPTSDPNVARAKLLLNQVDRKLVKQTVMTSVYGVTYVGARDQIMRRLKERGAITDEKE 816
Query: 1263 LFGAACYAAKTTLTALGEMFQAARSIMSWLGDCAKVIASENQPVRWTTPYGLPVVQPYRQ 1084
LF A+CY AK TLTALGEMFQAARSIMSWLGDCAKVIASEN+ VRWTTP GLPVVQPYR+
Sbjct: 817 LFSASCYTAKVTLTALGEMFQAARSIMSWLGDCAKVIASENETVRWTTPLGLPVVQPYRK 876
Query: 1083 LGRHLIKTSLQVLTLKRDTDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKAGLNFAG 904
LGRHLIKTSLQVL L+ +TDK+MVKRQRTAFPPNFVHSLDGSHMMMTA+AC KAGLNFAG
Sbjct: 877 LGRHLIKTSLQVLALRCETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAG 936
Query: 903 VHDSYWTHACDVDVMNRILREKFVELYETPILENLLESFQESFPKLTFPPLPERGDFDLK 724
VHDSYWTHACDVD MNRILREKFVELY TPILENLL +FQE FPKL+FPPLP RGDFDLK
Sbjct: 937 VHDSYWTHACDVDEMNRILREKFVELYSTPILENLLRNFQELFPKLSFPPLPARGDFDLK 996
Query: 723 EVLESPYFFN 694
EVL+SPYFFN
Sbjct: 997 EVLDSPYFFN 1006