BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00002906
         (2257 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   665   0.0  
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   662   0.0  
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   652   0.0  
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   651   0.0  
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   646   0.0  
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   644   0.0  
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   644   0.0  
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   639   e-180
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   639   e-180
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   631   e-178
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   627   e-177
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   622   e-175
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   620   e-175
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   618   e-174
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   579   e-162
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A...   579   e-162
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   575   e-161
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   572   e-160
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   572   e-160
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   570   e-159

>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  665 bits (1716), Expect = 0.0
 Identities = 374/672 (55%), Positives = 446/672 (66%), Gaps = 4/672 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRTG  GRNRHS PPSRR+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDD-HRXXXXXXXXXXXXLYKDDYDREQLAQ 377
            GSQVPLKKRLDP E+                  H             LYK++ DR +LAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 378  LTELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPR-PTPXXXXXXXXXXXX 551
            +TEL+RE+ILS+RA +R D +  E++R+K ++ + ++  KETP  P+             
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 552  XXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXX 731
               KDDALNELRAKR+KQQDP+                   P++RKP  A          
Sbjct: 181  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSLSSSSQSD 240

Query: 732  XXXXXXXXXRNRDEDIAGNDDLGDSDVYRPID-KENLTFEDIKDITIRRSRLAKWFVEPF 908
                      + DE   G+  + DSD  R +   +  TF+DIK+ITIRRS+LAKWF+EPF
Sbjct: 241  SESRS----NSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPF 296

Query: 909  FEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASE 1088
            FEELIVGC+VRVGIG  ++K+  +YRLCMVRNVDAT+P+R YKLENK+T+KYLN+ W +E
Sbjct: 297  FEELIVGCYVRVGIG--RSKSGPIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNE 354

Query: 1089 SSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAAT 1268
            SSAARWQMA +SDSPP EEEF +L+RE+++ GGRMPS+ DVLEK+EA+QK  T+VYSAAT
Sbjct: 355  SSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAAT 414

Query: 1269 VKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTK 1448
            VKQMLQEKKS SSRPLNIAAEKDRLRR+LE+AQS+  D AEVERI+ RLQ+LE  SRQ +
Sbjct: 415  VKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKH-DEAEVERIKMRLQQLE-ASRQAQ 472

Query: 1449 QKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG 1628
            +KDAKAVRL+EMN++NRAENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYYV+ P 
Sbjct: 473  EKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPP 532

Query: 1629 GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVD 1808
            G D AA+A  +                                       KLVDTSAPVD
Sbjct: 533  GADAAAVANGD----RIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVD 588

Query: 1809 LGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTL 1988
             GTESN LH FE+ ISL  LQ+          FMARKQRIEATVG +VPENDGRRH+LTL
Sbjct: 589  EGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTL 648

Query: 1989 TVGDYKRRRGLL 2024
            TV DYKRRRGLL
Sbjct: 649  TVSDYKRRRGLL 660


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  662 bits (1708), Expect = 0.0
 Identities = 372/671 (55%), Positives = 447/671 (66%), Gaps = 3/671 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRTG  GRNR++ PPSRR+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXX-NDDHRXXXXXXXXXXXXLYKDDYDREQLAQ 377
            GSQVPLKKRLDPTE+               N D              LYK++ DR +LAQ
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 378  LTELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPR-PTPXXXXXXXXXXXX 551
            ++EL+REMILS+RA ++ D  L ER+R+K +S + T+  KETP  P+             
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 552  XXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXX 731
               KDDALNEL+A+R+KQQDP+                   PI+RK   +          
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSSES 240

Query: 732  XXXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPFF 911
                      + DE   G+  + DSD       +  TF+DI++ITIRRS+LAKWF+EP+F
Sbjct: 241  ESRS-----HSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWF 295

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            EELIVGCFVRVGIG  ++K+  +YRLC+VRNVDA DPDR YKLENK+T+KYLN+ W +ES
Sbjct: 296  EELIVGCFVRVGIG--RSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNES 353

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA +SDS P E+E+ + VREV++ GGRMP++ D+LEK+EAI+K+ T+VYSAATV
Sbjct: 354  SAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATV 413

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQEKKSASSRPLN+AAEKDRLRRELEVAQS++ D AEVERI+AR+QELE  SRQT+ 
Sbjct: 414  KQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQ-DDAEVERIRARIQELE-ASRQTQG 471

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGG 1631
            KDAKA+RL+EMN++NRAENF+NASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVS P G
Sbjct: 472  KDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAG 531

Query: 1632 GDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDL 1811
            GD AA   NE                                       KLVDT+APVD 
Sbjct: 532  GDAAAATNNE--ASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQ 589

Query: 1812 GTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLT 1991
            GTESN+LH+FEL ISLT LQK          FMARKQRIEAT+G +V END +RH LTLT
Sbjct: 590  GTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLT 649

Query: 1992 VGDYKRRRGLL 2024
            V DYKRRRGLL
Sbjct: 650  VSDYKRRRGLL 660


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  652 bits (1681), Expect = 0.0
 Identities = 373/670 (55%), Positives = 435/670 (64%), Gaps = 2/670 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRTG  GRNRHS PPSRR+ +G                   Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDPTE+                DH             LYKD+ DR +L+++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPRPTPXXXXXXXXXXXXXX 557
            TELQREMILSDRA ++DD  L  ++ +K + GK   P K++P P                
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSP-PMSSSRMRASARSADRS 179

Query: 558  XKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXXX 737
             K+DALNELRAKR+KQQDP+                   P R+  T              
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSESES 239

Query: 738  XXXXXXXRNRDEDIAGNDDLGDSDVYRPI-DKENLTFEDIKDITIRRSRLAKWFVEPFFE 914
                    + DE   G+  + DSD  R +   E  +F+DIK+ITIRRS+LAKWF+EPFFE
Sbjct: 240  RS-----HSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFFE 294

Query: 915  ELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESS 1094
            ELIVGCFVRVGIG +KT    +YRLCMV+NVDA++PDRQYKLENK+T+KYLN+ W +ESS
Sbjct: 295  ELIVGCFVRVGIGRSKTG--PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1095 AARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVK 1274
            AARWQMA VSDS P+EEEF + V+EV   GGRMPS+ DVLEK++AIQK IT+VYSAATVK
Sbjct: 353  AARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1275 QMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQK 1454
            QMLQEKKSAS+RPLN+AAEKDRLRRELE+AQS+  D AEVERI+ RLQELE  SRQ KQK
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKH-DEAEVERIKTRLQELE-ASRQAKQK 470

Query: 1455 DAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGGG 1634
            DAKA++L+EMN++NR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY + PG  
Sbjct: 471  DAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPG-- 528

Query: 1635 DEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDLG 1814
             E A A N +                                      KLVDTSAPVD G
Sbjct: 529  -EKAAAGN-NIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQG 586

Query: 1815 TESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLTV 1994
            TESN LH+FEL ISL  LQK          FMARKQRIE+TVG +V ENDGRRH+LTLTV
Sbjct: 587  TESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTV 646

Query: 1995 GDYKRRRGLL 2024
             DYKRRRGLL
Sbjct: 647  SDYKRRRGLL 656


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  651 bits (1680), Expect = 0.0
 Identities = 376/673 (55%), Positives = 438/673 (65%), Gaps = 5/673 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MA+LENLLLEAAGRT + GRNRHS PPSRR+REG                  GY NRKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDPTE                 D              LYKDD DR +LA++
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSD--LYKDDDDRRKLAEM 118

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAK--QSGKKTQPGKETPRPTPXXXXXXXXXXXXX 554
            TELQREMIL DRA +++D  LKE++R K    GK TQ  KETP P+              
Sbjct: 119  TELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRAA 178

Query: 555  XXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KDDALNELRAKR+KQQDP+                     +RK   A           
Sbjct: 179  A-KDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQSDS 237

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPID-KENLTFEDIKDITIRRSRLAKWFVEPFF 911
                    ++ DE   G+  + DSD  R I   E LTF+DIK++T+RRS+LAKW +EPFF
Sbjct: 238  ESES----QSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFF 293

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            EELIVGCFVRVGIG  ++K+  +YRLCMVRNVDA++PDRQYKL+NK THKYLN+ W +E+
Sbjct: 294  EELIVGCFVRVGIG--RSKSGPIYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNEN 351

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA VSDS P EEEF + VREV++ GGRMP+++D+L+K+E+I+K  T+VYSAATV
Sbjct: 352  SAARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATV 411

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQEKKSAS+RPLNIA EKDRLRRELEVAQS + D  EV+RI+ RLQELE  SR+ KQ
Sbjct: 412  KQMLQEKKSASARPLNIALEKDRLRRELEVAQS-KNDEVEVDRIKTRLQELE-ASRKAKQ 469

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG- 1628
             DAKA+RL+EMN++NR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYYV  PG 
Sbjct: 470  TDAKAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGE 529

Query: 1629 -GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPV 1805
               D  A A N                                        KLVDT+APV
Sbjct: 530  VKEDSGANAGNN----GASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPV 585

Query: 1806 DLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLT 1985
            D GT SN LH+FEL ISL+ LQK          FMARKQRIEATVG +VPENDGRRH+LT
Sbjct: 586  DQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALT 645

Query: 1986 LTVGDYKRRRGLL 2024
            L+VGDYKRRRGLL
Sbjct: 646  LSVGDYKRRRGLL 658


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  646 bits (1667), Expect = 0.0
 Identities = 372/671 (55%), Positives = 440/671 (65%), Gaps = 3/671 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRTG  GRNRHS PPSRR+ +G                   Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXX-NDDHRXXXXXXXXXXXXLYKDDYDREQLAQ 377
            GSQVPLKKRLDP+E+               + DH             LYKD+ DR +L++
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 378  LTELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPRPTPXXXXXXXXXXXXX 554
            +TELQREMILSDRA ++DD  L  ++ +K + GK + P K++P P               
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSP-PMSSSRMRASARSADR 179

Query: 555  XXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              K+DALNELRAKR+KQQDP+                   P +RKP  +           
Sbjct: 180  SAKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPP-KRKPFTSTSLSSSSHSES 238

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPID-KENLTFEDIKDITIRRSRLAKWFVEPFF 911
                     + DE   G+  +GDSD  R +   E  +F+DIK+ITIRRS+LAKWF+EPFF
Sbjct: 239  ESRS----HSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFF 294

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            EELIVGCFVRVGIG +KT    +YRLCMV+NVDA++PDRQYKLENK+T+KYLN+ W +ES
Sbjct: 295  EELIVGCFVRVGIGRSKTG--PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNES 352

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA VSDS PLEEEF + V+EV + GGRMP++ DVLEK++AIQK IT+VYSAATV
Sbjct: 353  SAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATV 412

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQEKKSAS+RPLN+AAEKDRLRRELE+AQS+  D AEV+RI+ARLQELE  SR  KQ
Sbjct: 413  KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKH-DEAEVDRIKARLQELE-ASRHAKQ 470

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGG 1631
            KDAKA++L+EMN++NR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYY      
Sbjct: 471  KDAKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYT----- 525

Query: 1632 GDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDL 1811
            G++AA   N                                        KLVDTSAPVD 
Sbjct: 526  GEKAAAGNNS--VNGIVAGPGTNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQ 583

Query: 1812 GTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLT 1991
            GTESN LH+FEL ISL  LQK          FMARKQRIE+TVG +V ENDGRRHSLTL+
Sbjct: 584  GTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLS 643

Query: 1992 VGDYKRRRGLL 2024
            V DYKRRRGLL
Sbjct: 644  VSDYKRRRGLL 654


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  644 bits (1661), Expect = 0.0
 Identities = 370/670 (55%), Positives = 436/670 (65%), Gaps = 2/670 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRTG  GRNRHS P SRR+ +G                   Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDPTE+                D              LYKD+ DR +L+++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPRPTPXXXXXXXXXXXXXX 557
            TELQREMILSDRA ++DD  L  ++ +K + GK   P K++P P                
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSP-PMSSSRMRASARSADRS 179

Query: 558  XKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXXX 737
             K+DALNELRAKR+KQQDP+                   P +RKP  +            
Sbjct: 180  AKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPP-KRKPFTSTSLSSSSHSESE 238

Query: 738  XXXXXXXRNRDEDIAGNDDLGDSDVYRPI-DKENLTFEDIKDITIRRSRLAKWFVEPFFE 914
                    + DE   G+  + DSD  R +   E  +F+D+K+ITIRRS+LAKWF+EPFFE
Sbjct: 239  SRS----HSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFE 294

Query: 915  ELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESS 1094
            ELIVGCFVRVGIG +KT    +YRLCMV+NVDA++PDRQYKLENK+T+KYLN+ W +ESS
Sbjct: 295  ELIVGCFVRVGIGRSKTG--PIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1095 AARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVK 1274
            AARWQMA VSDS PLEEEF + V+EV + GGRMPS+ DVLEK++AIQK IT+VYSAATVK
Sbjct: 353  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1275 QMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQK 1454
            QMLQEKKSAS+RPLN+AAEKDRLRRELE+AQS+  D AEVERI+ RL ELE  SRQ KQK
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKY-DEAEVERIKTRLLELE-ASRQAKQK 470

Query: 1455 DAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGGG 1634
            DAKA++L+EMN++NR ENFKNASE+KPVNT LKAGEAGYDPFSRRWTRSRNYY + P  G
Sbjct: 471  DAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKP--G 528

Query: 1635 DEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDLG 1814
            ++AA   N                                        KLVDTSAPVD G
Sbjct: 529  EKAAAGNNS--VNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQG 586

Query: 1815 TESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLTV 1994
            TESN LH+FEL ISL  LQK          FMARKQ+IEATVG +V ENDGRRH+LTLTV
Sbjct: 587  TESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTV 646

Query: 1995 GDYKRRRGLL 2024
             DYKRRRGLL
Sbjct: 647  SDYKRRRGLL 656


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  644 bits (1660), Expect = 0.0
 Identities = 370/671 (55%), Positives = 435/671 (64%), Gaps = 3/671 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRT A GRNRHS PPSRRQREG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXX-NDDHRXXXXXXXXXXXXLYKDDYDREQLAQ 377
            GSQVPLKKRLDPTE+                 +              LYKDD DR +LA 
Sbjct: 61   GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 378  LTELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPG-KETPRPTPXXXXXXXXXXXXX 554
            ++ELQREMILSDRA +++D  L E +RAK    K+ P  KETP                 
Sbjct: 121  MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 555  XXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KDDALNELRAKR+KQQDP+                   P +RKP  A           
Sbjct: 181  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPID-KENLTFEDIKDITIRRSRLAKWFVEPFF 911
                    ++ DE   G+  + DSD  R I   +  TFEDIK++TIRRS+LAKW +EPFF
Sbjct: 241  ESRF----QSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFF 296

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            EELIVGCFVRVGIG  ++++  +YRLC+VRNVDAT+PDRQYKLENK THKYLN+ W +E+
Sbjct: 297  EELIVGCFVRVGIG--RSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEA 354

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA VSDS PLE+E+ + V+EV++ GGRM S+ D+LEK+EAIQK   +VYSAATV
Sbjct: 355  SAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATV 414

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQ+KKSAS+RPLNIAAEKDRLRRE++VA S + D AEVERI+ RLQ+LE  SR+ + 
Sbjct: 415  KQMLQDKKSASARPLNIAAEKDRLRREMDVAVS-KNDEAEVERIKTRLQQLE-ASRRLQM 472

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGG 1631
            KDAKA+RL+EMN++NR ENFKNASEL+P+   LKAGEAGYDPFSRRWTRSRNYYVS+ G 
Sbjct: 473  KDAKAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGE 531

Query: 1632 GDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDL 1811
             + AA A                                          KLVDT+APVD 
Sbjct: 532  ANGAAEAAGNS--DNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDG 589

Query: 1812 GTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLT 1991
            GTESNSLH+FEL ISL  LQK          F+ARKQRIEATVGR+VPENDGRRH+LTLT
Sbjct: 590  GTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLT 649

Query: 1992 VGDYKRRRGLL 2024
            V DYKRRRGLL
Sbjct: 650  VSDYKRRRGLL 660


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  639 bits (1649), Expect = e-180
 Identities = 363/672 (54%), Positives = 437/672 (65%), Gaps = 4/672 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQR-EGXXXXXXXXXXXXXXXXXAGYVNRKP 197
            MADLENLLLEAAGRTG  GRNR+S PPSRR++ EG                  GY +RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 198  SGSQVPLKKRLDPTEKXXXXXXXXXXXXXXN-DDHRXXXXXXXXXXXXLYKDDYDREQLA 374
            SGSQVPLKKRL+  E+                 D              LYKD+ DR++LA
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 375  QLTELQREMILSDRAQRRDDHRLKERVRAKQSGKK-TQPGKETPR-PTPXXXXXXXXXXX 548
            Q++EL RE+IL+DRA ++ D  L E++R+K+   K T+  KETP  P+            
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 549  XXXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXX 728
                KDDALNELRAKR+KQQDP+                    +++    +         
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSE 240

Query: 729  XXXXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPF 908
                       + DE   G+  + DSD          T+EDIK+ITIRR++LAKWF+EP+
Sbjct: 241  SESGSRS---HSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPW 297

Query: 909  FEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASE 1088
            FEELI+GCFVRVGIG +KT    VYRLCMVRNVDA +PD+ YKLENKST+KYLN+ W ++
Sbjct: 298  FEELIIGCFVRVGIGRSKTG--PVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGAD 355

Query: 1089 SSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAAT 1268
            SSAARWQMA VSDS P EEE+ + VRE ++ GGR+PS+ D+LEK+EAI+K+ T+VYSAAT
Sbjct: 356  SSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAAT 415

Query: 1269 VKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTK 1448
            VKQMLQEKKSASSRPLN+AAEKDRLRRELE+AQSR  D AEVERI+AR+ ELE  SRQ K
Sbjct: 416  VKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRH-DEAEVERIEARILELE-ASRQAK 473

Query: 1449 QKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG 1628
             KDAKA+RL+EMN++NR ENF+NASELKP+NT LKAGEAGYDPFSRRWTRSRNYYVS+P 
Sbjct: 474  VKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPA 533

Query: 1629 GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVD 1808
            GGD+A  A+N +                                      KLVDTSAPVD
Sbjct: 534  GGDDAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAG-KLVDTSAPVD 592

Query: 1809 LGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTL 1988
             GTESN++H+FEL ISL  LQK          FMARKQRIEA VG +V ENDGRRH+LTL
Sbjct: 593  QGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTL 652

Query: 1989 TVGDYKRRRGLL 2024
            TVGDYKRRRGLL
Sbjct: 653  TVGDYKRRRGLL 664


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  639 bits (1647), Expect = e-180
 Identities = 366/670 (54%), Positives = 430/670 (64%), Gaps = 2/670 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRT + G++RHS   SRR+R G                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            G+QVPLKKRLDPTE               +   R            LYKD+ DR +LA++
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPTPXXXXXXXXXXXXXXX 560
            +ELQRE+ILSDRAQ++DD  LKE+ R         P KETP                   
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFR---------PKKETPPLPSSRVRSSARSADRAAA 171

Query: 561  KDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXXXX 740
            KDDALNELRAKR+KQQDP+                    + RK   A             
Sbjct: 172  KDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRSFSHMTRKSFTAVGRSSSSQSDSDS 231

Query: 741  XXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPFFEEL 920
                   + D+   G D + DSD  R    E LTF+DIK+ITIRRS+LAKW +EPFFEEL
Sbjct: 232  RS----HSEDDGSTGEDPMMDSDDER---SEGLTFDDIKEITIRRSKLAKWLMEPFFEEL 284

Query: 921  IVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESSAA 1100
            IVGCFVRVGIG  ++K+  +YRLCMVRNVDA+DPDR+YKLENK+THKYLN+ W +E+SAA
Sbjct: 285  IVGCFVRVGIG--RSKSGPIYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAA 342

Query: 1101 RWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVKQM 1280
            RWQMA +SDS PLEEEF + VREV++ GGR+PS+ DVLEK+EAI+K  T+VYSAATVKQM
Sbjct: 343  RWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQM 402

Query: 1281 LQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQKDA 1460
            ++EKKSASSRPLNIA EKDRLRRELEVAQS+  D AEVERI+ RLQ+LE   RQ++ KD+
Sbjct: 403  IEEKKSASSRPLNIALEKDRLRRELEVAQSKH-DDAEVERIKTRLQQLE-ARRQSQGKDS 460

Query: 1461 KAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG--GG 1634
            KAVRL+EMN++NR ENFKNASELKPV T LKAGEAGYDPFSRRWTRSRNYYVS PG   G
Sbjct: 461  KAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKG 520

Query: 1635 DEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDLG 1814
            +  AI   +                                       KL+DTSAPVD G
Sbjct: 521  EAEAIVDAD----GALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFG 576

Query: 1815 TESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLTV 1994
            TESN +H+FEL ISL  LQK          F+ARKQRIEATVG +VPENDGRRH+LTLTV
Sbjct: 577  TESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTV 636

Query: 1995 GDYKRRRGLL 2024
             DYKRR GLL
Sbjct: 637  SDYKRRMGLL 646


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  631 bits (1628), Expect = e-178
 Identities = 364/672 (54%), Positives = 434/672 (64%), Gaps = 4/672 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTG-APGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKP 197
            MADLENLLLEAAGRTG A GRNRHS PPSRR+R+G                   Y +RKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 198  SGSQVPLKKRLDPTEKXXXXXXXXXXXXXXN-DDHRXXXXXXXXXXXXLYKDDYDREQLA 374
            SGSQVPLKKRLDPTE+                 D              LYKD+ DR +L+
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 375  QLTELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPRPTPXXXXXXXXXXXX 551
            +++ELQREMILSDRA ++DD  L  ++ +K + GK    GK++P P              
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSP-PLSSSRMRASARSAD 179

Query: 552  XXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXX 731
               K+ ALNELRAKR+KQQDP+ +                 P R+  T A          
Sbjct: 180  RSAKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSDS 239

Query: 732  XXXXXXXXXRNRDEDIAGNDDLGDSDVYRPID-KENLTFEDIKDITIRRSRLAKWFVEPF 908
                      + DE   G+  + DSD  R +   E  +F+DIK+ITIRRS+LAKWF+EPF
Sbjct: 240  DSRS-----HSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPF 294

Query: 909  FEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASE 1088
            FEELIVGCFVRVGIG +KT    +YRLCMV+NVD++DPDRQYKLEN++THKYLN+ W +E
Sbjct: 295  FEELIVGCFVRVGIGRSKTG--PIYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNE 352

Query: 1089 SSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAAT 1268
            SSAARWQMA VSDS PLEEEF + V+EV++ GGRMP++ DVLEK++AIQK IT+VYSA T
Sbjct: 353  SSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADT 412

Query: 1269 VKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTK 1448
            VKQMLQEKKS+SSRPLN+AAEKDRLRRE+E+AQS + D AEVERI+ R+QELE  SR  K
Sbjct: 413  VKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQS-KNDEAEVERIKTRVQELE-ASRHAK 470

Query: 1449 QKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG 1628
             KDAKA++L+EMN++NR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRSRNYYV+ PG
Sbjct: 471  VKDAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYVAKPG 530

Query: 1629 GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVD 1808
                   A  ++                                      KLVDTSAPVD
Sbjct: 531  ----EKAAARKNTTNVLVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVDTSAPVD 586

Query: 1809 LGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTL 1988
             GTESN LH+FEL ISL  L K          FMARKQR+EATVG +V ENDGRRH LTL
Sbjct: 587  QGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGRRHVLTL 646

Query: 1989 TVGDYKRRRGLL 2024
            +VGDYKRRRGLL
Sbjct: 647  SVGDYKRRRGLL 658


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  627 bits (1617), Expect = e-177
 Identities = 359/672 (53%), Positives = 432/672 (64%), Gaps = 4/672 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQ-REGXXXXXXXXXXXXXXXXXAGYVNRKP 197
            MADLENLLLEAAGRTG  GRNR+S  PSRR+ REG                  GY NRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 198  SGSQVPLKKRLDPTEKXXXXXXXXXXXXXXN-DDHRXXXXXXXXXXXXLYKDDYDREQLA 374
            SGSQVPLKKRL+  E+                 D              LYKD+ DR++LA
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 375  QLTELQREMILSDRAQRRDDHRLKERVRAKQSGKK-TQPGKETPR-PTPXXXXXXXXXXX 548
            Q++EL RE+IL+DRA ++ D  L E++R K+   K T+  KETP  P+            
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 549  XXXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXX 728
                KDDALNELRAKR+KQQDP+                    +++    +         
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSE 240

Query: 729  XXXXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPF 908
                       + DE   G+  + DSD       +  T+EDIK+ITIRR++LAKWF+EP+
Sbjct: 241  SGSRS-----HSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPW 295

Query: 909  FEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASE 1088
            FEELI+GCFVRVGIG  ++K+  VYRLCMVRNVDA +PD+ YKLENKST+KYLN+ W ++
Sbjct: 296  FEELIIGCFVRVGIG--RSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGAD 353

Query: 1089 SSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAAT 1268
            +SAARWQMA VSDS P EEE+ + VREV+  GGR+PS+ D+LEK+EAI+K+ T+VYSAAT
Sbjct: 354  TSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAAT 413

Query: 1269 VKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTK 1448
            VKQMLQEKKSASSRPLN+AAEKDRLRRELE+AQS+  D AEVERI AR++ELE  SR  K
Sbjct: 414  VKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKH-DEAEVERINARIEELE-ASRHAK 471

Query: 1449 QKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPG 1628
             KDAKA+RL+EMN++NR ENF+NASE+KPVNT LKAGEAGYDPFSRRWTRSRNYYVS P 
Sbjct: 472  VKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPA 531

Query: 1629 GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVD 1808
              D+  +AT                                         KLVDTSAPVD
Sbjct: 532  EADD-PVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVD 590

Query: 1809 LGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTL 1988
             GTESN++H FEL ISL  LQ+          FMARKQRIEATVG +VPENDGRRH+LTL
Sbjct: 591  QGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTL 650

Query: 1989 TVGDYKRRRGLL 2024
            TVGDYKRRRGLL
Sbjct: 651  TVGDYKRRRGLL 662


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  622 bits (1604), Expect = e-175
 Identities = 361/673 (53%), Positives = 430/673 (63%), Gaps = 5/673 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRT + GRNRHS   S+R+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREG--SYSGSDSRDDDSDDNRGYGSRKPS 58

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDD----YDREQ 368
            GSQVPLKKRLDP E+              +DD               ++ D     D + 
Sbjct: 59   GSQVPLKKRLDPAER--------------DDDQGSQEEGDYDGGASEHEGDSSNESDDDN 104

Query: 369  LAQLTELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKET-PRPTPXXXXXXXXXX 545
              Q+TEL+REM++ +R  ++ D  L+++ R+++  + T+  KET P P+           
Sbjct: 105  HGQMTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSA 164

Query: 546  XXXXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXX 725
                 KDDALNELRAKR+KQQDP+                   P++RK            
Sbjct: 165  DRAAAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRK----AFTPAGLS 220

Query: 726  XXXXXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEP 905
                        + DE   G+  + DSD          T++DIK+ITIRRS+LAKWF+EP
Sbjct: 221  SSSQSESESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEP 280

Query: 906  FFEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWAS 1085
            FFEELIVGCFVRVGIG  ++KN  +YRLCMVRNVDAT+PDR YKLEN++T KYLN+ W +
Sbjct: 281  FFEELIVGCFVRVGIG--RSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGN 338

Query: 1086 ESSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAA 1265
            ESSAARWQMA VSDSPPLEEEF + +REV++ GGRMPS+ DVLEK+E+IQK  T+VYSAA
Sbjct: 339  ESSAARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAA 398

Query: 1266 TVKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQT 1445
            TVKQMLQEKKSASSRPLN+AAEKDRLRRELEVAQSR  D  ++ERI+ RLQELE  SR +
Sbjct: 399  TVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRH-DDVDMERIKKRLQELE-ASRDS 456

Query: 1446 KQKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSP 1625
            K KDAKA+RL+EMN++NR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRSRNYY+S P
Sbjct: 457  KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKP 516

Query: 1626 GGGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPV 1805
              G+E     N D                                      KLVDT+AP+
Sbjct: 517  --GEEVTAEANGD----KNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPL 570

Query: 1806 DLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLT 1985
            DLGTESN LH FEL ISL  L+K          FMARKQRIEATVG +VPENDGRRH+LT
Sbjct: 571  DLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALT 630

Query: 1986 LTVGDYKRRRGLL 2024
            LTVGDYKRRRGLL
Sbjct: 631  LTVGDYKRRRGLL 643


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  620 bits (1599), Expect = e-175
 Identities = 360/673 (53%), Positives = 430/673 (63%), Gaps = 5/673 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADLENLLLEAAGRT + GRNRHS   S+R+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREG--SYSGSDSRDDDSDDNRGYGSRKPS 58

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDD----YDREQ 368
            GSQVPLKKRLDPTE+              +DD               ++ D     D + 
Sbjct: 59   GSQVPLKKRLDPTER--------------DDDQGSQEEGDYDGGASEHEGDSSNESDDDN 104

Query: 369  LAQLTELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKET-PRPTPXXXXXXXXXX 545
              Q+TEL+REM++ +R  ++ D  L+++ R+++  + T+  KET P P+           
Sbjct: 105  HGQMTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSA 164

Query: 546  XXXXXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXX 725
                 KDDALNELRAKR+KQQDP+                   P++RK            
Sbjct: 165  DRAAAKDDALNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRK----AFTPAGLS 220

Query: 726  XXXXXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEP 905
                        + DE   G+  + DSD          T++DIK+ITIRRS+LAKWF+EP
Sbjct: 221  SSSQSESESRSHSDDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEP 280

Query: 906  FFEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWAS 1085
            FFEELIVGCFVRVGIG  ++KN  +YRLCMVRNVDAT+PDR YKLEN++T KYLN+ W +
Sbjct: 281  FFEELIVGCFVRVGIG--RSKNGPIYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGN 338

Query: 1086 ESSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAA 1265
            ESSAARWQMA VSDSPPLEEEF + +REV++  GRMPS+ DVLEK+++IQK  T+VYSAA
Sbjct: 339  ESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAA 398

Query: 1266 TVKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQT 1445
            TVKQMLQEKKSASSRPLN+AAEKDRLRRELEVAQSR  D  ++ERI+ RLQELE  SR +
Sbjct: 399  TVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRH-DEVDMERIKKRLQELE-ASRDS 456

Query: 1446 KQKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSP 1625
            K KDAKA+RL+EMN++NR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRSRNYY+S P
Sbjct: 457  KVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKP 516

Query: 1626 GGGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPV 1805
              G+E     N D                                      KLVDT+AP+
Sbjct: 517  --GEEVTAEANGD----KNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPL 570

Query: 1806 DLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLT 1985
            DLGTESN LH FEL ISL  L+K          FMARKQRIEATVG +VPENDGRRH+LT
Sbjct: 571  DLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALT 630

Query: 1986 LTVGDYKRRRGLL 2024
            LTVGDYKRRRGLL
Sbjct: 631  LTVGDYKRRRGLL 643


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  618 bits (1593), Expect = e-174
 Identities = 358/669 (53%), Positives = 424/669 (63%), Gaps = 1/669 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            MADL++LLLEAAGRT +  ++RHS   S+R+R+                   GY +RKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDP+E               +   R            LYKD+ DR +LA++
Sbjct: 61   GSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEM 120

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAK-QSGKKTQPGKETPRPTPXXXXXXXXXXXXXX 557
            +ELQRE+ILSDRAQ++DD  LKE+ R K   GK TQ  K TP                  
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADRAA 180

Query: 558  XKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXXX 737
             KDDALNELRAKR+KQQDP+                         TI             
Sbjct: 181  AKDDALNELRAKRLKQQDPEAHRKLRDVSRGSVGSKNF-----SHTIKKSFSAVRRSSSS 235

Query: 738  XXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPFFEE 917
                    + D+D +  DD  DSD  R    + LTFEDIK+ITIRRSRLAKW +EPFFEE
Sbjct: 236  QSDSESRSHSDDDGSSADDAIDSDDER--GNQGLTFEDIKEITIRRSRLAKWLMEPFFEE 293

Query: 918  LIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESSA 1097
            LIVGC VRVGIG  K+  + +YRLC V NVD++DPDRQYKLENK+THKYLN+ W +E+SA
Sbjct: 294  LIVGCCVRVGIGKTKS-GRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSA 352

Query: 1098 ARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVKQ 1277
            ARWQMA VSDS PLEEE+D+ VREV+K GGR+PS+ DVLEK+EAI+KT T+VYSA TVKQ
Sbjct: 353  ARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTVKQ 412

Query: 1278 MLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQKD 1457
            M+QEKKSASSRPLNIA EKDRLRRELE+AQS+  D AEVERI+ARL++LE   +Q++ KD
Sbjct: 413  MIQEKKSASSRPLNIALEKDRLRRELEIAQSKH-DDAEVERIKARLEQLE-ARQQSQGKD 470

Query: 1458 AKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGGGD 1637
            +KAVRL+EMN++NR +NFKNAS LKPV T LKAGEAGYDPFSRRWTRSRNYYVS P    
Sbjct: 471  SKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQK 530

Query: 1638 EAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDLGT 1817
            + A A                                          KL+DT APVD GT
Sbjct: 531  DDAEA--NAVAAESLAEVETNGTGGVVAVRAGLEATAAALEAAAGAGKLIDTMAPVDQGT 588

Query: 1818 ESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLTVG 1997
             SN LH+FEL ISL  LQK          FMARKQRIEATVG +VPE+DGRRH+LTL+V 
Sbjct: 589  SSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRHALTLSVS 648

Query: 1998 DYKRRRGLL 2024
            DYKRRRGLL
Sbjct: 649  DYKRRRGLL 657


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  579 bits (1493), Expect = e-162
 Identities = 337/672 (50%), Positives = 414/672 (61%), Gaps = 4/672 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            M DL++LLLEAAGRT APGR+RHS PPS R+REG                  GY +RKPS
Sbjct: 1    MVDLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSRDDSDEER-GYASRKPS 59

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRL+  E+                D              LYK++ DR++LA +
Sbjct: 60   GSQVPLKKRLE-AEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGM 118

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPTPXXXXXXXXXXXXXXX 560
            TE QREMIL++RA ++ D    E++R+K+  +KT   K+  +P P               
Sbjct: 119  TEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSADRA 178

Query: 561  --KDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KDDALNELRAKRMKQQ+P                     ++RKP  +           
Sbjct: 179  AAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKPLASSNLSNSSQSDS 238

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPFFE 914
                    R++ +D   N  + DSD  R    +  TFEDIKDITIRRS+LAKW +EPFFE
Sbjct: 239  DS------RSQSDDEGSNGGMVDSDDDR---SDVPTFEDIKDITIRRSKLAKWLMEPFFE 289

Query: 915  ELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESS 1094
            ELIVGCFVRVGIG  ++KN  +YRLCMV+NVDATDPD+ YKLENK+THKYLN  W  ESS
Sbjct: 290  ELIVGCFVRVGIG--RSKNGPIYRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESS 347

Query: 1095 AARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVK 1274
            AARWQMA +SD  PLEEE+ + +REV++  GRMP++ D+ EK+EAI++  ++VYSA TVK
Sbjct: 348  AARWQMAMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVK 407

Query: 1275 QMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQK 1454
            QMLQEKKSAS RP+NIAAEKDRLR+ELEVAQ  + D A VERI+A++++LE  SR+ K+ 
Sbjct: 408  QMLQEKKSASVRPMNIAAEKDRLRKELEVAQI-KNDEAGVERIKAKIKQLE-ASREKKEV 465

Query: 1455 DAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYY--VSSPG 1628
            D KA++L+EMNK+NRAENFKNASE+K +  SLKAGEAGYDPFSRRWTRS NYY      G
Sbjct: 466  DKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEG 525

Query: 1629 GGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVD 1808
            G  EA  A   +                                      KL+DT AP+ 
Sbjct: 526  GDTEATAAAAVE-------------TNGAAAGENGVEATEAALEAAADAGKLIDTRAPIG 572

Query: 1809 LGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTL 1988
             G E N LH+FEL +SLT LQK          FMARKQ  EATVG +V ENDG+RH LTL
Sbjct: 573  QGAEHNLLHNFELPLSLTALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTL 632

Query: 1989 TVGDYKRRRGLL 2024
            TV DYKRRRGLL
Sbjct: 633  TVSDYKRRRGLL 644


>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
            gi|548857220|gb|ERN15034.1| hypothetical protein
            AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  579 bits (1492), Expect = e-162
 Identities = 347/673 (51%), Positives = 421/673 (62%), Gaps = 7/673 (1%)
 Frame = +3

Query: 27   DLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXX----AGYVNRK 194
            DLE+LLLEAAGRT   GR + S+   +R+ EG                      GY +RK
Sbjct: 5    DLEHLLLEAAGRTSTSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGYPSRK 64

Query: 195  PSGSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLA 374
            PSGSQVPLKKR +  +K              + D              LYKD+ DRE+L+
Sbjct: 65   PSGSQVPLKKRFETADKDDMRGKGDRDGGSDDSDS------GLSVGSDLYKDENDREELS 118

Query: 375  QLTELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPTPXXXXXXXXXXXXX 554
            ++TEL+REMIL+DRA RRD+  ++ +   +Q  K    GKE   P P             
Sbjct: 119  RMTELEREMILTDRADRRDN-LMRMKKAERQGDKSRSTGKELMAP-PQARGRSSAKSDRM 176

Query: 555  XXKDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KD AL EL AK M+++  +                   P+   P  +           
Sbjct: 177  ANKD-ALTELLAK-MQRKSRNRSERQDLMVVRNKAAAAASPVSDSPPSSGV--------- 225

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYR--PIDKENLTFEDIKDITIRRSRLAKWFVEPF 908
                    R+  +    + +LG+SD         E+ TFEDIK ITIRRSRLAKWF+EPF
Sbjct: 226  --------RSSSDGREVSVELGESDEDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLEPF 277

Query: 909  FEELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASE 1088
            FEE IVGCFVRVGIG +++  +S+YRLCMVRNVDA+DPDRQYK EN++THKYLN  W SE
Sbjct: 278  FEEAIVGCFVRVGIGTSRS-GQSIYRLCMVRNVDASDPDRQYKFENRTTHKYLNCVWGSE 336

Query: 1089 SSAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQK-TITYVYSAA 1265
            +SAARWQMAR+SDS PLE+EF E VREV++ GGRMP++ DV++K EAIQ+ + ++VYSAA
Sbjct: 337  ASAARWQMARISDSAPLEKEFLEWVREVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAA 396

Query: 1266 TVKQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQT 1445
            TVKQMLQEKKSAS+RP NIAAEKDRLR+E+E+A+SR  D AE ER++ARLQELEN+S+Q+
Sbjct: 397  TVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESRL-DHAEAERVRARLQELENLSQQS 455

Query: 1446 KQKDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSP 1625
            K+KDAKAV L+EMN+RNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVS P
Sbjct: 456  KKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 515

Query: 1626 GGGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPV 1805
             GG E      E                                       KLVDT APV
Sbjct: 516  EGGGEVVKEEAE------------------------TAATKAALEAAADAGKLVDTKAPV 551

Query: 1806 DLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLT 1985
            D GTES+SLH FEL ISL  LQ+          FMARKQRIEAT+G +VPENDGRRHSLT
Sbjct: 552  DEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRVPENDGRRHSLT 611

Query: 1986 LTVGDYKRRRGLL 2024
            L+V DYKRRRGL+
Sbjct: 612  LSVSDYKRRRGLV 624


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  575 bits (1482), Expect = e-161
 Identities = 339/671 (50%), Positives = 421/671 (62%), Gaps = 5/671 (0%)
 Frame = +3

Query: 27   DLENLLLEAAGRTGAPGRNRHSRPP--SRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            +L +LLLEAAGRT   GRNR   PP  S+R  +                   GY  RK S
Sbjct: 4    ELTDLLLEAAGRTNTGGRNR---PPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDP E+              + D              LYKDD DR++LAQ+
Sbjct: 61   GSQVPLKKRLDPQERDDDHSSHGEGN---DGDGYGNESDDDSIGSDLYKDDDDRQKLAQM 117

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPT-PXXXXXXXXXXXXXX 557
            TEL+REMIL+DRA ++ D  L +    K    + QP K++  P+                
Sbjct: 118  TELEREMILTDRAAKKSDRSLHD----KMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAA 173

Query: 558  XKDDALNELRAKRMKQQ-DPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
             +DDALNE+RAKR +QQ DP+ +                 PI+R+   A           
Sbjct: 174  DRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGSRGYSPIKRRSFTAASLGSSPTRGE 233

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENL-TFEDIKDITIRRSRLAKWFVEPFF 911
                     + + D + +D + DSD  +   +  L TFEDIK+I+IRRS+LAKWF+EPFF
Sbjct: 234  SDS-----HSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFF 288

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            +ELIVGCFVRVGIG  ++++  +YRLC+VRNVDA+DP+RQYKLENK+T K+LN+ W +E+
Sbjct: 289  DELIVGCFVRVGIG--RSRSGPIYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNEN 346

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA +SDSPPL +EFD+ VREV++ GGRMPS+ DVLEK+EAIQK+ T+VYSA TV
Sbjct: 347  SAARWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTV 406

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQ+KKSA+ RPLN+AAEKDRLRR++EVA+  + D AEVERI+ARLQELE+ SR+ ++
Sbjct: 407  KQMLQQKKSATWRPLNVAAEKDRLRRDMEVAK-MKNDEAEVERIKARLQELED-SRKVQE 464

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGG 1631
            KD KA RL+EMN++NR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+      
Sbjct: 465  KDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASN 524

Query: 1632 GDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDL 1811
            G+ AA A                                          KLVDT+APVD 
Sbjct: 525  GEAAAAAA----------LAAEDNNGAGGTADGGMAATAAALQAAAGAGKLVDTNAPVDQ 574

Query: 1812 GTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLT 1991
            GTESN+LH F+L ISL  LQK          FMARKQRIEATVG  VPENDGRRH+LTL+
Sbjct: 575  GTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLS 634

Query: 1992 VGDYKRRRGLL 2024
            V DYKRRRGLL
Sbjct: 635  VSDYKRRRGLL 645


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  572 bits (1475), Expect = e-160
 Identities = 332/674 (49%), Positives = 415/674 (61%), Gaps = 6/674 (0%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            M DLENLLLEAAGRT + GR+RH  PPS R+REG                  GY +RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDDSDEDR-GYASRKPS 57

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRL+  E+                D              LYK++ DR++LA +
Sbjct: 58   GSQVPLKKRLE-AEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGM 116

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPTPXXXXXXXXXXXXXXX 560
            TE QREMILS+RA ++ D    E++R+K+  +KT   K+  +P P               
Sbjct: 117  TEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRA 176

Query: 561  --KDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KDDALNELRAKRMKQQDP                      +RKP  +           
Sbjct: 177  AAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDS 236

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENLTFEDIKDITIRRSRLAKWFVEPFFE 914
                    R++ +D   N  + DSD  R    +  TFED+K++TIRRS+LAKW +EPFFE
Sbjct: 237  DS------RSQSDDEGSNGGMLDSDDDR---SDVPTFEDVKEVTIRRSKLAKWLMEPFFE 287

Query: 915  ELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASESS 1094
            ELIVGCFVRVGIG  ++K+  +YRLC V+NVDATDPD+ YKLENK+THKYLN+ W +E+S
Sbjct: 288  ELIVGCFVRVGIG--RSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETS 345

Query: 1095 AARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATVK 1274
            AARWQMA +SD  PLEEE+ + +REV++  GRMP++ D+ EK+EAIQ+T ++VYSA TVK
Sbjct: 346  AARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVK 405

Query: 1275 QMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQK 1454
            QMLQEKKSAS RP+N+AAEKDRLR+ELE+AQS + D A VERI++++++L+  SR  K  
Sbjct: 406  QMLQEKKSASVRPMNVAAEKDRLRKELEIAQS-KNDEAGVERIKSKIKQLD-ASRNKKGV 463

Query: 1455 DAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGGG 1634
            D KA++L+EMNK+NRAENFKNASE+K +  SLKAGEAGYDPFSRRWTRS NYY     G 
Sbjct: 464  DKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGK 523

Query: 1635 D----EAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAP 1802
            D    EAA+A   +                                      KL+DT AP
Sbjct: 524  DGEENEAAVAAAVE--------------TNGADAGAGVEATEAALEAAAEAGKLIDTRAP 569

Query: 1803 VDLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSL 1982
            +  G E N LH+FEL++SLT LQK          FMARKQ  EATVG +V ENDG+RH L
Sbjct: 570  IGQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGL 629

Query: 1983 TLTVGDYKRRRGLL 2024
            TLTV DYKRRRGLL
Sbjct: 630  TLTVSDYKRRRGLL 643


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  572 bits (1473), Expect = e-160
 Identities = 339/671 (50%), Positives = 425/671 (63%), Gaps = 5/671 (0%)
 Frame = +3

Query: 27   DLENLLLEAAGRTGAPGRNRHSRPP--SRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            +L +LLLEAAGRT   GRNR   PP  SRR  +                   GY  RK S
Sbjct: 4    ELTDLLLEAAGRTNTGGRNR---PPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLS 60

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRLDP E+              + D              LYKDD DR++LAQ+
Sbjct: 61   GSQVPLKKRLDPQERDDDHSSHGEGN---DGDGYGNESDDDSIGSDLYKDDDDRQKLAQM 117

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPT-PXXXXXXXXXXXXXX 557
            TEL+REMIL+DRA ++ D  L +    K    + QP K++  P+                
Sbjct: 118  TELEREMILTDRAAKKSDRSLHD----KMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAA 173

Query: 558  XKDDALNELRAKRMKQQ-DPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
             +DDALNE+RAKR +QQ DP+ +                 PI+R+   A           
Sbjct: 174  DRDDALNEIRAKRARQQQDPEGQFKLRDAARKGSGGRGYSPIKRRSFTAATLGSSPTRGE 233

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENL-TFEDIKDITIRRSRLAKWFVEPFF 911
                     + + D + +D + DSD  +   +  L TFEDIK+I+IRRS+LAKWF+EPFF
Sbjct: 234  SDS-----HSNEGDSSADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFF 288

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            +ELIVGCFVRVGIG  ++++  +YRLC+VRNVD++DP+RQYKLENK+T K+LN+ W +E+
Sbjct: 289  DELIVGCFVRVGIG--RSRSGPIYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNEN 346

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA VSDSPPL +EFD+ VREV++ GGRMPS+ DVLEK+EAIQK+ T+VYSA TV
Sbjct: 347  SAARWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTV 406

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQ+KKSA+ RPLN+AAEKDRLRR++EVA+  + D AEVERI+ARLQEL++ SR+ ++
Sbjct: 407  KQMLQQKKSATWRPLNVAAEKDRLRRDMEVAK-MKNDEAEVERIKARLQELDD-SRKVQE 464

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSSPGG 1631
            KD KA RL+EMN++NR ENFKNASEL+PVN  LKAG+AGYDPFSRRWTRS NY+  + G 
Sbjct: 465  KDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYF--AKGA 522

Query: 1632 GDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSAPVDL 1811
             +EA  A+N +                                      KLVDT+APVD 
Sbjct: 523  NEEAEGASNGE-VAAAAALAAEDNNGASGTADGGMAATAAALQAAAGAGKLVDTNAPVDQ 581

Query: 1812 GTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHSLTLT 1991
            GTESN+LH F+L ISL  LQK          FMARKQRIEATVG  VPENDGRRH+LTL+
Sbjct: 582  GTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLS 641

Query: 1992 VGDYKRRRGLL 2024
            V DYKRRRGLL
Sbjct: 642  VSDYKRRRGLL 652


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  570 bits (1469), Expect = e-159
 Identities = 327/675 (48%), Positives = 413/675 (61%), Gaps = 7/675 (1%)
 Frame = +3

Query: 21   MADLENLLLEAAGRTGAPGRNRHSRPPSRRQREGXXXXXXXXXXXXXXXXXAGYVNRKPS 200
            M DLENLLLEAAGRT   G++RHS PPS R+REG                  G+ +RKPS
Sbjct: 1    MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSRDDSDDDR-GFASRKPS 59

Query: 201  GSQVPLKKRLDPTEKXXXXXXXXXXXXXXNDDHRXXXXXXXXXXXXLYKDDYDREQLAQL 380
            GSQVPLKKRL+  E+                D              LYK++ DR++LA +
Sbjct: 60   GSQVPLKKRLE-AEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGM 118

Query: 381  TELQREMILSDRAQRRDDHRLKERVRAKQSGKKTQPGKETPRPTPXXXXXXXXXXXXXXX 560
            TE QREMIL++RA ++ D    E++R+K+  +KT   K+  +P P               
Sbjct: 119  TEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRA 178

Query: 561  --KDDALNELRAKRMKQQDPDWKXXXXXXXXXXXXXXXXXPIRRKPTIAXXXXXXXXXXX 734
              KDDALNELRAKRMKQQDP                     ++RKP  +           
Sbjct: 179  AAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQSDS 238

Query: 735  XXXXXXXXRNRDEDIAGNDDLGDSDVYRPIDKENL-TFEDIKDITIRRSRLAKWFVEPFF 911
                    R++ +D   N  L   D     D+ ++ TFEDIK+ITIRRS+LAKW +EPFF
Sbjct: 239  DS------RSQSDDEGSNAGLDSDD-----DRSDMPTFEDIKEITIRRSKLAKWLMEPFF 287

Query: 912  EELIVGCFVRVGIGMNKTKNKSVYRLCMVRNVDATDPDRQYKLENKSTHKYLNIFWASES 1091
            EELIVGCFVRVGIG  ++K+  +YRLCMVRNVDATDPD+ YKLENK+THKYLN+ W +E+
Sbjct: 288  EELIVGCFVRVGIG--RSKSGPIYRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNET 345

Query: 1092 SAARWQMARVSDSPPLEEEFDELVREVKKIGGRMPSRYDVLEKREAIQKTITYVYSAATV 1271
            SAARWQMA +SD  PLEEE+ + +REV++  GRMP++ D+ EK+EAI++  +++YSA TV
Sbjct: 346  SAARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETV 405

Query: 1272 KQMLQEKKSASSRPLNIAAEKDRLRRELEVAQSRRGDGAEVERIQARLQELENISRQTKQ 1451
            KQMLQEKKSAS RP+N+AAEKDRLR+ELE+AQS + D A VERI+ ++++L+  SR  K 
Sbjct: 406  KQMLQEKKSASVRPMNVAAEKDRLRKELEIAQS-KNDEAGVERIKTKIKQLD-ASRNKKG 463

Query: 1452 KDAKAVRLSEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYY----VS 1619
             D KA++L+EMNK+NRAENFKNASE+K +  SLK GEAGYDPFSRRWTRS NYY      
Sbjct: 464  VDKKALKLAEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKG 523

Query: 1620 SPGGGDEAAIATNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVDTSA 1799
              G  +EAA+A   +                                      KL+DT A
Sbjct: 524  KEGAENEAAVAAAVE--------------TNGVDAGAGVEATEAALEAAAEAGKLIDTRA 569

Query: 1800 PVDLGTESNSLHHFELTISLTELQKNXXXXXXXXXFMARKQRIEATVGRKVPENDGRRHS 1979
            P+  G E N LH+FEL++SL  LQK          FMARKQ  EATVG +V ENDG+RH 
Sbjct: 570  PIGQGAEHNQLHNFELSVSLAALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHG 629

Query: 1980 LTLTVGDYKRRRGLL 2024
            LTLTV DYKRRRGLL
Sbjct: 630  LTLTVSDYKRRRGLL 644