BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia27_contig00001771
         (6154 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2941   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2860   0.0  
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun...  2845   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2842   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2842   0.0  
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...  2825   0.0  
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ...  2825   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2824   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2820   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  2818   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2817   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2817   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2817   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2817   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2815   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  2815   0.0  
gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus...  2811   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  2810   0.0  
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...  2806   0.0  
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas...  2806   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2941 bits (7625), Expect = 0.0
 Identities = 1458/1535 (94%), Positives = 1496/1535 (97%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEE+HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQAQ+I+NPK+RL+KILDACKNK+KC+GGDEIE Q  DS+EPVKK+RGGCGAQQPKLTI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYK QRKK+DD EQLPEPVERKQQLSAE+VL+VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+RTSAWH+ESETGFITPGDTQVRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQE++L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK EFD+VF+YEID+ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ
Sbjct: 901  LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI TTG+NSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDDL+SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P+VSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL+DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIKSGKVNKF E+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLNDQMLQ AIELQLPSYMEGLDFGMTPSRSPITGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP+YLLSPN RLSPI+DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2860 bits (7413), Expect = 0.0
 Identities = 1420/1538 (92%), Positives = 1480/1538 (96%), Gaps = 3/1538 (0%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MDMRFPYSPAEVAKVR+VQFGILSP+EIR MSVV+I+HSET ERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCS+ILADEE+H+
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEI-EVQGQDSEEPVKKNR-GGCGAQQPKL 5411
            FKQA +I+NPK+RL+K+LD CKNKTKC+GGD+I E Q QDSEE VKK R GGCGAQQPK+
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 5410 TIEGMKMIAEYKAQRKKSDDQEQ-LPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPK 5234
            TIEGMKM+AEYK  RKK+D+QEQ LPEPVERKQQL+AEKVL+VLKRI+DEDC LLGLNPK
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 5233 YARPDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAH 5054
            YARPDWMILQV+        PSVMMDTS+RSEDDLTHQLAM+IRHNENLKRQE+NGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 5053 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 4874
            IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 4873 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 4694
            SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420

Query: 4693 IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 4514
            IIREDGQRLDLRYLKKS DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421  IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480

Query: 4513 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 4334
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIV
Sbjct: 481  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540

Query: 4333 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 4154
            QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600

Query: 4153 QINLMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGP 3974
            QINL+R SAWH+ESE+GFITPGDT VRIERGE+              GSLIHVIWEEVGP
Sbjct: 601  QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660

Query: 3973 DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQE 3794
            DAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETISKAKNEVKELI+AAQE
Sbjct: 661  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720

Query: 3793 KKLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 3614
            K+LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721  KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780

Query: 3613 QMTACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 3434
            QMTACVGQQNVEGKRIP+GFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781  QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840

Query: 3433 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 3254
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE
Sbjct: 841  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900

Query: 3253 SQKLDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEAD 3074
            SQKLDSLKMK++EF+ V++YEID ENW+PSYMLPEHVEDLKTIREF+NVFDAEVQKLEAD
Sbjct: 901  SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960

Query: 3073 RFQLGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLK 2894
            R QLGTEITTTG+NSWPMPVNLKRLIWNAQK FKVDLRRPSDMHPMEIVEAVDKLQERLK
Sbjct: 961  RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020

Query: 2893 VVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 2714
            VVPGDDLMS+EAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080

Query: 2713 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 2534
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140

Query: 2533 YLKPEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPD 2354
            YLK EV+KTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200

Query: 2353 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 2174
            EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260

Query: 2173 RIMNDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEG 1994
            RIMNDEAPKGEL+DES+EDDVFLKKIE NMLTEMALRGIPDINKVFIKSGK+NKF ENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320

Query: 1993 FKPENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1814
            FKPE EWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVI+VLGIEAVRR+LLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380

Query: 1813 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1634
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440

Query: 1633 TDYLRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIT 1454
             D+LRGVTENIMLGQLAPIGTGDC LYLNDQMLQQAIELQLPSYMEG+DFGMTPSRSP+T
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT 1500

Query: 1453 GTPYHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            GTPYHEGMMSP YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
            gi|462398589|gb|EMJ04257.1| hypothetical protein
            PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2845 bits (7374), Expect = 0.0
 Identities = 1408/1535 (91%), Positives = 1465/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVVQIEHSET   GKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKIL DE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RIK+PK+RL+KILDACKNKTKCDGGDEI+VQGQ+SEEPVKK+RGGCGAQQPKL+I
Sbjct: 121  FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKM AEYKAQRKKSDDQEQLPEPVERKQ L+AE+VLSVLKRISDED  LLGLNPKYAR
Sbjct: 181  EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RTSAWH+E+E+G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVK+LI  AQ K+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK F YE+D+ENWNP YML EHVEDLKTIREFRNVFDAEVQKLE DR Q
Sbjct: 901  LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI  TG+NSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDDL+S+EAQKNATLFF+ILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PE +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
             P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            N EAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF  NEGFK 
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE++E+LGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GLDFGMTPSRSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEGMMSP+YLLSPN RLSPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2842 bits (7368), Expect = 0.0
 Identities = 1407/1535 (91%), Positives = 1465/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RIKNPK+RLRKILDACKNKTKC+GGDEI+VQGQDS++PVKK+RGGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKM AEYKAQRKK+DD EQLPEPVERKQ L+AE+VL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RTSAWH+ESETG ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK EF+++FRYE ++ENW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI TTGENSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PE +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF ENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG C LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEGMMSP+YLLSPN RLSPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2842 bits (7368), Expect = 0.0
 Identities = 1407/1535 (91%), Positives = 1465/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RIKNPK+RLRKILDACKNKTKC+GGDEI+VQGQDS++PVKK+RGGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKM AEYKAQRKK+DD EQLPEPVERKQ L+AE+VL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RTSAWH+ESETG ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK EF+++FRYE ++ENW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI TTGENSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PE +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF ENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG C LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEGMMSP+YLLSPN RLSPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
            [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
            DNA-directed RNA polymerase II largest subunit family
            protein [Populus trichocarpa]
          Length = 1837

 Score = 2825 bits (7323), Expect = 0.0
 Identities = 1400/1538 (91%), Positives = 1465/1538 (95%), Gaps = 3/1538 (0%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEE+HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +IKNPKSRL+KILDACKNKTKC+GGDEI+VQGQD+EEPVKK+RGGCGAQQPKLTI
Sbjct: 121  FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYK QRKKSDDQEQLPEPVERKQ L+AE+VLSVLKRISDEDC LLGL+PKYAR
Sbjct: 181  EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQER+GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP I+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+RT+AWH +SE G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETIS AKNEVK+LIR AQ K+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK+EFD+VFRYE D+E+WNP+YM+ +HVEDL+ IRE R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLR--RPSDMHPMEIVEAVDKLQERLKV 2891
            LGTEI TTG+N+WPMPVNLKRLIWNAQKTFK+D R  R SD+HPME VEAVDKLQERLKV
Sbjct: 961  LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020

Query: 2890 VPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVA 2711
            VPGDDL+S+EAQKNATLFF ILLRST ASKRVL+EYRL+REAFDWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080

Query: 2710 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 2531
            PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140

Query: 2530 LKPEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDE 2351
            LKPE +KTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFV SYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200

Query: 2350 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 2171
            EVAPEKISPWLLRIELNREMM+DKKL+MADIAEKIN EFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260

Query: 2170 IMNDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGF 1991
            IMNDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK+ KV+ F E+EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320

Query: 1990 KPENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 1811
            K   EWMLDTEGVNLLAVMC+E+VDA++TTSNHLIEVIEV+GIEAVRRSLLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380

Query: 1810 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1631
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440

Query: 1630 DYLRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITG 1451
            DYLRGVTENIMLGQLAPIGTG C LYLND+ML+ AIELQLPSYMEGLDFGMTP+RSP++G
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG 1500

Query: 1450 TPYHEGMMSPSYLLSPNARLSPISD-AQFSPYVGGMAF 1340
            TPYH+GMMSP  L+SPN R+SP  D   FSPYVGGMAF
Sbjct: 1501 TPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537


>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|590702285|ref|XP_007046586.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 2825 bits (7323), Expect = 0.0
 Identities = 1394/1536 (90%), Positives = 1465/1536 (95%), Gaps = 1/1536 (0%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEEHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +IKNPK+RL+KILDACKNK+KC+GGDEI+VQGQD+EEPVKK+RGGCGAQQPKL+I
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            +GMKMIAEYK QRK++DDQEQLPEPVERKQ L+AE+VLSVLKRISDEDC LLGLNPK+AR
Sbjct: 181  DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTH LAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R SAWH+E+ETGFITPGDTQVRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAK EVK LI  AQ K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNP-SYMLPEHVEDLKTIREFRNVFDAEVQKLEADRF 3068
            LDSLKMKKSEFD+VFRY ID+E+WNP SYMLPEH+EDL+TI+E R+VF+AEVQKL+ADR+
Sbjct: 901  LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960

Query: 3067 QLGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 2888
            QLGTEI  TG+++WP+PVNLKRLIWNAQKTFKVD RR SD+HP+EIV++VDKLQERLKVV
Sbjct: 961  QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020

Query: 2887 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 2708
            PG D +S+EAQKNATLFF+ILLRST ASKRVL+EYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080

Query: 2707 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 2528
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140

Query: 2527 KPEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEE 2348
             PE SKTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP STIIEED+DFV SYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200

Query: 2347 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 2168
            VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260

Query: 2167 MNDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFK 1988
            MNDE PKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK  K +KF E +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320

Query: 1987 PENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1808
               EW+LDTEGVNLLAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380

Query: 1807 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1628
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440

Query: 1627 YLRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGT 1448
            YLRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GT
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1500

Query: 1447 PYHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            PYHEGMMSPSYLLSPN RLSPI+DAQFSPYVGGMAF
Sbjct: 1501 PYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2824 bits (7321), Expect = 0.0
 Identities = 1393/1535 (90%), Positives = 1458/1535 (94%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SP EVAKVR VQFGILSPDEIRQMSVVQIEHSET   GKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKIL DE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FK A RIKNPK+RL+KILDACKNKTKC+GGDEI+VQ  D++EP+KK+RGGCGAQQPKLTI
Sbjct: 121  FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQ--DTDEPLKKSRGGCGAQQPKLTI 178

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            +GMKM+AEYKAQRKKSDDQEQLPEPVERKQ L+AE+VLSVLKRISDEDC LLGLNPKYAR
Sbjct: 179  DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 239  PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 359  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 479  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 539  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RTSAWH+ESETG ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 599  LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 658

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKNEVKELI  AQ K L
Sbjct: 659  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSL 718

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 719  EPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 778

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 779  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 838

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 839  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 898

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK EFDK F Y  D+ENWNP YMLPEHVEDLKTIREFRNVFDAEV KLE DR Q
Sbjct: 899  LDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQ 958

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI  TG+NSWP+PVNLKRLIWNAQKTFK+D RR SDMHPMEIVEA+DKLQERL+VVP
Sbjct: 959  LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVP 1018

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDDL+S+EAQKNATLFFNILLRSTFASKRVL+EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1019 GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG 1078

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1079 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1138

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PE +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMST+IEED+DFV SYYEMPDEEV
Sbjct: 1139 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEV 1198

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
             P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAEKLILRIRIM
Sbjct: 1199 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIM 1258

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            N+E PKG+ +DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF +NEGFK 
Sbjct: 1259 NEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA 1318

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E EWMLDTEGVNLLAV+CH+DVDAKRTTSNHLIE+IEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1319 EQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1378

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AETD+
Sbjct: 1379 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDH 1438

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSY++GLDFGMTPSRSP++GTP
Sbjct: 1439 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTPSRSPVSGTP 1498

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            + +GMMSP+YLLSPN R+SPISDAQFSPYVGGMAF
Sbjct: 1499 FRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2820 bits (7309), Expect = 0.0
 Identities = 1391/1535 (90%), Positives = 1462/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+K VL+IMRCVCFNCSKILADE +HK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RI+NPK+RL+KILDACKNK+KC+GGDEI++ GQD++EPVKK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKKSDDQEQLPEPVERKQ LSAE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R S+WH+ESE G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK+EFD+VFRYE D+ENW P+YML E VEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI TTG++S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+DL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
             +V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFV SYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGE++DESAEDDVFLKKIE NMLTEM LRGIPDINKVFIK+ KV KF EN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
              EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG+C LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEG+MSPSYLLSPN RLSP SDAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 2818 bits (7305), Expect = 0.0
 Identities = 1388/1535 (90%), Positives = 1461/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKILADEE+HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +IKNPK+RL+KILDACKNKTKC+GGD+I+V  QD++EPVKK+RGGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISD+DC LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLK+QE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+RT+AWH++SE G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKN VKELIR AQ K+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFD+VF+YE+D+ENWNP+YM  +H++DLK IRE R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI TTG++SWP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDD +S+EAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L 
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PE +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEE+
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            +PEKISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK  KV+KF ENEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
              EWMLDTEGVNLLAVMC+E+VDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND ML+ AIELQLPSYM+GLDFGMTP+RSP++ TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSPSYLLSP+ RLSP +DAQFSPYV GM F
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2817 bits (7302), Expect = 0.0
 Identities = 1383/1535 (90%), Positives = 1459/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +I+NPK+RL+KILDACKNKTKC+GGDEI+V GQD EEP+KKN+GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RT+AWHA+++ G +T GDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK FR+E+D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI T+G++SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FV SYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+ +NEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E+EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP YL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2817 bits (7302), Expect = 0.0
 Identities = 1383/1535 (90%), Positives = 1459/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +I+NPK+RL+KILDACKNKTKC+GGDEI+V GQD EEP+KKN+GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RT+AWHA+++ G +T GDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK FR+E+D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI T+G++SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FV SYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+ +NEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E+EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP YL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2817 bits (7302), Expect = 0.0
 Identities = 1383/1535 (90%), Positives = 1459/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +I+NPK+RL+KILDACKNKTKC+GGDEI+V GQD EEP+KKN+GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RT+AWHA+++ G +T GDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK FR+E+D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI T+G++SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FV SYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+ +NEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E+EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP YL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2817 bits (7302), Expect = 0.0
 Identities = 1383/1535 (90%), Positives = 1459/1535 (95%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +I+NPK+RL+KILDACKNKTKC+GGDEI+V GQD EEP+KKN+GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RT+AWHA+++ G +T GDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK FR+E+D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI T+G++SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FV SYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+ +NEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E+EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP YL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2815 bits (7296), Expect = 0.0
 Identities = 1387/1536 (90%), Positives = 1464/1536 (95%), Gaps = 1/1536 (0%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKV++VQFGILSPDEIRQMSVVQIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKILADE++ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQ-DSEEPVKKNRGGCGAQQPKLT 5408
            FKQA +I+NPK+RL++I DACK+K  C GGD+++VQ Q D++EPVK+ RGGCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179

Query: 5407 IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYA 5228
            ++GMKM+AE+KA +KK+DDQEQLPEPVERKQ LSAE+VL+VLKRISDEDC LLGLNPK+A
Sbjct: 180  VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 5227 RPDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHII 5048
            RPDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 5047 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 4868
            +EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 4867 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 4688
            RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 4687 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 4508
            REDGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 4507 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 4328
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 4327 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 4148
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599

Query: 4147 NLMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDA 3968
            NL+R SAWH+E+ETGFITPGDT VRIE+GE+              GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3967 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKK 3788
            ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIS AKNEVKELI+ A +K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719

Query: 3787 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 3608
            LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 3607 TACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 3428
            TACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 3427 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 3248
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 3247 KLDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRF 3068
            KLDSLKMKK EFD VFRYE+D+ENW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADRF
Sbjct: 900  KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959

Query: 3067 QLGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 2888
            QLGTEI TTG+N+WPMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 2887 PGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAP 2708
            PGDD MS+EAQKNATLFFNILLRSTFASKRVLKEYRLT+EAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 2707 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 2528
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 2527 KPEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEE 2348
            KPEV+K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 2347 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 2168
            V P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 2167 MNDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFK 1988
             NDEAPKGE++DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKF +N+GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319

Query: 1987 PENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1808
            P+NEWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 1807 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1628
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 1627 YLRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGT 1448
            YLRGVTENIMLGQLAPIGTG C LYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSPI+GT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499

Query: 1447 PYHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            PYHEGMMSPSYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 2815 bits (7296), Expect = 0.0
 Identities = 1382/1535 (90%), Positives = 1458/1535 (94%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA +I+NPK+RL+KILDACKNKTKC+GGDEI+V GQD EEP+KK +GGCGAQQPKLTI
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L RT+AWHA+++ G +T GDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKKSEFDK FR+E+D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI T+G++SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FV SYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK  K+ +NEGFK 
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            E+EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YH+GMMSP YL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>gb|EYU42342.1| hypothetical protein MIMGU_mgv1a000091mg [Mimulus guttatus]
          Length = 1842

 Score = 2811 bits (7288), Expect = 0.0
 Identities = 1393/1537 (90%), Positives = 1462/1537 (95%), Gaps = 2/1537 (0%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK+VLSI+RCVCFNCSKILADEEE K
Sbjct: 61   DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKIVLSILRCVCFNCSKILADEEEPK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RI+NPK+RLRKILDACKNKTKCDGGDEI+   QD+EEPVKK+RGGCGAQQPK++I
Sbjct: 121  FKQAMRIRNPKNRLRKILDACKNKTKCDGGDEIDGHSQDTEEPVKKSRGGCGAQQPKISI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            +GMKM+AEYK Q+KKSDDQ+Q+PEPVERKQQLSAEKVLS+LKRI+DEDC LLGLNPK+AR
Sbjct: 181  DGMKMVAEYKLQKKKSDDQDQMPEPVERKQQLSAEKVLSILKRITDEDCQLLGLNPKFAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R SAWH E+E GFITPGDTQVRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LLRYSAWHQETEKGFITPGDTQVRIEKGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FS+GIGDTIADAATMEKINETIS AKNEVKELIRAAQEK+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSMGIGDTIADAATMEKINETISNAKNEVKELIRAAQEKQL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            L+SLK+KKS+F+ +++YEIDN NWNP+YMLPE VEDLKTIRE R+VFDAEV KLE DRFQ
Sbjct: 901  LESLKLKKSDFNDMYKYEIDNSNWNPNYMLPEAVEDLKTIREIRSVFDAEVTKLEVDRFQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            LGTEI TTG+NSWP+PVN+KRL+ NAQKTFKVD RRPSDMHPMEIVEAVDKLQERLKVV 
Sbjct: 961  LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDD +S EAQKNATLFFNILLRS  ASKRVLKEYRLTREAF+WVIGEIESRFLQSLVA G
Sbjct: 1021 GDDYLSTEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P+VSKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FV SYYEMPDEE+
Sbjct: 1141 PDVSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
             P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            N++APKGEL DESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIK+ K+NKF EN+GFK 
Sbjct: 1261 NEQAPKGELADESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNSKLNKFDENDGFKA 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
            ENEWMLDTEGVNLLAVMCHE+VD +RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 ENEWMLDTEGVNLLAVMCHEEVDVRRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD 
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDC 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYME-GLDFGMTPSRSPITGT 1448
            LRGVTENIMLGQLAPIGTGDC L LN+QML+QAIE+ LPSYME GL+FGMTP RSP +GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALLLNEQMLKQAIEIPLPSYMEGGLEFGMTPGRSPHSGT 1500

Query: 1447 PYHEGMMSPSYLL-SPNARLSPISDAQFSPYVGGMAF 1340
            PYH+GMMSP+YLL SPN RLSP++DAQFSPYVGGMAF
Sbjct: 1501 PYHDGMMSPNYLLMSPNLRLSPVTDAQFSPYVGGMAF 1537


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 2810 bits (7285), Expect = 0.0
 Identities = 1389/1535 (90%), Positives = 1458/1535 (94%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRKMKCETCTA+MAECPGHFG+LELAKPMFHIGF+K VLSIMRCVCFNCSKILADE++HK
Sbjct: 61   DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RIK+PK+RLRKILDACKNKTKC+GGD+I++ G D+EEPVKK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKKSDDQEQLPEPVERKQ LSAE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDW+ILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD+
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+P P ILKP P+WTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R S+WH E+E G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS+AK +VK+LIR AQEKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMMESFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK++FD+ FRYE D+ENW P+YML E VEDLKTIREFRNVF+AEVQKL+ADRFQ
Sbjct: 901  LDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI TTG++S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            GDDL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            PEV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEEV
Sbjct: 1141 PEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGE++DESAEDDVFLKKIE NMLTEM LRGI DINKVFIK+ K+ KF ENEGFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
              EWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 YEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG+C L LND+ML+ AIELQLPSYMEGLDFGMTP RSPI+ TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGRSPISATP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEG+MSPSYLLSPN RLSP +DAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like isoform X2
            [Glycine max]
          Length = 1827

 Score = 2806 bits (7274), Expect = 0.0
 Identities = 1386/1535 (90%), Positives = 1456/1535 (94%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+K VL+IMRCVCFNCSKILADE +HK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RI+NPK+RL+KILDACKNK+KC+GGDEI++ GQD+EE VKK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMKMIAEYKAQRKKSDDQEQLPEPVERKQ LSAE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R S+WH+ESE G ITPGDT VRIE+GE+              G LIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR A EKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGR+MM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK+EFD+VFRYE D+ENW P+YML E VEDLKTIREFRNVF+AEVQKLEADRFQ
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI TTG++S  +PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+DL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV SYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGE++DESAEDDVFLKKIE NMLTEM LRGIPDINKVFIK+ KV KF EN+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
              EWMLDTEGVNLLAVMCHEDVD  RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG+C LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEG+MSPSYLLSPN RLSP +DAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535


>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
            gi|561031277|gb|ESW29856.1| hypothetical protein
            PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 2806 bits (7273), Expect = 0.0
 Identities = 1383/1535 (90%), Positives = 1458/1535 (94%)
 Frame = -1

Query: 5944 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 5765
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 5764 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKVVLSIMRCVCFNCSKILADEEEHK 5585
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+K VL+IMRCVCFNCSKILADE +HK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 5584 FKQAQRIKNPKSRLRKILDACKNKTKCDGGDEIEVQGQDSEEPVKKNRGGCGAQQPKLTI 5405
            FKQA RI+NPK+RL+KILDACKNK+KC+GGDEI++ GQD++EPVKK+RGGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 5404 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRISDEDCTLLGLNPKYAR 5225
            EGMK+IAEYKAQRKKSDDQEQLPEPVERKQ LSAE+VL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 5224 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 5045
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 5044 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4865
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 4864 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 4685
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 4684 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4505
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 4504 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 4325
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 4324 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 4145
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP PLWTGKQVFNLIIPK IN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600

Query: 4144 LMRTSAWHAESETGFITPGDTQVRIERGEVXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3965
            L+R S+WH+ESE G ITPGDT VRIE+GE+              GSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3964 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKKL 3785
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEKKL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720

Query: 3784 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3605
            EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 3604 ACVGQQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3425
            ACVGQQNVEGKRIPYGF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 3424 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 3245
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 3244 LDSLKMKKSEFDKVFRYEIDNENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 3065
            LDSLKMKK+EFD+VFRYE D+ENW P+YML E VEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 3064 LGTEITTTGENSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2885
            L TEI TTG++S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERL+VVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP 1020

Query: 2884 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 2705
            G+DL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 2704 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2525
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL 
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN 1140

Query: 2524 PEVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 2345
            P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDP+PMSTII+EDVDFV SYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEV 1200

Query: 2344 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 2165
            A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 2164 NDEAPKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFAENEGFKP 1985
            NDEAPKGE++DESAEDDVFLKKIE NMLTEM LRGIPDINKVFIK+ KV KF E+EGFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKP 1320

Query: 1984 ENEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1805
              EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1804 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1625
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1624 LRGVTENIMLGQLAPIGTGDCGLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPITGTP 1445
            LRGVTENIMLGQLAPIGTG+C LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 1444 YHEGMMSPSYLLSPNARLSPISDAQFSPYVGGMAF 1340
            YHEG+MSPSYLLSPN RLSP SDAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535