BLASTX nr result
ID: Akebia26_contig00044778
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00044778
(346 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 71 6e-25
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 71 3e-24
emb|CAN63175.1| hypothetical protein VITISV_027195 [Vitis vinifera] 86 1e-23
ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252... 66 2e-22
ref|XP_006477890.1| PREDICTED: uncharacterized protein LOC102616... 72 4e-22
ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293... 82 8e-21
emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera] 79 9e-20
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s... 65 3e-18
emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera] 80 7e-18
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 74 2e-17
gb|ABA96931.2| retrotransposon protein, putative, Ty1-copia subc... 61 8e-17
emb|CAN81142.1| hypothetical protein VITISV_018481 [Vitis vinifera] 79 1e-16
gb|ABA98024.2| retrotransposon protein, putative, Ty1-copia subc... 59 2e-16
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ... 64 2e-16
gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group] 70 2e-16
gb|ABI34306.1| Polyprotein, putative [Solanum demissum] 72 3e-16
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 59 3e-16
gb|ABB47787.2| retrotransposon protein, putative, Ty1-copia subc... 68 3e-16
gb|AAL31045.1|AC078893_8 putative polyprotein [Oryza sativa Japo... 68 3e-16
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc... 60 5e-16
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 71.2 bits (173), Expect(2) = 6e-25
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = -2
Query: 168 LLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
L LEG+ QTFK+A+++ E WKEAI SE+DSI+ N+TWELV+LPPG K + K
Sbjct: 589 LTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSK 644
Score = 68.6 bits (166), Expect(2) = 6e-25
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIEL--SNNEPREQESDIEPRRSKRTRTATSFGP 173
+ESR+A FFEDV+PCK K E + +E N++ + +E ++EPRRSKR RT SFGP
Sbjct: 527 MESRNASFFEDVFPCKSKEEPSSSKRMLETINENSQDQNEEVEVEPRRSKRVRTEKSFGP 586
Query: 172 DFI 164
DF+
Sbjct: 587 DFL 589
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 71.2 bits (173), Expect(2) = 3e-24
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = -2
Query: 168 LLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
L LEG+ QTFK+A+++ E WKEAI SE+DSI+ N+TWELV+LPPG K + K
Sbjct: 806 LTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSK 861
Score = 66.2 bits (160), Expect(2) = 3e-24
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPDF 167
+ESR+A FFEDV+PCK K E + +E ++ + +E ++EPRRSKR RT SFGPDF
Sbjct: 749 MESRNASFFEDVFPCKSKEEPSSSKRMLE---SQDQNEEVEVEPRRSKRVRTEKSFGPDF 805
Query: 166 I 164
+
Sbjct: 806 L 806
>emb|CAN63175.1| hypothetical protein VITISV_027195 [Vitis vinifera]
Length = 338
Score = 86.3 bits (212), Expect(2) = 1e-23
Identities = 36/56 (64%), Positives = 49/56 (87%)
Frame = -2
Query: 168 LLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
L L+ + +TFK+A+STPEAPFWKEAIN+E++SIM N+TW+L++LPPGNK +GCK
Sbjct: 82 LTYMLDNEPKTFKEAMSTPEAPFWKEAINNEIESIMHNHTWKLMDLPPGNKPLGCK 137
Score = 49.3 bits (116), Expect(2) = 1e-23
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPDF 167
IESR+A FE+++PCK+K E + + +N + +E EPR SKR + SFG D+
Sbjct: 25 IESRNASLFENIFPCKEKQEVSSNKRTYDTANGNHQNEE---EPRCSKRAKKTKSFGLDY 81
Query: 166 I 164
+
Sbjct: 82 L 82
>ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
Length = 946
Score = 66.2 bits (160), Expect(2) = 2e-22
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = -2
Query: 156 LEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTI 10
LEG+ QTFK+A+++ E WKEAI SE+DSI+ N+TWELV+LPP + I
Sbjct: 712 LEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPDDMLI 760
Score = 65.1 bits (157), Expect(2) = 2e-22
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPDF 167
+ESR+A FFEDV+PCK K E+P S + ++ + +E ++EPRRSKR RT SFGPDF
Sbjct: 651 MESRNASFFEDVFPCKSK-EEP--SSSKRMLKSQDQNEEVEVEPRRSKRVRTEKSFGPDF 707
Query: 166 I 164
+
Sbjct: 708 L 708
>ref|XP_006477890.1| PREDICTED: uncharacterized protein LOC102616497 [Citrus sinensis]
Length = 829
Score = 71.6 bits (174), Expect(2) = 4e-22
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = -2
Query: 168 LLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
L LE + Q+FK+A++ PE WKE INSE++SI+ N+TWELV+LPPG K +G K
Sbjct: 172 LTYLLESEPQSFKEAVTLPEGALWKEVINSEVESILQNHTWELVDLPPGCKPLGYK 227
Score = 58.5 bits (140), Expect(2) = 4e-22
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -1
Query: 343 ESRDAEFFEDVYPCKDKIE-KPLKRSH---IELSNNEPREQESDIEPRRSKRTRTATSFG 176
ESR+A FFE V+PC +++ + L++ H IE N+ +E ++E R SKR RT SFG
Sbjct: 109 ESRNASFFEHVFPCNSRVKLRELRQFHETTIENEENDEALEEQEVEVRHSKRARTEKSFG 168
Query: 175 PDFI 164
PDF+
Sbjct: 169 PDFL 172
>ref|XP_004301658.1| PREDICTED: uncharacterized protein LOC101293311 [Fragaria vesca
subsp. vesca]
Length = 1096
Score = 81.6 bits (200), Expect(2) = 8e-21
Identities = 33/52 (63%), Positives = 45/52 (86%)
Frame = -2
Query: 156 LEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
+EGD T+K+A+++ +APFWKEAINSE++SI+ N+TWEL NLPPG + IGCK
Sbjct: 585 IEGDPATYKEAMASSDAPFWKEAINSEVESILQNHTWELTNLPPGTRPIGCK 636
Score = 44.3 bits (103), Expect(2) = 8e-21
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = -1
Query: 343 ESRDAEFFEDVYPCKDKIEKPL--------KRSHIELSNNEPREQESDIEPRRSKRTRTA 188
E RDA +FED++P K +I+ + SN E ES E RRSKR R
Sbjct: 514 ECRDATYFEDIFPFKSRIQNQTVNRVISNASKDTASSSNPAVEETESLEEIRRSKRMRKE 573
Query: 187 TSFGPDFI 164
+FG DF+
Sbjct: 574 KNFGEDFV 581
>emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]
Length = 588
Score = 79.0 bits (193), Expect(2) = 9e-20
Identities = 33/52 (63%), Positives = 45/52 (86%)
Frame = -2
Query: 156 LEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++ D +++K+AI++P APFWKEAINSE+ IM N+TWEL++LPPG KTIGCK
Sbjct: 258 IDQDPRSYKEAITSPNAPFWKEAINSEIKLIMYNHTWELIDLPPGAKTIGCK 309
Score = 43.5 bits (101), Expect(2) = 9e-20
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPDF 167
IE+++A+FFE+++P K E+ ++++ + + + S+ EPRRSKR R T+ G F
Sbjct: 199 IETKNADFFENIFPMKLNSEQQVQKT-----SRDKSIEPSEFEPRRSKRDRKETNLGDGF 253
>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 65.5 bits (158), Expect(2) = 3e-18
Identities = 27/55 (49%), Positives = 43/55 (78%)
Frame = -2
Query: 165 LVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
L+ ++ D +T+++A+++ ++ WKEAI SE+DS+ N+TWELV+LP GNK I CK
Sbjct: 827 LLLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLAMNHTWELVDLPIGNKPIRCK 881
Score = 52.0 bits (123), Expect(2) = 3e-18
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Frame = -1
Query: 343 ESRDAEFFEDVYPCKDKIEKPLKRSHI---ELSNNEPREQESD-------IEPRRSKRTR 194
ESRD EFFE V+P K + P + + E+ + P + D +EP+RSKR R
Sbjct: 740 ESRDVEFFEHVFPLKQSLYAPSLSNRMHDPEIVSETPVSETVDTPNLSCELEPKRSKRQR 799
Query: 193 TATSFGPDFI 164
T SFGPDF+
Sbjct: 800 TEKSFGPDFL 809
>emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera]
Length = 965
Score = 80.5 bits (197), Expect(2) = 7e-18
Identities = 35/44 (79%), Positives = 42/44 (95%)
Frame = -2
Query: 132 KDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
+DAIS+P+APFWKEAINSE++SIM N+TWELV+LPPG KTIGCK
Sbjct: 521 RDAISSPDAPFWKEAINSEIESIMYNHTWELVDLPPGVKTIGCK 564
Score = 35.4 bits (80), Expect(2) = 7e-18
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATS 182
IE+ +A+FFE+++P K E+ ++ + + S EPRRSKR + T+
Sbjct: 470 IETNNADFFENIFPMKLNSEQ-----QVQKRRRDETIEPSKFEPRRSKRDKKETN 519
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 73.9 bits (180), Expect(2) = 2e-17
Identities = 33/59 (55%), Positives = 43/59 (72%)
Frame = -2
Query: 177 DLILLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++I V L+ D +TF +A+S+ +AP WKEA+N EMDSIM N TWEL +LP G K IG K
Sbjct: 837 EVIFAVNLDDDPKTFNEAMSSRDAPLWKEAVNDEMDSIMGNGTWELADLPKGKKPIGSK 895
Score = 40.4 bits (93), Expect(2) = 2e-17
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDI--EPRRSKRTRTATSFGP 173
+ESRD EFFE+ + D+ S S +E R Q S I EPR+S R R S+G
Sbjct: 765 VESRDVEFFENKFSRDDENSNGTTTS----STSEKRVQPSPIVEEPRKSTRVRKEKSYGD 820
Query: 172 DF 167
DF
Sbjct: 821 DF 822
>gb|ABA96931.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 737
Score = 61.2 bits (147), Expect(2) = 8e-17
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = -2
Query: 129 DAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
+A +TP+A +WKEA+ SEMDSI++N TWE++ P G K +GCK
Sbjct: 319 EAYATPDADYWKEAVRSEMDSIIANGTWEVIERPYGCKPVGCK 361
Score = 51.2 bits (121), Expect(2) = 8e-17
Identities = 34/71 (47%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQ----------ESDIE-PRRSKR 200
+ESRDA FFE +P KD + S I S+ P EQ E D E PRRSKR
Sbjct: 235 MESRDATFFESFFPMKDTHSSSSQPSEIIPSSITPPEQTEHTHEHITEEDDSEAPRRSKR 294
Query: 199 TRTATSFGPDF 167
RTA SFG DF
Sbjct: 295 QRTAKSFGDDF 305
>emb|CAN81142.1| hypothetical protein VITISV_018481 [Vitis vinifera]
Length = 622
Score = 78.6 bits (192), Expect(2) = 1e-16
Identities = 33/52 (63%), Positives = 45/52 (86%)
Frame = -2
Query: 156 LEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++ D +++K+A ++P APFWKEAINSE++SI N+TWELV+LPPG KTIGCK
Sbjct: 337 IDEDPRSYKEATTSPNAPFWKEAINSEIESIKYNHTWELVDLPPGAKTIGCK 388
Score = 33.5 bits (75), Expect(2) = 1e-16
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPDF 167
IE+++A FFE+++P K E+ ++++ + S EP E E RSKR R T+ G F
Sbjct: 279 IETKNASFFENIFPMKLNGEQQVQKTSRDKS-IEPFEFEP-----RSKRDRNETNLGNGF 332
>gb|ABA98024.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 727
Score = 59.3 bits (142), Expect(2) = 2e-16
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = -2
Query: 141 QTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++ +A ++P+A +WKEA+ SEMDSI++N TWE+ P G K +GCK
Sbjct: 448 KSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCK 494
Score = 52.0 bits (123), Expect(2) = 2e-16
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHI-----------ELSNNEPREQESDIEPRRSKR 200
+ESRDA FFE +P KD + S I E +N EQ++ PRRSKR
Sbjct: 368 MESRDATFFESFFPMKDTHNSSSQPSEIIPSSITPPEQTEHTNEHVTEQDNSEAPRRSKR 427
Query: 199 TRTATSFGPDF 167
RTA SFG DF
Sbjct: 428 QRTAKSFGDDF 438
>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length = 1309
Score = 63.5 bits (153), Expect(2) = 2e-16
Identities = 25/59 (42%), Positives = 43/59 (72%)
Frame = -2
Query: 177 DLILLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
D ++ ++ + ++ +A ++P+A +W+EA+ SEMDSI+SN TWE+ +LP G K +GCK
Sbjct: 787 DDYIIYLVDEEPRSLTEAYTSPDAEYWREAVLSEMDSIISNGTWEITDLPAGCKPVGCK 845
Score = 47.4 bits (111), Expect(2) = 2e-16
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDK-IEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTATSFGPD 170
+ESRD FFE ++P +DK + P S + +Q D+E RRSKR RT S G D
Sbjct: 729 MESRDVTFFESIFPMRDKEVVAPDGPSRTYSLPSSVNDQTPDLELRRSKRQRTEKSLGDD 788
Query: 169 FI 164
+I
Sbjct: 789 YI 790
>gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1117
Score = 69.7 bits (169), Expect(2) = 2e-16
Identities = 30/59 (50%), Positives = 44/59 (74%)
Frame = -2
Query: 177 DLILLVFLEGDHQTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
D ++ ++G +T +DA S+P+A +WKEA+ SEMDSI+SN TWE+V P G K++GCK
Sbjct: 594 DDYIVYLVDGTPRTIEDAYSSPDADYWKEAVCSEMDSIISNGTWEVVERPYGCKSVGCK 652
Score = 41.2 bits (95), Expect(2) = 2e-16
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Frame = -1
Query: 343 ESRDAEFFEDVYPCKDKIEK-------------PLKRSHIELSNNEPREQESDIEPRRSK 203
ESRDA FFE+ +P K+ P+K H + + +E E+++ + R+SK
Sbjct: 527 ESRDATFFENEFPMKNTPSTSSQEPVLPHEHFAPIK--HNDQTPDENPEEDNIVATRKSK 584
Query: 202 RTRTATSFGPDFI 164
R R A SFG D+I
Sbjct: 585 RQRIAKSFGDDYI 597
>gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 72.4 bits (176), Expect(2) = 3e-16
Identities = 33/55 (60%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Frame = -2
Query: 162 VFLEGDHQ-TFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
VF GD + T K+A+S+ ++ FWKEA+N EM+S++SN TW+LV+LPPG KTIGCK
Sbjct: 777 VFNVGDDRLTLKEALSSHDSIFWKEAVNDEMESLISNKTWKLVDLPPGCKTIGCK 831
Score = 38.1 bits (87), Expect(2) = 3e-16
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDK------IEKPLKRSHIELSNNEPREQESDIEPRRSKRTRTAT 185
IES DA F E+ +P K IE+ + ++ ++ +D E RRSKR R
Sbjct: 710 IESGDAIFHENKFPFDSKNSGGQRIEQNILTLPSSSTSTLKNKEVNDFELRRSKRARVEK 769
Query: 184 SFGPDF 167
FGPDF
Sbjct: 770 DFGPDF 775
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 59.3 bits (142), Expect(2) = 3e-16
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = -2
Query: 141 QTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++ +A ++P+A +WKEA+ SEMDSI++N TWE+ P G K +GCK
Sbjct: 792 KSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCK 838
Score = 51.2 bits (121), Expect(2) = 3e-16
Identities = 34/71 (47%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQ---------ESDIE--PRRSKR 200
IESRDA FFE +P KD + S I S+ P EQ E D+ PRRSKR
Sbjct: 712 IESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKR 771
Query: 199 TRTATSFGPDF 167
RTA SFG DF
Sbjct: 772 QRTAKSFGDDF 782
>gb|ABB47787.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 67.8 bits (164), Expect(2) = 3e-16
Identities = 31/56 (55%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = -2
Query: 165 LVFLEGDH-QTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
+V+L D +T ++A S+P+A +WKEA++SEMDSIMSN TWE+V P G K +GCK
Sbjct: 848 IVYLVDDTLRTIEEAYSSPDADYWKEAVHSEMDSIMSNGTWEVVERPYGCKPVGCK 903
Score = 42.7 bits (99), Expect(2) = 3e-16
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCK---DKIEKPLKRSH-----IELSNNEPREQESD---IEPRRSKR 200
IESRDA FFE+ +P K + SH IE + P E ++ I+ R+SKR
Sbjct: 777 IESRDATFFENEFPMKHTPSTSSQETVMSHEYFAPIEHDDQTPEENPNEDNIIDTRKSKR 836
Query: 199 TRTATSFGPDFI 164
R A SFG D+I
Sbjct: 837 QRVAKSFGDDYI 848
>gb|AAL31045.1|AC078893_8 putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 67.8 bits (164), Expect(2) = 3e-16
Identities = 31/56 (55%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = -2
Query: 165 LVFLEGDH-QTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
+V+L D +T ++A S+P+A +WKEA++SEMDSIMSN TWE+V P G K +GCK
Sbjct: 840 IVYLVDDTLRTIEEAYSSPDADYWKEAVHSEMDSIMSNGTWEVVERPYGCKPVGCK 895
Score = 42.7 bits (99), Expect(2) = 3e-16
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCK---DKIEKPLKRSH-----IELSNNEPREQESD---IEPRRSKR 200
IESRDA FFE+ +P K + SH IE + P E ++ I+ R+SKR
Sbjct: 769 IESRDATFFENEFPMKHTPSTSSQETVMSHEYFAPIEHDDQTPEENPNEDNIIDTRKSKR 828
Query: 199 TRTATSFGPDFI 164
R A SFG D+I
Sbjct: 829 QRVAKSFGDDYI 840
>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 59.7 bits (143), Expect(2) = 5e-16
Identities = 23/47 (48%), Positives = 36/47 (76%)
Frame = -2
Query: 141 QTFKDAISTPEAPFWKEAINSEMDSIMSNNTWELVNLPPGNKTIGCK 1
++ +A ++P+A +WKEA++SEMDSI++N TWE+ P G K +GCK
Sbjct: 792 KSISEAYASPDADYWKEAVHSEMDSIIANGTWEVTERPYGCKPVGCK 838
Score = 50.1 bits (118), Expect(2) = 5e-16
Identities = 33/71 (46%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Frame = -1
Query: 346 IESRDAEFFEDVYPCKDKIEKPLKRSHIELSNNEPREQ---------ESDIE--PRRSKR 200
+ESRDA FFE +P KD + S I S+ P EQ E D+ PRRSKR
Sbjct: 712 MESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKR 771
Query: 199 TRTATSFGPDF 167
RTA SFG DF
Sbjct: 772 QRTAKSFGDDF 782