BLASTX nr result
ID: Akebia26_contig00039961
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00039961
(320 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 60 3e-07
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 59 5e-07
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 56 1e-06
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 57 2e-06
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 52 4e-06
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 55 5e-06
gb|AAF79288.1|AC068602_11 F14D16.18 [Arabidopsis thaliana] 54 5e-06
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 53 8e-06
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTTEKGLWVDHLKKKYVKDGNWWFPS--NTRGSKL 108
K EGGLGI++L E +K L+K W++ + LWV L+ ++ G++W S T GS +
Sbjct: 125 KDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWM 184
Query: 107 WRTIRSFLKPTINLTKRLIGDGATSSLF*LNW 12
W+ I K I +G+ +S + NW
Sbjct: 185 WKKILKHRALASGFVKHDIHNGSNTSFWFDNW 216
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 58.9 bits (141), Expect(2) = 5e-07
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTTEKGLWVDHLKKKYVKDGNWWF--PSNTRGSKL 108
K EGGLG+++L+E +K +K W+L + LWV L++ ++ G++W ++T GS +
Sbjct: 89 KEEGGLGLRSLTEANKVCCLKLIWRLLSSSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWM 148
Query: 107 WRTIRSFLKPTINLTKRLIGDGATSSLF*LNW 12
WR + + T+ I +G S + NW
Sbjct: 149 WRKLLKYRHLASGFTQYEIRNGKGVSFWHDNW 180
Score = 20.4 bits (41), Expect(2) = 5e-07
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 319 KNHLVVWHKVCKPKQK 272
K V W+ VC PK++
Sbjct: 76 KKAKVSWNDVCMPKEE 91
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 55.8 bits (133), Expect(2) = 1e-06
Identities = 27/95 (28%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTT-EKGLWVDHLKKKYVKDGNWW--FPSNTRGSK 111
K EGGLG+++L+E + ++K W++T+ + LWV K +K ++W P+++ GS
Sbjct: 274 KQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSW 333
Query: 110 LWRTIRSFLKPTINLTKRLIGDGATSSLF*LNWRG 6
+W+ + + + ++ + +GA +S + NW G
Sbjct: 334 MWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSG 368
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 307 VVWHKVCKPKQK 272
V W +CKPKQ+
Sbjct: 265 VSWDDICKPKQE 276
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
hypothetical protein At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTTEKG-LWVDHLKKKYVKDGNWWFPSNT--RGSK 111
K+EGGLG++ + E +K ++K W++ + KG LWVD +KK ++ G+ W T RGS
Sbjct: 28 KSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSSRGSW 87
Query: 110 LWRTIRSFLKPTINLTKRLIGDGATSSLF*LNW 12
+W+ + + K + +G ++S + +W
Sbjct: 88 IWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSW 120
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 52.4 bits (124), Expect(2) = 4e-06
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTT-EKGLWVDHLKKKYVKDGNWWFPSNT--RGSK 111
K EGGLG+++L E + +K WK+ + LWV + + +++ ++W T +GS
Sbjct: 869 KDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSW 928
Query: 110 LWRTIRSFLKPTINLTKRLIGDGATSSLF*LNW 12
+W+ + + + L+K +G+G +S + NW
Sbjct: 929 IWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNW 961
Score = 23.9 bits (50), Expect(2) = 4e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 307 VVWHKVCKPKQK 272
+ WH VCKPK +
Sbjct: 860 ISWHMVCKPKDE 871
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 54.7 bits (130), Expect(2) = 5e-06
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWKLTTE-KGLWVDHLKKKYVKDGNWWF--PSNTRGSK 111
K EGGLG+++L E + +K WK+ + LWV ++K +K+ +WF + T GS
Sbjct: 826 KKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFVKENTTLGSW 885
Query: 110 LWRTIRSFLKPTINLTKRLIGDGATSSLF*LNW 12
+WR + F + N K + G +S + +W
Sbjct: 886 MWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDW 918
Score = 21.2 bits (43), Expect(2) = 5e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 307 VVWHKVCKPKQK 272
V W VCKPK++
Sbjct: 817 VSWDDVCKPKKE 828
>gb|AAF79288.1|AC068602_11 F14D16.18 [Arabidopsis thaliana]
Length = 582
Score = 53.5 bits (127), Expect(2) = 5e-06
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = -1
Query: 281 KTEGGLGIKTLSEVHKTGLMKTCWK-LTTEKGLWVDHLKKKYVKDGNWWF--PSNTRGSK 111
K EGGLG+++++E +K ++K W+ L+ + LWV+ +KK ++ G++W + T GS
Sbjct: 213 KQEGGLGLRSIAEANKVCVLKLIWRILSARRSLWVELVKKYLIRRGSFWLVKENTTCGSW 272
Query: 110 LWRTIRSFLKPTINLTKRLIGDGATSS 30
+W+ I + + + + +G SS
Sbjct: 273 IWKKILKYRDTAKSFYRVEVRNGEASS 299
Score = 22.3 bits (46), Expect(2) = 5e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 307 VVWHKVCKPKQK 272
V W +VC PKQ+
Sbjct: 204 VAWSEVCSPKQE 215
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 53.1 bits (126), Expect(2) = 8e-06
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = -1
Query: 275 EGGLGIKTLSEVHKTGLMKTCWKLTT-EKGLWVDHLKKKYVKDGNWWF--PSNTRGSKLW 105
+GGLG+++L+E + ++K W++T+ + LWV K +K ++W P+++ GS +W
Sbjct: 787 QGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMW 846
Query: 104 RTIRSFLKPTINLTKRLIGDGATSSLF*LNWRG 6
+ + + + ++ + +GA +S + NW G
Sbjct: 847 KKMLKYRETAKPFSRVEVNNGARTSFWFDNWSG 879
Score = 21.9 bits (45), Expect(2) = 8e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 307 VVWHKVCKPKQ 275
V W +CKPKQ
Sbjct: 777 VSWDDICKPKQ 787