BLASTX nr result

ID: Akebia26_contig00038255 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00038255
         (618 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]...    61   3e-15
ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucife...    61   3e-15
gb|AEZ49456.1| RNA polymerase alpha subunit, partial [Neoregelia...    61   2e-14
gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia...    58   3e-14
ref|YP_001542479.1| RNA polymerase alpha subunit [Ceratophyllum ...    59   4e-14
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops...    58   4e-14
gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella...    60   5e-14
gb|AEZ49462.1| RNA polymerase alpha subunit, partial [Puya laxa]       60   7e-14
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica...    56   1e-13
ref|YP_007475907.1| RNA polymerase alpha subunit [Calamus caryot...    60   2e-13
ref|YP_005089365.1| rpoA gene product (chloroplast) [Silene vulg...    56   3e-13
ref|YP_740508.1| RNA polymerase alpha subunit [Citrus sinensis] ...    58   3e-13
ref|YP_009000128.1| RNA polymerase alpha subunit (chloroplast) [...    55   3e-13
ref|YP_005089608.1| rpoA gene product (chloroplast) [Silene lati...    56   3e-13
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa...    57   5e-13
ref|YP_008815062.1| RNA polymerase alpha subunit (chloroplast) [...    59   7e-13
ref|YP_008081838.1| DNA-directed RNA polymerase alpha chain (chl...    59   7e-13
gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia...    59   7e-13
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [...    59   9e-13
ref|YP_008815236.1| RNA polymerase alpha subunit (chloroplast) [...    59   9e-13

>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
           gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
           [Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
           polymerase alpha subunit (chloroplast) [Nelumbo lutea]
          Length = 339

 Score = 61.2 bits (147), Expect(3) = 3e-15
 Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLSYRELEMHLF-CVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+ILMNLK+I   S        F CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQDIISPPSVEIVDT 132



 Score = 41.6 bits (96), Expect(3) = 3e-15
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS TEP +L IGLQIER  GY MKT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRMKT 161



 Score = 24.6 bits (52), Expect(3) = 3e-15
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N++Q+ SYP D  F+ V+N N
Sbjct: 156 GYRMKTPNNSQDGSYPIDAVFMPVRNAN 183


>ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucifera]
           gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
           [Nelumbo nucifera] gi|290489668|gb|ADD31218.1| RNA
           polymerase alpha subunit protein [Nelumbo nucifera]
           gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
           (chloroplast) [Nelumbo nucifera]
           gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 339

 Score = 61.2 bits (147), Expect(3) = 3e-15
 Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLSYRELEMHLF-CVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+ILMNLK+I   S        F CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQDIISPPSVEIVDT 132



 Score = 41.6 bits (96), Expect(3) = 3e-15
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS TEP +L IGLQIER  GY MKT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRMKT 161



 Score = 24.6 bits (52), Expect(3) = 3e-15
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N++Q+ SYP D  F+ V+N N
Sbjct: 156 GYRMKTPNNSQDGSYPIDAVFMPVRNAN 183


>gb|AEZ49456.1| RNA polymerase alpha subunit, partial [Neoregelia carolinae]
          Length = 337

 Score = 61.2 bits (147), Expect(3) = 2e-14
 Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+IL+NLK+I  + +   +   L CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILLNLKEIVLRSNLYGVRDALICVRGPRYVTAQDIISPPSVEIVDT 132



 Score = 36.2 bits (82), Expect(3) = 2e-14
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160



 Score = 26.9 bits (58), Expect(3) = 2e-14
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   E IND+Q+ SYP D   + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183


>gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia feliciana]
          Length = 337

 Score = 57.8 bits (138), Expect(3) = 3e-14
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+IL+NLK+I   S  Y   +  +F V G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILLNLKEIVLRSNLYGVRDASIF-VRGPRYVTAQDIISPPSVEIVDT 132



 Score = 39.3 bits (90), Expect(3) = 3e-14
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIA+ TEP +L IGLQI+R+ GYHM+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYHME 160



 Score = 26.9 bits (58), Expect(3) = 3e-14
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   E IND+Q+ SYP D   + V+N N
Sbjct: 156 GYHMEPINDSQDVSYPIDAVSMPVRNAN 183


>ref|YP_001542479.1| RNA polymerase alpha subunit [Ceratophyllum demersum]
           gi|172048124|sp|A8SED5.1|RPOA_CERDE RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|148508476|gb|ABQ81483.1| RNA polymerase alpha subunit
           [Ceratophyllum demersum] gi|227481150|emb|CAP62529.1|
           RNA polymerase alpha subunit [Ceratophyllum demersum]
          Length = 337

 Score = 59.3 bits (142), Expect(3) = 4e-14
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+ILMNLK+I   S  Y  L+  + CV G   +T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILMNLKEIVLRSNLYGTLDASI-CVRGPRSVTAQDIISPPSVEIVDT 132



 Score = 40.0 bits (92), Expect(3) = 4e-14
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIA+ TEP +L IGLQIER+ GY +KT
Sbjct: 135 HIANLTEPIDLCIGLQIERDRGYRLKT 161



 Score = 24.3 bits (51), Expect(3) = 4e-14
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N+ Q+ SYP D  F+ V+N N
Sbjct: 156 GYRLKTPNNYQDGSYPIDTVFMPVRNAN 183


>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
          Length = 337

 Score = 58.2 bits (139), Expect(3) = 4e-14
 Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+H+ILMNLK+I   S  Y   +  + CV G  Y+T QDIISPP VEIV+
Sbjct: 76  TIVGIQESVHEILMNLKEIVLRSNLYGTCDASI-CVRGPGYVTAQDIISPPSVEIVD 131



 Score = 40.0 bits (92), Expect(3) = 4e-14
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS TEP +L IGLQIER  GY +KT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRIKT 161



 Score = 25.4 bits (54), Expect(3) = 4e-14
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   + +N+ Q+ SYP D  F+ V+N N
Sbjct: 156 GYRIKTLNNFQDGSYPIDAVFMPVRNAN 183


>gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella caulescens]
          Length = 337

 Score = 60.1 bits (144), Expect(3) = 5e-14
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEESLH+IL+NLK+I   S  Y   +  + CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESLHEILLNLKEIVLRSNLYGVRDASI-CVRGPRYVTAQDIISPPSVEIVDT 132



 Score = 36.2 bits (82), Expect(3) = 5e-14
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160



 Score = 26.9 bits (58), Expect(3) = 5e-14
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   E IND+Q+ SYP D   + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183


>gb|AEZ49462.1| RNA polymerase alpha subunit, partial [Puya laxa]
          Length = 337

 Score = 59.7 bits (143), Expect(3) = 7e-14
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+IL+NLK+I  + +   +   L CV G  Y+T +DIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILLNLKEIVLRSNLYGVRDALICVRGPRYVTARDIISPPSVEIVDT 132



 Score = 36.2 bits (82), Expect(3) = 7e-14
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160



 Score = 26.9 bits (58), Expect(3) = 7e-14
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   E IND+Q+ SYP D   + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183


>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
           gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
           [Nandina domestica]
          Length = 338

 Score = 56.2 bits (134), Expect(3) = 1e-13
 Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+ILMNLK+I   S  Y   +  + CV G   IT +DIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILMNLKEIVLRSNLYGTCDASI-CVKGPINITAKDIISPPSVEIVDT 132



 Score = 41.2 bits (95), Expect(3) = 1e-13
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS TEP +L IGLQIER  GY MKT
Sbjct: 135 HIASLTEPFDLCIGLQIERNRGYRMKT 161



 Score = 24.3 bits (51), Expect(3) = 1e-13
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N AQ  SYP D  F+ V+N N
Sbjct: 156 GYRMKTPNKAQNGSYPIDAVFMPVRNAN 183


>ref|YP_007475907.1| RNA polymerase alpha subunit [Calamus caryotoides]
           gi|449326388|gb|AGE92971.1| RNA polymerase alpha subunit
           [Calamus caryotoides]
          Length = 343

 Score = 60.1 bits (144), Expect(3) = 2e-13
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+IL+NLK+I   S  Y  ++  + CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILLNLKEIILRSNLYGVIDASI-CVRGPRYVTAQDIISPPSVEIVDT 132



 Score = 38.5 bits (88), Expect(3) = 2e-13
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKTS 501
           HIA+ TEP +L IGLQI+R+ GY MK++
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRMKSA 162



 Score = 22.7 bits (47), Expect(3) = 2e-13
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   ++ N++Q+ SYP D   + V+N N
Sbjct: 156 GYRMKSANNSQDGSYPIDAVSMPVRNAN 183


>ref|YP_005089365.1| rpoA gene product (chloroplast) [Silene vulgaris]
           gi|329755718|gb|AEC04279.1| RNA polymerase alpha subunit
           (chloroplast) [Silene vulgaris]
          Length = 263

 Score = 56.2 bits (134), Expect(3) = 3e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+HDILMNLK+I   S  Y   E  + CV G   +T QDII PP+VEIV+
Sbjct: 76  TIVGIKESIHDILMNLKEIILRSNLYGTCEASI-CVRGPRCVTAQDIILPPYVEIVD 131



 Score = 40.4 bits (93), Expect(3) = 3e-13
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIAS TEP +L IGLQ+ER  GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160



 Score = 24.3 bits (51), Expect(3) = 3e-13
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 501 NDAQEESYPKDNEFVLVQNVN 563
           N+ Q+ SYP D  F+ V+NVN
Sbjct: 163 NNFQDGSYPIDALFMPVRNVN 183


>ref|YP_740508.1| RNA polymerase alpha subunit [Citrus sinensis]
           gi|122166151|sp|Q09ME5.1|RPOA_CITSI RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|113952653|gb|ABI49051.1| RNA polymerase alpha subunit
           [Citrus sinensis]
          Length = 328

 Score = 57.8 bits (138), Expect(2) = 3e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+H+ILMNLKDI   S  Y   +  L CV G  Y+T QDI+ PP VEIV+
Sbjct: 76  TIVGIQESVHEILMNLKDIVLRSNLYGTCDA-LICVKGPGYVTAQDILLPPSVEIVD 131



 Score = 43.5 bits (101), Expect(2) = 3e-13
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKTSMTLK 513
           HIAS TEP +LSIGLQIER  GY++KT  T +
Sbjct: 135 HIASLTEPIDLSIGLQIERSRGYNIKTPNTFQ 166


>ref|YP_009000128.1| RNA polymerase alpha subunit (chloroplast) [Silene chalcedonica]
           gi|555944217|gb|AGZ18119.1| RNA polymerase alpha subunit
           (chloroplast) [Silene chalcedonica]
          Length = 326

 Score = 55.5 bits (132), Expect(3) = 3e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+HDILMNLK+I   S  Y   E  + CV G   +T QDII PP+VEIV+
Sbjct: 76  TIVGIQESVHDILMNLKEIILRSNLYGICEASI-CVRGPRCVTAQDIILPPYVEIVD 131



 Score = 40.4 bits (93), Expect(3) = 3e-13
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIAS TEP +L IGLQ+ER  GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160



 Score = 24.6 bits (52), Expect(3) = 3e-13
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N+ Q+ SYP D  F+ V+NVN
Sbjct: 156 GYHIKEPNNFQDGSYPIDALFMPVRNVN 183


>ref|YP_005089608.1| rpoA gene product (chloroplast) [Silene latifolia]
           gi|329755553|gb|AEC04116.1| RNA polymerase alpha subunit
           (chloroplast) [Silene latifolia]
          Length = 264

 Score = 55.8 bits (133), Expect(3) = 3e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+HDILMNLK+I   S  Y   E  + CV G   +T QDII PP+VEIV+
Sbjct: 76  TIVGIKESVHDILMNLKEIILRSNLYGTCEASI-CVRGPRCVTAQDIILPPYVEIVD 131



 Score = 40.4 bits (93), Expect(3) = 3e-13
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           HIAS TEP +L IGLQ+ER  GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160



 Score = 24.3 bits (51), Expect(3) = 3e-13
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 501 NDAQEESYPKDNEFVLVQNVN 563
           N+ Q+ SYP D  F+ V+NVN
Sbjct: 163 NNFQDGSYPIDALFMPVRNVN 183


>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
          Length = 337

 Score = 57.4 bits (137), Expect(3) = 5e-13
 Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           TIVGI+ES+H+ILMNLK++   S  Y      + CV G  Y+T QDIISPP VEIV+
Sbjct: 76  TIVGIQESVHEILMNLKEVVLRSNLYGTRNASI-CVSGPGYVTAQDIISPPSVEIVD 131



 Score = 38.9 bits (89), Expect(3) = 5e-13
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS TEP +L IGLQIE+  GY +KT
Sbjct: 135 HIASLTEPIDLCIGLQIEKNRGYRIKT 161



 Score = 23.5 bits (49), Expect(3) = 5e-13
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   +  N+ Q+ SYP D  F+ V+N N
Sbjct: 156 GYRIKTPNNFQDGSYPIDAVFMPVRNAN 183


>ref|YP_008815062.1| RNA polymerase alpha subunit (chloroplast) [Metapanax delavayi]
           gi|458599402|gb|AGG39161.1| RNA polymerase alpha subunit
           (chloroplast) [Metapanax delavayi]
          Length = 353

 Score = 59.3 bits (142), Expect(3) = 7e-13
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           T+VGI+ES+H+ILMNLK+I   S  Y   +  + CV G  Y+T QDIISPP+VEIV+
Sbjct: 76  TLVGIQESVHEILMNLKEIILRSNLYGSCDASI-CVRGPGYVTAQDIISPPYVEIVD 131



 Score = 37.0 bits (84), Expect(3) = 7e-13
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS  EP +L IGLQIER  GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161



 Score = 23.1 bits (48), Expect(3) = 7e-13
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 501 NDAQEESYPKDNEFVLVQNVN 563
           N+ Q+ SYP D  F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184


>ref|YP_008081838.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Cymbidium
           tracyanum] gi|482662428|gb|AGK25652.1| DNA-directed RNA
           polymerase alpha chain (chloroplast) [Cymbidium
           tracyanum]
          Length = 339

 Score = 58.9 bits (141), Expect(3) = 7e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TI GIEES+HDIL+NLK+I  K +   +     CV G  YIT QDIISPP V+IV+T
Sbjct: 76  TIAGIEESVHDILINLKEIVLKSNLYGVRDASICVRGPKYITAQDIISPPSVQIVDT 132



 Score = 36.6 bits (83), Expect(3) = 7e-13
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIA+ TEP +L I LQI+R  GYHMK+
Sbjct: 135 HIANLTEPIDLCIELQIKRGRGYHMKS 161



 Score = 23.9 bits (50), Expect(3) = 7e-13
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 474 GVGISYENINDAQEESYPKDNEFVLVQNVN 563
           G G   ++IN++ + SYP D   + V+N N
Sbjct: 154 GRGYHMKSINESHDGSYPIDIVSMPVRNAN 183


>gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia micrantha]
          Length = 337

 Score = 58.5 bits (140), Expect(3) = 7e-13
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
           TIVGIEES+H+IL+NLK+I   S  Y   +  + CV G  Y+T QDIISPP VEIV+T
Sbjct: 76  TIVGIEESVHEILLNLKEIVLRSNLYGVRDASI-CVMGPRYVTAQDIISPPSVEIVDT 132



 Score = 33.9 bits (76), Expect(3) = 7e-13
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
           +IA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 YIANLTEPIDLCIGLQIKRDRGYRME 160



 Score = 26.9 bits (58), Expect(3) = 7e-13
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
           G   E IND+Q+ SYP D   + V+N N
Sbjct: 156 GYRMEPINDSQDGSYPIDAVSMPVRNAN 183


>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
           senticosus] gi|558602943|ref|YP_008814975.1| RNA
           polymerase alpha subunit (chloroplast) [Brassaiopsis
           hainla] gi|347448239|gb|AEO92651.1| RNA polymerase alpha
           subunit (chloroplast) [Eleutherococcus senticosus]
           gi|458599223|gb|AGG39074.1| RNA polymerase alpha subunit
           (chloroplast) [Brassaiopsis hainla]
          Length = 353

 Score = 58.9 bits (141), Expect(3) = 9e-13
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           T+VGI+ES+H+ILMNLK+I   S  Y   +  + CV G  Y+T QDIISPP+VEIV+
Sbjct: 76  TLVGIQESVHEILMNLKEIILRSNLYGTCDASI-CVRGPGYVTAQDIISPPYVEIVD 131



 Score = 37.0 bits (84), Expect(3) = 9e-13
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS  EP +L IGLQIER  GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161



 Score = 23.1 bits (48), Expect(3) = 9e-13
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 501 NDAQEESYPKDNEFVLVQNVN 563
           N+ Q+ SYP D  F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184


>ref|YP_008815236.1| RNA polymerase alpha subunit (chloroplast) [Kalopanax septemlobus]
           gi|458599643|gb|AGG39335.1| RNA polymerase alpha subunit
           (chloroplast) [Kalopanax septemlobus]
          Length = 351

 Score = 58.9 bits (141), Expect(3) = 9e-13
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
           T+VGI+ES+H+ILMNLK+I   S  Y   +  + CV G  Y+T QDIISPP+VEIV+
Sbjct: 76  TLVGIQESVHEILMNLKEIILRSNLYGTCDASI-CVRGPGYVTAQDIISPPYVEIVD 131



 Score = 37.0 bits (84), Expect(3) = 9e-13
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
           HIAS  EP +L IGLQIER  GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161



 Score = 23.1 bits (48), Expect(3) = 9e-13
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 501 NDAQEESYPKDNEFVLVQNVN 563
           N+ Q+ SYP D  F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184


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