BLASTX nr result
ID: Akebia26_contig00038255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00038255
(618 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 61 3e-15
ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucife... 61 3e-15
gb|AEZ49456.1| RNA polymerase alpha subunit, partial [Neoregelia... 61 2e-14
gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia... 58 3e-14
ref|YP_001542479.1| RNA polymerase alpha subunit [Ceratophyllum ... 59 4e-14
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops... 58 4e-14
gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella... 60 5e-14
gb|AEZ49462.1| RNA polymerase alpha subunit, partial [Puya laxa] 60 7e-14
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica... 56 1e-13
ref|YP_007475907.1| RNA polymerase alpha subunit [Calamus caryot... 60 2e-13
ref|YP_005089365.1| rpoA gene product (chloroplast) [Silene vulg... 56 3e-13
ref|YP_740508.1| RNA polymerase alpha subunit [Citrus sinensis] ... 58 3e-13
ref|YP_009000128.1| RNA polymerase alpha subunit (chloroplast) [... 55 3e-13
ref|YP_005089608.1| rpoA gene product (chloroplast) [Silene lati... 56 3e-13
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa... 57 5e-13
ref|YP_008815062.1| RNA polymerase alpha subunit (chloroplast) [... 59 7e-13
ref|YP_008081838.1| DNA-directed RNA polymerase alpha chain (chl... 59 7e-13
gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia... 59 7e-13
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [... 59 9e-13
ref|YP_008815236.1| RNA polymerase alpha subunit (chloroplast) [... 59 9e-13
>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
[Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
polymerase alpha subunit (chloroplast) [Nelumbo lutea]
Length = 339
Score = 61.2 bits (147), Expect(3) = 3e-15
Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLSYRELEMHLF-CVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+ILMNLK+I S F CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQDIISPPSVEIVDT 132
Score = 41.6 bits (96), Expect(3) = 3e-15
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS TEP +L IGLQIER GY MKT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRMKT 161
Score = 24.6 bits (52), Expect(3) = 3e-15
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N++Q+ SYP D F+ V+N N
Sbjct: 156 GYRMKTPNNSQDGSYPIDAVFMPVRNAN 183
>ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucifera]
gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
[Nelumbo nucifera] gi|290489668|gb|ADD31218.1| RNA
polymerase alpha subunit protein [Nelumbo nucifera]
gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
Length = 339
Score = 61.2 bits (147), Expect(3) = 3e-15
Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLSYRELEMHLF-CVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+ILMNLK+I S F CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQDIISPPSVEIVDT 132
Score = 41.6 bits (96), Expect(3) = 3e-15
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS TEP +L IGLQIER GY MKT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRMKT 161
Score = 24.6 bits (52), Expect(3) = 3e-15
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N++Q+ SYP D F+ V+N N
Sbjct: 156 GYRMKTPNNSQDGSYPIDAVFMPVRNAN 183
>gb|AEZ49456.1| RNA polymerase alpha subunit, partial [Neoregelia carolinae]
Length = 337
Score = 61.2 bits (147), Expect(3) = 2e-14
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+IL+NLK+I + + + L CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILLNLKEIVLRSNLYGVRDALICVRGPRYVTAQDIISPPSVEIVDT 132
Score = 36.2 bits (82), Expect(3) = 2e-14
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160
Score = 26.9 bits (58), Expect(3) = 2e-14
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G E IND+Q+ SYP D + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183
>gb|AEZ49460.1| RNA polymerase alpha subunit, partial [Pitcairnia feliciana]
Length = 337
Score = 57.8 bits (138), Expect(3) = 3e-14
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+IL+NLK+I S Y + +F V G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILLNLKEIVLRSNLYGVRDASIF-VRGPRYVTAQDIISPPSVEIVDT 132
Score = 39.3 bits (90), Expect(3) = 3e-14
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIA+ TEP +L IGLQI+R+ GYHM+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYHME 160
Score = 26.9 bits (58), Expect(3) = 3e-14
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G E IND+Q+ SYP D + V+N N
Sbjct: 156 GYHMEPINDSQDVSYPIDAVSMPVRNAN 183
>ref|YP_001542479.1| RNA polymerase alpha subunit [Ceratophyllum demersum]
gi|172048124|sp|A8SED5.1|RPOA_CERDE RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|148508476|gb|ABQ81483.1| RNA polymerase alpha subunit
[Ceratophyllum demersum] gi|227481150|emb|CAP62529.1|
RNA polymerase alpha subunit [Ceratophyllum demersum]
Length = 337
Score = 59.3 bits (142), Expect(3) = 4e-14
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+ILMNLK+I S Y L+ + CV G +T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILMNLKEIVLRSNLYGTLDASI-CVRGPRSVTAQDIISPPSVEIVDT 132
Score = 40.0 bits (92), Expect(3) = 4e-14
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIA+ TEP +L IGLQIER+ GY +KT
Sbjct: 135 HIANLTEPIDLCIGLQIERDRGYRLKT 161
Score = 24.3 bits (51), Expect(3) = 4e-14
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N+ Q+ SYP D F+ V+N N
Sbjct: 156 GYRLKTPNNYQDGSYPIDTVFMPVRNAN 183
>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
Length = 337
Score = 58.2 bits (139), Expect(3) = 4e-14
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+H+ILMNLK+I S Y + + CV G Y+T QDIISPP VEIV+
Sbjct: 76 TIVGIQESVHEILMNLKEIVLRSNLYGTCDASI-CVRGPGYVTAQDIISPPSVEIVD 131
Score = 40.0 bits (92), Expect(3) = 4e-14
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS TEP +L IGLQIER GY +KT
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYRIKT 161
Score = 25.4 bits (54), Expect(3) = 4e-14
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + +N+ Q+ SYP D F+ V+N N
Sbjct: 156 GYRIKTLNNFQDGSYPIDAVFMPVRNAN 183
>gb|AEZ49446.1| RNA polymerase alpha subunit, partial [Fosterella caulescens]
Length = 337
Score = 60.1 bits (144), Expect(3) = 5e-14
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEESLH+IL+NLK+I S Y + + CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESLHEILLNLKEIVLRSNLYGVRDASI-CVRGPRYVTAQDIISPPSVEIVDT 132
Score = 36.2 bits (82), Expect(3) = 5e-14
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160
Score = 26.9 bits (58), Expect(3) = 5e-14
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G E IND+Q+ SYP D + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183
>gb|AEZ49462.1| RNA polymerase alpha subunit, partial [Puya laxa]
Length = 337
Score = 59.7 bits (143), Expect(3) = 7e-14
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+IL+NLK+I + + + L CV G Y+T +DIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILLNLKEIVLRSNLYGVRDALICVRGPRYVTARDIISPPSVEIVDT 132
Score = 36.2 bits (82), Expect(3) = 7e-14
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRME 160
Score = 26.9 bits (58), Expect(3) = 7e-14
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G E IND+Q+ SYP D + V+N N
Sbjct: 156 GYRMEPINDSQDVSYPIDAVSMPVRNAN 183
>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
[Nandina domestica]
Length = 338
Score = 56.2 bits (134), Expect(3) = 1e-13
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+ILMNLK+I S Y + + CV G IT +DIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILMNLKEIVLRSNLYGTCDASI-CVKGPINITAKDIISPPSVEIVDT 132
Score = 41.2 bits (95), Expect(3) = 1e-13
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS TEP +L IGLQIER GY MKT
Sbjct: 135 HIASLTEPFDLCIGLQIERNRGYRMKT 161
Score = 24.3 bits (51), Expect(3) = 1e-13
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N AQ SYP D F+ V+N N
Sbjct: 156 GYRMKTPNKAQNGSYPIDAVFMPVRNAN 183
>ref|YP_007475907.1| RNA polymerase alpha subunit [Calamus caryotoides]
gi|449326388|gb|AGE92971.1| RNA polymerase alpha subunit
[Calamus caryotoides]
Length = 343
Score = 60.1 bits (144), Expect(3) = 2e-13
Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+IL+NLK+I S Y ++ + CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILLNLKEIILRSNLYGVIDASI-CVRGPRYVTAQDIISPPSVEIVDT 132
Score = 38.5 bits (88), Expect(3) = 2e-13
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKTS 501
HIA+ TEP +L IGLQI+R+ GY MK++
Sbjct: 135 HIANLTEPIDLCIGLQIKRDRGYRMKSA 162
Score = 22.7 bits (47), Expect(3) = 2e-13
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G ++ N++Q+ SYP D + V+N N
Sbjct: 156 GYRMKSANNSQDGSYPIDAVSMPVRNAN 183
>ref|YP_005089365.1| rpoA gene product (chloroplast) [Silene vulgaris]
gi|329755718|gb|AEC04279.1| RNA polymerase alpha subunit
(chloroplast) [Silene vulgaris]
Length = 263
Score = 56.2 bits (134), Expect(3) = 3e-13
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+HDILMNLK+I S Y E + CV G +T QDII PP+VEIV+
Sbjct: 76 TIVGIKESIHDILMNLKEIILRSNLYGTCEASI-CVRGPRCVTAQDIILPPYVEIVD 131
Score = 40.4 bits (93), Expect(3) = 3e-13
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIAS TEP +L IGLQ+ER GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160
Score = 24.3 bits (51), Expect(3) = 3e-13
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 501 NDAQEESYPKDNEFVLVQNVN 563
N+ Q+ SYP D F+ V+NVN
Sbjct: 163 NNFQDGSYPIDALFMPVRNVN 183
>ref|YP_740508.1| RNA polymerase alpha subunit [Citrus sinensis]
gi|122166151|sp|Q09ME5.1|RPOA_CITSI RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|113952653|gb|ABI49051.1| RNA polymerase alpha subunit
[Citrus sinensis]
Length = 328
Score = 57.8 bits (138), Expect(2) = 3e-13
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+H+ILMNLKDI S Y + L CV G Y+T QDI+ PP VEIV+
Sbjct: 76 TIVGIQESVHEILMNLKDIVLRSNLYGTCDA-LICVKGPGYVTAQDILLPPSVEIVD 131
Score = 43.5 bits (101), Expect(2) = 3e-13
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKTSMTLK 513
HIAS TEP +LSIGLQIER GY++KT T +
Sbjct: 135 HIASLTEPIDLSIGLQIERSRGYNIKTPNTFQ 166
>ref|YP_009000128.1| RNA polymerase alpha subunit (chloroplast) [Silene chalcedonica]
gi|555944217|gb|AGZ18119.1| RNA polymerase alpha subunit
(chloroplast) [Silene chalcedonica]
Length = 326
Score = 55.5 bits (132), Expect(3) = 3e-13
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+HDILMNLK+I S Y E + CV G +T QDII PP+VEIV+
Sbjct: 76 TIVGIQESVHDILMNLKEIILRSNLYGICEASI-CVRGPRCVTAQDIILPPYVEIVD 131
Score = 40.4 bits (93), Expect(3) = 3e-13
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIAS TEP +L IGLQ+ER GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160
Score = 24.6 bits (52), Expect(3) = 3e-13
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N+ Q+ SYP D F+ V+NVN
Sbjct: 156 GYHIKEPNNFQDGSYPIDALFMPVRNVN 183
>ref|YP_005089608.1| rpoA gene product (chloroplast) [Silene latifolia]
gi|329755553|gb|AEC04116.1| RNA polymerase alpha subunit
(chloroplast) [Silene latifolia]
Length = 264
Score = 55.8 bits (133), Expect(3) = 3e-13
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+HDILMNLK+I S Y E + CV G +T QDII PP+VEIV+
Sbjct: 76 TIVGIKESVHDILMNLKEIILRSNLYGTCEASI-CVRGPRCVTAQDIILPPYVEIVD 131
Score = 40.4 bits (93), Expect(3) = 3e-13
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
HIAS TEP +L IGLQ+ER GYH+K
Sbjct: 135 HIASLTEPIDLCIGLQLERNRGYHIK 160
Score = 24.3 bits (51), Expect(3) = 3e-13
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 501 NDAQEESYPKDNEFVLVQNVN 563
N+ Q+ SYP D F+ V+NVN
Sbjct: 163 NNFQDGSYPIDALFMPVRNVN 183
>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
Length = 337
Score = 57.4 bits (137), Expect(3) = 5e-13
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
TIVGI+ES+H+ILMNLK++ S Y + CV G Y+T QDIISPP VEIV+
Sbjct: 76 TIVGIQESVHEILMNLKEVVLRSNLYGTRNASI-CVSGPGYVTAQDIISPPSVEIVD 131
Score = 38.9 bits (89), Expect(3) = 5e-13
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS TEP +L IGLQIE+ GY +KT
Sbjct: 135 HIASLTEPIDLCIGLQIEKNRGYRIKT 161
Score = 23.5 bits (49), Expect(3) = 5e-13
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G + N+ Q+ SYP D F+ V+N N
Sbjct: 156 GYRIKTPNNFQDGSYPIDAVFMPVRNAN 183
>ref|YP_008815062.1| RNA polymerase alpha subunit (chloroplast) [Metapanax delavayi]
gi|458599402|gb|AGG39161.1| RNA polymerase alpha subunit
(chloroplast) [Metapanax delavayi]
Length = 353
Score = 59.3 bits (142), Expect(3) = 7e-13
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
T+VGI+ES+H+ILMNLK+I S Y + + CV G Y+T QDIISPP+VEIV+
Sbjct: 76 TLVGIQESVHEILMNLKEIILRSNLYGSCDASI-CVRGPGYVTAQDIISPPYVEIVD 131
Score = 37.0 bits (84), Expect(3) = 7e-13
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS EP +L IGLQIER GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161
Score = 23.1 bits (48), Expect(3) = 7e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 501 NDAQEESYPKDNEFVLVQNVN 563
N+ Q+ SYP D F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184
>ref|YP_008081838.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Cymbidium
tracyanum] gi|482662428|gb|AGK25652.1| DNA-directed RNA
polymerase alpha chain (chloroplast) [Cymbidium
tracyanum]
Length = 339
Score = 58.9 bits (141), Expect(3) = 7e-13
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIE-KLSYRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TI GIEES+HDIL+NLK+I K + + CV G YIT QDIISPP V+IV+T
Sbjct: 76 TIAGIEESVHDILINLKEIVLKSNLYGVRDASICVRGPKYITAQDIISPPSVQIVDT 132
Score = 36.6 bits (83), Expect(3) = 7e-13
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIA+ TEP +L I LQI+R GYHMK+
Sbjct: 135 HIANLTEPIDLCIELQIKRGRGYHMKS 161
Score = 23.9 bits (50), Expect(3) = 7e-13
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 474 GVGISYENINDAQEESYPKDNEFVLVQNVN 563
G G ++IN++ + SYP D + V+N N
Sbjct: 154 GRGYHMKSINESHDGSYPIDIVSMPVRNAN 183
>gb|AEZ49437.1| RNA polymerase alpha subunit, partial [Brocchinia micrantha]
Length = 337
Score = 58.5 bits (140), Expect(3) = 7e-13
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVNT 412
TIVGIEES+H+IL+NLK+I S Y + + CV G Y+T QDIISPP VEIV+T
Sbjct: 76 TIVGIEESVHEILLNLKEIVLRSNLYGVRDASI-CVMGPRYVTAQDIISPPSVEIVDT 132
Score = 33.9 bits (76), Expect(3) = 7e-13
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMK 495
+IA+ TEP +L IGLQI+R+ GY M+
Sbjct: 135 YIANLTEPIDLCIGLQIKRDRGYRME 160
Score = 26.9 bits (58), Expect(3) = 7e-13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 GISYENINDAQEESYPKDNEFVLVQNVN 563
G E IND+Q+ SYP D + V+N N
Sbjct: 156 GYRMEPINDSQDGSYPIDAVSMPVRNAN 183
>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
senticosus] gi|558602943|ref|YP_008814975.1| RNA
polymerase alpha subunit (chloroplast) [Brassaiopsis
hainla] gi|347448239|gb|AEO92651.1| RNA polymerase alpha
subunit (chloroplast) [Eleutherococcus senticosus]
gi|458599223|gb|AGG39074.1| RNA polymerase alpha subunit
(chloroplast) [Brassaiopsis hainla]
Length = 353
Score = 58.9 bits (141), Expect(3) = 9e-13
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
T+VGI+ES+H+ILMNLK+I S Y + + CV G Y+T QDIISPP+VEIV+
Sbjct: 76 TLVGIQESVHEILMNLKEIILRSNLYGTCDASI-CVRGPGYVTAQDIISPPYVEIVD 131
Score = 37.0 bits (84), Expect(3) = 9e-13
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS EP +L IGLQIER GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161
Score = 23.1 bits (48), Expect(3) = 9e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 501 NDAQEESYPKDNEFVLVQNVN 563
N+ Q+ SYP D F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184
>ref|YP_008815236.1| RNA polymerase alpha subunit (chloroplast) [Kalopanax septemlobus]
gi|458599643|gb|AGG39335.1| RNA polymerase alpha subunit
(chloroplast) [Kalopanax septemlobus]
Length = 351
Score = 58.9 bits (141), Expect(3) = 9e-13
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 TIVGIEESLHDILMNLKDIEKLS--YRELEMHLFCVGGLAYITTQDIISPPFVEIVN 409
T+VGI+ES+H+ILMNLK+I S Y + + CV G Y+T QDIISPP+VEIV+
Sbjct: 76 TLVGIQESVHEILMNLKEIILRSNLYGTCDASI-CVRGPGYVTAQDIISPPYVEIVD 131
Score = 37.0 bits (84), Expect(3) = 9e-13
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 418 HIASPTEPTELSIGLQIEREWGYHMKT 498
HIAS EP +L IGLQIER GY +KT
Sbjct: 135 HIASLAEPIDLCIGLQIERNRGYLIKT 161
Score = 23.1 bits (48), Expect(3) = 9e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 501 NDAQEESYPKDNEFVLVQNVN 563
N+ Q+ SYP D F+ V+N N
Sbjct: 164 NNFQDGSYPIDAVFMPVRNAN 184