BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00036127
         (509 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001702016.1| photosystem II reaction center W protein [Ch...    59   5e-07
ref|XP_004961567.1| PREDICTED: photosystem II reaction center W ...    55   8e-06

>ref|XP_001702016.1| photosystem II reaction center W protein [Chlamydomonas
           reinhardtii] gi|20139842|sp|Q9SPI9.1|PSBW_CHLRE RecName:
           Full=Photosystem II reaction center W protein,
           chloroplastic; AltName: Full=PSII 6.1 kDa protein;
           Flags: Precursor gi|5739404|gb|AAD50464.1|AF170026_1
           core subunit of photosystem II precursor [Chlamydomonas
           reinhardtii] gi|158271473|gb|EDO97291.1| photosystem II
           reaction center W protein [Chlamydomonas reinhardtii]
          Length = 115

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
 Frame = +3

Query: 132 AVRCVARPVSRR------SVVCKAQQQQSSXXXXXXXXXXXXXXXXXSPALALVDERLGG 293
           A R  A+PVSR       +VVCKA   +S                   PA ALVDER+ G
Sbjct: 8   APRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNG 67

Query: 294 EGTGKSLGVSG-IEGWAVVIVFGLVWAAFYQANKE 395
           +GTG+  GV+  + GW ++ VFG +WA ++   K+
Sbjct: 68  DGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKD 102


>ref|XP_004961567.1| PREDICTED: photosystem II reaction center W protein,
           chloroplastic-like [Setaria italica]
          Length = 204

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
 Frame = +3

Query: 72  TMQTACSATGFKGLALAKPVAVRCV----ARPVSRRSVVCKAQQQQSSXXXXXXXXXXXX 239
           T+  A SA  F G ++A+P     +    AR    R   C  QQ  S             
Sbjct: 74  TISAAGSAALFAGASVARPAQAHGLPQLRARADKVRCSACSRQQDGSGKGAAAPAAGASS 133

Query: 240 XXXXXS------PALALVDERLGGEGTGKSLGVS-GIEGWAVVIVFGLVWAAF 377
                S      PALALVDER+  EGTG SLG+S  + GW ++ VFGL+W+ +
Sbjct: 134 LLAVASAMTTSSPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLY 186