BLASTX nr result
ID: Akebia26_contig00036127
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Akebia26_contig00036127 (509 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_001702016.1| photosystem II reaction center W protein [Ch... 59 5e-07 ref|XP_004961567.1| PREDICTED: photosystem II reaction center W ... 55 8e-06 >ref|XP_001702016.1| photosystem II reaction center W protein [Chlamydomonas reinhardtii] gi|20139842|sp|Q9SPI9.1|PSBW_CHLRE RecName: Full=Photosystem II reaction center W protein, chloroplastic; AltName: Full=PSII 6.1 kDa protein; Flags: Precursor gi|5739404|gb|AAD50464.1|AF170026_1 core subunit of photosystem II precursor [Chlamydomonas reinhardtii] gi|158271473|gb|EDO97291.1| photosystem II reaction center W protein [Chlamydomonas reinhardtii] Length = 115 Score = 59.3 bits (142), Expect = 5e-07 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Frame = +3 Query: 132 AVRCVARPVSRR------SVVCKAQQQQSSXXXXXXXXXXXXXXXXXSPALALVDERLGG 293 A R A+PVSR +VVCKA +S PA ALVDER+ G Sbjct: 8 APRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNG 67 Query: 294 EGTGKSLGVSG-IEGWAVVIVFGLVWAAFYQANKE 395 +GTG+ GV+ + GW ++ VFG +WA ++ K+ Sbjct: 68 DGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKD 102 >ref|XP_004961567.1| PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Setaria italica] Length = 204 Score = 55.5 bits (132), Expect = 8e-06 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Frame = +3 Query: 72 TMQTACSATGFKGLALAKPVAVRCV----ARPVSRRSVVCKAQQQQSSXXXXXXXXXXXX 239 T+ A SA F G ++A+P + AR R C QQ S Sbjct: 74 TISAAGSAALFAGASVARPAQAHGLPQLRARADKVRCSACSRQQDGSGKGAAAPAAGASS 133 Query: 240 XXXXXS------PALALVDERLGGEGTGKSLGVS-GIEGWAVVIVFGLVWAAF 377 S PALALVDER+ EGTG SLG+S + GW ++ VFGL+W+ + Sbjct: 134 LLAVASAMTTSSPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLY 186