BLASTX nr result
ID: Akebia26_contig00028540
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia26_contig00028540
(591 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 66 3e-15
emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group] 69 4e-15
gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subc... 66 2e-14
gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subc... 66 2e-14
gb|AAX95181.1| transposon protein, putative, CACTA, En/Spm sub-c... 66 4e-14
gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subc... 66 4e-14
gb|AAX95136.1| retrotransposon protein, putative, Ty1-copia sub-... 66 4e-14
gb|ABA96872.1| retrotransposon protein, putative, Ty1-copia subc... 68 5e-14
gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subc... 65 6e-14
gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-... 65 6e-14
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 65 8e-14
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ... 65 8e-14
gb|AAX95374.1| Integrase core domain, putative [Oryza sativa Jap... 65 8e-14
gb|AAX96109.1| retrotransposon protein, putative, Ty1-copia sub-... 65 8e-14
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-... 65 8e-14
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group... 65 8e-14
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group] 65 8e-14
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni... 65 8e-14
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja... 65 8e-14
gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group... 65 8e-14
>gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108707933|gb|ABF95728.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1040
Score = 66.2 bits (160), Expect(3) = 3e-15
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 951 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1010
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1011 RVMRYLKGTIELRLHYSGYPTVLEGY 1036
Score = 38.5 bits (88), Expect(3) = 3e-15
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 889 INEVKSFLYQNFDMKDLGVADVILNIKLIR 918
Score = 22.3 bits (46), Expect(3) = 3e-15
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 138 VDATSTIFQVQIFL*FGTNLALLKKRKCFYY 230
V+ V L FGTNL ++ + K F Y
Sbjct: 867 VEGVILCLYVDDILIFGTNLEMINEVKSFLY 897
>emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group]
Length = 1537
Score = 69.3 bits (168), Expect(2) = 4e-15
Identities = 34/86 (39%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QL + + G+LMY+ T+P+I+ V + R ++ +
Sbjct: 1329 DPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNLVDDHWQALE 1388
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT+ Y +HY GY VLEGY
Sbjct: 1389 RVMRYLKGTMSYGIHYTGYLKVLEGY 1414
Score = 37.7 bits (86), Expect(2) = 4e-15
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+EE K FL +F+ KDLG+ DV+L IK+LR
Sbjct: 1266 IEEVKDFLSKSFEMKDLGEADVILNIKLLR 1295
>gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1249
Score = 65.9 bits (159), Expect(2) = 2e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R + +
Sbjct: 1015 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRAFE 1074
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1075 RVMRYLKGTMELGLHYTGYPAVLEGY 1100
Score = 39.3 bits (90), Expect(2) = 2e-14
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR-TIH*FG---S*ISPTP 331
+ E K FL NFD KDLG DV+L IK++R + FG S SPTP
Sbjct: 967 INEVKSFLSQNFDMKDLGVADVILNIKLIREDLESFGYIDSKPSPTP 1013
>gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 65.9 bits (159), Expect(2) = 2e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ +V + R +
Sbjct: 958 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASTTRPDISFVVSKLSRFTSNPGDNHWRALE 1017
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1018 RVMRYLKGTVELGLHYTGYPAVLEGY 1043
Score = 38.9 bits (89), Expect(2) = 2e-14
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFDTKDLG DV+L IK+++
Sbjct: 896 INEVKSFLSQNFDTKDLGVVDVILNIKLIK 925
>gb|AAX95181.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group] gi|77549630|gb|ABA92427.1| transposon
protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
Length = 1600
Score = 66.2 bits (160), Expect(2) = 4e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QL + + G+LMY+ T+P+I+ V + R ++
Sbjct: 497 DPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALE 556
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT+ Y +HY GY VLEGY
Sbjct: 557 RVMRYLKGTMSYGIHYTGYPKVLEGY 582
Score = 37.7 bits (86), Expect(2) = 4e-14
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+EE K FL +F+ KDLG+ DV+L IK+LR
Sbjct: 434 IEEVKDFLSKSFEMKDLGEADVILNIKLLR 463
>gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1579
Score = 65.9 bits (159), Expect(2) = 4e-14
Identities = 37/90 (41%), Positives = 51/90 (56%)
Frame = +1
Query: 322 PHS*DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIG 501
P S DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1318 PTSYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHW 1377
Query: 502 MLYLRVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1378 RALERVMRYLKGTVELGLHYTGYPAVLEGY 1407
Score = 38.1 bits (87), Expect(2) = 4e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1260 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1289
>gb|AAX95136.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1025
Score = 66.2 bits (160), Expect(2) = 4e-14
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QL + + G+LMY+ T+P+I+ V + R ++
Sbjct: 497 DPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALE 556
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT+ Y +HY GY VLEGY
Sbjct: 557 RVMRYLKGTMSYGIHYTGYPKVLEGY 582
Score = 37.7 bits (86), Expect(2) = 4e-14
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+EE K FL +F+ KDLG+ DV+L IK+LR
Sbjct: 434 IEEVKDFLSKSFEMKDLGEADVILNIKLLR 463
>gb|ABA96872.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 732
Score = 68.2 bits (165), Expect(2) = 5e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QL + + G+LMY+ T+PNI+ V + R ++
Sbjct: 619 DPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPNISFAVSKLSRFVSNPGDDHWQALE 678
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT+ Y +HY GY VLEGY
Sbjct: 679 RVMRYLKGTMSYGIHYTGYPKVLEGY 704
Score = 35.4 bits (80), Expect(2) = 5e-14
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 170 NISLIWH*SCFVEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+I + W +EE K +L +F+ KDLG+ DV+L IK+ R
Sbjct: 545 DILIFWTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLPR 585
>gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 909
Score = 65.1 bits (157), Expect(2) = 6e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+PNI+ V + R +
Sbjct: 742 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPNISFAVSKLSRFTSNPGDDHWRALE 801
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
R++R KGT++ LHY GY VLEGY
Sbjct: 802 RIMRYLKGTMELGLHYIGYPAVLEGY 827
Score = 38.1 bits (87), Expect(2) = 6e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 680 INEVKSFLSQNFDMKDLGVADVILNIKLIR 709
>gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549030|gb|ABA91827.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 527
Score = 65.1 bits (157), Expect(2) = 6e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R ++
Sbjct: 358 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFISNPGDDHWRALE 417
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 418 RVMRYLKGTVELGLHYTGYPAVLEGY 443
Score = 38.1 bits (87), Expect(2) = 6e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 296 INEVKSFLSQNFDMKDLGVADVILNIKLIR 325
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|AAX95374.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|108864298|gb|ABA92908.2| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1393
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1048 DPSLLLRKNKRIARNQLEYSQIVGSLMYLASATRPDISFAVSKLSRFTSNPGDNHWCALE 1107
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1108 RVMRYLKGTVELGLHYTGYPAVLEGY 1133
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 986 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1015
>gb|AAX96109.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1350
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1048 DPSLLLRKNKRIARNQLEYSQIVGSLMYLASATRPDISFAVSKLSRFTSNPGDNHWCALE 1107
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1108 RVMRYLKGTVELGLHYTGYPAVLEGY 1133
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 986 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1015
>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1320
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1320
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R + +
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRVLE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030
>gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50878407|gb|AAT85181.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1297
Score = 64.7 bits (156), Expect(2) = 8e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 334 DPSIKLMKNTRCSNAQLEFVSVNGNLMYVMHCTKPNITHIVGMVCRLLAIQIPRIGMLYL 513
DPS+ L KN R + +QLE+ + G+LMY+ T+P+I+ V + R +
Sbjct: 1063 DPSLLLHKNKRIARSQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122
Query: 514 RVLRCSKGTLDYELHYQGYYNVLEGY 591
RV+R KGT++ LHY GY VLEGY
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGY 1148
Score = 38.1 bits (87), Expect(2) = 8e-14
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 203 VEETKMFLLSNFDTKDLGKDDVMLQIKILR 292
+ E K FL NFD KDLG DV+L IK++R
Sbjct: 1001 INEVKSFLSQNFDMKDLGVADVILNIKLIR 1030